LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
biothings/.git-info
biothings/__init__.py
biothings/__main__.py
biothings.egg-info/PKG-INFO
biothings.egg-info/SOURCES.txt
biothings.egg-info/dependency_links.txt
biothings.egg-info/entry_points.txt
biothings.egg-info/requires.txt
biothings.egg-info/top_level.txt
biothings/cli/__init__.py
biothings/cli/dataplugin.py
biothings/cli/dataplugin_hub.py
biothings/cli/utils.py
biothings/cli/web_app.py
biothings/hub/__init__.py
biothings/hub/default_config.py
biothings/hub/upgrade.py
biothings/hub/api/__init__.py
biothings/hub/api/manager.py
biothings/hub/api/handlers/__init__.py
biothings/hub/api/handlers/base.py
biothings/hub/api/handlers/log.py
biothings/hub/api/handlers/shell.py
biothings/hub/api/handlers/upload.py
biothings/hub/api/handlers/ws.py
biothings/hub/autoupdate/__init__.py
biothings/hub/autoupdate/dumper.py
biothings/hub/autoupdate/uploader.py
biothings/hub/databuild/__init__.py
biothings/hub/databuild/auto_archive.py
biothings/hub/databuild/backend.py
biothings/hub/databuild/buildconfig.py
biothings/hub/databuild/builder.py
biothings/hub/databuild/differ.py
biothings/hub/databuild/mapper.py
biothings/hub/databuild/prebuilder.py
biothings/hub/databuild/syncer.py
biothings/hub/dataexport/__init__.py
biothings/hub/dataexport/ids.py
biothings/hub/dataindex/__init__.py
biothings/hub/dataindex/auto_snapshot_cleanup.py
biothings/hub/dataindex/idcache.py
biothings/hub/dataindex/indexer.py
biothings/hub/dataindex/indexer_cleanup.py
biothings/hub/dataindex/indexer_payload.py
biothings/hub/dataindex/indexer_registrar.py
biothings/hub/dataindex/indexer_schedule.py
biothings/hub/dataindex/indexer_task.py
biothings/hub/dataindex/snapshooter.py
biothings/hub/dataindex/snapshot_cleanup.py
biothings/hub/dataindex/snapshot_registrar.py
biothings/hub/dataindex/snapshot_repo.py
biothings/hub/dataindex/snapshot_task.py
biothings/hub/datainspect/__init__.py
biothings/hub/datainspect/inspector.py
biothings/hub/dataload/__init__.py
biothings/hub/dataload/dumper.py
biothings/hub/dataload/source.py
biothings/hub/dataload/storage.py
biothings/hub/dataload/sync.py
biothings/hub/dataload/uploader.py
biothings/hub/dataload/validator.py
biothings/hub/dataplugin/__init__.py
biothings/hub/dataplugin/assistant.py
biothings/hub/dataplugin/docker_dumper.py.tpl
biothings/hub/dataplugin/dumper.py.tpl
biothings/hub/dataplugin/manager.py
biothings/hub/dataplugin/subuploader.py.tpl
biothings/hub/dataplugin/uploader.py.tpl
biothings/hub/datarelease/__init__.py
biothings/hub/datarelease/publisher.py
biothings/hub/datarelease/releasenote.py
biothings/hub/datatransform/__init__.py
biothings/hub/datatransform/ciidstruct.py
biothings/hub/datatransform/datatransform.py
biothings/hub/datatransform/datatransform_api.py
biothings/hub/datatransform/datatransform_mdb.py
biothings/hub/datatransform/histogram.py
biothings/hub/standalone/__init__.py
biothings/hub/standalone/validators.py
biothings/tests/__init__.py
biothings/tests/hub.py
biothings/tests/web.py
biothings/utils/__init__.py
biothings/utils/aws.py
biothings/utils/backend.py
biothings/utils/common.py
biothings/utils/configuration.py
biothings/utils/dataload.py
biothings/utils/diff.py
biothings/utils/diff_common.py
biothings/utils/doc_traversal.py
biothings/utils/docs.py
biothings/utils/document_generator.py
biothings/utils/dotfield.py
biothings/utils/dotstring.py
biothings/utils/es.py
biothings/utils/es_reindex.py
biothings/utils/exceptions.py
biothings/utils/exclude_ids.py
biothings/utils/hub.py
biothings/utils/hub_db.py
biothings/utils/info.py
biothings/utils/inspect.py
biothings/utils/jmespath.py
biothings/utils/jsondiff.py
biothings/utils/jsonpatch.py
biothings/utils/jsonschema.py
biothings/utils/keygen.py
biothings/utils/loggers.py
biothings/utils/manager.py
biothings/utils/mongo.py
biothings/utils/parallel.py
biothings/utils/parallel_mp.py
biothings/utils/parsers.py
biothings/utils/redirect_streams.py
biothings/utils/redis.py
biothings/utils/serializer.py
biothings/utils/shelve.py
biothings/utils/sqlite3.py
biothings/utils/storage.py
biothings/utils/version.py
biothings/utils/workers.py
biothings/web/__init__.py
biothings/web/__main__.py
biothings/web/applications.py
biothings/web/connections.py
biothings/web/launcher.py
biothings/web/analytics/__init__.py
biothings/web/analytics/channels.py
biothings/web/analytics/events.py
biothings/web/analytics/notifiers.py
biothings/web/auth/__init__.py
biothings/web/auth/authn.py
biothings/web/auth/oauth_mixins.py
biothings/web/handlers/__init__.py
biothings/web/handlers/_fastapi.py
biothings/web/handlers/_flask.py
biothings/web/handlers/base.py
biothings/web/handlers/query.py
biothings/web/handlers/services.py
biothings/web/options/__init__.py
biothings/web/options/descriptions.py
biothings/web/options/manager.py
biothings/web/options/openapi.py
biothings/web/options/swagger.py
biothings/web/query/__init__.py
biothings/web/query/builder.py
biothings/web/query/engine.py
biothings/web/query/formatter.py
biothings/web/query/pipeline.py
biothings/web/services/__init__.py
biothings/web/services/health.py
biothings/web/services/metadata.py
biothings/web/services/namespace.py
biothings/web/services/query.py
biothings/web/settings/__init__.py
biothings/web/settings/configs.py
biothings/web/settings/default.py
biothings/web/settings/validators.py
biothings/web/templates/__init__.py
biothings/web/templates/api.html
biothings/web/templates/home.html
tests/test_config.py