prefix	abbreviation	name	description
FAIRsharing.02xjaW	CyVerse Data Common Repository	None	The Data Commons provides services to manage, organize, preserve, publish, discover, and reuse data. Using our pipelines, you can easily publish data to the NCBI or directly to the CyVerse Data Commons. CyVerse Curated Data are stable and have DOIs. Community Released Data are maintained by community members and may not be permanent.
FAIRsharing.0A9kNV	FAIR Metrics - Use FAIR Vocabularies	FM-I2	FM-I2 is a metric concerning whether the metadata values and qualified relations of a resource are themselves FAIR, for example, terms from open, community-accepted vocabularies published in an appropriate knowledge-exchange format. It is not possible to unambiguously interpret metadata represented as simple keywords or other non-qualified symbols. For interoperability, it must be possible to identify data that can be integrated like-with-like. This requires that the data, and the provenance descriptors of the data, should (where reasonable) use vocabularies and terminologies that are, themselves, FAIR. As such, IRIs representing the vocabularies used for (meta)data must be provided. This metric applies to part I2 of the FAIR Principles.
FAIRsharing.0apk2r	smartAPI repository	None	The smartAPI repository is a human and machine accessible database of web-based application programming interfaces that are described using the smartAPI specification (based on the OpenAPI initiative).
FAIRsharing.0Hsbor	A database for spatially resolved transcriptomes	SpatialDB	Spatially resolved transcriptomics providing gene expression profiles with positional information is key to tissue function and fundamental to disease pathology. SpatialDB is the first public database that specifically curates spatially resolved transcriptomic data from published papers, aiming to provide a comprehensive and accurate resource of spatial gene expression profiles in tissues. Currently, SpatialDB contains detailed information of 24 datasets generated by 8 spatially resolved transcriptomic techniques. SpatialDB allows users to browse the spatial gene expression profile of all the 8 techniques online and compare the spatial gene expression profile of any two datasets generated by the same or different techniques side by side. It provides spatially variable (SV) genes identified by SpatialDE and trendsceek, as well as functional enrichment annotation of SV genes.
FAIRsharing.0oOPKg	ThaleMine	ThaleMine	ThaleMine enables you to analyze Arabidopsis thaliana genes, proteins, gene expression, protein-protein interactions, orthologs, and more. Use plain text or structured queries for interactive gene and protein reports.
FAIRsharing.0VV4KB	Environmental Data Portal	EnviDat	EnviDat is the environmental data portal and repository developed by the Swiss Federal Research Institute WSL. The portal provides unified and managed access to environmental monitoring and research data. The portal has the capability to host and publish data sets. While sharing of data is centrally facilitated, data management remains decentralised and the know-how and responsibility to curate research data remains with the original data providers.
FAIRsharing.10960p	International Classification of Wellness	ICW	Record does not exist anymore: International Classification of Wellness. The record with identifier content https://doi.org/10.25504/FAIRsharing.10960p was invalid.
FAIRsharing.11889	mz peptide and protein Identification Markup Language	mzIdentML	A large number of different proteomics search engines are available that produce output in a variety of different formats. It is intended that mzIdentML will provide a common format for the export of identification results from any search engine. The format was originally developed under the name AnalysisXML as a format for several types of computational analyses performed over mass spectra in the proteomics context. It has been decided to split development into two formats: mzIdentML for peptide and protein identification, and mzQuantML, covering quantitative proteomic data derived from MS.
FAIRsharing.119q9t	UMLS Semantic Network	None	The US National Library of Medicine has developed the Unified Medical Language System (UMLS), whose goal it is to provide integrated access to a large number of biomedical resources by unifying the vocabularies that are used to access those resources. The UMLS Metathesaurus interrelates more than 150 controlled vocabularies in the biomedical domain. The UMLS coverage is quite extensive, including not only many concepts in clinical medicine, but also a large number of concepts applicable to the broad domain of the life sciences. In order to provide an overarching conceptual framework for all UMLS concepts, the UMLS Semantic Network, an upper-level ontology, has been developed. The Semantic Network provides a consistent categorization of all concepts represented in the UMLS Metathesaurus. The links between the semantic types provide the structure for the network and represent important relationships in the biomedical domain. The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types.
FAIRsharing.12yd2z	The UCSC Archaeal Genome Browser	None	The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.
FAIRsharing.13cdzp	Influenza Virus Resource	None	Influenza Virus Resource presents data obtained from the NIAID Influenza Genome Sequencing Project as well as from GenBank, combined with tools for flu sequence analysis, annotation and submission to GenBank. In addition, it provides links to other resources that contain flu sequences, publications and general information about flu viruses.
FAIRsharing.15025c	Postscript Format	Postscript Format	THE POSTSCRIPT® LANGUAGE is a simple interpretive programming language with powerful graphics capabilities. Its primary application is to describe the appearance of text, graphical shapes, and sampled images on printed or displayed pages, according to the Adobe imaging model. A program in this language can communicate a description of a document from a composition system to a printing system or control the appearance of text and graphics on a display. The description is high-level and device-independent.
FAIRsharing.16mqgq	BioMed Central - Minimum Standards of Reporting Checklist	None	This is the main checklist/guideline for data deposition and formatting for papers submitted to a BioMed Central journal. This policy is linked to from each journal's Information for Authors page.
FAIRsharing.16v73e	Autism Brain Imaging Data Exchange	ABIDE	Autism Brain Imaging Data Exchange (ABIDE) is a resource serving Autism spectrum disorders (ASD) data. The Autism Brain Imaging Data Exchange (ABIDE) provides previously-collected resting state functional magnetic resonance imaging (R-fMRI) datasets for the purpose of data sharing in the broader scientific community. ABIDE is intended to facilitate discovery science and comparisons across samples. In accordance with HIPAA guidelines and 1000 Functional Connectomes Project / INDI protocols, all datasets are anonymous, with no protected health information included. Data is available for download from the ABIDE website and for searching via partner websites.
FAIRsharing.175hsz	General Formal Ontology	GFO	The General Formal Ontology is a top-level ontology for conceptual modeling, which is being constantly further developed by Onto-Med. It includes elaborations of categories like objects, processes, time and space, properties, relations, roles, functions, facts, and situations. Moreover, we are working on an integration with the notion of levels of reality in order to more appropriately capture entities in the material, mental, and social areas.
FAIRsharing.178BmT	Portail Data INRAE	Data INRAE	Portail Data INRAE is offered by INRAE as part of its mission to open the results of its research. INRAE is Europe’s top agricultural research institute and the world’s number two centre for the agricultural sciences.  Data INRAE will share research data in relation to food, nutrition, agriculture and environment. It includes experimental, simulation and observation data, omics data, survey and text data. Only data produced by or in collaboration with INRAE will be hosted in the repository, but anyone can access the metadata and the open data. Data INRAE is built on software from the Dataverse Project.
FAIRsharing.17r4y2	BuG@Sbase	BuG@Sbase	BuG@Sbase is a microbial gene expression and comparative genomic database containing microarray datasets.
FAIRsharing.17x4p4	American Geophysical Union Data and Software for Authors Guidance	AGU Data and Software Guidance	AGU affirmed in its 2012 position statement that “Earth and space science data should be widely accessible in multiple formats and long‐term preservation of data is an integral responsibility of scientists and sponsoring institutions.” Following this statement and to advance scientific exploration and discovery, and allow a full assessment of results presented in AGU’s journals, all data necessary to understand, evaluate, replicate, and build upon the reported research must be made available and accessible whenever possible.
FAIRsharing.17z0yf	iSpyBio	iSpyBio	iSpyBio is an intelligent and unbiased search engine for Life scientists. It ranks reagents by the number of data such as publications, reviews, characterization images and tested applications. It displays over 500,000 reagents such as antibodies, proteins, ELISA kits and biomolecules. iSpyBio’s proprietary search algorithm is unique and rapidly analyzes the end-users search query against its large database. Powerful filters allow the user to enhance the search results, for example if they want a protein expressed in yeast or an antibody that only works in mouse. As iSpyBio syncs with supplier and other public databases, it is always up-to-date. This allows iSpyBio to exclude out of stock items but show the most recent testing results and peer-reviewed publications.
FAIRsharing.18je7e	Ontology for Newborn Screening Follow-up and Translational Research	ONSTR	Ontology for Newborn Screening Follow-up and Translational Research (ONSTR) is an application ontology for representing data entities, practices and knowledge in the domain of newborn screening and short-­‐ and long-­‐term follow-­‐up of patients diagnosed with inheritable and congenital disorders. No project homepage could be found, and the resource has not been updated recently. Please get in touch if you have information about this resource.
FAIRsharing.19ne3m	Genomics: GTL Program Information and Data Sharing Policy (Office of Biological and Environmental Research)	GTL Program Information and Data Sharing Policy	The Office of Biological and Environmental Research (OBER) will require that all publishable information resulting from GTL funded research must conform to community recognized standard formats when they exist, be clearly attributable, and be deposited within a community recognized public database(s) appropriate for the research conducted. Furthermore, all experimental data obtained as a result of GTL funded research must be kept in an archive maintained by the Principal Investigator (PI) for the duration of the funded project. Any publications resulting from the use of shared experimental data must accurately acknowledge the original source or provider of the attributable data. The publication of information resulting from GTL funded research must be consistent with the Intellectual Property provisions of the contract under which the publishable information was produced.
FAIRsharing.1b84nz	Behaviour Change Technique Taxonomy	BCT Taxonomy	The BCT Taxonomy Version 1 (BCTTv1) project are to (i) develop a reliable and generalisable nomenclature of behaviour change techniques as a method for specifying, evaluating and implementing complex behavioural change interventions and (ii) achieve its multidisciplinary and international acceptance and use to allow for its continuous development. Although this resource is available at BioPortal, and described at the listed homepage, the project homepage cannot be found. Please get in touch if you have any information
FAIRsharing.1bg18n	Life Sciences Domain Analysis Model	LS-DAM	The LS DAM v2.2.1 is comprised of 130 classes and covers several core areas including Experiment, Molecular Biology, Molecular Databases and Specimen. Nearly half of these classes originate from the BRIDG model, emphasizing the semantic harmonization between these models. Validation of the LS DAM against independently derived information models, research scenarios and reference databases supports its general applicability to represent life sciences research.
FAIRsharing.1bnhyh	Databases of Orthologous Promoters	DoOP	DoOP is a database of eukaryotic promoter sequences (upstream regions), aiming to facilitate the recognition of regulatory sites conserved between species. Based on the Arabidopsis thaliana and Homo sapiens genome annotation, this resource is also a collection of the orthologous promoter sequences from Viridiplantae and Chordata species. The database can be used to find promoter clusters of different genes as well as positions of the conserved regions and transcription start sites, which can be viewed graphically.
FAIRsharing.1C9Boz	iPPI-DB - Inhibitors of Protein-Protein Interaction Database	iPPI-DB	IPPI-DB is a database of modulators of protein-protein interactions. It contains exclusively small molecules and therefore no peptides. The data are retrieved from the literature either peer reviewed scientific articles or world patents. A large variety of data is stored within IPPI-DB: structural, pharmacological, binding and activity profile, pharmacokinetic and cytotoxicity when available, as well as some data about the PPI targets themselves.
FAIRsharing.1ctakh	Mathematics Markup Language	MathML	A product of the W3C Math Working Group, MathML is a low-level specification for describing mathematics as a basis for machine to machine communication which provides a much needed foundation for the inclusion of mathematical expressions in Web pages. It is also important in publishing workflows for science and technology and wherever mathematics has to be handled by software.
FAIRsharing.1d0vs7	Mediterranean Founder Mutation Database	MFMD	A comprehensive database established to offer a web-based access to founder mutation data in Mediterranean population. The database provides an overview about the spectrum of founder mutations found in Mediterranean population to the scientific community. Furthermore, MFMD will help scientists to design more efficient diagnostic tests and provides beneficial information to understand the history and the migration events of the Mediterranean population.
FAIRsharing.1dppze	Mouse Experimental Design Ontology	MEDO	A representation of experimental design for high-throughput mouse analysis pipelines.
FAIRsharing.1esk4f	Artificial Intelligence Rheumatology Consultant System Ontology	AI/RHEUM	AI/RHEUM is used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations, tissue biopsy results, and intermediate diagnosis hypotheses. Findings and hypotheses, which include definitions, are used to reach diagnostic conclusions with definite, probable, or possible certainty. AI/RHEUM is used by clinicians and informatics researchers.
FAIRsharing.1ety1h	GeneSigDB: a manually curated database and resource for analysis of gene expression signatures	None	Gene Signature DataBase (GeneSigDB) is a database of gene signatures (or gene sets) that have been extracted and manually curated from articles that are indexed by PubMed.
FAIRsharing.1evfpc	Computer Retrieval of Information on Scientific Projects Thesaurus	CRISP	CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains.
FAIRsharing.1ex4pm	MAPPER-2	mapperdb	This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcript, the region scanned extends from 10,000bp upstream of the transcript start to 50bp downstream of the coding sequence start. Therefore, the database contains putative binding sites in the gene promoter and in the initial introns and non-coding exons. Information displayed for each putative binding site includes the transcription factor name, its position (absolute on the chromosome, or relative to the gene), the score of the prediction, and the region of the gene the site belongs to. If the selected gene has homologs in any of the other two organisms, the program optionally displays the putative TFBSs in the homologs.
FAIRsharing.1frnts	UK Solar System Data Centre Data Archive	UKSSDC	The UK Solar System Data Centre (UKSSDC) is the Natural Environment Research Council's (NERC) Designated Data Centre for the Solar terrestrial physics and chemistry. It provides a central archive and data centre facility for Solar System science in the UK. The UKSSDC supports data archives for the whole UK solar system community encompassing solar, inter-planetary, magnetospheric, ionospheric and geomagnetic science. The UKSSDC is part of RAL Space based at the STFC run Rutherford Appleton Laboratory in Oxfordshire.
FAIRsharing.1g5j3h	Biomedical Topics	BMT	An ontology of biological and biomedical topics, created from merging the EDAM Topics sub-ontology with auxiliary topics that are out of scope of EDAM.
FAIRsharing.1gn47b	Target Central Resource Database	TCRD	TCRD is the central resource behind the Illuminating the Druggable Genome Knowledge Management Center (IDG-KMC). TCRD contains information about human targets, with special emphasis on four families of targets that are central to the NIH IDG initiative: GPCRs, kinases, ion channels and nuclear receptors. Olfactory GPCRs (oGPCRs) are treated as a separate family. A key aim of the KMC is to classify the development/druggability level of targets. The official public portal for TCRD is Pharos (pharos.nih.gov). Based on modern web design principles the Pharos interface provides facile access to all data types collected by the KMC. Given the complexity of the data surrounding any target, efficient and intuitive visualization has been a high priority, to enable users to quickly navigate & summarize search results and rapidly identify patterns. A critical feature of the interface is the ability to perform flexible search and subsequent drill down of search results. Underlying the interface is a RESTful API that provides programmatic access to all KMC data, allowing for easy consumption in user applications.
FAIRsharing.1gx1wq	Norway IPT - GBIF Norway	None	GBIF Norway is the Norwegian participant node in the Global Biodiversity Information Facility, GBIF. They make primary data on biological diversity from the Norwegian collections and observation databases freely available and coordinate and support GBIF-related activities and data use in Norway.
FAIRsharing.1h49c6	Sleep Domain Units Ontology	UNITSONT	An ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application. No official homepage for this resource can be found.
FAIRsharing.1h7t5t	National Database for Clinical Trials related to Mental Illness	NDCT	NDCT is an informatics platform for the sharing of clinical trial data funded by the National Institute of Mental Health. NDCT is a part of the NIMH Data Archive (NDA), powered by the NDAR (National Database for Autism Research) infrastructure.
FAIRsharing.1h7yt4	Swiss-Czech Proteomics Server	SWICZ	Proteomics database for streptomyces and caulobacter and neisseria. Unique database in the field, containing knowledge based data of time series of protein expression for various stages of development of the given species.
FAIRsharing.1hqd55	Structural Biology Data Grid	SBGrid-DG	The Structural Biology Data Grid (SBGrid-DG) community-driven repository to preserve primary experimental datasets that support scientific publications. The SBGrid Data Bank is an open source research data management system enabling Structural Biologists to preserve x-ray diffraction data and to make it accessible to the broad research community.
FAIRsharing.1j9m75	MIAPE: Gel Informatics	MIAPE-GI	This module identifies the minimum information required to report an informatics analysis performed with gel electrophoresis images, in a manner compliant with the aims as laid out in the ‘MIAPE Principles’ document.
FAIRsharing.1jihTO	International Ocean Discovery Program Janus Web Database	Janus	The Janus database contains data from DSDP, ODP, and Phase I of the Integrated Ocean Drilling Program. This includes data gathered between 1968 and 2008 as a result of Deep Sea Drilling Project (DSDP; 1968–1984) Legs 1–96, Ocean Drilling Program (ODP; 1985–2003) Legs 101–210, and IODP-I Expeditions 301–312.
FAIRsharing.1jKfji	Research Organization Registry	ROR	ROR is a community-led project to develop an open, sustainable, usable, and unique identifier for every research organization in the world. Implementation of ROR IDs in scholarly infrastructure and metadata will enable more efficient discovery and tracking of research outputs across institutions and funding bodies.
FAIRsharing.1jwkjn	Electronic Medical Records and Genomics	eMERGE	eMERGE is a national network organized and funded by the National Human Genome Research Institute (NHGRI) that combines DNA biorepositories with electronic medical record (EMR) systems for large scale, high-throughput genetic research in support of implementing genomic medicine.
FAIRsharing.1ky0cs	UK Data Service	UKDS	UK Data Service (UKDS) provides unified access to the UK's largest collection of social, economic and population data for research and teaching purposes covering a range of different disciplines. The majority of our data are fully anonymised, unless otherwise specified in the relevant online catalogue records, and are therefore not suitable for genealogical users or family historians. The UK Data Service is funded by the Economic and Social Research Council (ESRC) to meet the data needs of researchers, students and teachers from all sectors, including academia, central and local government, charities and foundations, independent research centres, think tanks, and business consultants and the commercial sector.
FAIRsharing.1m6pt7	UniPathway	UniPathway	UniPathway is a manually curated resource of metabolic pathways for the UniProtKB/Swiss-Prot knowledgebase. It provides a structured controlled vocabulary to describe the role of a protein in a metabolic pathway.
FAIRsharing.1mapgk	NIDDK Information Network	dkNET	The NIDDK Information Network provides access to large pools of data relevant to the mission of NIDDK. The dkNET portal contains information about research resources such as antibodies, vectors and mouse strains, data, protocols, and literature.
FAIRsharing.1mk4v9	STrengthening the Reporting of OBservational studies in Epidemiology	STROBE	STROBE was created by an international, collaborative initiative of epidemiologists, methodologists, statisticians, researchers and journal editors involved in the conduct and dissemination of observational studies, with the common aim of STrengthening the Reporting of OBservational studies in Epidemiology.
FAIRsharing.1nshwd	Open Source Brain	OSB	Open Source Brain is a resource for sharing and collaboratively developing computational models of neural systems.
FAIRsharing.1nwy41	Transmembrane Helices in Genome Sequences	THGS	A web based database of Transmembrane Helices in Genome Sequences.
FAIRsharing.1ong6b	TogoVar	TogoVar	TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them. TogoVar provides variant frequencies in the Japanese population that have been aggregated across research projects. Two available datasets, JGA-NGS and JGA-SNP, are obtained by aggregating individual genomic data that have been registered in the NBDC Human Database / Japanese Genotype-phenotype Archive (JGA). In addition, TogoVar integrates information related to genotypes or phenotypes that has been compiled independently in a variety of different databases and provides information for interpreting variants in a one-stop, easy-to-understand manner. TogoVar has been developed as a joint research project of National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST) and Database Center for Life Science (DBCLS), Joint Support-Center for Data Science Research, Research Organization of Information and Systems (ROIS) .
FAIRsharing.1r2ekx	Elsevier - Lancet Infectious Diseases - Information for Authors	None	The Information for Authors page contains a broad range of guidelines for publishing in Lancet Infectious Diseases. With regards to data deposition, novel gene sequences should be deposited in a public database (GenBank, EMBL, or DDBJ), and the accession number provided. Authors of microarray papers should include in their submission the information recommended by the MIAME guidelines. Authors should also submit their experimental details to one of the publicly available databases: ArrayExpress or GEO.
FAIRsharing.1sfhp3	Donders Repository	DR	The Donders Institute for Brain, Cognition and Behavior at the Radboud University created the Donders Repository for archiving, preserving and sharing the research data generated and processed at the institute.
FAIRsharing.1sgm8q	BioModels Ontology	None	The BioModels Ontology is an OWL Representation of the models in the BioModels repository. This resource has not been updated recently within BioPortal, and no official homepage can be found, therefore we have marked its status as Uncertain. Please get in touch with us if you have any information on this project.
FAIRsharing.1t5ws6	Data Documentation Initiative Lifecycle	DDI-Lifecycle	Data Documentation Initiative (DDI) Lifecycle (DDI-Lifecycle, DDI-L) is designed to document and manage data across the entire life cycle, from conceptualization to data publication, analysis and beyond. The freely available international DDI standards describe data that result from observational methods in the social, behavioral, economic, and health sciences. DDI is used to document data in over 80 countries of the world. It encompasses all of the DDI-Codebook specification and extends it. Based on XML Schemas, DDI-Lifecycle is modular and extensible.
FAIRsharing.1Uw3Q9	Hydra digital repository	Hydra	The Hydra repository is a digital archive for the University of Hull. It has been developed to hold, manage, preserve and provide access to the growing body of digital material generated through the research, teaching and administrative activities of the University.
FAIRsharing.1v4zw7	OmicsDB	ODB	OmicsDB is a database for the storage and management of omics data and auxiliary information. The database contains cross-species, cross-technique and cross-types. It offers user-submission tools of which aim to reduce the work revolving adherence to standards. The resource homepage is currently unavailable. If you have any information on the current status of this resource, please contact us.
FAIRsharing.1v9vsL	i5k Workspace@NAL	i5k Workspace@NAL	The i5k Workspace@NAL has two main goals. First, it aims to help the i5k ‘data producers’, in particular ‘orphaned’ groups without the technical or financial means for genome hosting, at the interface of sequence retrieval and analysis. Specifically, it aims to help them access, visualize, curate and disseminate data once it has been received from the sequencing center. Second, it aims to provide a unified framework for ‘data consumers’ to retrieve relevant genomic information from data providers.
FAIRsharing.1wm8em	Disease core ontology applied to Rare Diseases	HRDO	This resource was designed during a PhD in medical informatics (funded by INSERM, 2010-2012). Its components are (i) a core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and (ii) an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org). </ br> Research experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr).  Current production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database. This ontology is now available on Bioportal.
FAIRsharing.1xr6v0	Surgical Secondary Events	SSE	Memorial Sloan-Kettering Cancer Center Surgical Secondary Events Ontology (Adverse Events)
FAIRsharing.1y63n8	MorphoBank	MorphoBank	MorphoBank provides a digital archive of biodiversity and evolutionary research data, specifically systematics (the science of determining the evolutionary relationships among species). MorphoBank aids development of the Tree of Life - the genealogy of all living and extinct species. Heritable features - both genotypes (e.g., DNA sequences) and phenotypes (e.g., anatomy, behavior, physiology) are stored as part of the Tree of Life project. While the genomic part of this work is archived at the National Center for Biotechnology Information (NCBI), MorphoBank is part of the infrastructure for storing and sharing phenotype data, including information on anatomy, physiology, behavior and other features of species. One can think of MorphoBank as two databases in one: one that permits researchers to upload images and affiliate data with those images (labels, species names, etc.) and a second database that allows researchers to upload morphological data and affiliate it with phylogenetic matrices. In both cases, MorphoBank is project-based, meaning a team of researchers can create a project and share the images and associated data exclusively with each other. When a paper associated with the project is published, the research team can make their data permanently available for view on MorphoBank where it is now archived.   The phylogenetic matrix aspect of MorphoBank is designed to aid systematists working alone or in teams to build large phylogenetic trees using morphology (anatomy, histology, neurology, or any aspect of phenotypes) or a combination of morphology and molecular data.
FAIRsharing.1y79y9	GeneWeaver	GeneWeaver	The GeneWeaver data and analytics website is a publically available resource for storing, curating and analyzing sets of genes from heterogeneous data sources. The system enables discovery of relationships among genes, variants, traits, drugs, environments, anatomical structures and diseases implicitly found through gene set intersections. By enumerating the common and distinct biological molecules associated with all subsets of curated or user submitted groups of gene sets and gene networks, GeneWeaver empowers users with the ability to construct data driven descriptions of shared and unique biological processes, diseases and traits within and across species.
FAIRsharing.1z28wz	suicideonto	suicideo	ontology for suicidology
FAIRsharing.1z88ee	BCCM/ULC Cyanobacteria Collection	BCCM/ULC	BCCM/ULC is a small and dedicated public collection, currently containing one of the largest collections of documented (sub)polar cyanobacteria worldwide. The BCCM/ULC collection is hosted by the Centre for Protein Engineering (the Unit) of the University of Liège. The host Unit is very active in research projects concerning the cyanobacterial diversity and biogeography, with a focus on polar biotopes. The approach used is polyphasic, including the isolation of strains and culture-independent methods (DGGE, clone libraries, pyrosequencing based on the ribosomal operon sequences). The participation to field expeditions in the Antarctic and Arctic has enabled to collect samples in many locations. Moreover, taxonomic research is carried out by the host Unit to improve the classification of the cyanobacterial phylum. It is based on a polyphasic approach combining the morphological and molecular characterizations of the strains.
FAIRsharing.1zmmrI	VOEvent Transport Protocol	None	The IVOA VOEvent Recommendation defines a means of describing transient celestial events but, purposely, remains silent on the topic of how those descriptions should be transmitted. This document formalizes a TCP-based protocol for VOEvent transportation that has been in use by members of the VOEvent community for several years and discusses the topology of the event distribution network. It is intended to act as a reference for the production of compliant protocol implementations.
FAIRsharing.20df5w	ENCODE peak information Format	None	The ENCODE peak information Format is used to provide called regions of signal enrichment based on pooled, normalized (interpreted) data.
FAIRsharing.20sbr9	Bioschemas Dataset Profile		The Bioschemas Dataset Profile describes datasets in the life-sciences using Schema.org-like annotation.  The Bioschemas project aims to improve data interoperability in life sciences the use of schema.org markup. This structured information then makes it easier to discover, collate and analyse distributed data. 
FAIRsharing.21d998	European Data Format	EDF	The European Data Format (EDF) is a simple and flexible format for exchange and storage of multichannel biological and physical signals. More information http://www.edfplus.info
FAIRsharing.21gwxs	WHO Adverse Reaction Terminology	WHO-ART	WHO Adverse Reaction Terminology is a standardization of the vocabulary for adverse reactions.
FAIRsharing.21tjj7	Leiden Open Variation Database	LOVD	The Leiden Open Variation Database (LOVD) provides a flexible, freely available tool for gene-centered collection and display of DNA variations. LOVD also stores patient-centered data, NGS data, and variants outside of genes.
FAIRsharing.22j4p7	Plant Anatomy	PO_PAE	Plant Anatomy is a controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. This standard is now part of PO.
FAIRsharing.22z3re	MouseMine @ MGI	MouseMine	A database of integrated mouse data from MGI, powered by InterMine. MouseMine is member of InterMOD, a consortium of model organism databases dedicated to making cross-species data analysis easier through ongoing coordination and collaborative system development.
FAIRsharing.23th83	GeoSpecies Ontology	GeoSpecies	This ontology was designed to help integrate species concepts with species occurrences, gene sequences, images, references and geographical information.
FAIRsharing.24yjfc	Habronattus Courtship Ontology	HC	A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms. An ontology for courtship behavior of the spider Habronattus californicus.
FAIRsharing.25k4yp	Fast Healthcare Interoperability Resources	FHIR	FHIR (Fast Healthcare Interoperability Resources) is designed to enable information exchange to support the provision of healthcare in a wide variety of settings. The specification builds on and adapts modern, widely used RESTful practices to enable the provision of integrated healthcare across a wide range of teams and organizations. The intended scope of FHIR is broad, covering human and veterinary, clinical care, public health, clinical trials, administration and financial aspects. The standard has been developed by an International group of people and is intended for global use and in a wide variety of architectures and scenarios.
FAIRsharing.262bth	mz5	mz5	mz5 is a complete reimplementation of the mzML ontology that is based on the efficient, industrial strength storage backend HDF5.
FAIRsharing.265acy	LINCS Pilot Phase 1 Metadata Standards: Primary Cells	LINCS 1: Primary Cells	The LINCS Pilot Phase 1 metadata standards annotate reagents outside the context of the experiments in which they were used. The underlying theme among all cell types is their association with a tissue or organ from which the cells were derived.
FAIRsharing.26dmba	mz Markup Language	mzML	mzML was formed to amalgamate two formats for encoding raw spectrometer data; mzData developed by the PSI, and, mzXML developed at the Seattle Proteome Center at the Institute for Systems Biology. The PSI, with full participation by the ISB, developed the new format by taking the best aspects of each of the precursors to form a single, less confusing, format.
FAIRsharing.26ffrf	APA Neuro Cluster	APANEUROCLUSTER	APA Neuropsychology and Neurology Cluster
FAIRsharing.26pqv5	MitoZoa	MitoZoa	MitoZoa is a specialized database collecting complete and nearly-complete (longer than 7 kb) mtDNA entries of metazoan species, excluding Placozoa. MitoZoa contains curated entries, whose gene annotation has been significantly improved using a semi-automatic reannotation pipeline and by manual curation of mitogenomics experts. MitoZoa has been specifically designed to address comparative analyses of mitochondrial genomic features in a given metazoan group or in species belonging to the same genus (congeneric species). MitoZoa focuses on mitochondrial gene order, non-coding regions, gene content, and gene sequences.
FAIRsharing.2787qk	Ciona intestinalis Anatomy and Development Ontology	CIINTEADO	The first ontology describing the anatomy and the development of Ciona intestinalis, based on the Hotta developmental table.
FAIRsharing.27tnee	Open Modeling EXchange format	OMEX	Open Modeling EXchange format (OMEX), together with the use of other standard formats from the Computational Modeling in Biology Network (COMBINE), is the basis of the COMBINE Archive, a single file that supports the exchange of all the information necessary for a modeling and simulation experiment in biology. An OMEX file is a ZIP container that includes a manifest file, listing the content of the archive, an optional metadata file adding information about the archive and its content, and the files describing the model.
FAIRsharing.27w8k0	The Unified Code for Units of Measure	UCUM	The Unified Code for Units of Measure is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business. The purpose is to facilitate unambiguous electronic communication of quantities together with their units. The focus is on electronic communication, as opposed to communication between humans. A typical application of The Unified Code for Units of Measure are electronic data interchange (EDI) protocols, but there is nothing that prevents it from being used in other types of machine communication.
FAIRsharing.284kre	The DNA Replication Origin Database	OriDB	This database summarizes our knowledge of replication origins in the budding yeast Saccharomyces cerevisiae. Each proposed origin site has been assigned a Status (Confirmed, Likely, or Dubious) expressing the confidence that the site genuinely corresponds to an origin.
FAIRsharing.286amb	MycoBrowser leprae	None	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.
FAIRsharing.28yec8	Minimum Information About a Bioinformatics investigation	MIABi	The Minimum Information about a Bioinformatics investigation (MIABi) initiative specifies, through a series of documentation modules, the minimum information that should be provided for a bioinformatics investigation. The MIABi initiative arises from a response to the growing need for transparency, provenance and scientific reproducibility amongst the bioinformatics and computational biology community.
FAIRsharing.294d6	Graph Markup Language	graphML	GraphML is a comprehensive and easy-to-use file format for graphs. It consists of a language core to describe the structural properties of a graph and a flexible extension mechanism to add application-specific data.
FAIRsharing.29EHM2	database of Disease-Gene Associations with annotated Relationships	eDGAR	The database of Disease-Gene Associations with annotated Relationships (eDGAR) is a database for collecting and organizing the data on gene/disease associations as derived from OMIM, Humsavar and ClinVar. For each heterogeneous or polygenic disease, eDGAR provides information on the relationship among the proteins encoded by the involved genes, including transcription factors and protein-protein interactions.
FAIRsharing.29jzvb	PSIbase	PSIbase	PSIbase is a molecular interaction database based on PSIMAP (PDB, SCOP) that focuses on structural interaction of proteins and their domains. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
FAIRsharing.29qx34	BloodExpress	BloodExpress	BloodExpress is a database of gene expression in mouse haematopoiesis has 271 individual microarray experiments derived from 15 distinct studies done on most characterised mouse blood cell types. Gene expression information has been discretised to absent/present/unknown calls.
FAIRsharing.29zsb8	SNPedia	SNPedia	SNPedia is a wiki resource of the functional consequences of human genetic variation as published in peer-reviewed studies. Entries are formatted to allow associations to be assigned to single genotypes as well as sets of genotypes (genosets). Curation occurs through editorial, community/user, and semi-automated processes.
FAIRsharing.2b3at8	Marine Microbial Biodiversity, Bioinformatics, Biotechnology Checklist	Micro B3	The Micro B3 checklist is a multi-disciplinary standard developed by the Micro B3 Consortium for description of marine microbial sampling. Content of the standard is grouped into six categories covering various aspects of marine microbial sampling. These categories are environment, measurement, sampling, event, sample and organism. Full adoption of the standard allows generation of data records, which are MIxS compliant but also compliant to minimal reporting requirements of the oceanographic and marine biodiversity community, i.e. respectively the Common Data Index (CDI) and the OBIS schema, advancing the metadata interoperability across research domains. Nucleotide sequences of marine microbial samples described according to the Micro B3 checklist can be placed into a very rich environmental context. This checklist had originally been called the M2B3 checklist
FAIRsharing.2by003	Human Gene and Protein Database	HGPD	Human Gene and Protein Database (HGPD) presents SDS-PAGE patterns and other informations of human genes and proteins.
FAIRsharing.2c45na	PROkariotIC Database Of Gene-Regulation	PRODORIC	PRODORIC is a comprehensive database about gene regulation and gene expression in prokaryotes. It includes a manually curated and unique collection of transcription factor binding sites.
FAIRsharing.2cfr4z	Allele Frequency Net Database	AFND	The Allele Frequency Net Database (AFND) provides the scientific community with a freely available repository for the storage of frequency data (alleles, genes, haplotypes and genotypes) related to human leukocyte antigens (HLA), killer-cell immunoglobulin-like receptors (KIR), major histocompatibility complex Class I chain related genes (MIC) and a number of cytokine gene polymorphisms in worldwide populations.
