LICENSE.txt
MANIFEST.in
README.md
setup.cfg
setup.py
biskit/__init__.py
biskit/amberResidueLibrary.py
biskit/amberResidues.py
biskit/atomCharger.py
biskit/biounit.py
biskit/colorspectrum.py
biskit/edparser.py
biskit/errorHandler.py
biskit/errors.py
biskit/gnuplot.py
biskit/hist.py
biskit/logFile.py
biskit/match2seq.py
biskit/mathUtils.py
biskit/matrixPlot.py
biskit/molUtils.py
biskit/pdbCleaner.py
biskit/pdbDope.py
biskit/pdbModel.py
biskit/plotUtils.py
biskit/profileCollection.py
biskit/ramachandran.py
biskit/reducecoordinates.py
biskit/rmsFit.py
biskit/settings.py
biskit/test.py
biskit/tools.py
biskit/wlc.py
biskit/xplorModel.py
biskit.egg-info/PKG-INFO
biskit.egg-info/SOURCES.txt
biskit.egg-info/dependency_links.txt
biskit.egg-info/requires.txt
biskit.egg-info/top_level.txt
biskit/core/__init__.py
biskit/core/bislist.py
biskit/core/dictlist.py
biskit/core/difflib_old.py
biskit/core/localpath.py
biskit/core/pdbparseFile.py
biskit/core/pdbparseModel.py
biskit/core/pdbparseNCBI.py
biskit/core/pdbparsePickle.py
biskit/core/pdbparser.py
biskit/core/pdbparserFactory.py
biskit/core/settingsManager.py
biskit/core/settingsParser.py
biskit/core/trajparseAmberCrd.py
biskit/core/trajparseNetCDF.py
biskit/core/trajparsePDBs.py
biskit/core/trajparser.py
biskit/core/trajparserFactory.py
biskit/core/oldnumeric/__analyze_oldnumeric.py
biskit/core/oldnumeric/__init__.py
biskit/core/oldnumeric/alter_code.py
biskit/core/oldnumeric/array_printer.py
biskit/core/oldnumeric/compat.py
biskit/core/oldnumeric/functions.py
biskit/core/oldnumeric/misc.py
biskit/core/oldnumeric/precision.py
biskit/core/oldnumeric/typeconv.py
biskit/core/oldnumeric/ufuncs.py
biskit/core/scientificIO/FortranFormat.py
biskit/core/scientificIO/PDB.py
biskit/core/scientificIO/PDBExportFilters.py
biskit/core/scientificIO/TextFile.py
biskit/core/scientificIO/__init__.py
biskit/data/spectrum.pl
biskit/data/amber/leap/ace_cap.pdb
biskit/data/amber/leap/nme_cap.pdb
biskit/data/amber/leap/solvate_box.leap
biskit/data/amber/residues/all_amino03.in
biskit/data/amber/residues/all_aminoct03.in
biskit/data/amber/residues/all_aminont03.in
biskit/data/amber/residues/all_nuc02.in
biskit/data/amber/residues/amino12.in
biskit/data/amber/residues/aminoct12.in
biskit/data/amber/residues/aminont12.in
biskit/data/amber/residues/nucleic10.in
biskit/data/amber/residues/uni_amino03.in
biskit/data/amber/residues/uni_aminoct03.in
biskit/data/amber/residues/uni_aminont03.in
biskit/data/amber/template_pme_ensemble_amber9/hosts_eq.dat
biskit/data/amber/template_pme_ensemble_amber9/postprocess.ptraj
biskit/data/amber/template_pme_ensemble_amber9/start_eq.csh
biskit/data/amber/template_pme_ensemble_amber9/start_prod.csh
biskit/data/amber/template_pme_ensemble_amber9/1_min_solvent/#min.inp#
biskit/data/amber/template_pme_ensemble_amber9/1_min_solvent/PREPARE.csh
biskit/data/amber/template_pme_ensemble_amber9/1_min_solvent/min.inp
biskit/data/amber/template_pme_ensemble_amber9/1_min_solvent/start.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/lamboot_if_needed.py
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/start.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/start_local.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2a_eq_solvent_coV/PREPARE.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2a_eq_solvent_coV/sim.inp
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2a_eq_solvent_coV/sim.inp.cmt
