from .msa import MultipleSequenceAlignment, SequenceArray
from .msa import readAlignment, readSequences, PairwiseAlign, CalcIdentityMatrix, cluster_sizes

from .pdb import ProteinStructure
from .pdb import readPDB, readAlphaFold, CalcDistanceMatrix

#from .TreeBuilders import NJTree, UPGMATree, MuscleAlign, FastTree