FAIRsharing.2chxxc	NMR Self-defining Text Archive and Retrieval format	NMR-STAR	NMR-STAR is an extension of the STAR file format to store the results of biological NMR experiments.
FAIRsharing.2cw3HU	BonaRes Repository	BonaRes DB	The BonaRes Repository stores soil and agricultural research data from research projects and long-term field experiments which contribute significantly to the analysis of changes of soil and soil functions over the long term. Research data are described by the metadata following the BonaRes Metadata Schema (DOI: 10.20387/bonares-5pgg-8yrp) which combines international recognized standards for the description of geospatial data and research data. Metadata includes AGROVOC keywords.
FAIRsharing.2cyh1h	NCBI Cancer Chromosome Database	Cancer Chromosomes	Three databases, the NCI/NCBI SKY/M-FISH & CGH Database, the NCI Mitelman Database of Chromosome Aberrations in Cancer, and the NCI Recurrent Aberrations in Cancer , are now integrated into NCBI's Entrez system as Cancer Chromosomes.
FAIRsharing.2dam97	Institut Laue-Langevin Data Portal	ILL Data Portal	The Institut Laue-Langevin (ILL) Data Portal is a repository for storage and access to experimental data obtained at the ILL. While individual DOIs for data are accessible, full access to the database, including searching and browsing, requires a login.
FAIRsharing.2dUpZs	FAIR Maturity Indicator Gen2-MI-F2A	None	The FAIR Maturity Indicator Gen2-MI-F2A measures whether the metadata of the record contains "structured" elements. These may be in the form of hash-like content (micrograph, JSON), or in one of the various forms of linked data (JSON-LD, RDFa, etc.).
FAIRsharing.2emr6t	American Physiological Society - Physiological Reviews - Data Repository Standards, Data Supplements	APS - PR Policy	Work published in the APS Journals must necessarily be independently verifiable. Authors describing results derived from unique materials, for example: antibodies, recombinant plasmids and cloned DNAs, and mutant cell lines or viruses, are expected to make such materials available to qualified investigators on request. In addition, authors are encouraged to make data that underlie the conclusions reported in the article freely available via public repositories or available to readers upon request.
FAIRsharing.2etax0	INOH Molecule Role	IMR	A structured controlled vocabulary of concrete protein names and generic (abstract) protein names. This ontology is a INOH pathway annotation ontology, one of a set of ontologies intended to be used in pathway data annotation to ease data integration. IMR is part of the BioPAX working group.
FAIRsharing.2fbnkr	Minimum Information About Particle Tracking Experiments	MIAPTE	The proposed Minimum Information About Particle Tracking Experiments (MIAPTE) reporting guidelines described here aims to deliver a set of rules representing the minimal information required to report and support interpretation and assessment of data arising from intracellular multiple particle tracking (MPT) experiments. Examples of such experiments are those tracking viral particles as they move from the site of entry to the site of replication within an infected cell, or those following vesicular dynamics during secretion, endocytosis, or exocytosis. By promoting development of community standards, MIAPTE will contribute to making MPT data FAIR (Findable Accessible Interoperable and Reusable). Ultimately, the goal of MIAPTE is to promote and maximize data access, discovery, preservation, re-use, and re-purposing through efficient annotation, and ultimately to enable reproducibility of particle tracking experiments.                                                                                                         The MIAPTE guidelines are intended for different categories of users: 1) Scientists with the desire to make new results available in a way that can be interpreted unequivocally by both humans and machines. For this class of users, MIAPTE provides data descriptors to define data entry terms and the analysis workflow in a unified manner. 2) Scientists wishing to evaluate, replicate and re-analyze results published by others. For this class of users MIAPTE provides descriptors that define the analysis procedures in a manner that facilitates its reproduction. 3) Developers who want to take advantage of the schema of MIAPTE to produce MIAPTE compatible tools. MIAPTE consists of a list of controlled vocabulary (CV) terms that describe elements and properties for the minimal description of particle tracking experiments, with a focus on viral and vesicular traffic within cells. As part of this submission we provide entity relationship (ER) diagrams that show the relationship between terms. Finally, we also provide documents containing the MIAPTE-compliant XML schema describing the data model used by Open Microscopy Environment inteGrated Analysis (OMEGA), our novel particle tracking data analysis and management tool, which is reported in a separate manuscript.                                                                  MIAPTE is structured in two sub-sections: 1) Section 1 contains elements, attributes and data structures describing the results of particle tracking, namely: particles, links, segments and trajectories. 2) Section 2 contains details about the algorithmic procedure utilized to produce and analyze trajectories as well as the results of trajectory analysis. In addition MIAPTE includes those OME-XML elements that are required to capture the acquisition parameters and the structure of images to be subjected to particle tracking The current version of the model, MIAPTE v02, is intended to be a Request for Comments (Crocker and Postel, 2008). Members of the scientific and developer communities are invited to collaborate with us to modify, extend, and improve the model.
FAIRsharing.2fnz2n	GlycoRDF	GLYCORDF	GlycoRDF is a standard representation for storing Glycomcis data (glycan structures, publication information, biological source information, experimental data) in RDF. The RDF language is defined by an OWL ontology and documented in the ontology and generated WORD files. Its GitHub repository also contains source code for the generation of RDF data for glycomics databases.
FAIRsharing.2Fwl0E	BovineMine	BovineMine	BovineMine integrates the bovine reference genome assembly with many other biological data sets, including genomes of other species. The sheep and goat genomes allow comparison across ruminants. Model organism data (human, mouse, rat) allow well-curated data sets to be applied to ruminants using orthology.
FAIRsharing.2g4cfa	Quantitative Trait Loci Archive	QTL Archive	This site provides access to raw data from various QTL (quantitative trait loci) studies using rodent inbred line crosses. Data are available in the .csv format used by R/qtl and pseudomarker programs. In some cases analysis scripts and/or results are posted to accompany the data.
FAIRsharing.2g5kcb	Research Data Australia	RDA	Research Data Australia is the data discovery service of the Australian Research Data Commons (ARDC). Research Data Australia helps you find, access, and reuse data for research from over one hundred Australian research organisations, government agencies, and cultural institutions. This services indexes metadata about the data stored by their data publishing partners, providing links out to the primary data.
FAIRsharing.2ghc8s	NSF Data Sharing Policy and Data Management Plan Requirements	None	Investigators are expected to share with other researchers, at no more than incremental cost and within a reasonable time, the primary data, samples, physical collections and other supporting materials created or gathered in the course of work under NSF grants. Grantees are expected to encourage and facilitate such sharing.
FAIRsharing.2GMztk	ORTHOlogous MAmmalian Markers	OrthoMaM	ORTHOlogous MAmmalian Markers database (OrthoMaM) describes the evolutionary dynamics of orthologous genes in mammalian genomes using a phylogenetic framework.
FAIRsharing.2h33ax	International Classification of Primary Care, 2nd Edition	ICPC-2	The International Classification of Primary Care, 2nd Edition (ICPC-2) classifies patient data and clinical activity in the domains of General/Family Practice and primary care, taking into account the frequency distribution of problems seen in these domains. It allows classification of the patient’s reason for encounter (RFE), the problems/diagnosis managed, interventions, and the ordering of these data in an episode of care structure.
FAIRsharing.2h8cxh	autoSNPdb	autoSNPdb	Implemented the SNP discovery software autoSNP within a relational database to enable the efficient mining of the identified polymorphisms and the detailed interrogation of the data. AutoSNP was selected because it does not require sequence trace files and is thus applicable to a broader range of species and datasets.
FAIRsharing.2hh7g7	Genomic Contextual Data Markup Language	GCDML	The Genomic Contextual Data Markup Language (GCDML) is a core project of the Genomic Standards Consortium (GSC) that is a reference implementation the Minimum Information about a Genome Sequence (MIGS/MIMS/MIMARKS), and the extensions the Minimum Information about a Metagenome Sequence (MIMS) and Minimum Information about a MARKer gene Sequence (MIMARKS).
FAIRsharing.2hqa97	OmicsDI XML format	None	XML Schema definition for the OmicsDI XML format.
FAIRsharing.2hzttx	Breast Cancer Grading Ontology	BCGO	Breast Cancer Grading Ontology assigns a grade to a tumor starting from the 3 criteria of the NGS.
FAIRsharing.2KIa7T	Integrated Microbial Genomes and Microbiomes - Viral Resources	IMG/VR	Since 2016, the IMG/VR database has provided access to the largest collection of viral sequences obtained from (meta)genomes. The 3rd version of IMG/VR (Sept 2020) is composed of 18,373 cultivated and 2,314,329 uncultivated viral genomes (UViGs), nearly tripling the total number of sequences compared to the previous version. UViGs in IMG/VR are reported as single viral contigs, integrated proviruses, or genome bins, and are annotated with a new standardized pipeline including genome quality estimation using CheckV, taxonomic classification reflecting the latest ICTV update, and expanded host taxonomy prediction. The new IMG/VR interface enables users to efficiently browse, search, and select UViGs based on genome features and/or sequence similarity.
FAIRsharing.2kq1fs	CONsolidated Standards of Reporting Trials - Unofficial Extensions	CONSORT - UE	The main CONSORT Statement is based on the "standard" two-group parallel design. There are several variations to the standard trial methodology, including different design aspects (e.g., cluster), interventions (e.g., herbals) and data (e.g., harms). However, this record describes those modifications to the CONSORT guidelines that are NOT developed with the involvement of the CONSORT Group do not have permission to name their work "CONSORT". The unofficial extensions described here have modified the CONSORT Statement without the involvement of the Group.
FAIRsharing.2LyTxE	Polygenic Risk Score Reporting Standards	PRS-RS	The Polygenic Risk Score Reporting Standards (PRS-RS) provides the minimal information expected of authors to promote the internal validity, transparency, and reproducibility of PRS by requiring authors to detail the study population, statistical methods, and clinical utility of a published score. PRSs, which often aggregate results from genome-wide association studies, can bridge the gap between initial discovery efforts and clinical applications for the estimation of disease risk using genetics. However, there is notable heterogeneity in the application and reporting of these risk scores, which hinders the translation of PRSs into clinical care. These guidelines update the Genetic Risk Prediction Studies (GRIPS) Statement to reflect the present state of the field. Drawing on the input of experts in epidemiology, statistics, disease-specific applications, implementation and policy, this reporting framework defines the minimal information that is needed to interpret and evaluate PRSs, especially with respect to downstream clinical applications. Items span detailed descriptions of study populations, statistical methods for the development and validation of PRSs and considerations for the potential limitations of these scores. In addition, data deposition is encouraged via the PGS Catalog to facilitate reproducibility and comparative benchmarking. By providing these criteria in a structured format that builds on existing standards and ontologies, the aim is to facilitate translation into clinical care and progress towards defining best practice.
FAIRsharing.2m4ms9	Protein MODification	PSI-MOD	PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified.
FAIRsharing.2ndf9r	PLOS Thesaurus	PLOSTHES	The PLOS Thesaurus includes over 10,000 Subject Area terms covering the wide range of research topics included the PLOS journals. The terms are applied programmatically to publications to aid record search and discovery.
FAIRsharing.2nrf9f	Wiggle Track Format	WIG	The wiggle (WIG) format is an older format for display of dense, continuous data such as GC percent, probability scores, and transcriptome data. The bigWig format is the recommended format for almost all graphing track needs. For speed and efficiency, wiggle data is compressed and stored internally in 128 unique bins. This compression means that there is a minor loss of precision when data is exported from a wiggle track (i.e., with output format "data points" or "bed format" within the Table Browser). The bedGraph format should be used if it is important to retain exact data when exporting.
FAIRsharing.2okP6D	Finnish Social Science Data Archive	FSD	The Finnish Social Science Data Archive (FSD) is a national-level service resource for research and teaching in Finland. FSD promotes data sharing and curates and disseminates digital research data for research, teaching and studying purposes. FSD serves both Finnish and international users. FSD is an expert in the curation and preservation of digital research data collected to study society, people and culture. FSD focuses on acquiring Social Science data, but data from other relevant fields (Arts and Humanities, Education, and Health Science) is also archived. FSD is Finland's service provider for CESSDA ERIC, the Consortium of European Social Science Data Archives.
FAIRsharing.2p1gn5	TargetTrack	TargetTrack	TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structure determination.
FAIRsharing.2QpmkQ	Prehistory and Protohistory Vocabulary	None	Controlled vocabulary used for indexing bibliographical records for the "Prehistory and Protohistory" FRANCIS database (1972-2015). It consists of 3093 entries mainly in 2 languages (English and French) grouped under 107 collections
FAIRsharing.2Rk97G	IDG Peptide Resource Reporting Standards	None	Peptide probe reporting standards for the Illuminating the Druggable Genome (IDG) consortium.
FAIRsharing.2rm2b3	W3C Provenance Ontology	PROV-O	The PROV Ontology (PROV-O) expresses the PROV Data Model using the OWL2 Web Ontology Language (OWL2). It is intended for the Linked Data and Semantic Web community. It provides a set of classes, properties, and restrictions that can be used to represent and interchange provenance information generated in different systems and under different contexts. It can also be specialized to create new classes and properties to model provenance information for different applications and domains. PROV-O is one serialization of PROV-DM, the other two being PROV-N and PROV-XML. PROV-DM and PROV-O define how to represent provenance on the World Wide Web, and as such additional documentation has been included in this record for PROV-AQ (Access and Query), a note which describes how standard web protocols may be used to locate, retrieve and query provenance records. PROV-DC provides a mapping from Dublin Core to PROV-O, and is listed in this record. For the purpose of this specification, provenance is defined as a record that describes the people, institutions, entities, and activities involved in producing, influencing, or delivering a piece of data or a thing. In particular, the provenance of information is crucial in deciding whether information is to be trusted, how it should be integrated with other diverse information sources, and how to give credit to its originators when reusing it. In an open and inclusive environment such as the Web, where users find information that is often contradictory or questionable, provenance can help those users to make trust judgements.
FAIRsharing.2rzyrx	Dispedia Core Ontology	DCO	Dispedia Core Ontology is a schema for information brokering and knowledge management in the complex field of rare diseases. On the one hand, the Dispedia schema uses semantic technologies to describe patients affected by rare diseases, and on the other hand, to record expertise concerning these particular diseases in machine-processable form. In addition to the differentiated attribution of facts to the individual need for information, Dispedia enables information brokering which adjusts to the type of recipient, its character as well as its personal attitude. The schema was initially geared to an exemplified disease, Amyotrophe Lateralsclerose (ALS).
FAIRsharing.2srshy	REFOLDdb	REFOLDdb	REFOLDdb is a resource for the optimization of protein refolding, referring to published methods employed in the refolding of recombinant proteins. It stores a collection of published experimental approaches and records for refolding proteins. It contains data converted from the original REFOLD database that had been created and updated until 2009 by Monash University in Australia, as well as data retrieved from articles on refold technologies published since 2009.
FAIRsharing.2t35ja	RCSB Protein Data Bank	RCSB PDB	This resource is powered by the Protein Data Bank archive-information about the 3D shapes of proteins, nucleic acids, and complex assemblies that helps students and researchers understand all aspects of biomedicine and agriculture, from protein synthesis to health and disease. As a member of the wwPDB, the RCSB PDB curates and annotates PDB data. The RCSB PDB builds upon the data by creating tools and resources for research and education in molecular biology, structural biology, computational biology, and beyond.
FAIRsharing.2tpx4v	Global Alliance for Genomics and Health Metadata Model	GA4GH	The metadata model for GA4GH, an international coalition of both public and private interested parties, formed to enable the sharing of genomic and clinical data.
FAIRsharing.2VADoR	The Data Platform for Plasma Technology	INPTDAT	The interdisciplinary data platform INPTDAT provides easy access to research data and information from all fields of applied plasma physics and plasma medicine. It aims to support the findability, accessibility, interoperability and re-use of data for the low-temperature plasma physics community.
FAIRsharing.2vsmz5	Ocean Biogeographic Information System Schema	OBIS Schema	The OBIS schema is a list of data fields with names, descriptions, and format notes. The Ocean Biogeographic information System (OBIS) seeks to absorb, integrate, and assess isolated datasets into a larger, more comprehensive pictures of life in our oceans. The system hopes to stimulate research about our oceans to generate new hypotheses concerning evolutionary processes, species distributions, and roles of organisms in marine systems on a global scale. The abstract maps that OBIS generates are maps that contribute to the ‘big picture’ of our oceans: a comprehensive, collaborative, world-wide view of our oceans.
FAIRsharing.2wa7v7	PhenX Toolkit	PhenX Toolkit	The PhenX (consensus measures for Phenotypes and eXposures) Toolkit is a web-based catalog of recommended, standard measures of phenotypes and environmental exposures for use in biomedical research. The PhenX Toolkit offers well-established, broadly validated measures of phenotypes and exposures relevant to investigators in human genomics, epidemiology, and biomedical research. The measures in the Toolkit are selected by Working Groups of domain experts using a consensus process. The Toolkit provides detailed protocols, information about the measures, and tools to help investigators incorporate PhenX measures into their studies.
FAIRsharing.2wb6fv	The ribosomal RNA operon copy number database	rrnDB	The ribosomal RNA operon copy number database is a publicly available, curated resource for ribosomal operon (rrn) copy number information for Bacteria and Archaea.
FAIRsharing.2xahkx	Neuroscience Information Framework Dysfunction	NIFDYS	This ontology contains the former BIRNLex-Disease, version 1.3.2. -- The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. It is built using the organizational framework provided by the foundational Basic Formal Ontology (BFO). It uses an abstract biomedical layer on top of that - OBO-UBO which has been constructed as a proposal to the OBO Foundry. This is meant to support creating a sharable view of core biomedical objects such as biomaterial_entity, and organismal_entity that all biomedical ontologies are likely to need and want to use with the same intended meaning. The BIRNLex was intended to serve as the basis for construction of a formal ontology for the multiscale investigation of neurological disease.
FAIRsharing.2y6rkq	Advanced Ecological Knowledge and Observation System	TERN AEKOS	The Advanced Ecological Knowledge and Observation System from the Terrestrial Ecosystem Research Network (TERN AEKOS) focuses on ecological plot data that are generated by land-based ecosystem projects that use survey, monitoring and experimental studies to collect raw data on plants, animals (including traits) and their immediate environments at the same location. Plot data are observations sampled by using scientific techniques such as quadrants, grids, transects, animal trap arrays and other structured sampling techniques.
FAIRsharing.2yv5sa	Clustered Data Table Format	None	This is a data table format used in the PUMAdb workflow to transform a .pcl file into a .cdt (clustered data table) file which contains the original data, but reordered, to reflect the clustering.
FAIRsharing.2z0e8b	ExoCarta	ExoCarta	A database of exosomes, membrane vesicles of endocytic origin released by diverse cell types.
FAIRsharing.2ZShyL	Ethnology vocabulary	None	The Ethnology vocabulary is a controlled vocabulary used for indexing the bibliographical records for the now-archived "Ethnology" FRANCIS database (1972 - 2015, http://pascal-francis.inist.fr/). This resource contains over 9000 classes, with each class available in English and French.
FAIRsharing.300fqe	LINCS Extended Metadata Standard: Embryonic Stem Cells	LINCS 2: Embryonic Stem Cells	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project. Metadata for this standard includes organism name, genetic modifications and precursor cell name.
FAIRsharing.30fk89	Core Scientific MetaData model	CSMD	Capturing high level information about scientific studies and the data that they produce, the CSMD is developed to support data collected within a facility’s scientific workflow. However the model is also designed to be generic across scientific disciplines and has application beyond facilities science, particularly in the “structural sciences” (such as chemistry, material science, earth science, and biochemistry) which are concerned with analysing the structure of substances, and perform systematic experimental analyses on samples of those materials.
FAIRsharing.30vmv9	BioSignalML Ontology	None	An ontology for working with biosignals. This ontology defines concepts to describe the storage and exchange of biosignals, regardless of their underlying data format, and provides terms for common biosignal metadata.
FAIRsharing.31hec1	Minimal information about Adaptive Immune Receptor Repertoire	MiAIRR	Minimal information about Adaptive Immune Receptor Repertoire (MiAIRR) is a checklist of minimally required information that we recommend journals adopt, and that could form the requirements for submission to a public data repository. AIRR sequencing studies apply high-throughput sequencing technologies to profile B cell receptors (BCRs) and T cell receptors (TCRs). The standards were developed by the AIRR Community (http://airr-community.org) Minimal Standards Working Group.
FAIRsharing.31venv	DebugIT Core Ontology	DCO-DEBUGIT	The Debugit Core Ontology (dco) covers the complete conceptual space of the domain of interest in the DebugIT project. It focuses on the management of antibiotics resistance within hospitals and infectious diseases to cover the clinical monitoring use cases. The ontology shall provide a semantic reference as logically defined classes in a formal and computer understandable format. It is supposed to formally represent all basic kinds of entities in the domain of interest, together with their invariant and context-independent properties. The ontology is therefore distinct from the representation of clinical knowledge as targeted by the DebugIT WP 4. Instead, it has a supportive semantic glue Function as it provides standardized and formally described meaning identifiers across the whole project, hence serving the Interoperability platform as well.
FAIRsharing.327nbg	Kyoto Encyclopedia of Genes and Genomes	KEGG	KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.
FAIRsharing.32b10v	Minimum Information About a Microarray Experiment	MIAME	MIAME is intended to specify all the information necessary for an unambiguous interpretation of a microarray experiment, and potentially to reproduce it. MIAME defines the content but not the format for this information.
FAIRsharing.32hxxa	IPD-MHC - Major Histocompatibility Complex Database	IPD-MHC	The IPD-MHC Database provides a centralised repository for sequences of the Major Histocompatibility Complex (MHC) from a number of different species. Through a number of international collaborations IPD is able to provide the MHC sequences of different species. The sequences provided by each group are curated by experts in the field and then submitted to the central database.
FAIRsharing.32zwmn	reactive oxygen species-mediated signaling pathway database	ROSPath	ROSPath was developed for the purpose of aiding the research of ROS-mediated signaling pathways including growth factor-, stress- and cytokine-induced signaling that are main research interests of the Division of Molecular Life Sciences and Center for Cell Signaling Research in Ewha Womans University. This record is labelled as uncertain as the homepage for this resource appears to be offline.
FAIRsharing.338ze0	Astronomy Visualization Metadata	AVM	The primary focus of the AVM standard is on print-ready and screen ready astronomical imagery, which has been rendered from telescopic observations (also known as “pretty pictures”). Such images can combine data acquired at different wavebands and from different observatories. While the primary intent is to cover data-derived astronomical images, there are broader uses as well. Specifically, the most general subset of this schema is also appropriate for describing artwork and illustrations of astronomical subject matter.
FAIRsharing.33mxgr	MyOntoServiceFull_FallDetection	FALL	This resource is no longer available because its underlying source material is not suitable for FAIRsharing. 
FAIRsharing.34pfmc	CentrosomeDB	CentrosomeDB	CentrosomeDB is a collection of human and drosophila centrosomal genes that were reported in the literature and other sources. The database offers the possibility to study the evolution, function, and structure of the centrosome. They have compiled information from many sources, including Gene Ontology, disease-association, single nucleotide polymorphisms, and associated gene expression experiments.
FAIRsharing.3571n8	Agency for Healthcare Research and Quality Public Access to Federally Funded Research	AHRQ Policy	This document is the Agency for Healthcare Research and Quality's (AHRQ's) policy for public access to scientific publications and scientific data in digital format resulting from AHRQ funding.
FAIRsharing.3703x3	African Academy of Sciences Open Research Data Guidelines for Authors	AAS Policy	This is a non-exhaustive list of databases, standards, and policies that have been approved for an AAS Open Research article.
FAIRsharing.37nbtc	International HLA and Immunogenetics Workshop XML	IHIW XML	International HLA and Immunogenetics Workshop XML (IHIW XML) is intended as a potentially general-purpose XML format for exchanging HLA genotyping data (HLA genotypes and associated consensus sequences) and associated meta-data generated using Next Generation Sequencing (NGS) methods. This format supports NGS based genotyping methods, phased and unphased consensus sequence data, registered methodologies, reference allele data, complete reporting of allele and genotype ambiguity and MIRING compliant reporting.
FAIRsharing.384x47	International transfer format for botanic garden plant records	ITF2	The International Transfer Format for Botanic Garden Plant Records, version 2 (ITF2) was developed in response to requests from Botanic Gardens to incorporate additional data fields for transfer within the Botanic Gardens and allow for a more flexible transfer format than the original transfer format outlined in ITF version 01.00. It is biased towards 'Conservation Type Data Fields', but incorporates a procedure allowing for additional data fields to be identified and exchanged between gardens. It is because of this flexibility that it is believed that the ITF2 will remain relevant to Botanic Gardens for a long time despite the rapid change in information system technology in recent years.
FAIRsharing.38ph3j	OntoPsychia, social module	ONTOPSYCHIA	Ontology of social and environmental determinants for psychiatry
FAIRsharing.391trx	Plant Genome Network	PGN	PGN is a repository for plant EST sequence data located at Cornell. It comprises an analysis pipeline and a website, and presently contains mainly data from the Floral Genome Project.
FAIRsharing.3929xa	Computer Cluster	APACOMPUTER	APA Computer Cluster
FAIRsharing.39ff0a	Resource Description and Access Vocabularies	RDA Vocabularies	Resource Description and Access Vocabularies (RDA) Vocabularies is a representation of the RDA entities, elements, relationship designators, and controlled terms in RDF (Resource Description Framework). RDA is a standard for descriptive cataloging of bibliographic data. It is intended for use by libraries and other cultural organizations such as museums and archives. The Vocabularies are intended to support linked data applications using RDA.
FAIRsharing.3aabq1	NASA Global Change Master Directory / CEOS International Directory Network	GCMD/IDN	The CEOS International Directory Network (IDN), working through NASA's Global Change Master Directory (GCMD), holds more than 32,000 Earth science data set descriptions, which cover subject areas within the Earth and environmental sciences. The project mission is to assist researchers, policy makers, and the public in the discovery of and access to data, related services, and ancillary information (which includes descriptions of instruments and platforms) relevant to global change and Earth science research. The GCMD/IDN is an international effort developed to assist researchers in locating information on available data sets. The directory provides free, online access to information for scientific data worldwide in the Earth sciences: geoscience, hydrosphere, biosphere, satellite remote sensing, and atmospheric sciences. Sometimes referred to as the CEOS IDN Master Directory, it describes data held by university departments, government agencies, international government agencies, and associated organizations. Both GCMD and IDN are used to refer to this repository in help pages and other websites, and therefore both are represented here.
FAIRsharing.3attbv	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors	None	The Information for Authors policy document provides details of manuscript submission to the Journal of Clinical Investigation. With regards to data deposition, the policy statest that large datasets for gene expression microarrays, SNP arrays, and high-throughput sequencing studies must be deposited in a public repository. Microarray data must be deposited in a MIAME-compliant public database. High-throughput sequencing data must be deposited in a MINSEQE-compliant public database. Provide the relevant accession numbers in the text of the main manuscript. Deposition of other types of large datasets in a public repository is strongly encouraged. Other supporting datasets must be made available to any interested reader on the publication date from the authors directly.
FAIRsharing.3axym7	Germplasm Resources Information Network	GRIN	GRIN provides National Genetic Resources Program (NGRP) personnel and germplasm users continuous access to databases for the maintenance of passport, characterization, evaluation, inventory, and distribution data important for the effective management and utilization of national germplasm collections.
FAIRsharing.3CCrPF	PyNN	PyNN	The PyNN API aims to support modelling at a high-level of abstraction (populations of neurons, layers, columns and the connections between them) while still allowing access to the details of individual neurons and synapses when required. PyNN provides a library of standard neuron, synapse and synaptic plasticity models, which have been verified to work the same on the different supported simulators. PyNN also provides a set of commonly-used connectivity algorithms (e.g. all-to-all, random, distance-dependent, small-world) but makes it easy to provide your own connectivity in a simulator-independent way, either using the Connection Set Algebra or by writing your own Python code. PyNN has been developed as a procedural description in Python which can be used to instantiate a network across multiple simulators.
FAIRsharing.3cswbc	MiCroKiTS	MiCroKiTS	This resource is a collection of all proteins identified to be localized on kinetochore, centrosome, midbody, telomere and spindle from two fungi (S. cerevisiae and S. pombe) and five animals, including C. elegans, D. melanogaster, X. laevis, M. musculus and H. sapiens based on the rationale of "Seeing is believing" (Bloom K et al., 2005). Through ortholog searches, the proteins potentially localized at these sub-cellular regions were detected in 144 eukaryotes. Then the integrated and searchable database MiCroKiTS - Midbody, Centrosome, Kinetochore, Telomere and Spindle has been established. Currently, the MiCroKiTS 4.0 database was updated on Sep. 6, 2014, containing 87,983 unique protein entries.
FAIRsharing.3dm6gm	Edinburgh Human Developmental Anatomy	EHDA	A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy (EMAP ontology) and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once. The EHDA; Hunter et al. 2003 is less complete than later versions: it comprises a set of ontologies, one for each Carnegie stage (CS) (1–20) that only includes basic part_of data. Its structure was derived from the original EMAP ontology, and its content was based partly on this and partly on a limited study of sectioned human material.
FAIRsharing.3epmpp	Mendeley Data	Mendeley Data	Mendeley Data is a multidisciplinary, free-to-use open repository specialized for research data. Data files of up to 10GB can be uploaded and shared. Search more than 20+ million datasets indexed from 1000s of data repositories and collect and share datasets with the research community following the FAIR data principles. Links are available to related authors, software, grants and research. Each version of a dataset is given a unique DOI, and dark archived with DANS (Data Archiving and Networking Services), ensuring that every dataset and citation will be valid in perpetuity. Metadata is licensed CC0, and datasets are and will continue to be free access. Mendeley Data will shortly support managed access, and currently supports embargoing of data both generally and while undergoing peer review. It is funded by a subscription model for Academic & Government entities.
FAIRsharing.3erhxm	Endocrine Society - Endocrine Reviews - Information for Authors	None	Endocrine Reviews is a bimonthly publication on scientific and clinical research in Endocrinology as well as related areas of life science. This document provides information and guidiance to authors on the specifications required for manuscript preparation and submission to the journal.
FAIRsharing.3f9n4y	Open Targets	Open Targets	Open Targets is a data integration platform for access to and visualisation of potential drug targets associated with disease. Each drug target is linked to a disease using integrated genome-wide data from a broad range of data sources.
FAIRsharing.3fc9zf	openEHR Health Record Specification	openEHR	openEHR is an open standard that uses a novel two-level modelling methodology to represent health information and meta-data by preserving the semantics during when it were created. It enables semantic interoperability and makes it possible to link disparate data sources easily and safely. It also allows for terminology binding which provides the bridge between the 'terminology' and 'information model' this making it much more useful than using these standards separately. Although openEHR is a de-facto standard that is developed by volunteers openly, ISO and CEN adopted it (ISO/EN 13606) so it is a full international standard. It has relationship and mappings between other standards, such as HL7.
FAIRsharing.3ftws4	Ontology of Geographical Region	OGR	This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS. It must be used with other two ontologies, in the case of diabetes: the Ontology of Glucose Metabolism Disorder (OGMD) and the Ontology for Genetic Disease Investigations (OGDI). Together, these three ontologies form the Ontology for Genetic Susceptibility Factor (OGSF), which is the project where information about this ontology is stored.
FAIRsharing.3fyavr	Bioinformatics Web Service Ontology	OBIws	The Bioinformatics Web Services ontology (OBIws) is an ontology that extends the Ontology for Biomedical Investigations (OBI) to build an ontology that supports consistent annotation of bioinformatics Web services. We follow a systematic methodology for enriching OBI with terms to support Web service annotation. This process involves the design of ontology analysis diagrams for Web services and their subsequent analysis to discover terms that need to be added to the ontology. Current OBIws ontology is focusing on sequence analysis web services. With developed patterns of modeling web services, OBIws can be extended easily to support annotations of different kind web services.
FAIRsharing.3gxr9b	Simple Omnibus Format in Text	SOFT	Using Simple Omnibus Format in Text (SOFT), researchers can readily upload and download data. The resource is text-based so can be compatible with simple spreadsheets and data applications. A SOFT file can simultaneously contain both tabulated data as well as descriptive information for a chain of related Platforms, Samples, and/or Series records.
FAIRsharing.3hrbfr	Automatic molecular interaction predictions	InteroPorc	InteroPorc is an automatic prediction tool to infer protein-protein interaction networks. It is applicable for lots of species using orthology and known interactions. The interoPORC method is based on the interolog concept and combines source interaction datasets from public databases as well as clusters of orthologous proteins (PORC) available on Integr8.
FAIRsharing.3jp2e5	Prokaryotic Glycoproteins Database	ProGlycProt	ProGlycProt (Prokaryotic Glycoproteins) is a manually curated, comprehensive repository of experimentally characterized eubacterial and archaeal glycoproteins, generated from an exhaustive literature search. This is the focused beginning of an effort to provide concise relevant information derived from rapidly expanding literature on prokaryotic glycoproteins, their glycosylating enzyme(s), glycosylation linked genes, and genomic context thereof, in a cross-referenced manner.
FAIRsharing.3kfn3j	Allen Brain Atlas Adult Mouse Brain Ontology	ABA-AMB	The Adult Mouse Brain ontology is used within the Allen Brain Map Project to describe and annotate data from the project.
FAIRsharing.3mayy	Cell Press - Current Biology - Information for Authors	None	Current Biology is a general journal that publishes original research across all areas of biology together with an extensive and varied set of editorial sections. A primary aim of the journal is to foster communication across fields of biology, both by publishing important findings of general interest from diverse fields and through highly accessible editorial articles that explicitly aim to inform non-specialists. Current Biology is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Current Biology. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.3mdt9n	Chemical Markup Language	CML	CML (Chemical Markup Language) is an XML language designed to hold most of the central concepts in chemistry. It was the first language to be developed and plays the same role for chemistry as MathML for mathematics and GML for geographical systems. CML covers most mainstream chemistry and especially molecules, reactions, solid-state, computation and spectroscopy as well as a wide range of chemical properties, parameters and experimental observation. It is particularly concerned with the communication between machines and humans, and machines to machines.
FAIRsharing.3mprr8	XML for evolutionary biology and comparative genomics.	phyloXML	PhyloXML is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events.
FAIRsharing.3mtaee	Open Archives Initiative Object Reuse and Exchange	OAI-ORE	Open Archives Initiative develops and promotes interoperability standards that aim to facilitate the efficient dissemination of content; OAI has its roots in the open access and institutional repository movements. The OAI-ORE is a standard for the description and exchange of compound digital objects (e.g. distributed resources with multiple media types including text, images, data, and video), to expose the rich content in these aggregations to applications that support authoring, deposit, exchange, visualization, reuse, and preservation. The intent of the effort is to develop standards that generalize across all web-based information including the increasing popular social networks of “web 2.0”.