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2a_eq_solvent_coV/start.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2b_eq_solvent_coP/PREPARE.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2b_eq_solvent_coP/sim.inp
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2b_eq_solvent_coP/sim.inp.cmt
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2b_eq_solvent_coP/start.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2c_eq_solute/PREPARE.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2c_eq_solute/sim_0.inp
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2c_eq_solute/sim_1.inp
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2c_eq_solute/sim_2.inp
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2c_eq_solute/sim_3.inp
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2c_eq_solute/sim_4.inp
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2c_eq_solute/start.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/3_md_nvt_1ns/PREPARE.csh
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/3_md_nvt_1ns/sim.inp
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/3_md_nvt_1ns/sim.inp.cmt
biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/3_md_nvt_1ns/start.csh
biskit/data/biggles/ramachandran_bg.dat
biskit/data/defaults/exe_ambpdb.dat
biskit/data/defaults/exe_delphi.dat
biskit/data/defaults/exe_dsspcmbi.dat
biskit/data/defaults/exe_ls.dat
biskit/data/defaults/exe_prosa2003.dat
biskit/data/defaults/exe_ptraj.dat
biskit/data/defaults/exe_pymol.dat
biskit/data/defaults/exe_reduce.dat
biskit/data/defaults/exe_surfaceracer.dat
biskit/data/defaults/exe_tleap.dat
biskit/data/defaults/exe_tmalign.dat
biskit/data/defaults/exe_xplor.dat
biskit/data/defaults/settings.cfg
biskit/data/delphi/charm22.crg
biskit/data/delphi/delphi_simple.prm
biskit/data/delphi/prot_amb.crg
biskit/data/delphi/radii_amber_fromdelphi.siz
biskit/data/delphi/radii_chimerax.siz
biskit/data/delphi/radii_delphi_v5.siz
biskit/data/delphi/radii_delphi_v7.siz
biskit/data/pymol/color_b.py
biskit/data/pymol/rubor.py
biskit/data/reduce/reduce_wwPDB_het_dict.txt
biskit/data/surface_racer_3/radii.txt
biskit/data/xplor/pcr_crd2pdb.inp
biskit/data/xplor/rb_minimize_complex.inp
biskit/data/xplor/inpPcr/ExpSASAatA-J.inp
biskit/data/xplor/inpPcr/lesA-J.inp
biskit/data/xplor/inpPcr/modes.inp
biskit/data/xplor/inpPcr/nbonds_19h2o.inp
biskit/data/xplor/inpPcr/neutral19.inp
biskit/data/xplor/inpPcr/pcr.inp
biskit/data/xplor/inpPcr/restart_h2o.inp
biskit/data/xplor/inpPcr/tempcount
biskit/data/xplor/inpPcr/wellordered.inp
biskit/data/xplor/inpRefine/eval_energy.inp
biskit/data/xplor/inpRefine/lesA-J.inp
biskit/data/xplor/inpRefine/nbonds_LB89.inp
biskit/data/xplor/inpRefine/nbonds_repel.inp
biskit/data/xplor/inpRefine/neutral19.inp
biskit/data/xplor/inpRefine/param19.pro
biskit/data/xplor/inpRefine/refine.inp
biskit/data/xplor/templates/amber/build_hydrogens.inp
biskit/data/xplor/templates/amber/end.inp
biskit/data/xplor/templates/amber/head.inp
biskit/data/xplor/templates/amber/nbonds_LB89.inp
biskit/data/xplor/templates/amber/rename_for_Hex.inp
biskit/data/xplor/templates/amber/segment.inp
biskit/data/xplor/templates/param19/boxtyp20.pdb
biskit/data/xplor/templates/param19/dummy_generate.inp
biskit/data/xplor/templates/param19/end.inp
biskit/data/xplor/templates/param19/head.inp
biskit/data/xplor/templates/param19/param19.pro
biskit/data/xplor/templates/param19/param19.sol
biskit/data/xplor/templates/param19/segment.inp
biskit/data/xplor/templates/param19/toph19.pro
biskit/data/xplor/templates/param19/toph19.sol
biskit/data/xplor/templates/param19/unpatch_caps.pro
biskit/data/xplor/toppar/boxtyp20.pdb
biskit/data/xplor/toppar/param19.pro
biskit/data/xplor/toppar/param19.sol
biskit/data/xplor/toppar/toph19.pro
biskit/data/xplor/toppar/toph19.sol
biskit/data/xplor/toppar_amber/ash.inp
biskit/data/xplor/toppar_amber/paramber.gb.inp
biskit/data/xplor/toppar_amber/paramber.inp
biskit/data/xplor/toppar_amber/patches.pro
biskit/data/xplor/toppar_amber/setup1.inp
biskit/data/xplor/toppar_amber/topamber.inp
biskit/dock/__init__.py
biskit/dock/complex.py
biskit/dock/complexList.py
biskit/dock/complexModelRegistry.py
biskit/dock/complexrandomizer.py
biskit/dock/complextraj.py
biskit/dock/complexvc.py
biskit/dock/complexvcList.py
biskit/dock/delphiBindingEnergy.py
biskit/dock/docker.py
biskit/dock/hexparser.py
biskit/dock/hextools.py
biskit/exe/__init__.py
biskit/exe/delphi.py
biskit/exe/dssp.py
biskit/exe/exeConfig.py
biskit/exe/exeConfigCache.py
biskit/exe/executor.py
biskit/exe/prosa2003.py
biskit/exe/pymoler.py
biskit/exe/reduce.py
biskit/exe/surfaceRacer.py
biskit/exe/surfaceRacerTools.py
biskit/exe/tmalign.py
biskit/exe/xplorer.py
biskit/future/__init__.py
biskit/future/decorators.py
biskit/future/model.py
biskit/future/polymer.py
biskit/future/profilemirror.py
biskit/future/residue.py
biskit/md/__init__.py
biskit/md/amberCrdEntropist.py
biskit/md/amberEntropist.py
biskit/md/amberLeap.py
biskit/md/amberParmBuilder.py
biskit/md/amberRstParser.py
biskit/md/distanceTrajectory.py
biskit/md/ensembleTraj.py
biskit/md/fuzzyCluster.py
biskit/md/trajClusterDistances.py
biskit/md/trajClusterRmsd.py
biskit/md/trajectory.py
biskit/testdata/amber/1HPT_0.crd
biskit/testdata/amber/1HPT_0.pdb
biskit/testdata/amber/1HPT_0dry.pdb
biskit/testdata/amber/1HPT_0dry_amberformat.pdb
biskit/testdata/amber/sim.crd.gz
biskit/testdata/amber/sim.rst
biskit/testdata/amber/sim_dry.crd.gz
biskit/testdata/amber/top.parm
biskit/testdata/amber/crdentropist/cpptraj.out
biskit/testdata/amber/crdentropist/ligand.crd
biskit/testdata/amber/crdentropist/ligand.prmtop
biskit/testdata/amber/entropy/0_com.pdb
biskit/testdata/amber/entropy/com_fake.etraj
biskit/testdata/amber/entropy/extract_traj.py
biskit/testdata/amber/entropy/prepare_fake_traj.py
biskit/testdata/amber/entropy/rpa_com.crd
biskit/testdata/amber/entropy/rpa_com.parm
biskit/testdata/amber/leap/1HPT_dry.pdb
biskit/testdata/amber/leap/1HPT_solvated.pdb
biskit/testdata/amber/md_netcdf/0.pdb
biskit/testdata/amber/md_netcdf/heat.ncdf
biskit/testdata/amber/md_netcdf/heat.rst
biskit/testdata/amber/md_netcdf/top.parm
biskit/testdata/amber/md_pdbs/lig_pcr_00.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_01.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_02.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_03.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_04.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_05.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_06.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_07.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_08.pdb
biskit/testdata/amber/md_pdbs/lig_pcr_09.pdb
biskit/testdata/biounit/2V4E.pdb
biskit/testdata/biounit/3NAP.pdb
biskit/testdata/com/1BGS.pdb
biskit/testdata/com/1BGS.psf
biskit/testdata/com/1BGS_edited.pdb
biskit/testdata/com/1BGS_original.pdb
biskit/testdata/com/generate_pickles.py
biskit/testdata/com/lig.model
biskit/testdata/com/rec.model
biskit/testdata/com/ref.complex
biskit/testdata/com/raw/lig.pdb
biskit/testdata/com/raw/rec.pdb
biskit/testdata/delphi/1A19_reduced.model
biskit/testdata/delphi/case01.pdb