FAIRsharing.3mzbyb	Human Platelet Antigens	IPD-HPA	The database provides a centralised repository for the data which define the human platelet antigens (HPA). Alloantibodies against human platelet antigens are involved in neonatal alloimmune thrombocytopenia, post-transfusion purpura and refractoriness to random donor platelets.
FAIRsharing.3nm6zq	UNAVCO Data	UNAVCO Data	UNAVCO provides access to data that the community of geodetic scientists can use for quantifying the motions of rock, ice and water that are monitored by a variety of sensor types at or near the Earth's surface. The data types include GPS/GNSS, imaging data such as from SAR and TLS, strain and seismic borehole data, and meteorological data. Most of these can be accessed via web services. In addition, GPS/GNSS datasets, TLS datasets, and InSAR products are assigned digital object identifiers.
FAIRsharing.3nz5cb	Annotation and Image Markup	AIM	The Annotation and Image Markup project provides a standardized schema for capturing the results of medical imaging exams, primarily radiology, using controlled terminologies/ontologies. AIM captures results in terms of the region within an image in which areas of interest are located, the semantic descriptions of those regions, inferences about them, calculations on them, and quantitative features derived by computer programs run on them. AIM is interoperable with DICOM-SR and HL7-CDA, other standards for image metadata, but it provides unique advantages by providing an explicit semantic model of imaging results.
FAIRsharing.3prt32	Bone and Cartilage Tissue Engineering Ontology	BCTEO	Ontology that describes the field of Tissue Engineering for what concerns bone and cartilage tissues.
FAIRsharing.3pt56w	Human Protein-Protein Interaction rEference	HIPPIE	HIPPIE integrates human protein-protein interactions from several manually curated source databases. It provides a web tool to query the interaction data, generate highly reliable, context-specific interaction networks and to make sense out of them.
FAIRsharing.3pxg2f	Axt Alignment Format	None	Axt Alignment files are produced from Blastz, an alignment tool available from Webb Miller's lab at Penn State University. The axtNet and axtChain alignments are produced by processing the alignment files with additional utilities written by Jim Kent at UCSC.
FAIRsharing.3qdg66	Genomic Clinical Decision Support Ontology	GENE-CDS	The Genomic CDS ontology aims to unify several functionalities in a single resource, being: * A knowledge base for clinical pharmacogenomics/pharmacogenetics that can be used for question-answering (e.g., which SNPs are associated with this drug?) * A rule base for clinical decision support (e.g., inferring that a patient with a specific set of SNPs requires a lowered dose of warfarin and generating a CDS message that can be viewed by clinicians) * A tool for checking data consistency (e.g., highlighting which allele definitions in PharmGKB are overlapping, or which clinical decision support rules are matching the same group of patients)
FAIRsharing.3qh2tg	MODOMICS	MODOMICS	MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions (together with their protein cofactors). Also included are the protein sequences, the structure data (if available), selected references from scientific literature, and links to other databases allowing to obtain comprehensive information about individual modified residues and proteins involved in their biosynthesis.
FAIRsharing.3rnawd	Signal Transduction Classification Database	STCDB	The signal molecules and pathways are classified and illustrated by graphs in this database.
FAIRsharing.3rpknp	Nature Publishing Group - Nature Chemical Biology - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.3rv9m8	Ocean Biodiversity Information System	OBIS	The Ocean Biodiversity (formerly Biogeographic) information System (OBIS) seeks to absorb, integrate, and assess isolated datasets into a larger, more comprehensive pictures of life in our oceans. The system hopes to stimulate research about our oceans to generate new hypotheses concerning evolutionary processes, species distributions, and roles of organisms in marine systems on a global scale. The abstract maps that OBIS generates are maps that contribute to the ‘big picture’ of our oceans: a comprehensive, collaborative, world-wide view of our oceans. OBIS provides a portal or gateway to many datasets containing information on where and when marine species have been recorded. The datasets are integrated so you can search them all seamlessly by species name, higher taxonomic level, geographic area, depth, and time; and then map and find environmental data related to the locations.
FAIRsharing.3UMg9d	European Ocean Biodiversity Information System	EurOBIS	The European Ocean Biodiversity Information System – EurOBIS – is an online marine biogeographic database compiling data on all living marine creatures. The principle aims are to centralize the largely scattered biogeographic data on marine species collected by European institutions and to make these data freely available and easily accessible. The data are either collected within European marine waters or by European researchers and institutes outside Europe. The database focuses on taxonomy and occurrence records in space and time; all data can be searched and visualised through a set of online mapping tools.
FAIRsharing.3vf3hp	Eurofut	EUFUT	There is currently no information available on Eurofut.
FAIRsharing.3vfc16	Compilation and Creation of datasets from PDB	ccPDB	ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for structural or functional annotation of proteins. There are numerous datasets from the literature and the Protein Data Bank (PDB), which were used for developing methods to annotate proteins at the sequence (or residue) level. A tool is available for creating a wide range of customized data sets from PDB.
FAIRsharing.3wdd17	Antibody Registry		The Antibody Registry exists to give researchers a way to universally identify antibodies used in publications. The registry lists many commercial antibodies from about 200 vendors which have each been assigned a unique identifier. If the antibody that you are using does not appear in the list, an entry can be made by filling in as little as 2 pieces of information: the catalog number and the url of the vendor where our curators can find information and material data sheets. Many optional fields can also be filled in that will help curators identify the reagent. After submitting an antibody, you are given a permanent identifier that can be used in publications. This identifier even if it is later found to be a duplicate, can be quickly traced back in the antibody registry. We never delete records, but we collapse duplicate entries on a regular basis (the old identifiers are kept to help with search).
FAIRsharing.3wwc0m	Neotoma Paleoecology Database	Neotoma	The mission of the Neotoma Paleoecology Database is to provide a high-quality, community-curated, and sustainable public repository for paleoecological data, spanning the last 2.5 million years, including fossil pollen, mammal, diatom, ostracode, and geochemical data. Neotoma facilitates multi-scale, multi-disciplinary research and education.  It is available for use by other data cooperatives that are welcome to develop their own individualized frontends to the database, as well as remotely input and update data. The Neotoma Paleoecology Database is an international coalition of constituent databases, and provides a common data model and user-oriented services for these constituent databases. Neotoma data are public and made freely available to all.
FAIRsharing.3x8jd5	Radiation Oncology Ontology	ROO	The Radiation Oncology Ontology (ROO) aims to cover the radiation oncology domain with a strong focus on re-using existing ontologies. ROO models terms including: uniform and non-uniform margins; ROI target volumes and organs-at-risk; dose-volume histogram parameters (Dx, Vx, MLD, etc.); and on-line / off-line setup protocols. ROO represents clinical data (and their relationships) in the radiation oncology domain following FAIR principles.
FAIRsharing.3xdroz	PITEC_DATABASE	PITEC	Technological Innovation Panel (PITEC) is a database covering an extensive sample of Spanish firms from the Community Innovation Survey (CIS) for the period 2006 to 2015. The main objective of the Community Innovation Survey in Enterprises is to provide direct information on the innovation process in enterprises, developing indicators that allow to ascertain the different aspects of this process (economical impact, innovative activities, cost...).
FAIRsharing.3ychgy	Immune Disorder Ontology	ImmDis	The Immune Disorder Ontology was generated as part of the Bioinformatics Integration Support Contract (BISC) funded by the Division of Allergy, Immunology and Transplantation (DAIT) within NIAID. The ontology is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases.
FAIRsharing.43m9f6	Sage Bionetworks Synapse Ontology	SYN	"Sage Bionetworks Synapse Ontology" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/SYN. This text was generated automatically. If you work on the project responsible for "Sage Bionetworks Synapse Ontology" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.446bv0	Ontology of Experimental Variables and Values	OoEVV	The Ontology of Experimental Variables and Values (OoEVV) provides a lightweight representation of (a) the variables used to measure experimental properties and (b) the measurement scales that form the complex data types supporting that data. Many different variables measure the same thing, here we use a lightweight representation driven by a small number of classes and a large number of variables to focus only on providing a vocabulary of variables that may be extended for consolidation to standardized variables for specific things and functions to map between values from different measurements scales. We use the base ontology description to provide a very lightweight representation of the basic elements of an experimental design and we use views to instantiate it for specific domains.
FAIRsharing.44plg5	VOSpace Service Specification	VOSpace	VOSpace is the IVOA interface to distributed storage. This specification presents the second RESTful version of the interface. It specifies how VO agents and applications can use network attached data stores to persist and exchange data in a standard way.
FAIRsharing.44wk5g	Open Connectome Project	OCP	Open Connectome Project: Reverse Engineering the Brain One Synapse at a Time
FAIRsharing.44yp73	LegumeIP	LegumeIP	The LegumeIP 2.0 database hosts large-scale genomics and transcriptomics data and provides integrative bioinformatics tools for the study of gene function and evolution in legumes.
FAIRsharing.46rwe6	Clinical Signs and Symptoms Ontology	CSSO	An ontology for describing clinical signs and symptoms.
FAIRsharing.47tk7z	MIAPE: Capillary Electrophoresis	MIAPE-CE	“MIAPE – Capillary Electrophoresis” (MIAPE-CE) is one module of the Minimal Information About a Proteomics Experiment (MIAPE) documentation system. MIAPE is developed by the Proteomics Standards Initiative of the Human Proteome Organisation (HUPO-PSI). It aims at delivering a set of technical guidelines representing the minimal information required to report and sufficiently support assessment and interpretation of a proteomics experiment. This MIAPE-CE module is the result of a coordinaded effort between a consortia of CE researchers working in proteomics field. It has been designed to specify a minimal set of information to document a CE experiment.
FAIRsharing.48ZQkn	Integrated Marine Information System	IMIS	IMIS is an online information system to provide an overview of the marine scientific landscape in Flanders and beyond. IMIS provides catalogues for: datasets, publications, maps, persons, and institutions, which are are stored in a structured and linked manner. Anyone can submit their own dataset, publication, etc to be added as a record in IMIS, and datasets can be published and given a DOI. Our goal is to be a FAIR data system that is integrated into the European marine community.
FAIRsharing.490xfb	Stem Cell Discovery Engine	SCDE	Comparison system for cancer stem cell analysis
FAIRsharing.49bmk	AnaEE Thesaurus	anaeeThes	The anaeeThes thesaurus aims at providing a controlled vocabulary for the semantic description of the study of continental ecosystems and their biodiversity. The thesaurus consists of concepts handled in different main thematic areas: abiotic (e.g. atmosphere, climate, hydrosphere, litosphere); biotic (e.g. animals, plants, micro-organisms, biodiversity); chemical compounds; experimentation and observation (e.g. instrument, method, protocol, measurement, quality, infrastructure); ecosystems (e.g. type, structure, functioning); modeling (e.g. formalism, platform, type of model, computer language); disciplines (disciplinary and scientific fields); and unit (units of the international system, inherited from the OBOE-standards ontology).
FAIRsharing.4APEVR	Global Project Management System Tuberculosis Transportal	GPMS TB Transportal	Global Project Management System Tuberculosis Transportal (GPMS TB Transportal) is a digital platform piloting TB surveillance in the 4 districts of Karnataka. It is an integrated dashboard that contains the information of all the TB control programs. As per section 3.3 of the Sustainable Development Goals (SDG) of the United Nations, health for all and eradication of TB and Malaria by 2030 are identified targets. GPMS TB Transportal was created to aid the identification of new TB cases, improve treatment compliance, and reduce the death of TB patients in Karnataka. This resource will also be used to develop early TB presumptive patients' diagnoses.
FAIRsharing.4bcrzk	CYTOKINE	CYTO	It is flat ontology showing cytokine synonyms. It has been produced by merging cytokine branches, using SOMA (Synonym Ontology Mapping Approach) method, of 10 Bioportal ontologies.
FAIRsharing.4BQ3AQ	Simple Spectral Access Protocol	SSA	The Simple Spectral Access (SSA) Protocol (SSAP) defines a uniform interface to remotely discover and access one dimensional spectra. SSA is a member of an integrated family of data access interfaces altogether comprising the Data Access Layer (DAL) of the IVOA. SSA is based on a more general data model capable of describing most tabular spectrophotometric data, including time series and spectral energy distributions (SEDs) as well as 1-D spectra; however the scope of the SSA interface as specified in this document is limited to simple 1-D spectra, including simple aggregations of 1-D spectra. The form of the SSA interface is simple: clients first query the global resource registry to find services of interest and then issue a data discovery query to selected services to determine what relevant data is available from each service; the candidate datasets available are described uniformly in a VOTable format document which is returned in response to the query. Finally, the client may retrieve selected datasets for analysis.
FAIRsharing.4bt49f	Polymorphism in microRNAs and their TargetSites	PolymiRTS	PolymiRTS (Polymorphism in microRNAs and their TargetSites) is a database of naturally occurring DNA variations in microRNA (miRNA) seed regions and miRNA target sites. MicroRNAs pair to the transcripts of protein-coding genes and cause translational repression or mRNA destabilization. SNPs and INDELs in miRNAs and their target sites may affect miRNA-mRNA interaction, and hence affect miRNA-mediated gene repression.
FAIRsharing.4bvc6y	Lippincott Williams & Wilkins - Circulation Research - Research Guidelines	None	Circulation Research, a journal created in association with the American Heart Association and the American Stroke Association, has provided a policy describing their guidelines for data deposition and publication. Authors of papers that include genomic, proteomic, or other high-throughput data are required to make their data publicly accessible at the time of publication. Newly reported nucleotide or protein sequences must be deposited in appropriate public repositories. All clinical trials must be registered in a public trials registry at or before the onset of participant enrolment.
FAIRsharing.4c9hhn	TDWG Access Protocol for Information Retrieval	TAPIR	The TDWG Access Protocol for Information Retrieval (TAPIR) is a Web Service protocol and XML schema to perform queries across distributed databases of varied physical and logical structure. It was originally designed to be used by federated networks. TAPIR is intended for communication between applications, using HTTP as the transport mechanism. TAPIR's flexibility makes it suitable to both very simple service implementations where the provider only responds to a set of pre-defined queries, or more advanced implementations where the provider software can dynamically parse complex queries referencing output models supplied by the client.
FAIRsharing.4da1jx	microarray track data Browser Extensible Data Format	None	The microarray track data Browser Extensible Data Format displays configuration files for microarray annotation tracks displayed on the UCSC Genome Browser.
FAIRsharing.4ded1f	Time Event Ontology	TEO	The Time Event Ontology (TEO) is an ontology for representing events, time, and their relationships.
FAIRsharing.4dfs3p	Whole-Cell Knowledge Base	WholeCellKB	WholeCellKB is a collection of open-access model organism databases specifically designed to enable whole-cell models. Currently, WholeCellKB contains a database of Mycoplasma genitalium, a Gram-positive bacterium and common human pathogen. The M. genitalium database is the most comprehensive description of any single organism to date, and was used to develop the first whole-cell computational model. The M. genitalium database was curated from over 900 primary research articles, reviews, books, and databases. The M. genitalium database is extensively cross-referenced to external resources including BioCyc, KEGG, and UniProt. WholeCellKB is also an open-source web-based software program for constructing model organism databases. The WholeCellKB software provides an extensive and fully customizable data model that fully describes individual species including the structure and function of each gene, protein, reaction, and pathway.  WholeCellKB is freely accessible via a web-based user interface as well as via a RESTful web service.
FAIRsharing.4dqw0	The Arabidopsis Information Resource	TAIR	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. Data available from TAIR includes the complete genome sequence along with gene structure, gene product information, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the Arabidopsis research community. Gene product function data is updated every week from the latest published research literature and community data submissions.
FAIRsharing.4e2z82	JRC Data Catalogue	None	The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union. NB: The JRC Data Catalogue is also included in scientific publishers' submission systems as "European Commission, Joint Research Centre (JRC)".
FAIRsharing.4eanvm	Evolutionary Trace	None	Relative evolutionary importance of amino acids within a protein sequence.
FAIRsharing.4ehmy9	Observations and Measurements	O&M	A conceptual schema for observations, and for features involved in sampling when making observations. These provide models for the exchange of information describing observation acts and their results, both within and between different scientific and technical communities. Observations commonly involve sampling of an ultimate feature of interest. This International Standard defines a common set of sampling feature types classified primarily by topological dimension, as well as samples for ex-situ observations. The schema includes relationships between sampling features (sub-sampling, derived samples). This standard describes a UML model for observations and sampling features, which is integrated into the ISO TC 211 Harmonized Model.
FAIRsharing.4g8mkg	Health Indicators Ontology	None	Health Indicators Ontology is an ontology of a number of health related indicator terms and description as well as health status classifications.
FAIRsharing.4ga4vc	Molgula occulta Anatomy and Development Ontology	MOOCCUADO	The first ontology describing the anatomy and the development of Molgula occulta.
FAIRsharing.4ghkfj	Library of Congress Genre/Form Terms for Library and Archival Materials	LCGFT	The Library of Congress Genre/Form Terms for Library and Archival Materials (LCGFT) is a thesaurus that describes what a work is versus what it is about. For instance, the subject heading Horror films, with appropriate subdivisions, would be assigned to a book about horror films. A cataloger assigning headings to the movie The Texas Chainsaw Massacre would also use Horror films, but it would be a genre/form term since the movie is a horror film, not a movie about horror films. The thesaurus combines both genres and forms. Form is defined as a characteristic of works with a particular format and/or purpose. A "short" is a particular form, for example, as is "animation." Genre refers to categories of works that are characterized by similar plots, themes, settings, situations, and characters.
FAIRsharing.4gwycd	Just Enough Results Model Ontology	JERM	The JERM provides a framework to describe SEEK assets and the relationships between assets and the experiments that created them. All assets are related to the scientists that created them and the projects they originate from, so the model captures provenance information as well as physical links between assets. JERM definitions for each type of data in SEEK is different, but highly overlapping and they comply with existing minimal information guidelines where they are available.
FAIRsharing.4jLwoV	Epidemiology & Infection	None	The Instructions for Authors page contains a range of guidelines for publishing in Epidemiology & Infection. Epidemiology & Infection supports the idea that research articles should contain sufficient information to allow others to understand, verify and replicate the findings. We ask authors to provide a Data Availability Statement in their manuscript, describing how readers can access the resources necessary to replicate the findings if they are publicly accessible. If these resources are under embargo, or cannot be publicly released for legal, ethical, commercial or other reasons, the Data Availability Statement should make this clear with a brief explanation.
FAIRsharing.4njvzy	BCCM/MUCL Agro-food & Environmental Fungal Collection	BCCM/MUCL	BCCM/MUCL is a generalist fungal culture collection of over 30 000 filamentous fungi, yeasts and arbuscular mycorrhizal fungi including type, reference and test strains. The collections activities include the distribution of its holdings, the accession of new material in its public, safe and patent domains, and services valorising its holdings and/or expertise to cultivate, isolate and identify fungal diversity in natural and anthropological ecosystems, agro-food (food and feed transformation and spoilage), and fungal-plant interactions.
FAIRsharing.4PesRe	StandardsRegExt: a VOResource Schema Extension for Describing IVOA Standards	StandardsRegExt	StandardsRegExt is an XML encoding standard for metadata about IVOA standards themselves, referred to as StandardsRegExt. It is intended to allow for the discovery of a standard via an IVOA identifier that refers to the standard. It also allows one to define concepts that are defined by the standard which can themselves be referred to via an IVOA identifier (augmented with a URL fragment identifier). Finally, it can also provide a machine interpretable description of a standard service interface. We describe the general model for the schema and explain its intended use by interoperable registries for discovering resources.
FAIRsharing.4Sj3vE	iProX	iProX	iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. The iProX repository employs a web-based proteome data submission process and open sharing of mass spectrometry-based proteomics datasets. iProX is a member of the ProteomeXchange (PX) consortium.
FAIRsharing.4TCb1c	International Council for the Exploration of the Sea Data Portal	ICES Data Portal	The International Council for the Exploration of the Sea (ICES) coordinates and promotes marine research on oceanography, the marine environment, the marine ecosystem, and on living marine resources in the North Atlantic. Data are available on the ICES Data Portal.
FAIRsharing.4ttw2d	Search PRINTS-S	SPRINT	SPRINT provides search access to the data bank of protein family fingerprints (PRINTS).
FAIRsharing.4ufVpm	NASA Socioeconomic Data and Applications Center	SEDAC	The Socioeconomic Data and Applications Center (SEDAC) is a regular member of the World Data System and focuses on human interactions in the environment. Its mission is to develop and operate applications that support the integration of socioeconomic and Earth science data and to serve as an "Information Gateway" between the Earth and social sciences. The SEDAC is one of the Earth Observing System Data and Information System (EOSDIS) Distributed Active Archive Centers (DAACs) that archive and distribute earth science data, managed by NASA's Earth Science Data and Information System Project (ESDIS), as part of the Earth Science Data Systems (ESDS) Program.
FAIRsharing.4vsxkr	Climate Data Guide	None	The Climate Data Guide provides concise and reliable information on the strengths and limitations of the key observational data sets, tools and methods used to evaluate Earth system models and to understand the climate system. Citable expert commentaries are authored by experienced data users and developers, enabling scientists to multiply the impacts of their work and the diverse user community to access and understand the essential data. The Climate Data Guide was named an exemplary community resource by the 2012 U.S. National Academies' report, A National Strategy for Advancing Climate Modeling, and is an element of the strategic plan for NCAR's Climate and Global Dynamics Laboratory. NCAR, the National Center for Atmospheric Research, is located in Boulder, Colorado and is widely respected as a leading institution in the atmospheric and related sciences.
FAIRsharing.4vthvs	Coral Trait Database	None	The Coral Trait Database is a growing compilation of scleractinian coral life history trait, phylogenetic and biogeographic data. As of today, there are 68247 coral observations with 105243 trait entries of 147 traits for 1548 coral species in the database. Most of these entries are for shallow-water, reef-building species.
FAIRsharing.4wden0	EDDA Publication Types Taxonomy	EDDA_PT	The EDDA Publication Types Taxonomy (v1.0) was developed by Tanja Bekhuis (Principal Scientist) and Eugene Tseytlin (Systems Developer) of the Evidence in Documents, Discovery, and Analytics (EDDA) Group. The EDDA Group is a division of TCB Research & Indexing LLC. V
FAIRsharing.4wjhCf	National Archive of Criminal Justice Data	NACJD	Established in 1978, the National Archive of Criminal Justice Data (NACJD) archives and disseminates data on crime and justice for secondary analysis. The archive contains data from over 2,700 curated studies or statistical data series. NACJD is home to several large-scale and well known datasets, including the National Crime Victimization Survey (NCVS), the FBI's Uniform Crime Reports (UCR), the FBI's National Incident-Based Reporting System (NIBRS), and the Project on Human Development in Chicago Neighborhoods (PHDCN). In addition to making data available, NACJD curates and preserves data to ensure that they are accessible now and in the future.  Located within the Inter-University Consortium for Political and Social Research (ICPSR), a research center of the Institute for Social Research (ISR) at the University of Michigan, NACJD is sponsored by the Bureau of Justice Statistics (BJS), the National Institute of Justice (NIJ), and the Office of Juvenile Justice and Delinquency Prevention (OJJDP) of the United States Department of Justice.
FAIRsharing.4xrzw1	Dot Bracket Notation (DBN) - Vienna Format	DBN	The bracket notation for RNA secondary structures Pseudo-knot free secondary structures can be represented in the space-efficient bracket notation, which is used throughout the Vienna RNA package.
FAIRsharing.4yrcbc	FISH Archaeological Sciences Thesaurus	FISH-AST	Terminology used for recording the techniques, recovery methods and materials associated with archaeological sciences. Maintained by Historic England on behalf of the FISH Terminology Working Group.
FAIRsharing.4z037c	LINCS Extended Metadata Standard: Antibody Reagents	LINCS 2: Antibody Reagents	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project. Antibodies are extremely useful because of their high target specificity in detection of proteins, capture of proteins for isolation, purification and quantification, and selective inhibition of protein function (e.g., membrane receptor). Important metadata to be reported include a standardized name and ID of the antibody, identity of the target protein, target organism, information on the immunogen (name, source, modification of the protein/peptide), antibody clonality, antibody isotype, antibody purity, antibody specificity, and whether it was used as a primary or secondary antibody in an assay.
FAIRsharing.4zegak	Role Ontology	RoleO	The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles.
FAIRsharing.4zw0d9	Cnidarian Evolutionary Genomics Database	CnidBase	CnidBase, the Cnidarian Evolutionary Genomics Database, is a tool for investigating the evolutionary, developmental and ecological factors that affect gene expression and gene function in cnidarians.
FAIRsharing.50cFTB	Shared Platform for Antibiotic Research and Knowledge	SPARK	SPARK is a free, openly accessible resource for scientists studying antibiotics for Gram-negative bacteria.
FAIRsharing.50n9hc	CellML	CellML	CellML language is an open standard based on the XML markup language. CellML is being developed by the Auckland Bioengineering Institute at the University of Auckland and affiliated research groups. The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows scientists to share models even if they are using different model-building software. It also enables them to reuse components from one model in another, thus accelerating model building.
FAIRsharing.5125qd	FireDB	FireDB	fireDB is a database of Protein Data Bank structures, ligands and annotated functional site residues. The database can be accessed by PDB codes or UniProt accession numbers as well as keywords.
FAIRsharing.51r558	Protein-ligand affinity change upon mutation	Platinum	Platinum is a manually curated, literature-derived database comprising over 1,000 mutations which for the first time associates experimental information on changes in protein-ligand affinity with the three-dimensional structures of the complex.
FAIRsharing.52qw6p	Description of Plant Viruses	DPVweb	DPVweb provides a central source of information about viruses, viroids and satellites of plants, fungi and protozoa. Comprehensive taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences are provided. The database also holds detailed, curated, information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene. The database will not be updated with sequence or taxonomic data from Aug 2013.
FAIRsharing.53gp75	Investigation Study Assay Tabular	ISA-Tab	Investigation Study Assay Tabular (ISA-Tab) describes the ISA Abstract Model reference implementation specified using the ISA-Tab format. ISA-Tab files are tab separated value (tsv) files, with specific labeled column structures. The ISA model consists of three core entities to capture experimental metadata: investigation, study and assay. The extensible, hierarchical structure of this model enables the representation of studies employing one or a combination of technologies, focusing on the description of its experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships).
FAIRsharing.5403x	Medaka Fish Ontology	MFO	A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.
FAIRsharing.54814g	MDL reaction Format	RXN	MDL reaction Format is used to describe the kinetics of chemical reactions and the chemical structure of the reactants and products.
FAIRsharing.54pw8x	Platynereis Developmental STage	PD_ST	Developmental stages of Platynereis.
FAIRsharing.556qpw	FunTree: A Resource For Exploring The Functional Evolution Of Structurally Defined Enzyme Superfamilies	FunTree	A resource for exploring the evolution of protein function through relationships in sequence, structure, phylogeny and function.
FAIRsharing.55ev2y	The Triticeae Toolbox	T3	The Triticeae Toolbox (T3) is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project (Wheat CAP). Funding is provided by the National Institute for Food and Agriculture (NIFA) and the United States Department of Agriculture (USDA). The current project is funded through NIFA's International Wheat Yield Partnership (IWYP) and part of the Agriculture and Food Research Initiative (AFRI).
FAIRsharing.56399h	NCAR Community Data Portal	CDP	The Community Data Portal (CDP) is a collection of earth science datasets from NCAR, UCAR, UOP, and participating organizations.
FAIRsharing.566n8c	EU Clinical Trial Register	EUCTR	The EU Clinical Trials Register contains information on interventional clinical trials on medicines conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.
FAIRsharing.5744rq	Sample processing and separations controlled vocabulary	sepCV	The sepCV is a controlled vocabulary for teminology associated with sample preparation and sample processing for proteomics. The sepCV was originally designed to provide terminology for the MIAPE GE reporting guidelines and the gelML data transfer format. It has now been expanded to include terminology for gel image informatics to support the MIAPE GI reporting guidelines and the GelInfoML data transfer format. In addition it includes relevant terminology for general sample processing to support the data transfer format of spML. The sepCV is beign jointly developed by the Proteomics Standards Intiative (PSI) and the Metabolomics Standards Intitative (MSI).
FAIRsharing.576wb	Common Metadata Elements for Cataloging Biomedical Datasets	None	The Common Metadata Elements for Cataloging Biomedical Datasets outlines a proposed set of core, minimal metadata elements that can be used to describe biomedical datasets, such as those resulting from research funded by the National Institutes of Health. It can inform efforts to better catalog or index such data to improve discoverability. The proposed metadata elements are based on an analysis of the metadata schemas used in a set of NIH-supported data sharing repositories. Common elements from these data repositories were identified, mapped to existing data-specific metadata standards from to existing multidisciplinary data repositories, DataCite and Dryad, and compared with metadata used in MEDLINE records to establish a sustainable and integrated metadata schema.
FAIRsharing.57xcaw	International Ocean Discovery Program Laboratory Information Management System	IODP LIMS Database	The International Ocean Discovery Program (IODP) is an international research collaboration that coordinates seagoing expeditions to study the history of the Earth recorded in sediments and rocks beneath the ocean floor. This resource contains Phase II of the Integrated Ocean Drilling Program and all of the International Ocean Discovery Program data in the new system.
FAIRsharing.58bd67	Finnish Biodiversity Information Facility Digitarium IPT - GBIF Finland	FinBIF Digitarium IPT - GBIF Finland	Finnish Biodiversity Information Facility (FinBIF) maintains this data repository in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). FinBIF compiles Finnish biodiversity information to one single service for open access sharing and contains information on species, their occurrences, distribution and scientific collections.
FAIRsharing.58ftj3	Massachusetts Medical Society - New England Journal of Medicine - Information for Authors	None	This document offers guidance to authors on the specifications required for manuscript proposals and submission criteria for the NEJM journal.
FAIRsharing.58lHsV	OmicsDB	OmicsDB	OmicsDB offers an integrated platform for studying biological networks in multiple organisms, as well as accessing gene expression data. By expanding the classic single species databases across species, it is possible to leverage the amount of information to an even higher level. Its main goal is to enable researchers to find omics data as well as biological networks (Coexpression, PPI etc). One of the main ideas has been to cover non-model species (Fungal plant pathogens, Sorghum, Cassava etc), to allow researchers in these fields similar oppertunities as researchers in more developed fields (Like Arabidopsis or Yeast).
FAIRsharing.58qvp3	Cell Press - Immunity - Information for Authors	None	Immunity is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Immunity. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.58wjha	da|ra	da|ra	da|ra is the registration agency for social science and economic data jointly run by GESIS and ZBW. In keeping with the ideals of good scientific practice there is a demand for open access to existing primary data so as to not only have the final research results but also be able to reconstruct the entire research process. GESIS and ZBW therefore offer a registration service for social and economic research data. This infrastructure lays the foundation for long-term, persistent identification, storage, localization and reliable citation of research data.
FAIRsharing.5970hq	OBOE: The Extensible Observation Ontology	OBOE	OBOE is a suite of OWL-DL ontologies for modeling and representing scientific observations. The OBOE model is designed as a generic data model with a number of constructs for defining observational data. Key features of OBOE include its ability to represent a wide range of measurement types, a mechanism for specifying measurement context, and the ability to associate the type of entity (e.g., sample, organism, etc.) being measured. OBOE is being used and developed within the Semtools project for describing a wide variety of ecological data stored within the Knowledge Network for Biodiversity (KNB) as well as extensions for ontology-based data annotation and discovery within the MetaCat software infrastructure.
FAIRsharing.59ZSlc	ZebrafishMine	ZebrafishMine	ZebrafishMine is a tool to customize searches of Zebrafish-related biological data including genes, proteins, fish, and reagents
FAIRsharing.5anxc5	Allergy Detector II	ALLERGYDETECTOR	Allergy Detection Ontology.
FAIRsharing.5ckyx7	BCCM/ITM Mycobacteria Collection	BCCM/ITM	BCCM/ITM harbours one the largest and most diverse collections of well-documented mycobacteria worldwide, including the TDR TB-Strain bank. BCCM/ITM is hosted by and sharing its research interests with the Mycobacteriology Unit at the Institute of Tropcial Medicine in Antwerp, dedicated in research to combat tuberculosis, Buruli ulcer and other mycobacterial diseases.
FAIRsharing.5cmtw3	MicroRNA Ontology	MIRNAO	An application ontology for microRNAs.
FAIRsharing.5dvejq	Traditional Medicine Other Factors Value Set	TM-OTHER-FACTORS	The value set for the Other Factors property of the International Classification of Traditional Medicine (ICTM). The World Health Organization, in consultation with a large group of stakeholders in the areas of Traditional Medicine or Complementary and Alternative Medicine and Health Information Systems, has developed a collaborative project plan to produce an international standard terminology and classification system for Traditional Medicine. This resource is part of an effort to produce an international standard for information on TM that is ready for electronic health records and that will serve as a standard for scientific comparability and communication.
FAIRsharing.5dyrkw	Cell Press - Cell Metabolism - Information for Authors	None	Cell Metabolism is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Cell Metabolism. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.5e5n7c	APA Occupational and Employment cluster	APAOCUEMPLOY	APA Occupational and Employment Cluster
FAIRsharing.5epybt	Apollo Library	Apollo Library	The Apollo Library contains machine interpretable representations of epidemics, infectious disease scenarios, and case series.
FAIRsharing.5ey5w6	PseudoBase	PseudoBase	PseudoBase is a collection of RNA pseudoknots that have been made available for retrieval to the scientific community.
FAIRsharing.5fnt4k	Springer Nature - Nature Medicine - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.5ftlhl	ReefTEMPS	ReefTEMPS	ReefTEMPS is a sensors network initiated in 1958 to monitor the coastal area of the South, West and South-West Pacific. This long-term observatory allows the acquisition of several parameters: sea temperature, electrical conductivity / practical salinity, sea pressure / waves height & period / sea level, fluorescence, turbidity, with high or medium frequency (from 1 second to 30 minutes). The main objective is to study the climatic parameters of the tropical ocean with a focus on the coastal sea waters to monitor the long-term effects of global climate change and its impact on coral reefs.
FAIRsharing.5g1fma	MIAPE: Mass Spectrometry	MIAPE-MS	This module identifies the minimum information required to report the use of a mass spectrometer in a proteomics experiment, sufficient to support both the effective (re-)interpretation and (re-) assessment of the data and the potential reproduction of the work that generated it.
FAIRsharing.5gjjsg	Chemical Abstracts Service Registry	CAS Registry	CAS (Chemical Abstracts Service) is a division of the American Chemical Society and contains databases of chemical information. CAS Registry Numbers (often referred to as CAS RNs or CAS Numbers) are universally used to provide a unique, unmistakable identifier for chemical substances. A CAS Registry Number itself has no inherent chemical significance but provides an unambiguous way to identify a chemical substance or molecular structure when there are many possible systematic, generic, proprietary or trivial names.