biskit/testdata/delphi/complex_reduced.model
biskit/testdata/delphi/generate_pickle.py
biskit/testdata/dock/generate_pickles.py
biskit/testdata/dock/generate_pickles.py~
biskit/testdata/dock/hex/1A2P-1A19_hex5.out
biskit/testdata/dock/hex/1A2P-1A19_hex8.out
biskit/testdata/dock/hex/complexes.cl
biskit/testdata/dock/lig/1A19.model
biskit/testdata/dock/lig/1A19_clean.pdb
biskit/testdata/dock/lig/1A19_model.dic
biskit/testdata/dock/rec/1A2P.model
biskit/testdata/dock/rec/1A2P_clean.pdb
biskit/testdata/dock/rec/1A2P_model.dic
biskit/testdata/dssp/3j4q.pdb
biskit/testdata/eedensity/3tgi.ezd.gz
biskit/testdata/exe/exe_ls.dat
biskit/testdata/lig/1A19.pdb
biskit/testdata/lig/1A19.psf
biskit/testdata/lig/1A19_dry.model
biskit/testdata/lig/1A19_lig_original.pdb
biskit/testdata/lig/generate_pickles.py
biskit/testdata/lig_pcr_00/biskit2to3.py
biskit/testdata/lig_pcr_00/generate_pickles.py
biskit/testdata/lig_pcr_00/generate_raw.py
biskit/testdata/lig_pcr_00/traj.dat
biskit/testdata/lig_pcr_00/raw/traj.crd
biskit/testdata/lig_pcr_00/raw/traj_framenames.list
biskit/testdata/lig_pcr_00/raw/traj_ref.pdb
biskit/testdata/md/traj_ens50_peptide.dat
biskit/testdata/pdbclean/citche_capped.pdb
biskit/testdata/pdbclean/foldx_citche.pdb
biskit/testdata/rec/1A2P.pdb
biskit/testdata/rec/1A2P.psf
biskit/testdata/rec/1A2P_dry.model
biskit/testdata/rec/1A2P_rec_original.pdb
biskit/testdata/rec/generate_pickles.py
biskit/testdata/tmalign/1huy_citrine.model
biskit/testdata/tmalign/1huy_citrine.pdb
biskit/testdata/tmalign/1zgp_dsred_dimer.model
biskit/testdata/tmalign/1zgp_dsred_dimer.pdb
biskit/testdata/tmalign/generate_pickles.py
doc/#index.rst#
doc/Makefile
doc/conf.py
doc/index.rst
doc/_build/.buildinfo
doc/_build/.doctrees/environment.pickle
doc/_build/.doctrees/index.doctree
doc/_build/.doctrees/source/biskit.doctree
doc/_build/.doctrees/source/modules.doctree
doc/_build/doctrees/environment.pickle
doc/_build/doctrees/index.doctree
doc/_build/doctrees/source/biskit.doctree
doc/_build/doctrees/source/modules.doctree
doc/_build/doctrees/source/biskit/biskit.AmberPrepParser.doctree
doc/_build/doctrees/source/biskit/biskit.AmberResidueLibrary.doctree
doc/_build/doctrees/source/biskit/biskit.AmberResidueType.doctree
doc/_build/doctrees/source/biskit/biskit.BiskitError.doctree
doc/_build/doctrees/source/biskit/biskit.EHandler.doctree
doc/_build/doctrees/source/biskit/biskit.ErrLog.doctree
doc/_build/doctrees/source/biskit/biskit.LocalPath.doctree
doc/_build/doctrees/source/biskit/biskit.LocalPathError.doctree
doc/_build/doctrees/source/biskit/biskit.LogFile.doctree
doc/_build/doctrees/source/biskit/biskit.PDBCleaner.doctree
doc/_build/doctrees/source/biskit/biskit.PDBError.doctree
doc/_build/doctrees/source/biskit/biskit.PDBModel.doctree
doc/_build/doctrees/source/biskit/biskit.ProfileCollection.doctree
doc/_build/doctrees/source/biskit/biskit.ProfileError.doctree
doc/_build/doctrees/source/biskit/biskit.StdLog.doctree
doc/_build/doctrees/source/biskit/biskit.gnuplot.doctree
doc/_build/doctrees/source/biskit/biskit.hist.doctree
doc/_build/doctrees/source/biskit/biskit.match2seq.doctree
doc/_build/doctrees/source/biskit/biskit.mathUtils.doctree
doc/_build/doctrees/source/biskit/biskit.molUtils.doctree
doc/_build/doctrees/source/biskit/biskit.rmsFit.doctree
doc/_build/doctrees/source/biskit/biskit.tools.doctree
doc/_build/html/.buildinfo
doc/_build/html/genindex.html
doc/_build/html/index.html
doc/_build/html/objects.inv
doc/_build/html/py-modindex.html
doc/_build/html/search.html