FAIRsharing.5gw25t	LINCS Pilot Phase 1 Metadata Standards: Protein Reagents	LINCS 1: Protein Reagents	The LINCS Pilot Phase 1 metadata standards annotate reagents outside the context of the experiments in which they were used. A standardized description of protein reagents is critical to link results of different LINCS assay types.
FAIRsharing.5h6xzg	Genome Canada Data Release and Resource Sharing Policy	None	Genome Canada is committed to the principle of rapid data release and sharing of unique resources to the scientific community; Genome Canada-funded projects must therefore share data and resources in a timely fashion with minimal or no restrictions. By providing the scientific community with timely access to the outputs of Genome Canada-funded projects, this data and resource sharing policy is intended to accelerate the translation of research for the benefit of humankind.
FAIRsharing.5hbs1x	mini fast test	MINI-FAST-1	Test of SKOS vocab to see if skos/core#Concept is required
FAIRsharing.5k1aqq	Eligibility Feature Hierarchy	ELIG	We derived a set of 1,437 eligibility features that were organized into a feature hierarchy using 80 breast cancer trials.
FAIRsharing.5mf7bd	Colorectal Cancer Atlas	CRC Atlas	Colorectral Cancer Atlas is an web-based resource which integrates genomic and proteomic pertaining to colorectal cancer cell lines and tissues. Data catalogued includes, quantitative and non-quantitative protein expression, sequence variations, cellular signaling pathways, protein-protein interactions, Gene Ontology terms, protein domains and post-translational modifications (PTMs).
FAIRsharing.5nnxqn	eyeGENE: The National Ophthalmic Genotyping and Phenotyping Network	eyeGENE	The National Ophthalmic Disease Genotyping and Phenotyping Network (eyeGENE®) is a genomic medicine initiative created by the National Eye Institute (NEI), part of the National Institutes of Health (NIH), in partnership with clinics and laboratories across the vision research community. The core mission of eyeGENE® is to facilitate research into the causes and mechanisms of rare inherited eye diseases and accelerate pathways to treatments. eyeGENE® was designed to achieve this goal through clinical and molecular diagnosis coupled with granting controlled access to clinical and genetic information in a data repository, to DNA in a biorepository, and to individuals consented to participate in research and clinical trials. The eyeGENE® Network currently includes a Coordinating Center at the NEI, CLIA†-approved molecular genetic testing laboratories around the Nation, a patient registry, controlled-access centralized biorepository for DNA, and a curated de-identified genotype / phenotype database. These components stimulate patient and eye health care provider interest in genetics-based clinical care and generate involvement in ophthalmic research, thereby accelerating vision research and treatment development for these diseases.
FAIRsharing.5O9YTT	DataverseNO	DataverseNO	DataverseNO (https://dataverse.no/) is a national, generic repository for open research data, owned and operated by UiT The Arctic University of Norway. DataverseNO is aligned with the FAIR Guiding Principles for scientific data management and stewardship. The technical infrastructure of the repository is based on the open source application Dataverse, which is developed by an international developer and user community led by Harvard University. DataverseNO is CoreTrustSeal certified.
FAIRsharing.5pp7gn	Minimum Information about a Neuroscience Investigation	MINI	This module represents the formalised opinion of the authors and the CARMEN consortium, which identifies the minimum information required to report the use of electrophysiology in a neuroscience study, for submission to the CARMEN system
FAIRsharing.5Pze7l	GlyTouCan	GTC	The international glycan structure repository for glycans published in the literature. Any glycan structure, ranging in resolution from monosaccharide composition to fully defined structures can be registered and have an accession number assigned as long as there are no inconsistencies in the structure.
FAIRsharing.5q1k	eQuilibrator - the biochemical thermodynamics calculator	None	Thermodynamics calculator for biochemical reactions. eQuilibrator is a simple web interface designed to enable easy thermodynamic analysis of biochemical systems. eQuilibrator enables free-text search for biochemical compounds and reactions and provides thermodynamic estimates for both in a variety of conditions.
FAIRsharing.5ry74y	BridgeDb	BridgeDb	BridgeDb is a framework and data repository for finding and mapping equivalent identifiers from various databases. BridgeDb provides a framework, live services, and identifier mapping files for genes, gene-variant, proteins, metabolites and interactions.
FAIRsharing.5rzy8w	Minimum Information About Sample Preparation for a Phosphoproteomics Experiment	MIASPPE	Please note: We cannot find an up-to-date website or official reporting guideline document for this resource. As such, we have marked it as Uncertain. Please contact us if you have any information on the current status of this resource.
FAIRsharing.5Sfaz2	International Service of Geomagnetic Indices	ISGI	The International Service of Geomagnetic Indices (ISGI) is in charge of the elaboration and dissemination of geomagnetic indices, and of tables of remarkable magnetic events, based on the report of magnetic observatories distributed all over the planet, with the help of 6 ISGI Collaborating Institutes.
FAIRsharing.5suBHK	IVOA Spectral Data Model	SpectralDM	The IVOA Spectral Data Model is a data model describing the structure of spectrophotometric datasets with spectral and temporal coordinates and associated metadata. This data model may be used to represent spectra, time series data, segments of SED (Spectral Energy Distributions) and other spectral or temporal associations. Work on this Data model has concluded. The development of component models DatasetMetadata, NDCube, and STC2 form a basis set of models on which this specification should be built. It was decided that the timescale between the release of this model and the subsequent conversion to the component model basis is too short to warrant moving forward. Upon the release of the above component models, it is expected that the Spectral model will be revisited, possibly expanding the scope to cover other products such as Eschelle spectra and TimeSeries. This document should serve as a guide for that work. The content of this model satisfies the requirements for which it was generated, so a simple translation of concepts should be a good starting point.
FAIRsharing.5tfcy8	A CLAssification of Mobile genetic Elements	ACLAME	ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.
FAIRsharing.5v08f2	LINCS Pilot Phase 1 Metadata Standards: Small Molecules	LINCS 1: Small Molecules	The LINCS Pilot Phase 1 metadata standards annotate reagents outside the context of the experiments in which they were used. Small molecules are used as perturbagens in LINCS experiments.
FAIRsharing.5vtYGG	SILVA	SILVA	SILVA is a comprehensive, quality-controlled web resource for up-to-date aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains alongside supplementary online services. In addition to data products, SILVA provides various online tools such as alignment and classification, phylogenetic tree calculation and viewer, probe/primer matching, and an amplicon analysis pipeline. With every full release a curated guide tree is provided that contains the latest taxonomy and nomenclature based on multiple references. The SILVA curation team is now part of Bergey’s Trustees and the Protist Reference Taxonomy Project UniEuk, which will further improve the quality of SILVA taxonomy. In order to cope with the dramatic expansion of bacterial and archaeal phyla, we have also teamed up with phylogenomic taxonomy efforts (i.e. Genome Taxonomy Database). SILVA is an ELIXIR Core Data Resource.
FAIRsharing.5x3gnz	Coding Symbols for a Thesaurus of Adverse Reaction Terms	COSTART	Coding Symbols for Thesaurus of Adverse Reaction Terms (COSTART). 5th ed. Rockville (MD). COSTART is used for coding, filing, and retrieving post-marketing adverse drug and biologic experience reports. COSTART is organized in body system and pathophysiology hierarchies, as well as a separate fetal/neonatal category of less than 20 terms. COSTART has been superseded by the Medical Dictionary for Regulatory Activities (MedDRA) Terminology.
FAIRsharing.5Xy1dJ	FAIR Maturity Indicator Gen2-MI-F3	None	The FAIR Maturity Indicator Gen2-MI-F3 measures whether the metadata document contains both its own GUID (which may be different from its address), and whether it also explicitly contains the GUID for the data resource it describes.
FAIRsharing.5y3gdd	Pathway Commons	PC	Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases. Information is sourced from public pathway databases and is readily searched, visualized, and downloaded. The data is freely available under the license terms of each contributing database.
FAIRsharing.5yH3KC	Medicago truncatula Genome Database	MTGD	Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. J. Craig Venter Institute (JCVI; formerly TIGR) has been involved in M. truncatula genome sequencing and annotation since 2002 and has maintained a web-based resource providing data to the community for this entire period. This database stores the latest version of the genome, associated data and legacy project information together with a set of open-source tools.
FAIRsharing.5yn03x	Dataset processing	ONL-DP	This ontology is a module of the OntoNeuroLOG ontology, developed in the context of the NeuroLOG project, a french project supported by ANR (ANR-06-TLOG-024 grant) aiming at integrating distributed heterogeous resources in neuroimaging. If covers the domain of Datasets and the processing of datasets. It includes a detailed taxonomy of datasets in the area of neuroimaging (and especially MR imaging) as well as a taxonomy of medical image processing.
FAIRsharing.62p8w	Scratchpads	Scratchpads	Scratchpads are an online virtual research environment for biodiversity for the sharing of data and the creation of specific research networks. Sites can focus on specific taxonomic groups, the biodiversity of a biogeographic region, or any aspect of natural history. Scratchpads are also suitable for societies or for managing and presenting projects.
FAIRsharing.636kdn	ESRC Data Policies and Standards	ESRC Data Policy	The ESRC Research Data Policy, last updated in March 2015, is underpinned by nine core principles which align with the RCUK Common Principles on Data Sharing. The grant holders are expected to generate scientifically robust data ready for further re-use. This policy aims to support grant holders who collect, produce and re-use data, by defining the roles and responsibilities of researchers, ESRC and its data service provider. The document covers the general principles and policy statements on data access and sharing, including expectations on data quality and management which we expect ESRC grant holders to adhere to.
FAIRsharing.63pjQU	National River Flow Archive	NRFA	The National River Flow Archive (NRFA) is the primary archive of daily and peak river flows for the United Kingdom. The archive incorporates daily, monthly and flood peak data from over 1500 gauging stations. The NRFA holds a wide range of hydrological information to assist in the understanding and interpretation of measured river flows. In addition to time series of gauged river flow, the data centre maintains hydrometric information relating to the gauging stations and the catchments they command and data quantifying other parts of the hydrological cycle.
FAIRsharing.64bk6p	NCBI Probe Database	ProbeDB	The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.
FAIRsharing.64f3va	Phenotype Fragment Ontology	PFO	The Phenotype Fragment Ontology, together with a processing pipeline, enable the automatic decomposition and conceptualization of phenotype descriptions for the human skeletal phenome.
FAIRsharing.64mr5a	NASA GeneLab	genelab	NASA GeneLab expands scientists’ access to experiments that explore the molecular response of terrestrial biology to spaceflight environments. The vast amounts of raw data generated by experiments aboard the International Space Station are being made available to a worldwide community of scientists and computational researchers.
FAIRsharing.658tcg	Observational Medical Outcomes Partnership Standardized Vocabularies	OMOP Standardized Vocabularies	The OMOP Standardized Vocabularies combine a number of different vocabularies that are used for different aspects of recording healthcare information. These different purposes cause the vocabularies to come with different formats, quality, comprehensiveness and coverage, and life cycle. Even though the content of the vocabularies are left intact, the new format and structural elements will result in a different representation of each vocabulary than its native form.
FAIRsharing.65yfxp	Protein Circular Dichroism Data Bank	PCDDB	The Protein Circular Dichroism Data Bank (PCDDB) is an open-access online repository for protein circular dichroism spectral- and meta-data. Users may freely extract and deposit validated data and the validation process is conveniently integrated into the deposition procedure. The PCDDB is a collaborative project between Birkbeck College, University of London and Queen Mary University of London and is funded by the U.K.'s Biotechnology and Biological Sciences Research Council.
FAIRsharing.6641pb	Ontology for Food Processing Experiment	OFPE	OFPE is a generic ontology specialized for food processing experiments, where raw materials are transformed into ﬁnal products. It includes different classes that represent products and activities during food transformation processes, which can be classiﬁed into four main concepts: Product, Operation, Attribute, and Observation. FAIRsharing is unable to contact the developers of this resource, and cannot find a project homepage. Therefore this record's status has been marked as Uncertain. Please get in touch if you have any information regarding this resource.
FAIRsharing.6648ht	The SEQanswers wiki	None	Wiki on all aspects of next-generation genomics. The SEQanswers wiki is a Semantic MediWiki (SMW) site that is edited and updated by the members of the SEQanswers community. The wiki provides an extensive catalogue of manually categorized analysis tools, technologies and information about service providers.
FAIRsharing.665mts	Big Browser Extensible Data Format	BigBed	The bigBed format stores annotation items that can either be simple, or a linked collection of exons, much as BED files do. BigBed files are created initially from BED type files, using the program bedToBigBed. The resulting bigBed files are in an indexed binary format. The main advantage of the bigBed files is that only the portions of the files needed to display a particular region are transferred to UCSC, so for large data sets bigBed is considerably faster than regular BED files.
FAIRsharing.66q7yz	Web-Service Interaction Ontology	WSIO	Web Service Interaction Ontology (WSIO) enables automated interaction with more complex Web services that are typical for example within life sciences. WSIO is however independent of the application domain and relevant for both SOAP and REST Web services, and for batch execution engines in general.
FAIRsharing.675y92	OrtholugeDB	OrtholugeDB	OrtholugeDB contains Ortholuge-based orthology predictions for completely sequenced bacterial and archaeal genomes. It is also a resource for reciprocal best BLAST-based ortholog predictions, in-paralog predictions (recently duplicated genes) and ortholog groups in Bacteria and Archaea. The Ortholuge method improves the specificity of high-throughput orthology prediction.
FAIRsharing.6824pv	European Variation Archive	EVA	The European Variation Archive is an open-access archive that accepts submission of, and provides access to, all types of genetic variation data from all species. All users are able to download any dataset, or query our study catalogue via our variation table. Access to EVA data is also provided by RESTful web services for a variety of applications, such as annotation pipelines.
FAIRsharing.68928q	Aerosol Comparison between Observations and Models	AeroCOM	The AEROCOM-project is an open international initiative of scientists interested in the advancement of the understanding of the global aerosol and its impact on climate.
FAIRsharing.68f4xz	mirDNMR	mirDNMR	mirDNMR is a database for the collection of gene-centered background DNMRs obtained from different methods and population variation data. The database has the following functions: (i) browse and search the background DNMRs of each gene predicted by four different methods, including GC content (DNMR-GC), sequence context (DNMR-SC), multiple factors (DNMR-MF) and local DNA methylation level (DNMR-DM); (ii) search variant frequencies in publicly available databases, including ExAC, ESP6500, UK10K, 1000G and dbSNP and (iii) investigate the DNM burden to prioritize candidate genes based on the four background DNMRs using three statistical methods (TADA, Binomial and Poisson test). In conclusion, mirDNMR can be widely used to identify the genetic basis of sporadic genetic diseases.
FAIRsharing.68thre	Metagenome/Microbes Environmental Ontology	MEO	An Ontology for organismal habitats (especially focused on microbes)
FAIRsharing.6945dq	Common European Research project Information Format	CERIF	This standard allows for a metadata representation of research entities, their activities and interconnections, along with their output. This is captured in highly flexible formal (semantic) relationships, and enables quality maintenance, archiving, access and interchange of research information, so supporting knowledge transfer to decision makers, for research evaluation, research managers, strategists, researchers, editors and the general public.
FAIRsharing.69734m	Medical Educational Resource Aggregator	MERA	The educational resource ontology is designed in order to provide structure to resources aggregated by the educational resource aggregator. The aim of the educational resource aggregator is to harvest educational resources from 3rd party repositories, present these to the medical expert for annotation and rating, and output the results of the annotation (together with resource metadata) to the CARRE public RDF repository. The main parts of this aggregator are: the Resource Retriever, the Resource Rating, the Resource Metadata Processing, and the User Application. The educational metadata involve the Resource Metadata processing module.This module is a combination of 3 services that collect data per article, making multiple SPARQL requests to enrich the data and finally store it as a unique identified resource into the local datastore. Then data is transformed into RDF triples in order to be inserted to CARRE educational repository. The ontology is developed using the Protégé v5.0 , a free, open-source ontology editor from the Stanford University. The ontology is available on CARRE rdf repository among the other ontologies. CARRE url : http://carre.kmi.open.ac.uk/ontology/educational.owl
FAIRsharing.6AmTXC	Biodiversity Exploratories Information System	BExIS	BExIS is the online data repository and information system of the Biodiversity Exploratories Project (BE). The BE is a German network of biodiversity related working groups from areas such as vegetation and soil science, zoology and forestry. Up to three years after data acquisition, the data use is restricted to members of the BE. Thereafter, the data is usually publicly available.
FAIRsharing.6ax9gn	Reproductive trait and phenotype ontology	REPO	Ontology for livestock reproductive traits and phenotypes.
FAIRsharing.6b9re3	NeuroImaging Tools and Resources Collaboratory	NITRC	Neuroimaging Informatics Tools and Resources Collaboratory Resources Registry (NITRC-R) describes software tools and resources, vocabularies, test data, and databases. It is intended to extend the impact and longevity of previously funded neuroimaging informatics contributions. NITRC-R gives researchers access to tools and resources, categorization and organization of existing tools and resources, facilitation of interactions between researchers and developers, and promotion of best practices through enhanced documentation and tutorials. NITRC’s scientific focus includes: MR, PET/SPECT, CT, EEG/MEG, optical imaging, clinical neuroimaging, computational neuroscience, and imaging genomics software tools, data, and computational resources.
FAIRsharing.6ba5fw	Alliance of Genome Resources	None	The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse model organisms in understanding the genetic and genomic basis of human biology, health and disease.
FAIRsharing.6brn4p	ImMunoGeneTics Ontology	IMGT	IMGT-ONTOLOGY provides a specific vocabulary of the terminology to be used in immunogenetics and immunoinformatics. The ontology allows for the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional and three-dimensional structures.
FAIRsharing.6brrxe	Genetic Codes	Genetic Codes	NCBI takes great care to ensure that the translation for each coding sequence (CDS) present in GenBank records is correct. Central to this effort is careful checking on the taxonomy of each record and assignment of the correct genetic code for each organism and record.
FAIRsharing.6bsfgf	Recommended reporting guidelines for life science resources	Reporting guidelines for research resources	Recommended reporting guidelines for research resources frequently used in biomedical research, including antibodies, constructs, cell lines, model organisms and knockdown reagents. The purpose of these guidelines is to determine what information is required to uniquely identify a resource, either using "extrinsic" identifiers or providing sufficient metadata about "intrinsic" attributes to identify sufficiently characterize a resource. The Resource Identification Initiative was developed as an extension of these guidelines.
FAIRsharing.6bvac4	China Data Center	CDC	Founded in 1997, the China Data Center was designed to serve as an international center for advancing the study and understanding of China. A primary goal of the Center was the integration of historical, social and natural science data in a geographic information system. Its missions were: to support research in the human and natural components of local, regional and global change; to promote quantitative research on China; to promote collaborative research in spatial studies; and to promote the use and sharing of China data in teaching and research. The center was partnered with several Chinese government agencies and companies in distributing China statistical data and publications and providing data services outside of China. Building upon other efforts, including the China in Time and Space project, the Center brought together data inaccessible to many scholars because of format and language difficulty. A fundamental role of the Center was the development of cooperative endeavors with China, with other universities, and institutions around the world.
FAIRsharing.6bw40w	Graphical Pathway Markup Language	GPML	Markup Language for graphical representations of biological pathways.
FAIRsharing.6bxcr4	Systematized Nomenclature of Medicine, International Version	SNMI	Cote, Roger A., editor. Systematized Nomenclature of Human and Veterinary Medicine: SNOMED International. Northfield (IL): College of American Pathologists; Schaumburg (IL): American Veterinary Medical Association, Version 3.5, 1998.
FAIRsharing.6c4fvf	TDR Targets	TDR Targets	TDR Targets integrates chemical and genomic information and allows users to prioritize targets and compounds to develop and repurpose new drugs and chemical tools for human pathogens.  The TDR Target Project was started in 2005 after a call for applications was launched by TDR (Special Programme for Research and Training in Tropical Diseases). As a result, the TDR Targets Database was established to help develop a portfolio of candidate drug targets for 5 major human pathogens. This then became a resource for prioritizing targets for neglected tropical diseases. TDR Targets is led and run by the Trypanosomatics group at IIB-UNSAM (Argentina, https://trypanosomatics.org) with help with external collaborators worldwide.
FAIRsharing.6cdn9x	Earthref.org	Earthref.org	Earthref.org is a compilation of of databases, networks and repositories for data and models on Earth science. This internet resource supports the quantitative understanding of the Earth as a chemical, physical and biological system.
FAIRsharing.6cnw23	YanHuang - YH1 Genome Database	YH1	The YH database presents the entire DNA sequence of a Han Chinese individual, as a representative of Asian population. This genome, named as YH, is the start of YanHuang Project, which aims to sequence 100 Chinese individuals in 3 years.assembled based on 3.3 billion reads (117.7Gbp raw data) generated by Illumina Genome Analyzer. In total of 102.9Gbp nucleotides were mapped onto the NCBI human reference genome (Build 36) by self-developed software SOAP (Short Oligonucleotide Alignment Program), and 3.07 million SNPs were identified.
FAIRsharing.6cs4bf	Analytical Information Markup Language	AnIML	The Analytical Information Markup Language (AnIML) is the emerging ASTM XML standard for analytical chemistry data. It is currently in pre-release form.
FAIRsharing.6e05x2	Gene Disruption Project Database	GDP Database	The GDP Database provides a public resource of gene disruptions of Drosophila genes using a single transposable element.
FAIRsharing.6eg9a3	Big Gene Prediction	bigGenePred	The bigGenePred format stores annotation items that are a linked collection of exons, much as BED files indexed as bigBeds do. However, the bigGenePred format includes 8 additional fields that contain details about coding frames and other gene-specific information.
FAIRsharing.6ehjqt	Material Rock	MATRROCK	This resource is no longer available because its underlying source material does not exist.
FAIRsharing.6erywc	Experimental data repository for KInetic MOdels of biological SYStems	KiMoSys	KiMoSys is a user-friendly platform that includes a public data repository of relevant published measurements, including metabolite concentrations (time-series and steady-state), flux data, and enzyme measurements in order to build ODE-based kinetic model. It is designed to search, exchange and disseminate experimental data (and associated kinetic models) for the systems modeling community.
FAIRsharing.6f7m6j	Simulation Experiment Description Markup Language	SED-ML	SED-ML is an XML-based format for encoding simulation setups, to ensure exchangeability and reproducibility of simulation experiments. It follows the requirements defined in the MIASE guidelines. SED-ML encodes in a computer-readable exchange format the information required by MIASE to enable reproduction of simulation experiments. It has been developed as a community project and it is defined in a detailed technical specification and additionally provides an XML schema.
FAIRsharing.6g6a84	BRIX generated O Format	None	"BRIX generated O Format" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://www.doe-mbi.ucla.edu/Software/o_man/node306.html. This text was generated automatically. If you work on the project responsible for "BRIX generated O Format" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.6gs502	Stuff Ontology	STUFF	Multiple domain ontologies have various representations of types of stuff--also called matter, mass, or substance--such as milk, alcohol, and mud. This is modelled in a range of different ways that are not quite compatible with each other as they do not adhere to a single structured approach, at times not even within an ontology itself. The Stuff Ontology is a 'bridging' core ontology describing categories of stuff and formalised in OWL for purposes of implementability. It stands on its own, but there are also versions that link to the DOLCE and BFO foundational ontologies, and one with examples to illustrate classification of stuffs (among others, mayonnaise and gold). This then also resolves the main type of interoperability issues with stuffs in domain ontologies, thereby also contributing to better ontology quality.
FAIRsharing.6gz84c	Bio2RDF	Bio2RDF	Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.
FAIRsharing.6gzx48	Springer Nature - Nature Chemistry - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.6hb7c1	Chile National Health Survey 2009-2010	Chile NHS 2009	The Chile National Health Survey 2009-2010 includes health status questionnaires including the SF-12, mental health questionnaires, physical activity questionnaires, and biological measurements taken during a physical exam.
FAIRsharing.6IBl8E	Pathway and Annotated-list Gene-signature Electronic Repository	PAGER 2.0	Pathway and Annotated-list Gene-signature Electronic Repository (PAGER) is an repository for pathways, annotated-lists, and gene signatures (PAGs) related to human network biology.
FAIRsharing.6kP2Dv	Hindawi Research Data Policy	None	Our aim at Hindawi is to foster an open access approach to all research outputs, while ensuring that appropriate attribution is given to those who invest time, thought, and funds into their creation. We therefore encourage all authors to share the data that support the findings of their manuscripts by depositing them in a publicly available data repository wherever possible. This policy identifies how and where best to share data, and also provides guidance on describing its accessibility in a Data Availability statement.
FAIRsharing.6ktmmc	Dfam	Dfam	The Dfam database is a open collection of DNA Transposable Element sequence alignments, hidden Markov Models (HMMs), consensus sequences, and genome annotations. Dfam represents a collection of multiple sequence alignments, each containing a set of representative members of a specific transposable element family. These alignments (seed alignments) are used to generate HMMs and consensus sequences for each family. The Dfam website gives information about each family, and provides genome annotations for a collection of core genomes.
FAIRsharing.6mck	Children's Health Exposure Analysis Resource	CHEAR	Children's health and wellbeing are influenced by interactions between environmental and genetic factors. NIEHS is establishing an infrastructure, the Children's Health Exposure Analysis Resource (CHEAR), to provide the extramural research community access to laboratory and data analyses that add or expand the inclusion of environmental exposures in children's health research. The goal of CHEAR is to provide tools so researchers can assess the full range of environmental exposures which may affect children's health. We anticipate that CHEAR will be used by children's health researchers conducting epidemiological or clinical studies that currently have limited consideration of environmental exposures, or those who have collected exposure data but seek more extensive analyses.
FAIRsharing.6mhzhj	Consolidated criteria for reporting qualitative research	COREQ	A reporting guideline composed of 32 criteria for qualitative research interviews and focus groups.
FAIRsharing.6mk8xz	Minimum Information About a Biofilm Experiment	MIABiE	The minimum information about a biofilm experiment (MIABiE) initiative has arisen from the need to find an adequate and scientifically sound way to control the quality of the documentation accompanying the public deposition of biofilm-related data, particularly those obtained using high-throughput devices and techniques. MIABiE includes several modules, each addressing specific parts of a biofilm study.
FAIRsharing.6mmbzs	Protein-ligand interaction ontology	PLIO	The protein--ligand interaction ontology (PLIO) was developed around three main concepts, namely target, ligand and interaction, and was enriched by adding synonyms, useful annotations and references. PLIO represents knowledge about the interaction of proteins and ligands (including drugs) and has a different scope and conceptual resolution than, for example, the molecular interaction ontology. An important feature of PLIO is that it links directly from an ontology framework describing protein–ligand interactions to the mathematical formulas relevant for the computation of some of the entities represented in the ontology.
FAIRsharing.6mMhZp	rPredictor	rPredictor	rPredictorDB is a predictive database of secondary structures of individual RNAs and their formatted plots.
FAIRsharing.6qd09b	Chemical Process	PROCCHEMICAL	Chemical process
FAIRsharing.6QPjtA	NSF Arctic Data Center	Arctic Data Center	The Arctic Data Center is the primary data and software repository for the Arctic section of NSF Polar Programs. The Center helps the research community to reproducibly preserve and discover all products of NSF-funded research in the Arctic, including data, metadata, software, documents, and provenance that links these together. The repository is open to contributions from NSF Arctic investigators, and data are released under an open license (CC-BY, CC0, depending on the choice of the contributor). All science, engineering, and education research supported by the NSF Arctic research program are included, such as Natural Sciences (Geoscience, Earth Science, Oceanography, Ecology, Atmospheric Science, Biology, etc.) and Social Sciences (Archeology, Anthropology, Social Science, etc.).
FAIRsharing.6qr9jp	e-Mouse Atlas of Gene Expression	EMAGE	The e-Mouse Atlas of Gene Expression (EMAGE) is a freely available database of in situ gene expression patterns that allows users to perform online queries of mouse developmental gene expression. EMAGE is unique in providing both text-based descriptions of gene expression plus spatial maps of gene expression patterns. This mapping allows spatial queries to be accomplished alongside more traditional text-based queries.
FAIRsharing.6qrmz2	Pharmacometrics Markup Language	PharmML	PharmML is an exchange format for non-linear mixed effect models used in pharmacometrics and provides means to encode models, trial designs, and modelling steps. This standard allows for a smooth exchange of models between different software tools used in population pharmacokinetics/pharmacodynamics.
FAIRsharing.6s2sfz	BioTop	BT	A top-domain ontology that provides definitions for the foundational entities of biomedicine as a basic vocabulary to unambiguously describe facts in this domain. This ontology is no longer maintained, as it duplicated much of the content in other ontologies. Though not maintained, this ontology remains available for use. The currently maintained version is BioTopLite 2 (BTL2).
FAIRsharing.6s44n0	MycoBrowser tuberculosis	None	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.
FAIRsharing.6t5q3m	African Traditional Medicine	ATMO	African Traditional Medicine Ontology (ATMO) describes the actors' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom's roles and the disease consideration.
FAIRsharing.6ttpnv	Maize gross anatomy	ZEA	A structured controlled vocabulary for the anatomy of Zea mays.
FAIRsharing.6v2d2h	The Arabidopsis Gene Regulatory Information Server	AGRIS	The Arabidopsis Gene Regulatory Information Server (AGRIS) is a new information resource of Arabidopsis promoter sequences, transcription factors and their target genes. AGRIS currently contains two databases, AtcisDB (Arabidopsis thaliana cis-regulatory database) and AtTFDB (Arabidopsis thaliana transcription factor database). The two databases, used in tandem, provide a powerful tool for use in continuous research.
FAIRsharing.6v96ma	Genome Database for Rosaceae	GDR	The Genome Database for Rosaceae (GDR) is a curated and integrated web-based relational database providing centralized access to Rosaceae genomics and genetics data and analysis tools to facilitate basic, translational and applied research in Rosaceae.
FAIRsharing.6w29qp	VirusMentha	VirusMentha	VirusMentha is a collection of viral interactions manually curated from protein-protein databases that adhere to the IMEx consortium. This resource offers a series of tools to analyse selected proteins in the context of a network of interactions. virus mentha offers direct access to viral families such as: Orthomyxoviridae, Orthoretrovirinae and Herpesviridae plus, it offers the unique possibility of searching by host organism.
FAIRsharing.6xfgaq	VIVO Ontology	VIVO	The VIVO Ontology provides a set of concepts to represent researchers and the full context in which they work. It is used as part of the VIVO project, which uses a collection of ontologies to represent scholarship.
FAIRsharing.6xm1gd	STereoLithography	STL	STL files describe only the surface geometry of a three-dimensional object without any representation of color, texture or other common CAD model attributes. The STL format specifies both ASCII and binary representations.
FAIRsharing.6xwdvb	International Classification of External Causes of Injury	ICECI	The International Classification of External Causes of Injury (ICECI) was created to enable the classification of external causes of injuries. It is designed to help researchers and prevention practitioners to describe, measure and monitor the occurrence of injuries and to investigate their circumstances of occurrence using an internally agreed classification. Criteria underlying the classification are: a separate coding axis for each main concept, usefulness for injury prevention, useability in may types of settings (many parts of the world; emergency departments and other places where data are collected), comparability and complementarity with the ICD-10.
FAIRsharing.6y9h91	ProteomicsDB	PrDB	ProteomicsDB is a protein-centric in-memory database for the exploration of large collections of quantitative mass spectrometry-based proteomics data. ProteomicsDB was first released in 2014 to enable the interactive exploration of the first draft of the human proteome. To date, it contains quantitative data from 78 projects totalling over 19k LC-MS/MS experiments. A standardized analysis pipeline enables comparisons between multiple datasets to facilitate the exploration of protein expression across hundreds of tissues, body fluids and cell lines. We recently extended the data model to enable the storage and integrated visualization of other quantitative omics data. This includes transcriptomics data from e. g. NCBI GEO, protein-protein interaction information from STRING, functional annotations from KEGG, drug-sensitivity/selectivity data from several public sources and reference mass spectra from the ProteomeTools project. The extended functionality transforms ProteomicsDB into a multi-purpose resource connecting quantification and meta-data for each protein. The rich user interface helps researchers to navigate all data sources in either a protein-centric or multi-protein-centric manner. Several options are available to download data manually, while our application programming interface enables accessing quantitative data systematically.
FAIRsharing.6YaUQm	CHOmine	CHOmine	CHOmine integrates many types of data for Cricetulus griseus, and CHO cells. You can run flexible queries, export results and analyse lists of data.
FAIRsharing.6yNXYK	Plant Experimental Condition Ontology	PECO	PECO is a structured, controlled vocabulary for the representation of plant experimental conditions. It describes the treatments, growing conditions, and/or study types used in various types of plant biology experiments.
FAIRsharing.6yw6cp	PANGAEA - Data Publisher for Earth and Environmental Science	PANGAEA	The information system PANGAEA is operated as an Open Access library aimed at archiving, publishing and distributing georeferenced data from earth system research. PANGAEA is a member of the ICSU World Data System (WDS).
FAIRsharing.6zk9ea	Protein-Chemical Structural Interactions	ProtChemSI	Protein-Chemical Structural Interactions provides information on the 3-dimensional chemical structures of protein interactions with low molecular weight.
FAIRsharing.710xh8	Database for Bacterial Group II Introns	Group II introns database	Database for identification and cataloguing of group II introns. All bacterial introns listed are full-length and appear to be functional, based on intron RNA and IEP characteristics. The database names the full-length introns, and provides information on their boundaries, host genes, and secondary structures. In addition, the website provides tools for analysis that may be useful to researchers who encounter group II introns in DNA sequences.
FAIRsharing.72e4we	Chain Format for pairwise alignment	None	The chain format describes a pairwise alignment that allow gaps in both sequences simultaneously. Each set of chain alignments starts with a header line, contains one or more alignment data lines, and terminates with a blank line. The format is deliberately quite dense.
FAIRsharing.72j8ph	Parkinson's Disease Biomarkers Program Data Management Resource	PDBP DMR	The NINDS Parkinson's Disease (PD) Biomarkers Program Data Management Resource enables web-based data entry for clinical studies supporting PD biomarker development, as well as broad data sharing (imaging, clinical, genetic, and biospecimen analysis) across the entire PD research community. The PDBP DMR coordinates information and access to PD biospecimens distributed through the NINDS Human Genetics, DNA, iPSC , Cell Line and Biospecimen Repository and the Harvard Neurodiscovery Initiative.
FAIRsharing.72mafs	LINCS Pilot Phase 1 Metadata Standards: Antibody Reagents	LINCS 1: Antibody Reagents	The LINCS Pilot Phase 1 metadata standards annotate reagents outside the context of the experiments in which they were used. Antibodies are extremely useful because of their high target specificity in detection of proteins, capture of proteins for isolation, purification and quantification, and selective inhibition of protein function (e.g., membrane receptor).
FAIRsharing.72qwj0	StellaBase	StellaBase	StellaBase is the Nematostella vectensis genomics database.
FAIRsharing.737p4k	ISO-15926-2_2003_oil	ISO-15926-2_2003	This ontology describes gas and oil field process level descriptions
FAIRsharing.7388wt	NASA Goddard Earth Sciences Data and Information Services Center	GES DISC	The NASA Goddard Earth Sciences (GES) Data and Information Services Center (DISC) is located at the Goddard Space Flight Center (GSFC) in Greenbelt, Maryland, and is one of 12 NASA Science Mission Directorate Data Centers that provide Earth science data, information, and services to research scientists, applications scientists, applications users, and students. They archive and support data sets applicable to several NASA Earth Science Focus Areas including: Atmospheric Composition, Water & Energy Cycles, and Climate Variability. The GES DISC is one of the Earth Observing System Data and Information System (EOSDIS) Distributed Active Archive Centers (DAACs) that archive and distribute earth science data, managed by NASA's Earth Science Data and Information System Project (ESDIS), as part of the Earth Science Data Systems (ESDS) Program.
FAIRsharing.73cqdk	Pathogen Host Interactions	PHI-base	PHI-Base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts.
FAIRsharing.73reht	Bio-Mirror	Bio-Mirror	A world bioinformatic public service for high-speed access to up-to-date DNA & protein biological sequence databanks.
FAIRsharing.75nsn6	Neuroimaging Data Model	NIDM	The Neuroimaging Data Model (NIDM) is a collection of specification documents and examples that outline a domain specific extension to the W3C Provenance Data Model (PROV-DM) for the exchange and sharing of human brain imaging data. The goal of the data model is to capture data, information about the data and processes that generated the data (i.e. provenance). This information can be converted to RDF and therefore queried using SPARQL. This representation allows machine accessible representations of brain imaging data and will provide links to related resources such as publications, virtual machines, people and funding agencies.
FAIRsharing.75r2zd	Ontology of Clinical Research	OCRe	OCRe is an OWL ontology designed to support the systematic description of, and interoperable queries on, human studies and study elements. Please note that, while this ontology is available for use, it is currently not being actively developed.
FAIRsharing.75rf2e	Nursing Care Coordination Ontology	NCCO	Nursing Care Coordination Ontology contains activities that nurses use while coordinating care among patients.
FAIRsharing.77d397	Functional Coverage of the Proteome	FCP	FCP is a publicly accessible web tool dedicated to analysing the current state and trends on the population of available structures along the classification schemes of enzymes and nuclear receptors, offering both graphical and quantitative data on the degree of functional coverage in that portion of the proteome by existing structures, as well as on the bias observed in the distribution of those structures among proteins.
FAIRsharing.77e3my	Molecular Interaction eXtensible Markup Language	PSI-MI XML	The PSI-MI interchange format and accompanying controlled vocabularies was originally designed by a consortium of molecular interaction data providers from both academia and industry, including BIND, DIP, IntAct, MINT, MIPS, GlaxoSmithKline, CellZome, Hybrigenics, Universities of Bielefeld, Bordeaux, Cambridge, and others. It is maintained, and kept fit for purpose by the Molecular Interaction workgroup of the HUPO PSI. It can be used for storing any kind of molecular interaction data including complexes and binary interactions such as protein-protein interactions and nucleic acid interactions.
FAIRsharing.77jqpc	Disorders cluster	APADISORDERS	APA Disorders cluster, owls loaded from urls.
FAIRsharing.77v8xn	Upper-Level Cancer Ontology	CANONT	Providing an upper-level ontology for cancer.
FAIRsharing.78Lz1O	ProForma	ProForma	Developed by the Consortium for Top-Down Proteomics, ProForma is a standardized notation for writing fully characterized proteoforms. A proteoform is a specific set of amino acids arranged in a particular order, which may be further modified (cotranslationally, posttranslationally or chemically) at designated locations. This nomenclature is intended to be both machine and human readable, and to be sufficiently flexible to meet current and foreseeable needs.
FAIRsharing.78make	Big Multiple Alignment Format	bigMaf	The bigMaf format stores multiple alignments in a format compatible with MAF files, which is then compressed and indexed as a bigBed. The bigMaf files are created using the program bedToBigBed, run with the -as option to pull in a special autoSql (.as) file that defines the fields of the bigMaf.
FAIRsharing.7b0fc3	ThermoML	ThermoML	ThermoML is an XML-based IUPAC standard for storage and exchange of experimental thermophysical and thermochemical property data, first developed as an IUPAC project in 2006, and extended in 2011. At present, ThermoML is being used by a number of process design packages as a data input format, as well as more broadly on the Internet as a data dissemination format.
FAIRsharing.7CVoS6	SynBioHub	SBH	SynBioHub is a design repository for people designing biological constructs. It enables DNA and protein designs to be uploaded, then provides a shareable link to allow others to view them. SynBioHub also facilitates searching for information about existing useful parts and designs by combining data from a variety of sources.
FAIRsharing.7d0yv9	Minimal Information About a Cellular Assay	MIACA	The Minimum Information About a Cellular Assay (MIACA) was developed as an information guideline and a modular Cellular Assay Object Model (CA-OM) that is capable of covering the range of cellular assays possible and which is the basis for efficient data exchange. We invite broad participation in the further development of MIACA and the contents of its object model, to create a widely accepted guideline that will facilitate an efficient assessment of data quality and relevance, and to stimulate the development of databases that will take cell assay data and their accompanying description in a standardized format.
FAIRsharing.7e0974	Ontologized MIABIS	OMIABIS	OMIABIS is an open-source ontology of biobank administration. OMIABIS stands for Ontologized MIABIS where MIABIS is the Minimum Information About BIobank data Sharing.
FAIRsharing.7e2gz0	American Chemical Society - Accounts of Chemical Research  - Information for Authors	ACS - ACR Policy	This policy document sets out information for authors to support manuscript preparation and submission criteria.
FAIRsharing.7E950R	VOResource - an XML Encoding Schema for IVOA Resource Metadata	VOResource	VOResource is an XML encoding standard for IVOA Resource Metadata. This schema is primarily intended to support metadata exchange between and resource discovery in interoperable registries. However, any application that needs to describe resources may use this schema. In this document, we define the types and elements that make up the schema in close alignment to the metadata terms defined in Resource Metadata for the Virtual Observatory, but also taking into account other metadata standards as well as experiences from the operation of the VO Registry. We also describe the general model for the schema and explain how it may be extended to add new metadata terms and describe more specific types of resources.
FAIRsharing.7fc5y6	Eukaryotic Genes	euGenes	euGenes provides a common summary of gene and genomic information from eukaryotic organism databases including gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, product information.
FAIRsharing.7fKiFY	The Digital Archaeological Record	tDAR	The Digital Archaeological Record (tDAR) is an international digital repository for the digital records of archaeological investigations. tDAR’s use, development, and maintenance are governed by the Center for Digital Antiquity, an organization dedicated to ensuring the long-term preservation of irreplaceable archaeological data and to broadening the access to these data.
FAIRsharing.7GA79k	Beilstein Journal of Organic Chemistry	BJOC	The Beilstein Journal of Organic Chemistry is an international, peer-reviewed, Open Access journal. It provides a unique platform for rapid publication without any charges (free for author and reader) – Platinum Open Access. The journal is published and completely funded by the Beilstein-Institut, a non-profit foundation located in Frankfurt am Main, Germany. The journal publishes high quality research and reviews in all areas of organic chemistry, including organic synthesis, organic reactions, natural product chemistry, structural investigations, supramolecular chemistry and chemical biology. In addition, authors retain copyright with a CC-BY 4.0 license.
FAIRsharing.7hp91k	CHARMM Card File Format	CRD	CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a computational package used for classical, quantum and hybrid quantum/classical simulations. The CHARMM Card File Format (.CRD) stores the standard Cartesian coordinates of the atoms in the system and keeps track of additional molecule information that can be useful for manipulation (i.e. residue name, segment name, segment id, resdiue id, etc.).
FAIRsharing.7HtoZI	NERC Earth Observation Data Centre Data Archive	NEODC	The NERC Earth Observation Data Centre Data Archive was the Natural Environment Research Council's (NERC) Designated Data Centre for Earth Observation. Together with the BADC it has been merged into the CEDA Archive.
FAIRsharing.7hxvhz	Drug Interaction Knowledge Base Evidence Ontology	DIKB-Evidence	An evidence taxonomy for pharmacologic studies that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were supported by a specific set of evidence.
FAIRsharing.7IQk4a	Primate Cell Type Database	PCTD	PrimateDatabase.com, a publicly available web-accessible archive of intracellular patch clamp recordings and highly detailed three-dimensional digital reconstructions of neuronal morphology. PrimateDatabase.com is unique because it is currently the largest collection of non-human primate (NHP) intracellular recordings.
FAIRsharing.7JCjD0	Metabolic Atlas	Metabolic Atlas	Metabolic Atlas integrates open source genome-scale metabolic models (GEMs) of human and yeast for easy browsing and analysis. It also contains many more GEMs constructed by our organization. Detailed biochemical information is provided for individual model components, such as reactions, metabolites, and genes. These components are also associated with standard identifiers, facilitating integration with external databases, such as the Human Protein Atlas.
FAIRsharing.7k29h0	Holistic Ontology of Rare Diseases	HORD	This ontology describes the bio-psico-social state of a person of rare diseses in a holistic way. It considers several contents such as disease, psychological, social, environmental state of the person.
FAIRsharing.7ky72t	Natural Products Ontology	NatPrO	An ontology for describing biological activities of natural products.
FAIRsharing.7KZpOx	Policy for IDG Consortium Interaction with Other Entities (Consortia/Institutes /Associations/Biotech/Pharma)	None	IDG members are encouraged to foster collaborations and interactions with individual laboratories/researchers, consortia, associations, pharma, and biotech, as well as other outside entities. The guidelines outlined here are to enhance these interactions for the benefit of sharing IDG outcomes.
FAIRsharing.7m4hza	OryGenesDB: an interactive tool for rice reverse genetics	OryGenesDB	The aim of this Oryza sativa database was first to display sequence information such as the T-DNA and Ds flanking sequence tags (FSTs) produced in the framework of the French genomics initiative Genoplante and the EU consortium Cereal Gene Tags. This information was later linked with related molecular data from external rice molecular resources (cDNA full length, Gene, EST, Markers, Expression data...).
FAIRsharing.7m85ax	Taxonomy for Rehabilitation of Knee Conditions	TRAK	TRAK (Taxonomy for RehAbilitation of Knee conditions) is an ontology that formally models information relevant for the rehabilitation of knee conditions. TRAK provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice.
FAIRsharing.7mFpMg	MorphoSource	MorphoSource	MorphoSource is a digital repository where researchers, museum curators, and the general public can find, download, and upload 3D media representing physical objects, most commonly biological specimens. If you are a researcher, you can use MorphoSource to locate and download 3D media for analysis, and archive and share 3D media you have generated or are currently working on with collaborators, the community, and/or the public. If you are a museum curator, you can use MorphoSource to make digital media representing your collections available to scientific and lay communities. If you are a member of the general public, MorphoSource allows you to virtually explore the "raw data" of evolutionary biology and other sciences through digitally interacting with the biological specimens and other physical objects that underpin cutting-edge scientific thought.
FAIRsharing.7mm5g5	Crystallography Open Database	COD	The Crystallography Open Database (COD) is a project that aims to gather all available inorganic, metal-organic and small organic molecule structural data in one database.
FAIRsharing.7p0xdg	Data Science Education Ontology	DSEO	Simple SKOS Taxonomy denoting subfields of study in data science for use in educational applications.
FAIRsharing.7qBaJ0	Genome Warehouse	GWH	The Genome Warehouse (GWH) is a public archival resource housing genome-scale data for a wide range of species. GWH accepts a variety of data types, including whole genome, chloroplast, mitochondrion and plasmid. For each collected genome assembly, GWH incorporates descriptive information including biological sample metadata, genome assembly metadata, sequence data and genome annotation, and offers standardized quality control for genome sequence and annotation.
FAIRsharing.7qexb2	Plant DNA C-values database	Plant C-Values	A database containing genome size (C-value) data for all groups of land plants and red, green and brown algae.
FAIRsharing.7qwrhY	Canadian Open Neuroscience Platform (CONP) Portal	CONP Portal	The CONP portal is a web interface for the Canadian Open Neuroscience Platform (CONP) to facilitate open science in the neuroscience community. CONP simplifies global researcher access and sharing of datasets and tools. The portal internalizes the cycle of a typical research project: starting with data acquisition, followed by processing using already existing/published tools, and ultimately publication of the obtained results including a link to the original dataset. From more information on CONP, please visit https://conp.ca
FAIRsharing.7rfpgs	LINCS Extended Metadata Standard: Small molecules	LINCS 2: Small molecules	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project. Small molecules are used as perturbagens in LINCS experiments. Small-molecule metadata also include substance-specific batch information, such as compound provider, salt form, molecular mass, purity, and aqueous solubility. For Food and Drug Administration–approved drugs, they proposed reporting additional information, such as drug indication and mechanism of action. If available, Protein Data Bank identifiers of corresponding target small-molecule co-crystal structures should also be reported.
FAIRsharing.7rmkwr	Emergency care ontology	ONTOLURGENCES	Emergency care ontology build during LERUDI project. http://www.ncbi.nlm.nih.gov/pubmed/25160343 (v4.0)
FAIRsharing.7rngj0	International Classification of Functioning, Disability and Health	ICF	The International Classification of Functioning, Disability and Health (ICF) is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels. ICF was officially endorsed by all 191 WHO Member States in the Fifty-fourth World Health Assembly on 22 May 2001 (resolution WHA 54.21) as the international standard to describe and measure health and disability.
FAIRsharing.7s74s8	Sleep Domain Ontology	SDO	An application ontology for the domain of Sleep Medicine.
FAIRsharing.7ti9My	BACPAC Biobehavioral Research Psychosocial Questionnaires and QST Recommendations	None	This document includes recommendations for the following domains: Psychosocial Recommendations, Social Adversity and Support, Other Optional Domains, Quantitative Sensory Testing Recommendations.
FAIRsharing.7tx4ac	Access to Biological Collection Data DNA extension	ABCDDNA	ABCDDNA is a theme specific extension for ABCD (Access to Biological Collections Data) created to facilitate storage and exchange of data related to DNA collection units, such as DNA extraction specifics, DNA quality parameters, and data characterising products of downstream applications, along with the relation to the analysed voucher specimen. ABCDDNA is an XML Schema extension to ABCD 2.06, which offers only a rudimentary set of DNA-specific data ("Sequences"). Although a stable standard, it will be replaced by the Global Genome Biodiversity Network (GGBN) Data Standard specification, which currently has a draft status.
FAIRsharing.7tx9zj	Sweden IPT - GBIF Sweden	None	GBIF-Sweden serves researchers, public authorities and others interested in biodiversity as the Swedish hub for information and international exchange of data on the biological diversity of the world. The ambition of GBIF-Sweden is to continuously harvest and publicly present up-to-date biodiversity data hosted by Swedish institutions and government authorities to stakeholders around the world through the international GBIF portal, in accordance with Swedish commitments under the international GBIF agreement. Where appropriate, GBIF-Sweden also aims to accumulate information about Swedish biodiversity kept elsewhere in the world and provide it to Swedish stakeholders in an appropriate form. Finally, GBIF-Sweden aims to play a leading role in stimulating digitization efforts aimed at increasing the quantity and quality of content provided to GBIF from Swedish institutions.
FAIRsharing.7tz5g8	Nonindigenous Aquatic Species NAS IPT - USGS	NAS IPT - USGS	The Nonindigenous Aquatic Species (NAS) information resource for the United States Geological Survey has been established as a central repository for spatially referenced biogeographic accounts of introduced aquatic species. The program provides scientific reports, online/realtime queries, spatial data sets, distribution maps, and general information. The data are made available for use by biologists, interagency groups, and the general public. The geographical coverage is the United States.
FAIRsharing.7v8q4h	ProteoRed	ProteoRed	Carlos III Networked Proteomics Platform, ProteoRed-ISCIII is a National Network for the coordination, integration and development of the Spanish Proteomics Facilities providing proteomics services for supporting Spanish researchers in the field of proteomics.
FAIRsharing.7vjq5t	PDBsum; at-a-glance overview of macromolecular structures	PDBsum	PDBsum provides an overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them.
FAIRsharing.7x7ha7	Central Aspergillus Data REpository	CADRE	This project aims to support the international Aspergillus research community by gathering all genomic information regarding this significant genus into one resource - The Central Aspergillus REsource (CADRE). CADRE facilitates visualisation and analyses of data using the Ensembl software suite. Much of our data has been extracted from Genbank and augmented with the consent of the original sequencing groups. This additional work has been carried out using both automated and manual efforts, with support from specific annotation projects and the general Aspergillus community.
FAIRsharing.7xdxc2	Portable Network Graphics	None	Portable Network Graphics (PNG) is a raster graphics file format that supports lossless data compression. PNG was created as an improved, non-patented replacement for Graphics Interchange Format (GIF), and is the most used lossless image compression format on the Internet.
FAIRsharing.7y955w	Gene Ontology Extension	GO-EXT	Gene Ontology Extension
FAIRsharing.7ynng	Collection of Anti Microbial Petides R3	CAMP R3	CAMPR3 (Collection of Anti-Microbial Peptides) has been generated to enhance research into AMP families. The collection is compatible with well-known databases such as PubMed and Uniprot with information like sequence, protein definition, accession numbers, structures as well as relevant organisms. Making this database a useful tool in AMP studies.
FAIRsharing.7z842d	CDISC Standard for Exchange of Nonclinical Data	CDISC SEND	CDISC SEND is an implementation of the SDTM standard for nonclinical studies. SEND specifies a way to collect and present nonclinical data in a consistent format.
FAIRsharing.7zfq1a	FlavorDB	FlavorDB	Flavor is an expression of olfactory and gustatory sensations experienced through a multitude of chemical processes triggered by molecules. Beyond their key role in defining taste and smell, flavor molecules also regulate metabolic processes with consequences to health. Such molecules present in natural sources have been an integral part of human history with limited success in attempts to create synthetic alternatives. Given their utility in various spheres of life such as food and fragrances, it is valuable to have a repository of flavor molecules, their natural sources, physicochemical properties, and sensory responses. FlavorDB (http://cosylab.iiitd.edu.in/flavordb) comprises of 25,595 flavor molecules representing an array of tastes and odors. Among these 2254 molecules are associated with 936 natural ingredients belonging to 34 categories. The dynamic, user-friendly interface of the resource facilitates exploration of flavor molecules for divergent applications: finding molecules matching a desired flavor or structure; exploring molecules of an ingredient; discovering novel food pairings; finding the molecular essence of food ingredients; associating chemical features with a flavor and more. Data-driven studies based on FlavorDB can pave the way for an improved understanding of flavor mechanisms.
FAIRsharing.80d8cg	An ontology for experimental actions	EXACT	EXACT aims to explicitly define the semantics of experimental protocols in order to ensure their reproducibility, and to support computer applications that assist biologists in the preparation, maintenance, submission and sharing of experimental protocols.
FAIRsharing.813a1k	LINCS Extended Metadata Standard: Primary Cells	LINCS 2: Primary Cells	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project. To describe primary cells, they incorporated some of the elements proposed in MIACA. The underlying theme among all cell types is their association with a tissue or organ from which the cells were derived. In many cases, the cells are also associated with a disease.
FAIRsharing.81amet	AdaLab-meta ontology	ADALAB-META	AdaLab meta ontology.
FAIRsharing.81dw2c	NCBI UniSTS	NCBI UniSTS	UniSTS was a database of sequence tagged sites (STSs), derived from STS-based maps and other experiments. All data from this resource have been moved to the Probe database. You can retrieve all UniSTS records by searching the probe database using the search term "unists[properties]". Additionally, legacy data remain on the NCBI FTP Site in the UniSTS Repository (ftp://ftp.ncbi.nih.gov/pub/ProbeDB/legacy_unists). If you have any specific questions, please feel free to contact us at info@ncbi.nlm.nih.gov
FAIRsharing.81ettx	Bioconductor	Bioc	Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development.
FAIRsharing.820ebm	Gene Product Information Format	GPI	The need for a way to represent genes/gene products separately from annotations, as well as the need to use the evidence ontology has lead to the creation of the GPAD (Gene Product Annotation Data) and GPI (Gene Product Information) formats, defined here. Whilst GPAD and GPI have been defined for use within the Gene Ontology Consortium for GO annotation, this specification is designed to be reusable for analagous ontology-based annotation - for example, gene phenotype annotation. GPI and GPAD documents consist of sequences of Unicode characters and are encoded in UTF-8 [RFC 3629].
FAIRsharing.82n9jp	Electronic Care Plan	ECP	Our focus in this work is to define in a formal way (ontology-based) and platform independent representative metadata and relationships of care plans. This approach has as goal to work as an umbrella over all these systems and provides some advantages regarding the management, the organization and the searching of formal care plans.
FAIRsharing.82t0w2	Leukocyte Surface Markers	LSM	An ontology of CD markers for lymphocyte classification in the cell ontology, and other categories of surface and secreted proteins useful for discriminating between lymphocyte subsets by flow cytometry, ELISPOT, ELISA and other assays typically used for phenotypic identification of individual lymphocytes or lymphocyte populations have been included.
FAIRsharing.831m3y	Comprehensive Yeast Genome Database	CYGD	A major part of this information gets extracted by manual annotation from the yeast literature, and results of the systematic functional analysis projects as well as cross-references to other in-house or external databases (NCBI, PIR, PEDANT, EMBL) provide complementary material. In addition information and links to related ascomycetous species are added as far as genomic information is available. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
FAIRsharing.83jovl	T-psi-C	tpsic	T-psi-C is a database of tRNA sequences and 3D tRNA structures. The T-psi-C database can be continuously updated by any member of the scientific community.
FAIRsharing.83wDfe	Ag Data Commons	Ag Data Commons	The Ag Data Commons is a public, government, scientific research data catalog and repository available to help the agricultural research community share and discover research data funded by the United States Department of Agriculture and meet Federal open access requirements. Ag Data Commons holds data files managed directly by NAL and also links to datasets and resources located on other websites. The Ag Data Commons provides access to a wide variety of open data relevant to agricultural research and related domains. These may include subjects such as agronomy, genomics, hydrology, soils, agro-ecosystems, sustainability science, and economic statistics. Ag Data Commons was created to foster innovative data re-use, integration, and visualization to support bigger, better science and policy.
FAIRsharing.84ebcy	Stem Cell Commons	SCC	The Stem Cell Commons were initiated by the Harvard Stem Cell Institute to develop a community for stem cell bioinformatics. This open source environment for sharing, processing and analyzing stem cell data brings together stem cell data sets with tools for curation, dissemination and analysis. Standardization of the analytical approaches will enable researchers to directly compare and integrate their results with experiments and disease models in the Commons.
FAIRsharing.84Gh9z	AHCODA-DB	AHCODA-DB	AHCODA-DB is a data repository with web-based mining tools for the analysis of automated high-content mouse phenomics data. It provides users with tools to systematically explore mouse behavioural data, both with positive and negative outcome, published and unpublished, across time and experiments with single mouse resolution.
FAIRsharing.84Ltoq	PlanMine	PlanMine	PlanMine is an integrated web resource of data & tools to mine Planarian biology.
FAIRsharing.8532n8	DermLex: The Dermatology Lexicon	DermLex	DermLex: The Dermatology Lexicon standardized terminology of dermatologic diagnoses, therapies, procedures, and laboratory tests.
FAIRsharing.85k1jm	International Classification of Diseases Version 10 - Procedure Coding System	ICD-10-PCS	The ICD-10 Procedure Coding System (ICD-10-PCS) is an international system of medical classification used for procedural coding. The ICD-10-PCS is a procedure classification published by the United States for classifying procedures performed in hospital inpatient health care settings. The ICD-10-PCS replaces the procedural coding portion (Volume 3) of ICD-9-CM.
FAIRsharing.86302v	British Geological Survey GeoScenic	BGS GeoScenic	A national archive of geological photographs freely available to the public.
FAIRsharing.88b6b5	Protein Classification Benchmark Collection	None	The Protein Classification Benchmark Collection was created in order to create standard datasets on which the performance of machine learning methods can be compared.
FAIRsharing.88kgtp	Bioimaging	Bioimg	Bioimg is a central storage server for all the imaging data acquired at the Imaging Units at theWeizmann Institute of Science (WIS) together with instruments of Research Groups in WIS. The data is automatic and incrementally copied to Bioimg several times a day. Metadata can be added to the files to track experiment's information and important notes and to enable efficient search. The stored data is available campus-wide over the network, and can be shared with other users. The Bioimg is available for other Institutions. FAIRsharing does not know the current status of this resource, and we have therefore marked its status as Uncertain. Please contact us if you have any recent information on this resource.
FAIRsharing.88wme4	OpenTopography	OpenTopography	The National Science Foundation funded OpenTopography facilitates community access to high-resolution, Earth science-oriented, topography data, and related tools and resources.
FAIRsharing.89hcdg	Patient Derived Xenograft Minimum Information	PDX-MI	Patients-derived tumor xenograft (PDX) mouse models are an important oncology research platform to study tumor evolution, drug response and personalised medicine approaches. We identified critical attributes to accurately describe PDX production and usage and proposed the PDX-Minimum information (PDX-MI) standard, which defines the minimal information for describing the clinical attributes of a patient’s tumor, the processes of implantation and passaging of tumors in a host mouse strain, quality assurance methods, and the use PDX models in cancer research. PDX-MI standard is the result of the collaborative work from more than 50 worldwide experts over 30 worldwide institutions.
FAIRsharing.89qcm2	Neuroscience Information Framework Gross Anatomy	NIF_GrossAnatomy	"Neuroscience Information Framework Gross Anatomy" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/nif. This text was generated automatically. If you work on the project responsible for "Neuroscience Information Framework Gross Anatomy" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.8a0a61	Fulgoromorpha Lists On the Web	FLOW	Fulgoromorpha Lists On the Web (FLOW) is an online database that aims to provide an easy-access summary of available biological published primary data on planthoppers (Hemiptera, Fulgoromorpha), a group of major economic importance. It includes information on taxonomy, nomenclature, bibliography, distribution and various associated biological information on host-plants and parasites (including fossils).
FAIRsharing.8a7a0w	verteberate Homologous Organ Groups	vHOG	vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. A mapping to species-specific anatomical ontologies is also provided. This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and we provide confidence codes and references when available.
FAIRsharing.8ajxrw	Neuroscience Domain Insight Graphs	neuDIGs	Neuroscience Domain Insight Graphs (neuDIGs) was created to serve the needs of systems-level neuroscience: an advanced, complex scientific subject. The goal is to provide a large-scale, practical, common representation for neuroscientific knowledge that is primarily concerned with properties and characteristics of neuron populations that may (or may not) be explicitly identified by name.
FAIRsharing.8btktm	Observations and Measurements OWL implementation	om-lite	An OWL representation of the Observation Schema described in clauses 7-8 of ISO 19156:2011 Geographic Information - Observations and Measurements.
FAIRsharing.8bva0r	BioXpress	BioXpress	BioXpress is a curated gene expression and disease association database where the expression levels are mapped to genes.
FAIRsharing.8bwhme	PCR Primer Database for Gene Expression Detection and Quantification	PrimerBank	PrimerBank is a public resource for PCR primers. These primers are designed for gene expression detection or quantification (real-time PCR). PrimerBank contains over 306,800 primers covering most known human and mouse genes. There are several ways to search for primers: GenBank Accession, NCBI protein accession, NCBI Gene ID, Gene Symbol, PrimerBank ID or Keyword (gene description) or you can blast your gene sequence against the primerbank Sequence DB.
FAIRsharing.8d3ka8	ImMunoGeneTics Information System	IMGT	IMGT is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility complex (MHC) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), major histocompatibility complex superfamily (MhcSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates.
FAIRsharing.8dak0r	Open Regulatory Annotation	ORegAnno	The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known regulatory elements from scientific literature. Annotation is collected from users worldwide for various biological assays and is automatically cross-referenced against PubMED, Entrez Gene, EnsEMBL, dbSNP, the eVOC: Cell type ontology, and the Taxonomy database.
FAIRsharing.8DCv6L	Cross-Linguistic Data Formats	CLDF	Cross-Linguistic Data Formats (CLDF) is a format for exchanging cross-linguistic data. CLDF provides modular specifications for common data types in language typology and historical linguistics, which are based on a shared data model and a formal ontology. The main type of cross-linguistic data relevant to this format is tabular data that is typically analysed using quantitative (automated) methods or made accessible using software tools like the `clld` framework, such as wordlists, structure datasets and simple dictionaries. Each CLDF dataset is described by a JSON metadata file according to Model for Tabular Data and Metadata on the Web (CSVW) tabular metadata specification.
FAIRsharing.8drfwh	ICM binary file Format	ICB	ICM binary file Format is used in databases pertaining to structural biology and protein families. This format can be used for the graphical representation of RNA, DNA, and proteins interactions.
FAIRsharing.8DrzMv	Sociology Vocabulary	None	Controlled vocabulary used for indexing bibliographical records for the "Sociology" FRANCIS database (1972-2015). It consists of 5275 entries in 2 languages (English, French).
FAIRsharing.8ecbxx	NucleaRDB	NucleaRDB	Families of nuclear hormone receptors
FAIRsharing.8eh6er	Minimal Information for Mouse Phenotyping Procedures	MIMPP	MIMPP is a reporting guideline for the minimum information that should be reported about a mouse phenotyping procedure to enable unambiguous interpretation and comparison of the data and to allow the data to be shared through communal resources.
FAIRsharing.8ezzRt	SimpleDALRegExt - Describing Simple IVOA Data Access Services	SimpleDALRegExt	An application that queries or consumes descriptions of VO resources must be able to recognize a resource's support for standard IVOA protocols. The SimpleDALRegExt specification describes how to describe a service that supports any of the four typed data access protocols - Simple Cone Search (SCS), Simple Image Access (SIA), Simple Spectral Access (SSA), Simple Line Access (SLA) - using the VOResource XML encoding standard. A key part of this specification is the set of VOResource XML extension schemas that define new metadata that are specific to those protocols. SimpleDALRegExt describes rules for describing such services within the context of IVOA Registries and data discovery as well as the VO Support Interfaces (VOSI) and service self-description. In particular, this document spells out the essential mark-up needed to identify support for a standard protocol and the base URL required to access the interface that supports that protocol.
FAIRsharing.8F5DRF	MS Global Data-Sharing Initiative	None	The Multiple Sclerosis International Federation (MSIF) and the Multiple Sclerosis Data Alliance (MSDA) have teamed up to form a Global Data Sharing Initiative to achieve insights on the effect of COVID-19 in people with MS as fast as possible, with the intent to steer clinical decision-making during the pandemic.
FAIRsharing.8frn6v	Histoimmunogenetics Markup Language	HML	Histoimmunogenetics Markup Language (HML) is intended as a potentially general-purpose XML format for exchanging genetic typing data. This format supports NGS based genotyping methods, raw sequence reads, registered methodologies, reference data, complete reporting of allele and genotype ambiguity and MIRING compliant reporting.
FAIRsharing.8fy3bn	The mitochondrial DNA breakpoints database	MitoBreak	A comprehensive on-line resource with curated datasets of mitochondrial DNA (mtDNA) rearrangements.
FAIRsharing.8fyd11	Elsevier - The Lancet - Information for Authors	None	The Information for Authors page contains a broad range of guidelines for publishing in The Lancet. With regards to data deposition, novel gene sequences should be deposited in a public database (GenBank, EMBL, or DDBJ), and the accession number provided. Authors of microarray papers should include in their submission the information recommended by the MIAME guidelines. Authors should also submit their experimental details to one of the publicly available databases: ArrayExpress or GEO.
FAIRsharing.8ggr5j	PeroxisomeDB	PeroxisomeDB	The aim of PEROXISOME database (PeroxisomeDB) is to gather, organise and integrate curated information on peroxisomal genes, their encoded proteins, their molecular function and metabolic pathway they belong to, and their related disorders.
FAIRsharing.8gwskw	Network of Cancer Genes	NCG	The Network of Cancer Genes (NCG) contains information on duplicability, evolution, protein-protein and microRNA-gene interaction, function, expression and essentiality of cancer genes from manually curated publications . NCG also provides information on the experimental validation that supports the role of these genes in cancer and annotates their properties (duplicability, evolutionary origin, expression profile, function and interactions with proteins and miRNAs).
FAIRsharing.8gzcwa	UniCarb-DB	UniCarb-DB	UniCarb-DB is a curated database of glycomic mass spectrometry fragment data.
FAIRsharing.8h2a6z	Article Minimum Information Standard	AMIS	To help authors ensure in the future that necessary information is present in their article, the Article Minimum Information Standard (AMIS) guidelines have been defined. The guideline describes the mandatory (and useful) information that should be mentioned in literature articles to facilitate the curation process. These guidelines extend the minimal information defined by the MISFISHIE format (Deutsch at al. 2008, Nature Biotechnology).
FAIRsharing.8hDgMC	ECRIN Clinical Research Metadata Schema	ECRIN MDR schema	The schema is designed to support the discoverability of data objects generated by clinical research and is an extension of the DataCite schema. It also summarises a relational database structure that could be used to store the metadata within a central repository of such data.
FAIRsharing.8j2p80	Neural-Immune Gene Ontology	NIGO	The Neural-Immune Gene Ontology (NIGO) is a subset of GO directed for neurological and immunological systems. NIGO was created by clipping those GO terms that are not associated to any gene in human, rat and mouse, and by clipping terms not found to be relevant to the neural and/or immune domains.
FAIRsharing.8jns8	e-Mouse Atlas Project Anatomy Ontology	EMAP	A structured controlled vocabulary of stage-specific anatomical structures of the mouse used within the e-Mouse Atlas Project.
FAIRsharing.8kd5e5	ProRepeat: An Integrated Repository for Studying Amino Acid Tandem Repeats in Proteins	None	ProRepeat is an integrated curated repository and analysis platform for in-depth research on the biological characteristics of amino acid tandem repeats. ProRepeat collects repeats from all proteins included in the UniProt knowledgebase, together with 85 completely sequenced eukaryotic proteomes contained within the RefSeq collection.