doc/_build/html/searchindex.js
doc/_build/html/_modules/index.html
doc/_build/html/_modules/biskit/amberResidueLibrary.html
doc/_build/html/_modules/biskit/amberResidues.html
doc/_build/html/_modules/biskit/errorHandler.html
doc/_build/html/_modules/biskit/errors.html
doc/_build/html/_modules/biskit/gnuplot.html
doc/_build/html/_modules/biskit/hist.html
doc/_build/html/_modules/biskit/logFile.html
doc/_build/html/_modules/biskit/match2seq.html
doc/_build/html/_modules/biskit/mathUtils.html
doc/_build/html/_modules/biskit/molUtils.html
doc/_build/html/_modules/biskit/pdbCleaner.html
doc/_build/html/_modules/biskit/pdbModel.html
doc/_build/html/_modules/biskit/profileCollection.html
doc/_build/html/_modules/biskit/rmsFit.html
doc/_build/html/_modules/biskit/tools.html
doc/_build/html/_modules/biskit/core/localpath.html
doc/_build/html/_sources/index.rst.txt
doc/_build/html/_sources/source/biskit.rst.txt
doc/_build/html/_sources/source/modules.rst.txt
doc/_build/html/_sources/source/biskit/biskit.AmberPrepParser.rst.txt
doc/_build/html/_sources/source/biskit/biskit.AmberResidueLibrary.rst.txt
doc/_build/html/_sources/source/biskit/biskit.AmberResidueType.rst.txt
doc/_build/html/_sources/source/biskit/biskit.BiskitError.rst.txt
doc/_build/html/_sources/source/biskit/biskit.EHandler.rst.txt
doc/_build/html/_sources/source/biskit/biskit.ErrLog.rst.txt
doc/_build/html/_sources/source/biskit/biskit.LocalPath.rst.txt
doc/_build/html/_sources/source/biskit/biskit.LocalPathError.rst.txt
doc/_build/html/_sources/source/biskit/biskit.LogFile.rst.txt
doc/_build/html/_sources/source/biskit/biskit.PDBCleaner.rst.txt
doc/_build/html/_sources/source/biskit/biskit.PDBError.rst.txt
doc/_build/html/_sources/source/biskit/biskit.PDBModel.rst.txt
doc/_build/html/_sources/source/biskit/biskit.ProfileCollection.rst.txt
doc/_build/html/_sources/source/biskit/biskit.ProfileError.rst.txt
doc/_build/html/_sources/source/biskit/biskit.StdLog.rst.txt
doc/_build/html/_sources/source/biskit/biskit.gnuplot.rst.txt
doc/_build/html/_sources/source/biskit/biskit.hist.rst.txt
doc/_build/html/_sources/source/biskit/biskit.match2seq.rst.txt
doc/_build/html/_sources/source/biskit/biskit.mathUtils.rst.txt
doc/_build/html/_sources/source/biskit/biskit.molUtils.rst.txt
doc/_build/html/_sources/source/biskit/biskit.rmsFit.rst.txt
doc/_build/html/_sources/source/biskit/biskit.tools.rst.txt
doc/_build/html/_static/ajax-loader.gif
doc/_build/html/_static/basic.css
doc/_build/html/_static/comment-bright.png
doc/_build/html/_static/comment-close.png
doc/_build/html/_static/comment.png
doc/_build/html/_static/doctools.js
doc/_build/html/_static/documentation_options.js
doc/_build/html/_static/down-pressed.png
doc/_build/html/_static/down.png
doc/_build/html/_static/file.png
doc/_build/html/_static/jquery-3.2.1.js
doc/_build/html/_static/jquery.js
doc/_build/html/_static/minus.png
doc/_build/html/_static/plus.png
doc/_build/html/_static/pygments.css
doc/_build/html/_static/searchtools.js
doc/_build/html/_static/theme_overrides.css
doc/_build/html/_static/theme_unminified.css
doc/_build/html/_static/underscore-1.3.1.js
doc/_build/html/_static/underscore.js
doc/_build/html/_static/up-pressed.png
doc/_build/html/_static/up.png
doc/_build/html/_static/websupport.js
doc/_build/html/_static/css/badge_only.css
doc/_build/html/_static/css/theme.css
doc/_build/html/_static/fonts/Inconsolata-Bold.ttf
doc/_build/html/_static/fonts/Inconsolata-Regular.ttf
doc/_build/html/_static/fonts/Lato-Bold.ttf