FAIRsharing.8mhvs4	ISO 19110 Methodology for Feature Cataloguing	ISO19110	ISO 19110:2005 Methodology for feature cataloguing
FAIRsharing.8mr27c	Nature Publishing Group - Nature Structural & Molecular Biology - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.8njqwk	Candidate Cancer Gene Database	CCGD	The Candidate Cancer Gene Database (CCGD) was developed to disseminate the results of transposon-based forward genetic screens in mice that identify candidate cancer genes. The purpose of the database is to allow cancer researchers to quickly determine whether or not a gene, or list of genes, has been identified as a potential cancer driver in a forward genetic screen in mice.
FAIRsharing.8ntfwm	Standards for Reporting Enzymology Data Guidelines	STRENDA	STRENDA stands for “Standards for Reporting Enzymology Data”. For researchers it is essential to be able to compare, evaluate, interpret and reproduce experimental research results published in the literature and databases. Thus, for enzyme research, the STRENDA Commission has established standards for data reporting with the aim to improve the quality of data published in the scientific literature.  The STRENDA Guidelines were developed through extensive interactions with the biochemistry community to define the minimum information that is needed to correctly describe assay conditions (List Level 1A) and enzyme activity data (List Level 1B). However, STRENDA aims neither to dictate or limit the experimental techniques used in enzymology experiments nor to establish a metric for judging the quality of experimental data, but to ensure that data sets are complete and validated, allowing scientists to review, reuse and verify them. The emphasis is on providing useful and reliable information. With the aim to support authors to comprehensively report kinetic and equilibrium data from their investigations of enzyme activities, currently more than 55 international biochemistry journals already included the STRENDA Guidelines in their Instructions for Authors. The STRENDA Commission is continuously consulting the wider science community, reports the progress of its work and discusses new approaches regularly at the Beilstein Enzymology Symposia and in scientific journals.
FAIRsharing.8pbhs0	Multiple sclerosis ontology	MSO	Multiple sclerosis ontology integrated with Basic formal ontology.
FAIRsharing.8pjgwx	PLEXdb	PLEXdb	PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data.
FAIRsharing.8qzmtr	PSI Molecular Interaction Controlled Vocabulary	PSI-MI CV	A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative. The Molecular Interactions Working group page can be found at http://www.psidev.info/groups/molecular-interactions.
FAIRsharing.8rcq0v	NIDDK (National Institute of Diabetes and Digestive and Kidney Diseases) Data Sharing Policy	NIDDK Data Sharing Policy	The NIDDK Data Sharing policy was established to balance the interests of the study investigators with those of the larger scientific research community by setting a defined period of exclusive access by study investigators; after that time data will become “publicly” available through the NIDDK Data Repository.
FAIRsharing.8sz2fa	TDWG Specimen LSID Ontology	TDWGSPEC	Biodiversity Information Standards (TDWG) is an international not-for-profit group that develops standards and protocols for sharing biodiversity data. They have a detailed collection of vocabularies and ontologies for studies of biological organisms.
FAIRsharing.8tnnrs	Vaccination Informed Consent Ontology	VICO	The Vaccination Informed Consent Ontology (VICO) is a community-driven ontology in the domain of vaccination/immunization informed consent. It extends the Informed Consent Ontology and integrates related OBO foundry ontologies, such as the Vaccine Ontology, with a focus on vaccination screening questionnaires in the vaccination informed consent domain. VICO could support a platform for vaccination informed consent data standardization, data integration, and data queries.
FAIRsharing.8vv5fc	Minimum Information About a Proteomics Experiment	MIAPE	MIAPE attempts to define the minimum set of information about whole proteomics experiments that would be required by a public repository.
FAIRsharing.8wgn56	Plant names in botanical databases	None	This standard defines the taxonomic and nomenclatural concepts associated with the names of plants. It describes the component parts, their functions and their interrelations of significance in structuring a database. The appendices provide an outline of a preliminary data dictionary illustrating possible elements and their properties. It does not provide a data model or a data format. A data model will be considered at a later date by the TDWG Sub-group considering this standard. While this standard is still in use, it is no longer actively maintained (labelled as prior on the TDWG website).
FAIRsharing.8xecy7	FuGEFlow	FuGEFlow	FuGEFlow represents a collaborative effort to develop of flow cytometry experimental workflow description based on the FuGE model. The Functional Genomics Experiment data model (FuGE) describes common aspects of comprehensive, high-throughput experiments. FuGE is an extendable model that provides a basis for creation of new technology-specific data formats, such as FuGEFlow for flow cytometry.
FAIRsharing.8xmrgq	Pathogenic Disease Ontology	PDO	An ontology for describing both human infectious diseases caused by microbes and the diseases that is related to microbial infection.
FAIRsharing.8xv099	Phylogenetics Ontology	PHAGE	This ontology represents the seven steps of phylogenetic analyses. Each root concept step is composed from a set of resource annotations (to represent the data-flow) and programs (to represent the control flow). Object properties serve to represent relations to annotate data (e.g. has_RetrievedInDatabase, has_ModeledBy, etc.) and reorder the sequence of programs (e.g. has_InputOutput).This ontology has been collected in a semi-automated way from well-known databases such as NCBI, GeneOntology, UniProtKB and Felsenstein’s Web site through Web crawling and mapping techniques.
FAIRsharing.8y5ayx	Common Workflow Language	CWL	The CWL is an informal, multi-vendor working group consisting of various organizations and individuals that have an interest in portability of data analysis workflows. We have created specifications that enable data scientists to describe analysis tools and workflows that are powerful, easy to use, portable, and support reproducibility. CWL builds on technologies such as JSON-LD and Avro for data modeling and Docker for portable runtime environments. CWL is designed to express workflows for data-intensive science, such as Bioinformatics, Chemistry, Physics, and Astronomy.
FAIRsharing.8ye60e	Agile Protein Interactomes Dataserver	APID Interactomes	APID Interactomes (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). The interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.
FAIRsharing.8yqqm4	WheatGenome.info	WheatGenome.info	An integrated database and portal for wheat genome information.
FAIRsharing.8z3xzh	Minimum Information about a Molecular Interaction Experiment	MIMIx	MIMIx is a community guideline advising the user on how to fully describe a molecular interaction experiment and which information it is important to capture. The document is designed as a compromise between the necessary depth of information to describe all relevant aspects of the interaction experiment, and the reporting burden placed on the scientist generating the data.
FAIRsharing.8zf3ny	Universal PBM Resource for Oligonucleotide Binding Evaluation	UniPROBE	The UniPROBE (Universal PBM Resource for Oligonucleotide Binding Evaluation) database hosts data generated by universal protein binding microarray (PBM) technology on the in vitro DNA binding specificities of proteins.
FAIRsharing.8zz0xc	denovo-db	denovo-db	denovo-db is a collection of germline de novo variants identified in the human genome. de novo variants are those present in children but not their parents.
FAIRsharing.90sesn	Springer Nature Research Data Policy Type 2 (for life sciences)	None	The Springer Nature Research Data Policy Type 2 (for life sciences) encourages data sharing and evidence of data sharing. Materials described in the manuscript, including all relevant raw data, will be freely available to any researcher wishing to use them for non-commercial purposes, without breaching participant confidentiality. The journal strongly encourages that all datasets on which the conclusions of the paper rely should be available to readers. Authors are encouraged to ensure that their datasets are either deposited in publicly available repositories (where available and appropriate) or presented in the main manuscript or additional supporting files whenever possible. Journals adhering to this policy recommend 1) the resources listed directly within this record, and 2) all resources listed in this record's parent policies (see the "extends" relationship).
FAIRsharing.90yw2f	Worm Developmental Dynamics Database	WDDD	This database is a collection of quantitative information about cell division dynamics in early Caenorhabditis elegans embryos when each of all essential embryonic genes is silenced individually by RNA interference (RNAi). The information is obtained by combining four-dimensional differential contrast interference (DIC) microscopy and computer image processing. The information collection provides novel opportunities for developing quantitative and computational approaches towards understanding animal development.
FAIRsharing.9228fv	French Crop Usage	CROPUSAGE	A thesaurus about crops cultivated in France. The hierarchy is based on the final destination of the crop (human food, animal breeding, food industry) and the cultivated system. The hierachy is not based on scientific agronomic taxon like (species, genus). We are interested on categorize the usage of the crop, not on the plant classification.
FAIRsharing.923a0p	Ensembl Genomes	Ensembl Genomes	The Ensembl genome annotation system, developed jointly by EMBL-EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy.
FAIRsharing.92dt9d	ProteomeXchange	ProteomeXchange	The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination.
FAIRsharing.93gy4v	Listeria innocua and Listeria monocytogenes genomes database	ListiList	ListiList is a database dedicated to the analysis of the genomes of the food-borne pathogen, Listeria monocytogenes, and its non-pathogenic relative, Listeria innocua. Its purpose is to collate and integrate various aspects of the genomic information from L. monocytogenes, a paradigm for bacterial-host interactions.
FAIRsharing.940ayh	Model Organism Protein Expression Database	MOPED	Model Organism Protein Expression Database is a collection of data on protein expression sequence used in the study of clinical research.
FAIRsharing.956df7	STAndards for the Reporting of Diagnostic accuracy	STARD	The objective of the STARD initiative is to improve the accuracy and completeness of reporting of studies of diagnostic accuracy, to allow readers to assess the potential for bias in the study (internal validity) and to evaluate its generalisability (external validity). The STARD statement consists of a checklist of 25 items and recommends the use of a flow diagram which describes the design of the study and the flow of patients.
FAIRsharing.95n1ns	National Agricultural Library Thesaurus	NALT	The National Agricultural Library Thesaurus (NALT) is an online vocabulary of agricultural terms in English and Spanish. The Agricultural Thesaurus and Glossary were first released by the National Agricultural Library in 2002. In 2007, NAL and the Inter-American Institute for Cooperation on Agriculture (IICA) collaborated to develop the Spanish version of the NAL Agricultural Thesaurus and Glossary, named Tesauro Agricola y Glosario. The thesaurus is primarily used for indexing and for improving retrieval of agricultural information. The subject scope of agriculture is broadly defined in the thesaurus, and includes terminology in the supporting biological, physical and social sciences. Biological nomenclature comprises a majority of the terms in the thesaurus, with political geography mainly described at the country level.
FAIRsharing.95wk6e	Type 2 Diabetes Knowledge Portal	T2D KP	The Type 2 Diabetes Knowledge Portal is an open-access resource for human genetic information on type 2 diabetes (T2D). It is a central repository for data from large genomic studies that identify DNA variants whose presence is linked to altered risk of having T2D or related traits such as high body mass index. Pinpointing these DNA variants, and the genes they affect, will spur novel insights about how T2D develops and suggest new potential targets for drugs or other therapies to treat T2D.
FAIRsharing.96xqbf	PTMcode	PTMcode	PTMCode is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins.
FAIRsharing.975659	PRIDE XML Format	PRIDE XML Format	XML submission format for the PRIDE repository at the EBI.
FAIRsharing.97kZl6	SalmoBase	SalmoBase	SalmoBase is an integrated molecular resource for Salmonid species which includes visualizations and analytic tools. The genome of the Atlantic salmon (Salmo salar) has undergone extensive restructuring since a whole genome duplication event ~80 million years ago, which creates opportunities to explore the evolutionary process of rediploidization. A public genome assembly is available and ordered into 29 chromosome files. SalmoBase includes a GBrowse interface for exploring the chromosome sequence as well as BLAST functionality and links to expression levels, gene and SNP information. Using public RNAseq data 37,000 high confidence protein coding genes have been identified, wherein almost half show splice variants.
FAIRsharing.97z25b	Ontology for Geography Markup Language	GML3.0	The Geography Markup Language (GML) is an RDF encoding for the transport and storage of geographic information, including both the geometry and properties of geographic features. Vocabulary terms are declared using OWL language to support RDF applications.
FAIRsharing.990a1b	Autism Knowledgebase	Autism KB	Autism genetics KnowledgeBase, an evidence-based knowledgebase of autism genetics.
FAIRsharing.9918b9	Anatomic Pathology Lexicon	PATHLEX	PathLex, a comprehensive lexicon—a unified language of anatomic pathology terms—for standardized indexing and retrieval of anatomic pathology information resources.
FAIRsharing.9997ek	The MGA Data Repository	MGA	The Mass Genome Annotation (MGA) Data Repository stores published next generation sequencing data and other genome annotation data (such as gene start sites, SNPs, etc.) that, in conjunction with the ChIP-Seq and SSA servers, can be accessed and studied by scientists. The main characteristic of the MGA database is to store mapped data (in the form of genomic coordinates of mapped reads) and not sequence files. In this way, each sample present in the database has been pre-processed (for example sequence reads have been mapped to a genome) and presented in a standardized text format.
FAIRsharing.99sey6	Organelle Genome Resource	None	The organelle genomes are part of the NCBI Reference Sequence (RefSeq) project that provides curated sequence data and related information for the community to use as a standard.
FAIRsharing.99t4hg	Nurse Administrator	ADMIN	This is an ontology showing a nurse administrator's process domain
FAIRsharing.9a3ok9	Simple Line Access Protocol	SLAP	The Simple Line Access Protocol (SLAP) is an IVOA Data Access protocol which defines a protocol for retrieving spectral lines coming from various Spectral Line Data Collections through a uniform interface within the VO framework. These lines can be either observed or theoretical and will be typically used to identify emission or absorption features in astronomical spectra. It makes use of the Simple Spectral Line Data Model (SSLDM) to characterize spectral lines through the use of uTypes. Physical quantities of units are described by using the standard Units DM. SLAP services can be registered in an IVOA Registry of Resources using the VOResource Extension standard, having a unique ResourceIdentifier in the Registry. The SLAP interface is meant to be reasonably simple to implement by service providers. A basic query will be done in a wavelength range for the different services. The service returns a list of spectral lines formatted as a VOTable. Thus, an implementation of the service may support additional search parameters (some which may be custom to that particular service) to more finely control the selection of spectral lines. The specification also describes how the search on extra parameters has to be done, making use of the support provided by the Simple Spectral Line Data Model (SSLDM).
FAIRsharing.9aa0zp	Minimum Information about any (x) Sequence	MIxS	The minimum information about any (x) sequence (MIxS) is an overarching framework of sequence metadata, that includes technology-specific checklists from the previous MIGS and MIMS standards, provides a way of introducing additional checklists such as MIMARKS, and also allows annotation of sample data using environmental packages.
FAIRsharing.9ATgeT	NORMAN Substance Database	NORMAN SusDat	NORMAN SusDat is a compilation of information provided by NORMAN network members and has merged many chemical lists provided to the NORMAN Suspect List Exchange (NORMAN-SLE) into a common format and includes selected identifiers and predicted values as a service for NORMAN members. NORMAN-SLE, established in 2015 as a central access point for NORMAN members (and others) to find suspect lists relevant for their environmental monitoring question, is a part of this resource.
FAIRsharing.9BlNcl	Climate Change Centre Austria Data Server	CCCA Data Server	The Climate Change Centre Austria (CCCA) Data Server provides the central Austrian archive for climate data and information. The data includes observation and measurement data, scenario data, quantitative and qualitative data, as well as measurement data and findings of research projects. CCCA aims to support interoperability and promote collaboration between different climate science and research communities in Austria, reducing data redundancy and loss of data.
FAIRsharing.9btkvp	Online Resource for Community Annotation of Eukaryotes	ORCAE	The Online Resource for Community Annotation of Eukaryotes (ORCAE) is an online genome annotation resource offering users the necessary tools and information to validate and correct gene annotations. It is a gene-centric wiki-style annotation portal offering public access to a wide variety of plant, fungal and animal genomes. The basic setup of ORCAE is highly comparable to wiki systems such as MediaWiki, and the information page for each gene can be seen as a ‘topic’ page of a traditional text wiki.
FAIRsharing.9btRvC	China National GeneBank DataBase	CNGBdb	The China National GeneBank database (CNGBdb) is a unified platform for biological big data sharing and application services. At present, CNGBdb has integrated a large amount of internal and external biological data from resources such as CNGB, NCBI, and the EBI. There are a number of sub databases in CNGBdb, including literature, variation, gene, genome, protein, sequence, organism, project, sample, experiment, run, and assembly. Based on underlying big data and cloud computing technologies, it provides various data services, including archive, analysis, knowledge search, management authorization of biological data. CNGBdb adopts data structures and standards of international omics, health, and medicine, such as The International Nucleotide Sequence Database Collaboration (INSDC), The Global Alliance for Genomics and Health GA4GH (GA4GH), Global Genome Biodiversity Network (GGBN), American College of Medical Genetics and Genomics (ACMG), and constructs standardized data and structures with wide compatibility. All public data and data services provided by CNGBdb are freely available to all users worldwide.
FAIRsharing.9d08ks	NeuroMorpho.Org brain region ontologies	NMOBR	The species, brain regions and cell types are integrated into a single ontology for enabling OntoSearch functionality to mine the latest v7.0 release of NeuroMorpho.Org.
FAIRsharing.9dbmwg	Comprehensive Antibiotic Resistance Database	CARD	A bioinformatic database of antimicrobial resistance genes, their products and associated phenotypes.
FAIRsharing.9enwm8	Marine Geoscience Data System	MGDS	Marine Geoscience Data System is a freely available suite of tools and resources to access data on the global oceans for marine research.
FAIRsharing.9ff9zj	Biofresh IPT - GBIF Belgium	None	The Belgium Biodiversity Platform hosts this data repository on behalf of BioFresh in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Biofresh is an EU-funded international project that aims to build a global information platform for scientists and ecosystem managers with access to all available databases describing the distribution, status and trends of global freshwater biodiversity. BioFresh integrates the freshwater biodiversity competencies and expertise of 19 research institutions.
FAIRsharing.9fmyc7	The Pain and Interoception Imaging Network	PAIN	The PAIN Repository is a brain imaging archive for structural and functional magnetic resonance scans (MRI, fMRI and DTI) hosted at UCLA and open to all pain investigators.
FAIRsharing.9fN9gy	ASCII File Format Guidelines for Earth Science Data	None	The ASCII File Format Guidelines for Earth Science Data recommend practices for formatting and describing ASCII encoded data files, such that the files will be self-describing and adhere to common conventions. These guidelines address a number of common-sense practices that can make data files encoded in ASCII more widely useful.
FAIRsharing.9fz3g3	Tandem Repeats Database	TRDB	Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis.
FAIRsharing.9gx9at	Genome Annotation File version 1	None	Annotation data is submitted to the GO Consortium in the form of gene association files, or GAFs. This standard lays out the format specification for GAF 1.0
FAIRsharing.9h5j8c	The CXI File Format for Coherent X-ray Imaging	CXI	The CXI ﬁle format was created as common format for all the data in the Coherent X-ray Imaging Data Bank (CXIDB). Naturally its scope is all experimental data collected during Coherent X-ray Imaging experiments as well as all data generated during the analysis of the experimental data.
FAIRsharing.9HiHNn	WheatMine	WheatMine	WheatMine integrates many types of data for Triticum aestivum including gene model, markers, and scaffolds. You can run flexible queries, export results and analyse lists of data.
FAIRsharing.9hynwc	FORCE11 Data Citation Principles	FORCE11 DC	The FORCE11 Data Citation Principles cover the purpose, function, and attributes of citations. These principles recognize the dual necessity of creating citation practices that are both human understandable and machine-actionable The aim of this neutral resource is to bring about a change in modern scholarly communications through the effective use of information technology.
FAIRsharing.9iYFcl	Repository Universitas Medan Area	Repository of Medan Area University	Repository of Medan Area University is an institutional repository that collects, preserves, and distributes digital material from the university.
FAIRsharing.9jpd3v	Berkeley Drosophila Transcription Network Project	BDTNP	A database containing the expression patterns of hundreds of Drosophila genes in 3D at cellular resolution.
FAIRsharing.9k5mbg	National Microbial Pathogen Data Resource	NMPDR	The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma.
FAIRsharing.9k7at4	Aspergillus Genome Database	ASPGD	The Aspergillus Genome Database is a resource for genomic sequence data as well as gene and protein information for Aspergilli. This publicly available repository is a central point of access to genome, transcriptome and polymorphism data for the fungal research community.
FAIRsharing.9LtMwv	Adolescent Brain Cognitive Development Data Repository	ABCD Data Repository	The ABCD Data Repository houses all data generated by the Adolescent Brain Cognitive Development (ABCD) Study. The ABCD Study is a landmark, longitudinal study of brain development and child health. Investigators at 21 sites around the country will measure brain maturation in the context of social, emotional and cognitive development, as well as a variety of health and environmental outcomes. This repository stores data generated by ABCD investigators, serves as a collaborative platform for harmonizing these data, and shares those data with qualified researchers. Please note that, while querying and browsing data is publicly available, all subject-level data is available behind a login.
FAIRsharing.9mfexc	Minimum Information About a Genotyping Experiment	MIGen	MIGen recommends the standard information required to report a genotyping experiment, covering: study and experiment design, subject information, sample collection and processing, genotyping procedure, and data analysis methods, if applicable.
FAIRsharing.9nns5e	RegenBase	RegenBase	RegenBase is a knowledge base of SCI biology. RegenBase integrates curated literature-sourced facts and experimental details from publications, raw assay data profiling the effect of compounds on enzyme activity and cell growth, and structured SCI domain knowledge in the form of the first ontology for SCI, using Semantic Web representation languages and frameworks. RegenBase enables researchers to organize and interrogate experimental data generated by spinal cord injury (SCI) research, with the ultimate goal of translating SCI experimental findings in model organisms into human therapies.
FAIRsharing.9ntzb2	GBIF Togo IPT - GBIF France	None	GBIF France hosts this data repository on behalf of GBIF Togo in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT).
FAIRsharing.9pk35x	EMBO Press Recommended Databases and Data Standards	EMBO Recommended Databases and Data Standards	The EMBO Press Recommended Databases and Data Standards is a document which describes the requirements for data deposition and formatting for papers submitted to an EMBO Press journal.
FAIRsharing.9pm45h	Diabetes Mellitus Diagnosis Ontology	DDO	An ontology for diagnosis of diabetes containing the diabetes related complications, symptoms, drugs, lab tests, etc.
FAIRsharing.9ppftz	Photorhabdus luminescens genome database	PhotoList	PhotoList, contains a database dedicated to the analysis of the genome of Photorhabdus luminescens. This analysis has been described in: "The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens"
FAIRsharing.9psjsk	Ontology of Physical Exercises	OPE	The Ontology of Physical Exercises (OPE) provides a reference for describing an exercise in terms of functional movements, engaged musculoskeletal system parts, related equipment or monitoring devices, intended health outcomes, as well as target ailments for which the exercise might be employed as a treatment or preventative measure.
FAIRsharing.9qv71f	Systems Biology Markup Language	SBML	The Systems Biology Markup Language (SBML) is a machine-readable exchange format for computational models of biological processes. Its strength is in representating phenomena at the scale of biochemical reactions, but it is not limited to that. By supporting SBML as an input and output format, different software tools can operate on the same representation of a model, removing chances for errors in translation and assuring a common starting point for analyses and simulations.
FAIRsharing.9raft1	Centre for Ecology & Hydrology Data	CEH Data	National environmental data sets
FAIRsharing.9ry4cz	GoMapMan	GMM	GoMapMan is an open web-accessible resource for gene functional annotations in the plant sciences. It was developed to facilitate improvement, consolidation and visualization of gene annotations across several plant species.
FAIRsharing.9s300d	Type 1 Diabetes Database	T1DBase	T1DBase focuses on two research areas in type 1 diabetes (T1D): the genetics of T1D susceptibility and beta cell biology.
FAIRsharing.9sdcx8	Multiple Alignment Format	MFA	The Multiple Alignment Format stores DNA level multiple alignments in an easily readable format between entire genomes. Unlike previous formats this resource can cope with forward and reverse strand directions, multiple pieces to the alignment, and so forth.
FAIRsharing.9sef2s	SKY/M-FISH and CGH	None	The goal of the SKY/M-FISH and CGH database is to provide a public platform for investigators to share and compare their molecular cytogenetic data.
FAIRsharing.9sza27	Growth Medium Onotology	GMO	A structured controlled vocabulary for describing ingredients that constitute microbial growth media used in biological research centers.
FAIRsharing.9thw6y	HIVCompoundRels	HIVCRS	The Ontology to express the ternary relations of HIV1
FAIRsharing.9vT2Wg	BioCatalogue	BioCatalogue	The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Services in the BioCatalogue can be described and searched in multiple ways based upon their technical types, bioinformatics categories, user tags, service providers or data inputs and outputs. They are also subject to constant monitoring, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. The system is accessible via a human-readable ‘Web 2.0’-style interface and a programmatic Web Service interface. The BioCatalogue follows a community approach in which all services can be registered, browsed and incrementally documented with annotations by any member of the scientific community.
FAIRsharing.9vyk3d	JCB DataViewer	JCB DataViewer	The JCB DataViewer is an image hosting and visualization platform for original microscopy image datasets associated with articles published in The Journal of Cell Biology, a peer-reviewed journal published by The Rockefeller University Press. The JCB DataViewer can host multidimensional fluorescence microscopy images, 3D tomogram data, very large (gigapixel) images, and high content imaging screens. Images are presented in an interactive viewer, and the "scores" from high content screens are presented in interactive graphs with data points linked to the relevant images. The JCB DataViewer uses the Bio-Formats library to read over 120 different imaging file formats and convert them to the OME-TIFF image data standard.
FAIRsharing.9xcr4z	CIDOC Conceptual Reference Model	CIDOC-CRM	The CIDOC Conceptual Reference Model (CRM) provides definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation. The CIDOC CRM is intended to promote a shared understanding of cultural heritage information by providing a common and extensible semantic framework that any cultural heritage information can be mapped to. It is intended to be a common language for domain experts and implementers to formulate requirements for information systems and to serve as a guide for good practice of conceptual modelling. In this way, it can provide the "semantic glue" needed to mediate between different sources of cultural heritage information, such as that published by museums, libraries and archives.
FAIRsharing.9xsgcr	Phenotype eXchange Format	PXF	The health of an individual organism results from a complex interplay between its genes and environment. Although great strides have been made in standardizing the representation of genetic information for exchange, there are no comparable standards to represent phenotypes (e.g. patient symptoms and disease features) and environmental factors (Figure 1). Phenotypic abnormalities of individual organisms are currently described in diverse places and in diverse formats: publications, databases, health records, registries, clinical trials, and even social media. However, the lack of standardization, accessibility, and computability among these contexts makes it extremely difficult to effectively extract and utilize these data, hindering the understanding of genetic and environmental contributions to disease.
FAIRsharing.9xytp6	UK Environmental Observation Framework	UKEOF	This schema, expressed in XML, defines four elements which relate to the environmental monitoring object types: Programme, Activity, Network and Facility.
FAIRsharing.9y3gv0	Enzyme Structure Function Ontology	ESFO	The ESFO provides a new paradigm for organizing enzyme sequence, structure, and function information, whereby specific elements of enzyme sequence and structure are mapped to specific conserved aspects of function, thus facilitating the functional annotation of uncharacterized enzymes. The ESFO helps prevent misannotation by emphasizing annotation of enzymes only at the level of functional granularity warranted by available information. The archive is a static snapshot of the data in the SFLD as of April 2019, and will not be updated
FAIRsharing.9yf7w3	Data Collection Ontology	GDCO	The Data Collection Ontology (DCO) is an ontology designed for data collection providing classes and relations on top of the Basic Formal Ontology (BFO) to facilitate data collection processes, subjects, and data anaylsis through the use of classifiers. DCO is based on the notion of reasoning to validate incoming data through their definitions based on classifiers.
FAIRsharing.9yHHCp	Electronics and Optoelectronics Vocabulary	None	Vocabulary used for indexing bibliographical records dealing with “Electronics” in the PASCAL database, until 2014. This resource consists of 4454 entries in 3 languages (English, French and Spanish) classified under 19 collections.
FAIRsharing.9zpcgj	Amino Acid Ontology	None	Amino Acid Ontology is an ontology of amino acids and their properties. It captures how biochemists talk about amino acids; that is, it is a conceptualisation of amino acids. This ontology smoothens out the way in which amino acids are described as the chemical reality tends to obscure rather than reveal what may be considered important features of amino acids. This ontology serves as a demonstration of a move towards a sort of mass production of axiomatically rich ontologies.
FAIRsharing.9zvUmk	Portland Press Data Policy	None	A condition of publication for any research article in all Biochemical Society journals is that others should be able to replicate and build upon the published findings. At Portland Press, we have adapted the submission process and platform to facilitate compliance with our Data Policy whilst minimising the impact on authors. This Data Policy provides guidelines to outline the expectations and to provide support at every stage of the publishing process.
FAIRsharing.a08mtc	ToxoDB	ToxoDB	ToxoDB is a free online resource that provides access to genomic and functional genomic data for Toxoplasma and related organisms. The resource contains over 30 fully sequenced and annotated genomes, with genomic sequence from multiple strains available for variant detection and copy number variation analysis. In addition to genomic sequence data, ToxoDB contains functional genomic datasets including microarray, RNAseq, proteomics, ChIP-seq, and phenotypic data. In addition, results from a number of whole-genome analyses are incorporated, including mapping to orthology clusters, which allows users to leverage phylogenetic relationships in their analyses.
FAIRsharing.a0f9nt	Elsevier's Data Policy	None	A list of the repositories recommended by Elsevier. Elsevier journals have different guidelines when it comes to research data, either encouraging or requiring you take certain actions. Although much research data is disseminated as part of journal articles, a host of other data is not made available through article publication. Our research data policy sets a framework for how we can and will support researchers to make their research data available. Some journals may adopt their own data sharing policies and these can be found in your journal’s guide for authors.
FAIRsharing.A0ozDj	Genome Properties	Genome Properties	Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome. This is a reimplementation at EMBL-EBI of a resource previously hosted at JCVI.
FAIRsharing.a0r156	Ontology of Glucose Metabolism Disorder	OGMD	Ontology of Glucose Metabolism Disorder includes disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. It must be used with other two ontologies, in the case of Diabetes: the Ontology of Geographical Region (OGR) and the Ontology for Genetic Disease Investigations (OGDI). Together, these three ontologies form the Ontology for Genetic Susceptibility Factor (OGSF), which is the project where information about this ontology is stored.
FAIRsharing.a0yy2x	Integrating Network Objects with Hierarchies Event Ontology	IEV	INOH Event Ontology (IEV) is a structured controlled vocabulary of pathway centric biological processes used to annotate biological processes, pathways, sub-pathways in the INOH pathway data. .
FAIRsharing.a1j1a7	Pre-eclampsia Ontology	PE-O	The PEO incorporates a wide range of key concepts and terms of PE from clinical and biomedical research in structuring the knowledge base that is specific to PE.
FAIRsharing.a1rp4c	MetaBase - The wiki-database of biological databases	MB	MetaBase is the community-curated collection of all biological databases for use by the research community as a source of reliable information.
FAIRsharing.A29ckB	Biodiversity Thesaurus	Biodiversity	The Biodiversity Thesaurus is a bilingual thesaurus describing biodiversity in its fundamental and applied ecological components. This resource consists of >600 terminological entries grouped into >70 collections. Each descriptor has a large number of synonyms and searchable variants in English and French. The concepts are grouped by semantic categories, domains and EBV classes. It is aligned with Agrovoc and Gemet thesauri
FAIRsharing.A2W4nz	FAIR Metrics - Metadata Longevity	FM-A2	FM-A2 measures the existence of metadata even in the absence/removal of data. Cross-references to data from a third-party’s FAIR data and metadata will naturally degrade over time, and become “stale links”. In such cases, it is important for FAIR providers to continue to provide descriptors of what the data was to assist in the continued interpretation of those third-party data. As per FAIR Principle F3, this metadata remains discoverable, even in the absence of the data, because it contains an explicit reference to the IRI of the data. This metric requires a URL to a formal metadata longevity plan. This metric applies to part A2 of the FAIR Principles.
FAIRsharing.a46gtf	Biologic Specimen and Data Repository Information Coordinating Center	BioLINCC	The goal of Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) is to facilitate and coordinate the existing activities of the NHLBI Biorepository and the Data Repository and to expand their scope and usability to the scientific community through a single web-based user interface. BioLINCC provides a wealth of information on historical NHLBI clinical and epidemiologic studies which have data or biospecimens in the NHLBI repositories, and includes study summaries, references, and study operational documents.
FAIRsharing.a4wgws	Real-time PCR Data Markup Language	RDML	The RDML file format is developed by the RDML consortium (http://www.rdml.org) and can be used free of charge. The RDML file format was created to encourage the exchange, publication, revision and re-analysis of raw qPCR data. The core of an RDML file is an experiment, not a PCR run. Therefore all the information is collected which is required to understand an experiment. The structure of the file format was inspired by a database structure. In the file are several master elements, which are then referred to in other parts of the file. This structure allows to reduce the amount of redundant information and encourages the user to provide useful information. The Real-time PCR Data Markup Language (RDML) is a structured and universal data standard for exchanging quantitative PCR (qPCR) data. The data standard should contain sufficient information to understand the experimental setup, re-analyse the data and interpret the results. The data standard is a compressed text file in Extensible Markup Language (XML) and enables transparent exchange of annotated qPCR data between instrument software and third-party data analysis packages, between colleagues and collaborators, and between authors, peer reviewers, journals and readers. To support the public acceptance of this standard, both an on-line RDML file generator is available for end users, as well as RDML software libraries to be used by software developers, enabling import and export of RDML data files.
FAIRsharing.a4ww64	The Ecosystem Ontology	ECSO	DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases
FAIRsharing.a4ybgg	Indel Flanking Region Database	IndelFR	Indel Flanking Region Database is an online resource for indels (insertion/deletions) and the flanking regions of proteins in SCOP superfamilies. It aims at providing a comprehensive dataset for analyzing the qualities of amino acid indels, substitutions and the relationship between them.
FAIRsharing.a557he	Ontology of Cardiovascular Drug Adverse Events	OCVDAE	With increased usage of cardiovascular drugs (CVDs) for treating cardiovascular diseases, it is important to analyze CVD-associated adverse events (AEs). The Ontology of Cardiovascular Drug Adverse Events (OCVDAE) is an ontology of adverse events associated with cardiovascular disease drugs. It extends the Ontology of Adverse Events (OAE) and NDF-RT. OCVDAE includes 194 CVDs, CVD ingredients, mechanisms of actions (MoAs), and CVD-associated 736 AEs.
FAIRsharing.a55z32	Minimal Information about a high throughput SEQuencing Experiment	MINSEQE	MINSEQE describes the Minimum Information about a high-throughput nucleotide SEQuencing Experiment that is needed to enable the unambiguous interpretation and facilitate reproduction of the results of the experiment. By analogy to the MIAME guidelines for microarray experiments, adherence to the MINSEQE guidelines will improve integration of multiple experiments across different modalities, thereby maximising the value of high-throughput research.
FAIRsharing.a5e1jd	Enzyme Mechanism Ontology	EMO	The "Enzyme Mechanism Ontology " describes the components of an enzyme and its reaction mechanism including the roles that the components play in the reaction mechanism.
FAIRsharing.a5zy4g	Database of Arabidopsis Transcription Factors	DATF	The Database of Arabidopsis Transcription Factors (DATF) collects all Arabidopsis transcription factors (totally 1922 Loci; 2290 Gene Models) and classifies them into 64 families.The Version 2 of DATF was updated at July 2006. It is based on the Arabidopsis Sequence of TAIR, predicted Nuclear Location Signals, UniGene information, as well as links to literature reference.
FAIRsharing.a6b4fc	Analyze 7.5 File Format	Analyze	Analyze 7.5 can store voxel-based volumes and consists of two files: One file with the actual data in a binary format with the filename extension .img and another file (header with filename extension .hdr) with information about the data such as voxel size and number of voxel in each dimension.
FAIRsharing.a7p1zt	NIDA Data Share	NIDA	The NIDA Data Share web site is an electronic environment that allows data from completed clinical trials to be distributed to investigators and the public in order to promote new research, encourage further analyses, and disseminate information to the community. Secondary analyses produced from data sharing multiply the scientific contribution of the original research.
FAIRsharing.a833sq	Oak Ridge National Laboratory Distributed Active Archive Center for Biogeochemical Dynamics	ORNL DAAC for Biogeochemical Dynamics	The Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC) mission is to assemble, distribute, and provide data services for a comprehensive archive of terrestrial biogeochemistry and ecological dynamics observations and models to facilitate research, education, and decision-making in support of NASA’s Earth science. The ORNL DAAC is one of the Earth Observing System Data and Information System (EOSDIS) Distributed Active Archive Centers (DAACs) that archive and distribute earth science data, managed by NASA's Earth Science Data and Information System Project (ESDIS), as part of the Earth Science Data Systems (ESDS) Program.
FAIRsharing.a8diI4	The UCD1+ controlled vocabulary	UCD1+ Vocabulary	This document describes the list of controlled terms used to build the Unified Content Descriptors, Version 1+ (UCD1+). The document describing the UCD1+ can be found at the URL: http://www.ivoa.net/Documents/latest/UCD.html. This document reviews the structure of the UCD1+ and presents the current vocabulary. This version contains new UCD words for the planetary data community as proposed in the Technical Note by Cecconi et al. The suggested list of line labels under the em.line branch is not included. A general solution is currently under study to deal with lists of element instances such spectral lines, chemical elements, elementary particles, etc. using either utypes or a vocabulary.
FAIRsharing.a8vtrn	Lippincott Williams & Wilkins - Circulation - Research Guidelines	None	Circulation, a journal created in association with the American Heart Association and the American Stroke Association, has provided a policy describing their guidelines for data deposition and publication. In accordance with the Clinical Trial Registration Statement from the International Committee of Medical Journal Editors (ICMJE), all clinical trials in Circulation must be registered in a public trials registry at or before the onset of participant enrollment. There are also a number of other required or suggested data standards and databases listed in this policy.
FAIRsharing.Aa2ryS	Shanoir	Shanoir	Shanoir (Sharing NeurOImaging Resources) is an open source neuroinformatics platform designed to share, archive, search and visualize neuroimaging data. It provides a user-friendly secure web access and offers an intuitive workflow to facilitate the collecting and retrieving of neuroimaging data from multiple sources and a wizzard to make the completion of metadata easy. Shanoir comes along many features such as anonymization of data, support for multi-centres clinical studies on subjects or group of subjects.
FAIRsharing.ab8f4d	Nordic Control Allele Frequency and Genotype Database	None	Database of SNP genotype control data. The current version of NordicDB pools together high-density genome-wide SNP information from ∼5000 controls originating from Finnish, Swedish and Danish studies and shows country-specific allele frequencies for SNP markers.
FAIRsharing.abbexa	DES-TOMATO	DES-TOMATO	DES-TOMATO is a topic-specific literature exploration system developed to allow the exploration of information related to tomato. The information provided in DES-TOMATO is obtained through the text-mining of available scientific literature, namely full-length articles in PubMed Central and titles and abstracts in PubMed.
FAIRsharing.abwvhp	NCBI Trace Archive	None	The Trace Archives includes the following archives: The Sequence Read Archive (SRA) stores raw sequence data from "next-generation" sequencing technologies including 454, IonTorrent, Illumina, SOLiD, Helicos and Complete Genomics. In addition to raw sequence data, SRA now stores alignment information in the form of read placements on a reference sequence. The Trace Archive serves as the repository of sequencing data from gel/capillary platforms such as Applied Biosystems ABI 3730®. The Trace Assembly Archive stores pairwise alignment and multiple alignment of sequencing reads, linking basic trace data with finished genomic sequence as found in GenBank.
FAIRsharing.abxd9x	Teleost Anatomy Ontology	TAO	TAO is a multi-species ontology for teleost fishes that was initialized with terms from the Zebrafish Anatomical Ontology (ZFA). The development of the TAO focused on the skeletal system because it varies significantly across fishes, is well-preserved in fossil specimens, and it is often the focus of morphologically-based evolutionary studies in ichthyology. Note that TAO is a deprecated ontology and has been superceded by Uberon.
FAIRsharing.ac329k	The Autism Chromosome Rearrangement Database	None	The Autism Chromosome Rearrangement Database is a collection of hand curated breakpoints and other genomic features, related to autism, taken from publicly available literature, databases and unpublished data.
FAIRsharing.ACANXg	Research Vocabularies Australia	RVA	Research Vocabularies Australia (RVA) helps users access and reuse vocabularies for all areas of research. Some vocabularies are hosted by the Australian Research Data Commons (ARDC) and can be accessed directly through the RVA, otherwise links are provided to the vocabulary owner’s web page. Research Vocabularies Australia also allows you to create and/or publish a vocabulary as well as integrate an existing vocabulary into your own system.
FAIRsharing.AcUAbT	Simulation Data Model	SimDM	The Simulation Data Model describes numerical computer simulations of astrophysical systems. The primary goal of this standard is to support discovery of simulations by describing those aspects of them that scientists might wish to query on, i.e. it is a model for meta-data describing simulations. This document does not propose a protocol for using this model. IVOA protocols are being developed and are supposed to use the model, either in its original form or in a form derived from the model proposed here, but more suited to the particular protocol. The SimDM has been developed in the IVOA Theory Interest Group with assistance of representatives of relevant working groups, in particular DM and Semantics.
FAIRsharing.ad1zae	Ensembl Protists	Ensembl Protists	Ensembl Protists stores protist genomes of interest, covering those involved in disease and of scientific interest. This includes genomes such as Plasmodium falciparum, Dictyostelium discoideum, Phytophthora infestans and Leishmania major. A majority of these genomes are taken from the databases of the International Nucleotide Sequence Database Collaboration (the European Nucleotide Archive at EMBL-EBI, GenBank at the NCBI, and the DNA Database of Japan); in some cases, the annotation has been taken directly from the websites of the data generators
FAIRsharing.ad8nyj	De Nederlandse Gedragscode Wetenschapsbeoefening	None	General policy (or code of honour) for scientific practice in the Netherlands, which includes principles for reproducability and verifiability.
FAIRsharing.ae5rv	Semantic reference model for making rare disease resources linkable	None	A subset of ontology classes and properties for connecting rare disease data in the context of creating FAIR rare disease data 'at the source'. The aim is to facilitate data annotation at the source in order to enable questions and analysis across rare disease resources (e.g. biobanks, registries, molecular data). I.e. the model is not meant as a new conceptualization. Ontology files: 1. rdc-core: the minimal set of classes and properties to map to the data in the sources of the platform. RD core represents little more that the lowest level types for the identifiers of the sources of the Rare Disease Connect platform. 2. rdc-meta: the minimal semantic model, defined as much as possible using existing ontologies (OBIB, etc.). 3. rdc-meta-extended: this model includes the subclasses and properties of the entities that were imported from source ontologies, i.e. when you use the ‘move’ function of protege, rather than just copy the URI. 4. rdc-thesaurus: mappings to ‘concepts’. A SKOS-based thesaurus represents a ‘light-weight’ ontology. This allows us to define in simple terms the relations between similar or equal terms in different terminologies. 5. rdc-mapping: mapping between models, for instance between the SKOS concepts and RD-core and RD-meta. 6. rdc-example-instances: example instances (‘individuals’) to show the model at instance level. The instances, especially the IDs relate to actual data in data sources. Their datatype properties link to data.
FAIRsharing.ae8hpt	Descriptive Ontology for Linguistic and Cognitive Engineering	DOLCE	DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational ontology developed as part of the WonderWeb Foundational Ontologies Library (WFOL).  The development of this library has been guided by the need of a reliable set of foundational ontologies that can serve as 1) astarting point for building other ontologies, 2) a reference point for easy and rigorous comparisons among different ontological approaches, and 3) a rigorous basis for analyzing, harmonizing and integrating existing ontologies and metadata standards (by manually mapping them into some general module(s) in the library). DOLCE is the first module of WFOL and it is not a candidate for a universal standard ontology. Rather, it is intended as a starting point for comparing and elucidating the relationships with the other modules of the library, and also for clarifying the hidden assumptions underlying existing ontologies or linguistic resources such as WordNet.  As reflected by its acronym, DOLCE has a clear cognitive bias, in the sense that it aims at capturing the ontological categories underlying natural language and human commonsense. DOLCE is an ontology that focuses on particulars in the sense that its domain of discourse is restricted to them. The project is complete, though the ontology remains available for use.
FAIRsharing.ae956n	Integrated Microbial Genomes And Microbiomes	IMG/M	The Integrated Microbial Genomes (IMG/M) aims to support the annotation, analysis and distribution of microbial genome and microbiome datasets sequenced at DOE's Joint Genome Institute (JGI). It also serves as a community resource for analysis and annotation of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates genome and metagenome datasets provided by IMG users with a set of publicly available genome and metagenome datasets. IMG/M is also open to scientists worldwide for the annotation, analysis, and distribution of their own genome and microbiome datasets, as long as they agree with the IMG/M data release policy and follow the metadata requirements for integrating data into IMG/M.
FAIRsharing.aebs2d	Gates Open Research Data Guidelines	None	This is a non-exhaustive list of databases, standards, and policies that have been approved for use in and by a Gates Open Research article. Data must be hosted by a stable and recognised open repository. Using such a repository ensures that your dataset continues to be available in a useable form in the future.
FAIRsharing.aef0q5	Cognitive Atlas	CogAt	The Cognitive Atlas is a collaborative knowledge building project that aims to develop a knowledge base (or ontology) that characterizes the state of current thought in cognitive science. Cognitive neuroscience aims to map mental processes onto brain function, which begs the question of what "mental processes" exist and how they relate to the tasks that are used to manipulate and measure them.
FAIRsharing.aej2a8	Galen Ontology	GALEN	A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic.
FAIRsharing.aeury4	University of Oxford Policy on the Management of Data Supporting Research Outputs	None	The University of Oxford Policy on the Management of Data Supporting Research Outputs aims to establish the measures needed to facilitate the appropriate curation and management of data within the University of Oxford, to secure its longevity and its potential to be shared. This policy is intended to help promote good practice around research data, with the particular aim that it is: stored securely and preserved in order to ensure its continuing utility; appropriately identifiable, retrievable, and available when needed; an accurate, complete, reliable and coherent representation of the materials collected; kept in a manner that is compliant with legal obligations; and able to be made available to others in line with appropriate ethical, data sharing and open access principles.
FAIRsharing.af3j4h	Research Domain Criteria Database	RDoCdb	RDoCdb is an informatics platform for the sharing of human subjects data related to Mental Health research. This database may be used to plan for data submission, share your data, query data that is already shared, or to share your results related to a publication or finding. RDoCdb is is a part of the NIMH Data Archive (NDA), powered by the National Database for Autism Research (NDAR) infrastructure.
FAIRsharing.aFsZlL	Civic Learning, Engagement, and Action Data Sharing	C	CivicLEADS	Civic Learning, Engagement, and Action Data Sharing (CivicLEADS) provides an infrastructure for researchers to share and access high-quality datasets which can be used to study civic education and involvement. CivicLEADS is Funded by a grant from the Spencer Foundation and part of ICPSR's Education and Child Care Data Archives at the University of Michigan.
FAIRsharing.aftff2	The Gene Index Project	TIGR_TGI	The goal of The Gene Index Project is to use the available EST and gene sequences, along with the reference genomes wherever available, to provide an inventory of likely genes and their variants and to annotate these with information regarding the functional roles played by these genes and their products.
FAIRsharing.agwgmc	CloudFlame	CloudFlame	CloudFlame is a cloud-based cyberinfrastructure for managing combustion research and enabling collaboration. The infrastructure includes both software and hardware components, and is freely offered to anyone with a valid professional or educational affiliation. This website provides a front-end for data search tools, web-based numerical simulations, and discussion forums. We have marked this resource as having an Uncertain status because we have been unable to confirm certain metadata with the resource contact. If you have any information about the current status of this project, please get in touch.
FAIRsharing.ah5f2f	Minimal Information for Neural ElectroMagnetic Ontologies	MINEMO	Minimal Information for Neural ElectroMagnetic Ontologies (MINEMO; formerly "MIEME" or "MINIerp") is the minimal set of experiment meta-data that is required for datasets that are used in the NEMO project. MINEMO extends MINI (Minimal Information for Neuroscience Investigations)to the ERP domain. Checklist terms are explicated in NEMO, a formal ontology that is designed to support ERP data sharing and integration. MINEMO is also linked to an ERP database and web application (the NEMO portal). Users upload their data and enter MINEMO information through the portal. FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource.
FAIRsharing.aIe9SA	Allosteric Mutation Analysis and Polymorphism of Signaling database	AlloMAPS	The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and allosteric effects of mutations. In addition to energetics of allosteric signaling between known functional and regulatory sites, allosteric modulation caused by the binding to these sites, by SNPs, and by mutations designated by the user can be explored. Allosteric Signaling Maps (ASMs), which are produced via the exhaustive computational scanning for stabilizing and destabilizing mutations and for the modulation range caused by the sequence position are available for each protein/protein chain in the database.
FAIRsharing.ajdxzx	CDISC Operational Data Model	CDISC ODM	ODM is a vendor-neutral, platform-independent format (based on XML) for exchanging and archiving clinical and translational research data, along with their associated metadata, administrative data, reference data, and audit information. ODM facilitates the regulatory-compliant acquisition, archival and exchange of metadata and data. It has become the language of choice for representing case report form content in many electronic data capture (EDC) tools. ​
FAIRsharing.ajpk6x	International Neuroimaging Data-Sharing Initiative	INDI	Database for open data sharing of resting-state fMRI and DTI images collected from over 50 sites around the world. These data collections now contain comprehensive phentoypic information, openly available via data usage agreements.
FAIRsharing.ak8p5g	MicroArray Gene Expression Tabular Format	MAGE-TAB	Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGE-ML by the FGED Society. However, the complexity of the MAGE-ML format has made its use impractical for laboratories lacking dedicated bioinformatics support. We propose a simple tab-delimited, spreadsheet-based format, MAGE-TAB, which will become a part of the MAGE microarray data standard and can be used for annotating and communicating microarray data in a MIAME compliant fashion. MAGE-TAB will enable laboratories without bioinformatics experience or support to manage, exchange and submit well-annotated microarray data in a standard format using a spreadsheet. The MAGE-TAB format is self-contained, and does not require an understanding of MAGE-ML or XML
FAIRsharing.amf6me	VIVO Integrated Semantic Framework Ontology	VIVO-ISF	The VIVO Integrated Semantic Framework ontology (VIVO-ISF Ontology, sometimes also known as the VIVO Ontology) represents researchers in the context of their experience, outputs, interests, accomplishments, and associated institutions. VIVO-ISF provides a set of types (classes) and relationships (properties) to represent researchers and the full context in which they work. The larger VIVO software is an open source platform for research discovery. Content in any local VIVO installation may be maintained manually, brought into VIVO in automated ways from local systems of record, such as HR, grants, course, and faculty activity databases, or from database providers such as publication aggregators and funding agencies.
FAIRsharing.amxd1s	GenoList Genome Browser	GenoList	GenoList is an integrated environment for comparative exploration of microbial genomes. The current release integrates genome data for over 700 species (Genome Reviews). The query and navigation user interface includes specialized tools for subtractive genome analysis and dynamic synteny visualization.
FAIRsharing.an0y9t	NanoMaterial Registry	Nano Registry	The Nanomaterial Registry is a central registry and growing repository of publicly-available nanomaterial data which are fully curated based upon a set of Minimal Information about Nanomaterials (MIAN). Each nanomaterial curated into the Registry provides the following information: Physico-characteristics – values, protocols, metadata; Information on the related biological and/or environmental studies; Instance of Characterization information – preparation, synthesis, and time frame leading up to the nanomaterial characterization; and  Validation back to the Data Source, such as scholarly article, manufacturer’s website. As both the original homepage (http://www.nanomaterialregistry.org/) and data browser are not functional, we have marked this record as Uncertain. Please get in touch with us if you have any information on this resource.
FAIRsharing.AN3lMf	InParanoid	InParanoid	The InParanoid database provides a user interface to orthologs inferred by the InParanoid algorithm. InParanoid release 8 is based on the 66 reference proteomes that the 'Quest for Orthologs' community has agreed on using, plus 207 additional proteomes from the UniProt complete proteomes--in total 273 species.
FAIRsharing.an4drj	Knockout Mouse Project	KOMP	Knockout mutant mice strains. The KOMP repository is a resource of mouse embryonic stem (ES) cells containing a null mutation in every gene in the mouse genome. The KOMP collection of mice, ES Cells, and vectors are now distributed through the Mutant Mouse Resource and Research Center at UC Davis.
FAIRsharing.an9ct0	BioMedBridges Diabetes Ontology	DIAB	Diabetes ontology
FAIRsharing.ANR6qz	BIOchemical PathwaY DataBase	BIOPYDB	BIOPYDB is a manually-curated database of human cell specific biochemical pathway data. The information within BIOPYDB is primarily extracted from published scientific literature and a selection of databases. The reconstructed pathways contain information about proteins, protein complexes, inorganic molecules, mutated and onco-proteins of signalling, disease and immunological pathways. Every molecule and interaction listed in the database contains at least one reference in a peer reviewed journal.
FAIRsharing.anxkvb	SpliceInfo	SpliceInfo	The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splicing silencer (ESS) and other intronic splicing motifs. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
FAIRsharing.anxqkv	e-ReColNat	e-ReColNat	The aim of e-ReColNat is to build a huge database consisting of species occurrence records through time, which will feed all kind of research and expertise in biodiversity survey, modelling global change, etc.
FAIRsharing.aoSBun	International Epidemiology Databases to Evaluate AIDS Data Exchange Standard	IeDEA DES	The IeDEA Data Exchange Standard (IeDEA DES) is a patient-centric data model designed to support data harmonization and data exchange among HIV clinics participating in the International Epidemiology Databases to Evaluate AIDS (IeDEA, iedea.org). The variables and code lists have been developed to accommodate data originating in both resource-rich and resource-limited settings. The IeDEA DES was forked with permission from the Europe-centric HICDEP HIV data model in 2012.
FAIRsharing.ap169a	Minimal Information Required In the Annotation of Models	MIRIAM	The Minimal Information Required In the Annotation of Models (MIRIAM), initiated by the BioModels.net effort, is a set of guidelines for the consistent annotation and curation of computational models in biology. It is suitable for use with any structured format for computational models.
FAIRsharing.aq20qn	NOMAD Laboratory	NOMAD LAB	The NOMAD Laboratory hosts, organizes and shares materials data. It contains ab initio electronic-structure data from density-functional theory and methods beyond. NOMAD enables the confirmatory analysis of materials data, their reuse, and repurposing. It makes scientific data citable as one can request digital objective identifiers (DOI's). NOMAD keeps scientific data for at least 10 years for free.
FAIRsharing.aqb4ne	CUBE-DB	CUBE-DB	Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera).
FAIRsharing.aqnss4	thesaurus	thesaurus	"thesaurus" is a standard that was listed on BioPortal. However, it has been subsequently removed. We have been unable to find any other record of this standard and have therefore marked it as deprecated. If you know more information about this standard, please do contact us.
FAIRsharing.arjewp	Springer Nature - Nature Publishing Group - Nature Neuroscience - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.as08v3	CareLex Controlled Vocabulary	CareLex CV	Contains controlled vocabulary terms from National Cancer Institute used to classify clinical trial electronic content (documents, images, etc). A Content model contains content classification categories (classes) and metadata properties (data properties). Data properties should be assigned to each Content Type. This model has been published as part of the new OASIS eTMF Standard, a draft specification available at: http://oasis-open.org/committees/etmf. CareLex is a non-profit organization formed to promote eClinical application and content interoperability for the life sciences and healthcare industries.
FAIRsharing.asg057	Parasite Experiment Ontology	PEO	The Parasite Experiment Ontology (PEO) models the processes, instruments, parameters, and sample details that will be used to annotate experimental results with “provenance” metadata (derivation history of results). The ontology was created to enable publication of results in journals, conferences with details of the method used to arrive at the result. Please note that the homepage is no longer active, and the ontology has not been updated in BioPortal since 2011. Until we can ascertain the current status of the ontology, we have marked this record as "Uncertain".
FAIRsharing.at6rsf	Image Attribution Framework Development Repository	IAF	The Image Attribution Framework Development Repository is a system for neuroimaging data citation and credit with a practical implementation that meets the objectives of unique identification, data use tracking, and integration with traditional credit attribution systems. This reference implementation was created which mirrors the structure of the Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) neuroimaging data repository using the XNAT platform. DOIs can be assigned upon dataset upload, meaning that project-level identifiers as well as per-image DOIs are created. Note that this reference implementation is for illustration purposes. It is expected that ultimate success of this concept will be through the implementation of these recommendations within existing data hosts, and not through this reference implementation itself.
FAIRsharing.attjm7	Cell Press - Cell - Information for Authors	None	The Information for Authors page contains a broad range of guidelines for publishing in Cell. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.av5SIs	Policy for Resource Sharing by IDG Members	None	Resources generated by IDG members may include, but are not limited to, cell lines, mouse lines, small molecules, peptides, computational algorithms, machine learning models (“AI”), instrumentation, etc.
FAIRsharing.av8nfd	Open Food Safety Model Ontology	OFSMR	This is the food-matrix ontology for the Open Food Safety Model Repository. Transferring predictive microbial models from research into real world food manufacturing or risk assessment applications is still a challenge for members of the food safety modelling community. This ontology supports the repository where existing predictive models previously published in the scientific literature were re-implemented using Predictive Modelling in Food Markup Language (PMF-ML), which is based on SBML.
FAIRsharing.av9fsp	CORA. Repositori de dades de Recerca	None	The CORA. Repositori de dades de Recerca is a repository of open, curated and FAIR data that covers all academic disciplines. CORA. Repositori de dades de Recerca is a shared service provided by participating Catalan institutions (Universities and CERCA Research Centers). The repository is managed by the CSUC and technical infrastructure is based on the Dataverse application, developed by international developers and users led by Harvard University (https://dataverse.org).
FAIRsharing.avw5q	Collaborative Computing Project for NMR	CCPN data model	The CCPN Data Model for macromolecular NMR is intended to cover all data needed for macromolecular NMR spectroscopy from the initial experimental data to the final validation. It serves for exchange of data between programs, for storage, data harvesting, and database deposition. The data model proper is an abstract description of the relevant data and their relationships - it is implemented in the modeling language UML. From this CCPN autogenerates interfaces (APIs) for various languages, format description and I/O routines, and documentation.
FAIRsharing.awgyhy	High Energy Physics Data Repository	HEPData	The Durham High Energy Physics Database (HEPData) has been built up over the past four decades as a unique open-access repository for scattering data from experimental particle physics. It currently comprises the data points from plots and tables related to several thousand publications including those from the Large Hadron Collider (LHC). HEPData is funded by a grant from the UK STFC and is based at the IPPP at Durham University.
FAIRsharing.ax1gd5	Outbreak Reports and Intervention studies Of Nosocomial infection	ORION	In order to raise the standards of research and publication, a CONSORT equivalent for these largely quasi-experimental studies has been prepared by the authors of two relevant systematic reviews undertaken for the HTA and the Cochrane Collaboration. The statement was revised following widespread consultation with learned societies, editors of journals and researchers. It consists of a 22 item checklist, and a summary table. Like CONSORT, ORION considers itself a work in progress, which requires ongoing dialogue for successful promotion and dissemination.
FAIRsharing.ay6k6e	Cell Press - Developmental Cell - Information for Authors	None	Developmental Cell launched in 2001 as a journal intended to bridge the disciplines of cell biology and developmental biology. Developmental Cell is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Developmental Cell. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.aYZb2k	IDG DNA Construct Resource Reporting Standards	None	DNA construct reporting standards for the Illuminating the Druggable Genome (IDG) consortium.
FAIRsharing.az5nfe	Oxford University Press - Journal Of The National Cancer Institute - Manuscript Preparation	OUP JNCI Policy	The Manuscript Preparation page contains a broad range of guidelines for publishing in the Journal Of The National Cancer Institute. With regards to data deposition, authors are encouraged to follow published standard reporting guidelines for the study discipline. In reporting randomized clinical trials, authors must comply with published CONSORT guidelines. Before final acceptance of any manuscript containing new nucleotide and/or amino acid sequences, the author(s) must deposit the sequence information with the appropriate public repository as described in this document. Microarray and proteomic data should be made publicly available at the time of publication in suitable repositories as described in this document.
FAIRsharing.azj141	Material Rock Igneouus	MATRROCKIGNEOUS	matrRockIgneous
FAIRsharing.b050yp	BioEmergences	BioEmergences	Webservice for 3D+time in vivo, in toto imaging data storage and annotation. Direct access to image processing workflows on EGI and local computer clusters for cell detection, shape segmentation and kinematics analysis with custom designed algorithms. Registration required.
FAIRsharing.b084yh	Online Mendelian Inheritance in Man Ontology	OMIM Ontology	OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes as well as the relationship between them, that is freely available and updated daily. The OMIM ontology contains terms used within the OMIM database.
FAIRsharing.B0d5Kn	Scholarly Link Exchange Metadata Schema	Scholix	The Scholix metadata schema was created by journal publishers, data centres, and global service providers to collect and exchange links between research data and literature. The core of Scholix data is the Link Information Package, which contains information about two objects and about the link between them. The schema contains of all the properties in a Scholix link information package with their definitions, structure and occurrence rules. Many of the properties are optional; the schema is designed to allow bulk exchange of link information with a minimum of information relevant to the link being mandatory.
FAIRsharing.b1njwg	American College of Physicians - Annals of Internal Medicine - Reproducible Research	ACP - AIM Policy	The section on Data Sharing and Reproducible Research within the larger Information for Authors policy describes the author requirements for study data. Authors should be prepared to provide original study data and statistical code if requested by the editors. The editors may request access to study data during the peer-review process and may cease consideration of a manuscript if the authors cannot or will not provide the data. These data will be treated confidentially and not shared beyond the editorial staff without specific permission from the authors. As of April 19, 2016, Annals requires authors submitting manuscripts reporting the results of a clinical trial to submit a copy of the study protocol with all dated amendments. If the manuscript is accepted for publication, the protocol will be published as a supplement to the article on Annals.org. If necessary, Annals will consider publication of protocols that redact proprietary information from introduction and background sections.
FAIRsharing.B2sbNh	FAIR Metrics - Use Qualified References	FM-I3	FM-I3 is a metric concerned with relationships within (meta)data, and between local and third-party data, and whether or not they have explicit and ‘useful’ semantic meaning. One of the reasons that HTML is not suitable for machine-readable knowledge representation is that the hyperlinks between one document and another do not explain the nature of the relationship - it is “unqualified”. For Interoperability, the relationships within and between data must be more semantically rich than “is (somehow) related to”. Numerous ontologies include richer relationships that can be used for this purpose, at various levels of domain-specificity. For example, the use of skos for terminologies (e.g. exact matches), or the use of SIO for genomics (e.g. “has phenotype” for the relationship between a variant and its phenotypic consequences). The expectation is that some of the references/relations point outwards to other resources, owned by third-parties; this is one of the requirements for 5-star linked data. Therefore linksets (in the formal sense) representing part or all of a resource must be provided. This metric applies to part I3 of the FAIR Principles.
FAIRsharing.b3c5ck	Bilingual lexicon of water related texts and data	Lexeau	This terminology is also known as the Lexique bilingue des textes et des données sur l'eau. The Lexeau project is in the research and developement stage, using existing software to test the lexicon model and user interface on specific themes of the water domain such as flooding. This resource does not have a specific homepage, and currently is only available via AgroPortal.
FAIRsharing.b403jy	Pulmonary Embolism Ontology	PE	A controlled vocabulary of PE-relevant information. Currently, only treatment information is available.
FAIRsharing.b4zdz8	Cold Spring Harbor Lab Press - Genome Research	None	Genome Research requires that data from a publication be easily available to the broader community in publicly held databases when available, and at the Genome Research Web site, and if desired at the author's Web site, when they are not. This policy document provides a list of public databases and resources serves as an introductory guide to data submission and appropriate nomenclature for authors contributing to Genome Research. However, this list should not be considered to be comprehensive. If there is an additional database or resource not listed here that would be of use to authors, please contact Genome Research via the contact email on this page.
FAIRsharing.b5ann2	Plant Genome Central	None	The list of plant sequencing projects in this page includes those that have reached the stage where active sequence determination is currently producing, or is expected to produce in the near future, GenBank accessions toward the goal of determining the sequence of that plant genome.
FAIRsharing.b5yzzf	Dependency Layered Ontology for Radiation Oncology	DLORO	Dependency Layered Ontology for Radiation Oncology
FAIRsharing.b67b3g	Cancer Research UK Policy on Data Sharing and Preservation	CRUK Data Sharing and Preservation Policy	Cancer Research UK requires that applicants applying for funding provide a data management and sharing plan as part of their application.
FAIRsharing.b6asc0	General Practice Notebook	GP Notebook	GPnotebook is a concise synopsis of the entire field of clinical medicine focused on the needs of the General Practitioner with material organised systematically to ensure rapid retrieval of information. The content of GPnotebook is based on clinical practice in the United Kingdom and provides a clinical reference for general practitioners and medical students; it may also be a useful reference resource for other health professionals. As well as being a clinical reference, GPnotebook also aims to be a tool for clinical education, clinical governance and continuing professional development.
FAIRsharing.b70tzs	ISO-15926-2_2003_entityMembership	ENTITY	Entity Membership
FAIRsharing.b7evv9	MeGO	MeGO	MeGO is dedicated to the functions of mobile genetic elements. The terms defined in MeGO are used to annotate phage and plasmid protein families in ACLAME.
FAIRsharing.b7gm54	computer network	CN	This resource is no longer available because its underlying source material is not suitable for FAIRsharing.
FAIRsharing.b8233y	Darwin Core translations	DwC_translations	The Darwin Core is meant to serve a global community. Access to the documents describing the standard in multiple languages will facilitate open access and global adoption. This resource is meant to be an index to all translations of Darwin Core documents. Anyone interested in providing translations to be hosted with the corpus of the standard should contact the Darwin Core Task Group.
FAIRsharing.b82qvn	Congenital Heart Defects Ontology	CHD	Congenital Heart Defects Ontology (CHD) is a standard that represents the ontology of CHD.
FAIRsharing.b952rv	NASA/IPAC Extragalactic Database	NED	NASA/IPAC Extragalactic Database (NED) is a comprehensive database of multiwavelength data for extragalactic objects, providing a systematic, ongoing fusion of information integrated from hundreds of large sky surveys and tens of thousands of research publications. The contents and services span the entire observed spectrum from gamma rays through radio frequencies. As new observations are published, they are cross- identified or statistically associated with previous data and integrated into a unified database to simplify queries and retrieval.
FAIRsharing.b9td4r	Image Storage Platform for Analysis Management and Mining	ISPAMM	A database system for storing Microscopy data for the KU Leuven Live Science Research group.
FAIRsharing.bb5rna	Sea scientific open data publication	Seanoe	Seanoe (SEA scieNtific Open data Edition) is a publisher of scientific data in the field of marine sciences. It is operated by Sismer within the framework of the Pôle Océan. Data published by SEANOE are available free. They can be used in accordance with the terms of the Creative Commons license selected by the author of data. Seance contributes to Open Access / Open Science movement for a free access for everyone to all scientific data financed by public funds for the benefit of research. An embargo limited to 2 years on a set of data is possible; for example to restrict access to data of a publication under scientific review. Each data set published by SEANOE has a DOI which enables it to be cited in a publication in a reliable and sustainable way. The long-term preservation of data filed in SEANOE is ensured by Ifremer infrastructure.
FAIRsharing.bbb81t	Minimum Information about a Stem Cell Experiment	MISCE	MISCE recommends the standard information required to report a stem cell experiment, covering: study and experiment design, organism characterization, specimen isolation, cell isolation, cellular reprogramming, gene editing, cellular differentiation, genomic and pluripotency stability assays, and data analysis methods, if applicable.
FAIRsharing.bbQbSW	Crossref Metadata Deposit Schema	None	The Crossref Metadata Deposit Schema is a schema designed to enforce a standardized metadata format on research content stored within Crossref. This schema supports a range of different content types and categories, including descriptive (bibliographic), administrative and structural. It follows the ISO/IEC 11179 Metadata Registry (MDR) standard, which specifies a schema for recording both the meaning and technical structure of the data for unambiguous usage by humans and computers.
FAIRsharing.bc23s	GlycoProtDB	GPDB	GlycoProtDB is a glycoprotein database providing information of Asn (N)-glycosylated proteins and their glycosylated site(s), which were constructed by employing a bottom-up strategy using actual glycopeptide sequences identified by LC/MS-based glycoproteomic technologies. The database is searchable using gene ID, gene name, and its description (protein name) as query. Each data sheet of glycproteins is based on a single amino acid sequence in Wormpep database for C.elegans and NCBI Refseq database for mouse. The sheet presents actually detected N-glycosylation site(s) which are displayed each capturing methods of glycopeptide subset, e.g., lectins Concanavalin A, wheat germ agglutinin (WGA), or HILIC (hydrophilic interaction chromatography), as well as potential N-glycosylation sites (NX[STC], X≠P). Protein sequences, which have common glycopeptide sequence(s), are linked each other.