doc/_build/html/_static/fonts/Lato-BoldItalic.ttf
doc/_build/html/_static/fonts/Lato-Italic.ttf
doc/_build/html/_static/fonts/Lato-Regular.ttf
doc/_build/html/_static/fonts/RobotoSlab-Bold.ttf
doc/_build/html/_static/fonts/RobotoSlab-Regular.ttf
doc/_build/html/_static/fonts/fontawesome-webfont.eot
doc/_build/html/_static/fonts/fontawesome-webfont.svg
doc/_build/html/_static/fonts/fontawesome-webfont.ttf
doc/_build/html/_static/fonts/fontawesome-webfont.woff
doc/_build/html/_static/fonts/fontawesome-webfont.woff2
doc/_build/html/_static/js/modernizr.min.js
doc/_build/html/_static/js/theme.js
doc/_build/html/source/biskit.html
doc/_build/html/source/modules.html
doc/_build/html/source/biskit/biskit.AmberPrepParser.html
doc/_build/html/source/biskit/biskit.AmberResidueLibrary.html
doc/_build/html/source/biskit/biskit.AmberResidueType.html
doc/_build/html/source/biskit/biskit.BiskitError.html
doc/_build/html/source/biskit/biskit.EHandler.html
doc/_build/html/source/biskit/biskit.ErrLog.html
doc/_build/html/source/biskit/biskit.LocalPath.html
doc/_build/html/source/biskit/biskit.LocalPathError.html
doc/_build/html/source/biskit/biskit.LogFile.html
doc/_build/html/source/biskit/biskit.PDBCleaner.html
doc/_build/html/source/biskit/biskit.PDBError.html
doc/_build/html/source/biskit/biskit.PDBModel.html
doc/_build/html/source/biskit/biskit.ProfileCollection.html
doc/_build/html/source/biskit/biskit.ProfileError.html
doc/_build/html/source/biskit/biskit.StdLog.html
doc/_build/html/source/biskit/biskit.gnuplot.html
doc/_build/html/source/biskit/biskit.hist.html
doc/_build/html/source/biskit/biskit.match2seq.html
doc/_build/html/source/biskit/biskit.mathUtils.html
doc/_build/html/source/biskit/biskit.molUtils.html
doc/_build/html/source/biskit/biskit.rmsFit.html
doc/_build/html/source/biskit/biskit.tools.html
doc/_static/theme_overrides.css
doc/_static/theme_unminified.css
doc/_templates/autosummary/class.rst
doc/_templates/autosummary/class_with_details.rst
doc/_templates/autosummary/class_with_details.rst~
doc/_templates/autosummary/module.rst
doc/_templates/autosummary/module_with_details.rst
doc/_templates/autosummary/module_with_details.rst~
doc/extensions/__init__.py
doc/extensions/autoautosummary.py
doc/extensions/autoautosummary.py~
doc/extensions/__pycache__/__init__.cpython-35.pyc
doc/extensions/__pycache__/autoautosummary.cpython-35.pyc
doc/source/biskit.rst
doc/source/modules.rst
doc/source/biskit/biskit.AmberPrepParser.rst
doc/source/biskit/biskit.AmberResidueLibrary.rst
doc/source/biskit/biskit.AmberResidueType.rst
doc/source/biskit/biskit.BiskitError.rst
doc/source/biskit/biskit.EHandler.rst
doc/source/biskit/biskit.ErrLog.rst
doc/source/biskit/biskit.LocalPath.rst
doc/source/biskit/biskit.LocalPathError.rst
doc/source/biskit/biskit.LogFile.rst
doc/source/biskit/biskit.PDBCleaner.rst
doc/source/biskit/biskit.PDBError.rst
doc/source/biskit/biskit.PDBModel.rst
doc/source/biskit/biskit.ProfileCollection.rst
doc/source/biskit/biskit.ProfileError.rst
doc/source/biskit/biskit.StdLog.rst
doc/source/biskit/biskit.gnuplot.rst
doc/source/biskit/biskit.hist.rst
doc/source/biskit/biskit.match2seq.rst
doc/source/biskit/biskit.mathUtils.rst
doc/source/biskit/biskit.molUtils.rst
doc/source/biskit/biskit.rmsFit.rst
doc/source/biskit/biskit.tools.rst
scripts/a_ensemble.py
scripts/a_trajRmsd.py
scripts/amber2traj.py
scripts/amber_ensembleMD.py
scripts/bis.py
scripts/epydoc2sphinx.sh
scripts/py2to3.zsh
scripts/replace_imports.py
scripts/traj2ensemble.py
scripts/trajpool2ensemble.py