FAIRsharing.bc3cnk	Visualizing Continuous Health Usability Test Results Dataset	None	The dataset was obtained from series of usability tests on a software tool for visualizing continuous health status of a modeled patient. The emphasis of this results are on the hFigures visualization llibrary. The software is a dashboard for visualizing the health status of a modeled virtual patient improving the health condition over a coaching program. The files are in machine-readable format saved as comma separated values. The questionnaires applied were: After Scenario Questionnaire Computer System Usability Questionnaire Nielsen’s Heuristic Evaluation The questionnaires were done using the web application by Gary Perlman available in the url: garyperlman.com/quest/ the file laboratory.csv contains the tasks and their time to completion along with the errors occurred. The tasks, software tool and research context is available in the article submitted to BMC Medical Informatics & Decision Making. The experiment included three usability experts and eleven non-expert users. The file asq.csv contains the answers to the three questions of the After Scenario Questionnaire. The file csuq.csv contains the answers to the 19 questions of the Computer System Usability Questionnaire. The file heuristics.csv contains the answers to the 10 questions of the Nielsen’s Heuristic Evaluation. This datasets are available under the MIT license.
FAIRsharing.bcdtjc	Enzyme Portal	Enzyme Portal	The Enzyme Portal is for those interested in the biology of enzymes and proteins with enzymatic activity. It integrates publicly available information about enzymes, such as small-molecule chemistry, biochemical pathways and drug compounds. It contains enzyme-related information from resources developed at the EBI, and presents it via a unified user experience. The Enzyme Portal team does not curate enzyme information and therefore is a secondary information resource or portal.
FAIRsharing.BdTOT4	Data & Policy	D&P	Data & Policy is a peer-reviewed, open access journal at the interface of data science and governance, published by Cambridge University Press. Data & Policy is a peer-reviewed, open access journal dedicated to the impact of data science on policy and governance. The journal aims to promote a new theory of policy-data interactions by publishing work that considers systems of policy and data and how they relate to each other. The journal publishes research examining the use of data for policy, and contributions that explore how data can be used in an ethical, responsible and efficient manner. Authors should make evidence and resources that underpin published findings, such as data, code, materials, and protocols, available to readers without undue barriers to access. Authors are required to include a Data Availability Statement in the manuscript that describes how readers can access the resources that support the findings.
FAIRsharing.bdv7z3	PRofils pour l'Identification Automatique du Metabolisme	PRIAM	In English, PRIAM stands for enzyme-specific profiles for metabolic pathway prediction. PRIAM is a method for automated enzyme detection in a fully sequenced genome, based on all sequences available in the ENZYME database.
FAIRsharing.be4j1m	Springer Nature - Molecular Psychiatry - Information for Authors	None	Nature Publishing Group-Molecular Psychiatry-Information for Authors describes the submission and content specification required for the publication of articles in the field of molecular psychiatry.
FAIRsharing.be9dj8	Interdisciplinary Earth Data Alliance	IEDA	IEDA systems serve as primary community data collections for global geochemistry and marine Geoscience research to support the preservation, discovery, retrieval, and analysis of a wide range of observational field and analytical data types, enabling these data to be discovered and reused by a diverse community now and in the future. IEDA provides free and open access to all data holdings.
FAIRsharing.BEKtQ3	GrapeMine	GrapeMine	GrapeMine is dedicated to grapevine data. It provides access to many kind of data types like genomic annotation data as well as SNPs, markers and phenotyping data.
FAIRsharing.bemzxg	PhysioNet	PhysioNet	The PhysioNet Resource is intended to stimulate current research and new investigations in the study of complex biomedical and physiologic signals. It offers free web access to large collections of recorded physiologic signals and related open-source software. Data includes well-characterized digital recordings of physiologic signals, time series, and related data for use by the biomedical research community. PhysioNet includes collections of cardiopulmonary, neural, and other biomedical signals from healthy subjects and patients with a variety of conditions with major public health implications, including sudden cardiac death, congestive heart failure, epilepsy, gait disorders, sleep apnea, and aging.
FAIRsharing.bey51s	Banana Anatomy Ontology	CO_125	The Banana Anatomy Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information.
FAIRsharing.bfqdc8	Generic Feature Format Version 2	GFF2	GFF2 is a supported format in GMOD, but it is now deprecated and if you have a choice you should use GFF3. Unfortunately, data is sometimes only available in GFF2 format. GFF2 has a number of shortcomings compared to GFF3. GFF2 can only represent 2 level feature hierarchies, while GFF3 can support arbitrary levels. GFF2 also does not require that column 3, the feature type, be part of the sequence ontology. It can be any string. This often led to quality control and data exchange problems. The GFF format is a flat tab-delimited file, each line of which corresponds to an annotation, or feature. Each line has nine columns.
FAIRsharing.bgm0mm	Database of Liver Expression Profile	dbLEP	With the rapid progress of the HLPP (Human Liver Proteome Project), a massive quantity of liver proteome expression profile data has been generated. To manage the valuable resource effectively and present it for researchers, a web-based database of liver proteome expression profile named dbLEP has been developed. Currently dbLEP holds two datasets of human fetal liver and HLPP French liver with approximately 17247 proteins and 36990 peptides. Other datasets, such as HLPP Chinese liver and subcellula, C57 mouse liver subcellula will be online soon. Both non-redundant proteins and all possible proteins are presented so that users could understand each dataset comprehensively. Besides the complete identification, dbLEP provides related information like mass spectrums for users to verify the confidence.
FAIRsharing.bgx54j	MaHCO	MHC	MHC, or major histocompatibility complex is a gene complex found in jawed vertebrates. The genes found on this region of the genome include several important genes which encode proteins which are responsible for presenting peptides on the cell surface for inspection by cells of the immune system. In human, such genes are called HLA (human leukocyte antigen). MaHCO contains terms necessary for describing and categorizing concepts related to MHC, in general, and for a number of model species, and also for humans.
FAIRsharing.bh0k78	Nucleic Acid Database	NDB	The Nucleic Acids Database contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids.
FAIRsharing.BIZ2Nt	American Society of Clinical Oncology (ASCO) Survey on COVID-19 in Oncology Registry	ASCO Registry	The American Society of Clinical Oncology (ASCO) Survey on COVID-19 in Oncology Registry (ASCO Registry) aims to help the cancer community learn more about the patterns of symptoms and severity of COVID-19 among patients with cancer, as well as how COVID-19 is impacting the delivery of cancer care and patient outcomes. The ASCO Registry is designed to collect both baseline and follow-up data on how the virus impacts cancer care and cancer patient outcomes during the COVID-19 pandemic and into 2021.
FAIRsharing.bj9jst	National Child Development Study 1958BC data deposition policy	NCDS Policy	The National Child Development Study (NCDS) is a continuing longitudinal study that seeks to follow the lives of all those living in Great Britain who were born in one particular week in 1958. Conducted by the Centre for Longitudinal Studies (CLS), the aim of the study is to improve understanding of the factors affecting human development over the whole lifespan. It collects information on physical and educational development, economic circumstances, employment, family life, health behaviour, wellbeing, social participation and attitudes. This policy is a DRAFT data deposition policy - to be elaborated by METADAC [This is a placeholder document, which will be replaced in due time]
FAIRsharing.bk3z3n	GBIF Spain IPT - GBIF Spain Repository	None	GBIF Spain maintains this data repository, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Able to assign DOIs to datasets, it ensures the data is disseminated in standardized format in order to facilitate wider reuse and integration of the data, for example into GBIF.org. GBIF Spain supports researchers in Spain by providing them helpdesk assistance and by hosting their data for free in this repository. It has already been used to publish/host data in scientific publications, e.g. http://dx.doi.org/10.15470/qomfu6 which is the data this Scientific Data publication is based on: http://dx.doi.org/10.1038/sdata.2016.85
FAIRsharing.bke5k	Rheumatoid Arthritis ontology	RAO	A controlled vocabulary of RA-relevant information. Currently, only treatment information is available.
FAIRsharing.bkejsq	Human Physiology Simulation Ontology	HUPSON	Large biomedical simulation initiatives, such as the Virtual Physiological Human (VPH), are substantially dependent on controlled vocabularies to facilitate the exchange of information, of data and of models. Hindering these initiatives is a lack of a comprehensive ontology that covers the essential concepts of the simulation domain. We propose a first version of a newly constructed ontology, HuPSON, as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles.
FAIRsharing.bkxpmp	Xenobiotics Metabolism Database	XMetDB	XMetDB is an open access and open source database and web interface for the submission and retrieval of experimental metabolite data for drugs and other xenobiotics. It will also feature an open API for access to the database.
FAIRsharing.bLMnnR	ISRIC Soil Data Hub	None	The ISRIC Soil Data Hub is a central location for searching and downloading soil data layers from around the world. It provides access to a wide range of geo-referenced soil data, including soil profiles and individual soil attributes (WoSIS) as well as derived soil property maps for the world (SoilGrids250m). Many datasets are the result of international collaboration. ISRIC is the World Data Centre for Soils, a regular member of the International Science Council (ISC) World Data System.
FAIRsharing.blUMRx	Genome-Wide Association Studies Catalog	GWAS Catalog	The Genome-Wide Association Studies (GWAS) Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide. Within the Catalog, all eligible GWA studies are identified by literature search and assessed by curators, who then extract the reported trait, significant SNP-trait associations, and sample metadata. The Catalog also publishes a GWAS diagram of SNP-trait associations, mapped onto the human genome by chromosomal location and displayed on the human karyotype. Since 2010, delivery and development of the Catalog has been a collaborative project between the EMBL-EBI and NHGRI.
FAIRsharing.bmz5ap	Qualitative Data Repository	QDR	The Qualitative Data Repository (QDR) is a dedicated archive for storing and sharing digital data (and accompanying documentation) generated or collected through qualitative and multi-method research in the social sciences. QDR provides search tools to facilitate the discovery of data, and also serves as a portal to material beyond its own holdings, with links to U.S. and international archives. The repository’s initial emphasis is on political science. Four beliefs underpin the repository's mission: data that can be shared and reused should be; evidence-based claims should be made transparently; teaching is enriched by the use of well-documented data; and rigorous social science requires common understandings of its research methods.
FAIRsharing.bn6jba	Poxvirus Bioinformatics Resource Center	None	Poxvirus Bioinformatics Resource Center has been established to provide specialized web-based resources to the scientific community studying poxviruses. This resource is no longer being maintained. For tools and data supporting virus genomics, especially related to poxviruses and other large DNA viruses, please visit the Viral Bioinformatics site maintained by our collaborator, Chris Upton: http://virology.ca For information on virus taxonomy, please visit the ICTV web site at http://www.ictvonline.org/ For updated sequence data and analytical tools, please visit http://www.viprbrc.org
FAIRsharing.BnLUyq	Plant Genome Integrative Explorer	PlantGenIE	The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualising and analysing genomics and transcriptomics data for different plant species. Currently, it includes dedicated web portals for enabling in-depth exploration of Poplar, Eucalyptus Norway spruce, and Arabidopsis and few more plant species. The PlantGenIE platform is based on the GenIE-Sys ( Genome Integrative Explorer System).
FAIRsharing.bnx9cf	Molecular Connections Cell Line Ontology	MCCL	The Molecular Connections Cell Line Ontology models primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. The ontology covers all cell lines from sources such ATCC, DSMZ, ECACC, ICLC. This ontology has been developed as an extension of the sub class “cell line cell” which is a part of the major class “experimentally modified cell” of the Cell type [CL] ontology that already existed in OBO foundry. Disease ontology with which the cell line relates to has been exported from “Human Disease” [DOID] ontology and the organ/tissue details relate to the “Foundational model of anatomy” [FMA] ontology. There appears to be no official homepage.
FAIRsharing.BOvdiu	Simple Spectral Lines Data Model	SSLDM	The Simple Spectral Lines Data Model (SSLDM) standard presents a Data Model to describe Spectral Line Transitions in the context of the Simple Line Access Protocol defined by the IVOA. The main objective of the model is to integrate with and support the Simple Line Access Protocol, with which it forms a compact unit. This integration allows seamless access to Spectral Line Transitions available worldwide in the VO context. This model does not provide a complete description of Atomic and Molecular Physics, which scope is outside of this document. In the astrophysical sense, a line is considered as the result of a transition between two energy levels. Under the basis of this assumption, a whole set of objects and attributes have been derived to define properly the necessary information to describe lines appearing in astrophysical contexts. The document has been written taking into account available information from many different Line data providers.
FAIRsharing.bp5hpt	Phenomics of yeast Mutants	PhenoM	PhenoM (Phenomics of yeast Mutants) stores, retrieves, visualises and data mines the quantitative single-cell measurements extracted from micrographs of temperature-sensitive mutant cells. PhenoM allows users to rapidly search and retrieve raw images and their quantified morphological data for genes of interest. The database also provides several data-mining tools, including a PhenoBlast module for phenotypic comparison between mutant strains and a Gene Ontology module for functional enrichment analysis of gene sets showing similar morphological alterations.
FAIRsharing.bpkzqp	Immunology Database and Analysis Portal	ImmPort	The Immunology Database and Analysis Portal (ImmPort) data repository was created for the exploration of clinical and basic research data on immunology and associated findings. ImmPort intends to promote effective data sharing across the basic, clinical and translational research communities. It collects data both from clinical and mechanistic studies on human subjects and from immunology studies on model organisms. The ImmPort ecosystem consists of four components: private data, shared data, data analysis, and resources-for data archiving, dissemination, analyses, and reuse.
FAIRsharing.bQSMT2	IVOA Photometry Data Model	PhotDM	The Photometry Data Model (PhotDM) standard describes photometry filters, photometric systems, magnitude systems, zero points and its interrelation with the other IVOA data models through a simple data model. Particular attention is given necessarily to optical photometry where specifications of magnitude systems and photometric zero points are required to convert photometric measurements into physical flux density units.
FAIRsharing.brrt0b	Datasets2Tools	D2T	Biomedical data repositories such as the Gene Expression Omnibus (GEO) enable the search and discovery of relevant biomedical digital data objects. Similarly, resources such as OMICtools index bioinformatics tools that can extract knowledge from these digital data objects. However, systematic access to pre-generated “canned" analyses applied by bioinformatics tools to biomedical digital data objects is currently not available. Datasets2Tools is a repository indexing 31,473 canned bioinformatics analyses applied to 6,431 datasets. The Datasets2Tools repository also contains the indexing of 4,901 published bioinformatics software tools, and all the analyzed datasets. Datasets2Tools enables users to rapidly find datasets, tools, and canned analyses through an intuitive web interface, a Google Chrome extension, and an API. Furthermore, Datasets2Tools provides a platform for contributing canned analyses, datasets, and tools, as well as evaluating these digital objects according to their compliance with the findable, accessible, interoperable, and reusable (FAIR) principles. By incorporating community engagement, Datasets2Tools promotes sharing of digital resources to stimulate the extraction of knowledge from biomedical research data.
FAIRsharing.BrubDI	Mechanism and Catalytic Site Atlas	M-CSA	M-CSA is a database of enzyme reaction mechanisms. It provides annotation on the protein, catalytic residues, cofactors, and the reaction mechanisms of hundreds of enzymes. There are two kinds of entries in M-CSA: 'Detailed mechanism' entries are more complete and show the individual chemical steps of the mechanism as schemes with electron flow arrows; and 'Catalytic Site' entries annotate the catalytic residues necessary for the reaction, but do not show the mechanism.
FAIRsharing.bsAeqi	COVID-HEP Registry	None	COVID-HEP Registry is a universal and collaborative registry project to collect data on patients with liver disease at any stage or liver transplants who develop laboratory-confirmed COVID-19. We are pleased to encourage reports from worldwide. However, if reporting from the Americas or China/Japan/Korea, please see our collaborators at: SECURE-cirrhosis.
FAIRsharing.bsawmk	TropGENE DB	TropGENE DB	TropGENE DB is a database that manages genetic and genomic information about tropical crops studied by Cirad. The database is organised into crop specific modules.
FAIRsharing.bst9e4	Traditional Medicine Constitution Value Set	TM-CONST	The value set for the Constitution property of the International Classification of Traditional Medicine (ICTM). The World Health Organization, in consultation with a large group of stakeholders in the areas of Traditional Medicine or Complementary and Alternative Medicine and Health Information Systems, has developed a collaborative project plan to produce an international standard terminology and classification system for Traditional Medicine. This resource is part of an effort to produce an international standard for information on TM that is ready for electronic health records and that will serve as a standard for scientific comparability and communication.
FAIRsharing.bw1e90	Human Ageing Genomic Resources	HAGR	The Human Ageing Genomic Resources (HAGR) is a collection of databases and tools for the biology and genetics of ageing. HAGR features several databases with high-quality, manually-curated data: 1) GenAge, a database of genes associated with ageing in humans and model organisms; 2) AnAge, an extensive collection of longevity records and complementary traits for over 4,000 vertebrate species; and 3) GenDR, a database containing both gene mutations that interfere with dietary restriction-mediated lifespan extension and consistent gene expression changes induced by dietary restriction.
FAIRsharing.bwctv	European Hepatitis C Virus database	euHCVdb	The euHCVdb is mainly oriented towards protein sequence, structure and function analyses and structural biology of Hepatitis C Virus.
FAIRsharing.bwswdf	Mutual Folding Induced by Binding Database	MFIB	Mutual Folding Induced by Binding (MFIB) is a repository of protein complexes for which the folding of each constituent protein chain is coupled to the interaction forming the complex. This means that while the complexes are stable enough to have their structures solved by conventional structure determination methods (such as X-ray or NMR), the proteins or protein regions involved in the interaction do not have a stable structure in their free monomeric form (i.e. they are intrinsically disordered/unstructured).
FAIRsharing.by3p8p	brainlife	brainlife	Brainlife is an open, online platform that provides seamless access to cloud computing infrastructure and brain data and data derivatives. It aims to address challenges to neuroscience open sharing and reproducibility by providing integrative mechanisms for publishing data, and algorithms while embedding them with computing resources to impact multiple scientific communities. Brainlife is intended for neuroscientists, computer scientists, statisticians, and engineers interested in brain data to use the data or develop and publish their analysis methods.
FAIRsharing.bya6z	Super-Enhancer Archive	SEA	SEA (Super-Enhancer Archive) is a web-based comprehensive resource focusing on the collection, storage and online analysis of super-enhancers. It focuses on integrating super-enhancers in multiple species and annotating their potential roles in the regulation of cell identity gene expression. To facilitate data extraction, SEA supports multiple search options, including species, genome location, gene name, cell type/tissue, and super-enhancer name.
FAIRsharing.BZKHEH	Legume Information System	LIS	The Legume Information System (LIS) is a collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species.
FAIRsharing.c0bvcy	Semantic Sensor Network Ontology	SSN	The Semantic Sensor Network (SSN) ontology is an ontology for describing sensors and their observations, the involved procedures, the studied features of interest, the samples used to do so, and the observed properties, as well as actuators. SSN follows a horizontal and vertical modularization architecture by including a lightweight but self-contained core ontology called SOSA (Sensor, Observation, Sample, and Actuator) for its elementary classes and properties. With their different scope and different degrees of axiomatization, SSN and SOSA are able to support a wide range of applications and use cases, including satellite imagery, large-scale scientific monitoring, industrial and household infrastructures, social sensing, citizen science, observation-driven ontology engineering, and the Web of Things.
FAIRsharing.c12tyk	mzTab	mzTab	The aim of the format is to present the results of a proteomics experiment in a computationally accessible overview. The aim is not to provide the detailed evidence for these results, or allow recreating the process which led to the results. Both of these functions are established through links to more detailed representations in other formats, in particular mzIdentML and mzQuantML. mzTab is meant to be a light-weight, tab-delimited file format for proteomics data. The target audience for this format are primarily researchers outside of proteomics. It should be easy to parse and only contain the minimal information required to evaluate the results of a proteomics experiment. One of the goals of this file format is that it, for example, should be possible for a biologist to open such a file in Excel and still be able to "see" the data. This format should also become a way to disseminate proteomics results through protocols such as DAS.
FAIRsharing.c1bjep	HOmo sapiens transcription factor COmprehensive MOdel COllection	HOCOMOCO	HOmo sapiens COmprehensive MOdel COllection (HOCOMOCO) v10 provides transcription factor (TF) binding models for 601 human and 396 mouse TFs. In addition to basic mononucleotide position weight matrices (PWMs), HOCOMOCO provides a set of dinucleotide position weight matrices based on ChIP-Seq data. All the models were produced by the ChIPMunk motif discovery tool. Models are manually curated with assigning model quality ratings based upon benchmark studies or inherited from HOCOMOCO v9. ChIP-Seq data for motif discovery was extracted from GTRD database of BioUML platform, that also provides an interface for motif finding (sequence scanning) with HOCOMOCO models. Other sequences of TF binding DNA regions were collected from existing databases and other public data. An appropriate TFBS model was selected for each TF, with similar models selected for related TFs. All TFBS models and initial binding segments data used for motif discovery were mapped to UniPROT IDs. TF coding genes are linked with GeneCards entries. DNA binding domains are linked with TF class database.
FAIRsharing.c1q6jd	DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks	DistiLD	The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) results by making it easy to query and visualize disease-associated SNPs and genes in their chromosomal context.
FAIRsharing.c1rep3	PolyDoms	PolyDoms	An integrated database of human coding single nucleotide polymorphisms (SNPs) and their annotations.
FAIRsharing.c2c96p	LINCS Pilot Phase 1 Metadata Standards: Cell Lines	LINCS 1: Cell Lines	The LINCS Pilot Phase 1 metadata standards annotate reagents outside the context of the experiments in which they were used. The underlying theme among all cell types is their association with a tissue or organ from which the cells were derived.
FAIRsharing.c2wkqx	Natural Collections Descriptions	NCD	Natural Collections Description (NCD) (A data standard for exchanging data describing natural history collections) is a proposed data standard for describing collections of natural history materials at the collection level; one NCD record describes one entire collection. The NCD standard covers all types of natural history collections, such as specimens, original artwork, archives, observations, library materials, datasets, photographs or mixed collections such as those that result from expeditions and voyages of discovery. NCD is a draft standard that was submitted for ratification in 2008. Personnel changes in several critical roles caused the ratification process to stall, so the specification has remained as a draft since. The in 2016 reestablished Collection Descriptions Interest Group has decided to discontinue the development of NCD in favour of a new TDWG Collections Description metadata standard.
FAIRsharing.c2yb5w	Metadata Authority Description Schema in RDF	MADS/RDF	MADS/RDF is a knowledge organization system (KOS) designed for use with controlled values for names (personal, corporate, geographic, etc.), thesauri, taxonomies, subject heading systems, and other controlled value lists. It is closely related to SKOS, the Simple Knowledge Organization System and a widely supported and adopted RDF vocabulary. MADS/RDF has been fully mapped to SKOS. It is presented as an OWL ontology. While SKOS is very broad in its application, MADS/RDF is designed specifically to support authority data as used by and needed in the LIS community and its technology systems. For example, MADS/RDF provides a means to record data from the Machine Readable Cataloging (MARC) Authorities format in RDF for use in semantic applications and Linked Data projects.
FAIRsharing.c34wtj	Endocrine Pancreas Consortium Database	EPConDB	EPConDB is a resource of the Beta Cell Biology Consortium which displays information about genes expressed in cells of the pancreas and their transcriptional regulation.
FAIRsharing.c3kchy	SpodoBase	SpodoBase	SpodoBase is an integrated database for the genomics of the Lepidoptera Spodoptera frugiperda. It is a publicly available structured database with insect pest sequences which will allow identification of a number of genes and comprehensive cloning of gene families of interest for the scientific community.
FAIRsharing.c3v6e6	IPD-NHKIR - Non-Human Killer-cell Immunoglobulin-like Receptors	IPD-NHKIR	The IPD-NHKIR database provides a centralised repository for non-human KIR (NHKIR) sequences. Killer-cell Immunoglobulin-like Receptors (KIR) have been shown to be highly polymorphic at the allelic and haplotypic level. KIRs are members of the immunoglobulin superfamily (IgSF) formerly called Killer-cell Inhibitory Receptors. They are composed of two or three Ig-domains, a transmembrane region and cytoplasmic tail which can in turn be short (activatory) or long (inhibitory). The Leukocyte Receptor Complex (LRC) which encodes KIR genes has been shown to be polymorphic, polygenic and complex like the MHC.
FAIRsharing.c5qpnc	Non-Pharmacological Interventions	NPI	Terminologies of Non-Pharmacological Interventions
FAIRsharing.c6JaLH	IVOA Credential Delegation Protocol	None	The credential delegation protocol allows a client program to delegate a user's credentials to a service such that that service may make requests of other services in the name of that user. The protocol defines a REST service that works alongside other IVO services to enable such a delegation in a secure manner. In addition to defining the specifics of the service protocol, this document describes how a delegation service is registered in an IVOA registry along with the services it supports. The specification also explains how one can determine from a service registration that it requires the use of a supporting delegation service.
FAIRsharing.c7c4h1	Visual Database for Organelle Genome	VDOG	VDOG, Visual Database for Organelle Genome is an innovative database of the genome information in the organelles. Most of the data in VDOG are originally extracted from GeneBank, re-organized and represented.
FAIRsharing.c8dxsv	ReMap	ReMap	ReMap is an integrative analysis of transcription factor ChIP-seq experiments publicly available, merged with the Encode dataset. The resource is an extensive regulatory catalogue of transcription factor binding sites from transcription factors (TFs). The data is available to browse or download either for a given transcription factor or for the entire dataset.
FAIRsharing.c9fakh	Big Pattern Space Layout	bigPsl	The bigPsl format stores alignments between two sequences just as PSL files do; however, bigPsl files are compressed and indexed as bigBeds. PSL files are converted to bigPsl files using the program bedToBigBed, run with the -as option to pull in a special autoSql (.as) file that defines the fields of the bigPsl.
FAIRsharing.c9v5sz	Pathway Terminology System	PTS	Pathwas terminology systems integrates biological Events and various Pathway types.
FAIRsharing.ca63ce	Fern Ontology	FO	Fern Ontology (FO) is a controlled and structured vocabulary of fern specific anatomy and lifecycle.
FAIRsharing.cakne1	NIDM-Results	NIDM-Results	NIDM-Results is a data model that enable sharing neuroimaging results using a common descriptive standard across neuroimaging software. NIDM-Results focuses on mass-univariate studies and is mostly targeted at fMRI but is also suitable for anatomical MRI (with Voxel-Based Morphometry), and Positron Emission Tomography (PET).  NIDM-Results packs provide a lightweight solution to share maps generated by neuroimaging studies along with their metadata. Export to NIDM-Results is natively implemented in SPM, NeuroVault and CBRAIN and a Python library is ready for integration in FSL. NeuroVault additionally can import NIDM-Results packs.
FAIRsharing.caOJPM	In-service Aircraft for a Global Observing System Data Portal	IAGOS Data Portal	The IAGOS Data Portal provides observational data and added-value products produced by the European Research Infrastructure IAGOS. Datasets can be discovered and downloaded through the portal. Data and metadata follow the standards for Atmospheric community.
FAIRsharing.caqb1r	UK Biotechnology and Biological Sciences Research Council Data Sharing Policy	BBSRC Data Sharing Policy	BBSRC Data sharing policy. The BBSRC data sharing policy updates include: a recommendation from their Data Sharing Policy Monitoring Group, a consultation with their Tools and Resources Strategy Panel, a consultation with their Integrative and Systems Biology Panel, rebranding of UKMPC to Europe PMC (December 2012), and a change of terminology from 'data sharing statement' to 'data management plan'. This Data Sharing Policy was updated (to version 1.2) in March 2016. It now includes systems biology (specifically the models arising from systems approaches) as one of 3 areas where there is a particularly strong scientific case for sharing. The requirement for a Data Management Plan for all research proposals submitted to BBSRC remains unchanged.
FAIRsharing.cb05hf	Aphid Genomics Database	AphidBase	The Aphid Genome Database's aim is to improve the current pea aphid genome assembly and annotation, and to provide new aphid genome sequences as well as tools for analysis of these genomes.
FAIRsharing.CbLHss	National Institute of Mental Health Connectome Coordination Facility Repository	NIMH CCF	The Connectome Coordination Facility (CCF) processes and distributes public research data for a series of neuroimaging studies that focus on connections within the human brain. These are known as Human Connectome Projects (HCP). The CCF currently supports 19 NIH-funded human connectome studies (see menus above). All data releases from CCF HCP studies are being made available on the NIMH Data Archive.
FAIRsharing.cbz72b	BOOK	BO	This resource has been listed as inactive as up-to-date information on it can no longer be found (it was originally listed on BioPortal but the record there has subsequently been deleted).
FAIRsharing.cc3QN9	World Data Centre for Space Weather	SWS - WDC	The World Data Centre section provides software and data catalogue information and data produced by the Bureau of Meteorology - Space Weather Services (SWS) over the past decades. Thousands of gigabytes of Ionospheric, Magnetometer, Spectrograph, Cosmic Ray data and Solar images are available for download. These areas are continually growing, with the addition of new data types, downloadable tools and data from new locations.
FAIRsharing.ccwcz6	NCI Center for Strategic Scientific Initiatives Data Coordinating Center	CSSI DCC	The CSSI Data Coordinating Center (DCC) provides the greater Cancer Research and Biomedical Research communities access to the data from a myriad of projects that have been supported by CSSI -- serving as a permanent repository for these and related investigations. The DCC allows users in the community to download the metadata and data from these investigations in the ISA-TAB format. The DCC also allows any user to upload and download the metadata and data associated with investigations. The DCC has a graphical user interface allowing users to easily visualize the content within the data archives
FAIRsharing.CD2Px7	Minimum Information Required for a Glycomics Experiment - Liquid Chromatography Analysis	MIRAGE LC Guidelines	Thes LC guidelines are intended to improve the reporting of liquid chromatography (LC) glycan data. The MIRAGE-LC module covers all aspects of instrument setup and modality of data handling and manipulation cross-linked with other MIRAGE recommentations. The following parameters should be included in the report: - equipment used, including the specification of column details & characteristics, mobile phase, properties of the chromatographic run, pre- and post run processes, column outputs - fractions, data annotation, - exoglycosidase treatment
FAIRsharing.ce8nsj	EuroPhenome	EuroPhenome	The EuroPhenome project provides access to raw and annotated mouse phenotyping data generated from primary pipelines such as EMPReSSlim and secondary procedures from specialist centres. Mutants of interest can be identified by searching the gene or the predicted phenotype.
FAIRsharing.cea9zc	Statistical Data and Metadata eXchange	SDMX	Statistical Data and Metadata eXchange (SDMX) is an initiative to foster standards for the exchange of statistical information. The SDMX initiative sets standards to facilitate the exchange of statistical data and metadata using modern information technology. Several versions of the technical specifications have been released since 2004. SDMX has also been published as an ISO International Standard (IS 17369).
FAIRsharing.cF5x1V	Infectious Diseases Data Observatory	IDDO	The Infectious Diseases Data Observatory (IDDO) assembles clinical, laboratory and epidemiological data on a collaborative platform to be shared with the research and humanitarian communities. The data are analysed to generate reliable evidence and innovative resources that enable research-driven responses to the major challenges of emerging and neglected infections. Data is organized into research themes, with both submitters storing and requesters asking for data via the central IDDO platform. Certain data (listed in data inventories or available via various portals) is available publicly, while the rest must be applied and permission received for.
FAIRsharing.cfcd4r	Neurophysiology Data Translation Format	NDF	The purpose of the Neurophysiology Data Translation Format (NDF) is to provide a means of sharing neurophysiology experimental data and derived data between services and tools developed within the CARMEN project. This document specifies the NDF. The specification supports the types of data that are currently used by members of the CARMEN consortium and provides a capability to support future data types. It is capable of accommodating external data file formats as well as metadata such as user defined experimental descriptions and the history (provenance) of derived data.
FAIRsharing.cfhbvn	Observ-Tab	Observ-Tab	Observ-Tab is the tabular exchange format for Observ-OM. Observ-OM is a model to capture 'any' phenotype observation lead by ​EU-GEN2PHEN. Its purpose is to store individual and summary level observations in a uniform way to enable harmonization and interoperability of phenotypic and genotypic data across human genetics, model organisms and biobanks.
FAIRsharing.CFLgLo	Chickspress	Chickspress	Chickspress is a gene expression database for chicken tissues. Chickspress incorporates both NCBI and Ensembl gene models and links these gene sets with experimental gene expression data and QTL information. By linking gene models from both NCBI and Ensembl gene prediction pipelines, researchers can compare gene models from each of these prediction workflows to available experimental data. We use Chickspress data to show the differences between these gene annotation pipelines. Chickspress also provides rapid search, visualization and download capacity for chicken gene sets based upon tissue type, developmental stage and experiment type. Chickspress includes a core set of Red Jungle Fowl RNA and peptide data collected across multiple tissues from both male and female birds and public expression data sets.
FAIRsharing.cfzz0h	Variant Call Format	VCF	Variant Call Format (VCF) is a text file format (most likely stored in a compressed manner). It contains meta-information lines, a header line, and then data lines each containing information about a position in the genome.
FAIRsharing.cg2j1y	TheWellcome Trust Sanger Institute Data Sharing Policy and Guidelines	None	The Wellcome Trust Sanger Institute developed a set of principles that form the basis for data sharing at and with the Institute. Guidelines for implementing the policy are also provided (in an associated document).
FAIRsharing.cga8gf	Venom Ontology	CU-VO	An ontology of venoms and venom-related compounds, designed to facilitate the discovery of novel venom-derived therapeutics.
FAIRsharing.chmyvk	BLAST-like Alignment Tool Format	BLAT Format	BLAT is a multiple algorithms developed for the analysis and comparison of biological sequences such as DNA, RNA and proteins.
FAIRsharing.cHo2bh	Citrusgreening.org	Citrusgreening	Huanglongbing (HLB) is a tritrophic disease complex involving citrus host trees, the Asian citrus psyllid (ACP) insect and a phloem restricted, bacterial pathogen Candidatus Liberibacter asiaticus (CLas). HLB is considered to be the most devastating of all citrus diseases, and there is currently no adequate control strategy. Citrusgreening.org is a database for host, vector and pathogen involved in citrus greening disease.
FAIRsharing.CjHLQw	Marine Data Archive	MDA	Scientific data are unique and need to be prevented from being lost. For this reason VLIZ developed the Marine Data Archive: a secure, online system where researchers can archive their data files in a well-documented manner. The MDA holds data from a wide range of international, European, and Flemish projects. It is free for anyone to use: to archive and manage their data, as a personal, project, or institutional archive, and as an open repository for data publication. Data of any type -- raw, processed, structured, data products, documents, images, etc -- can be archived in the MDA. Data in the MDA are made public by linking them to the Integrated Marine Information System, or to any other catalogue.
FAIRsharing.cjk54e	Minimotif Miner 3.0	MnM	A database of short functional motifs involved in posttranslational modifications, binding to other proteins, nucleic acids, or small molecules.
FAIRsharing.cjyac2	CDISC Clinical Trial Registry XML	CDISC CTR-XML	CTR-XML lets technology vendors implement tools that support a "write once, use many times" solution based on a single XML file that holds the information needed to generate submissions for multiple clinical trials for clinical trial registry submissions primarily to the World Health Organization (WHO), European Medicines Agency (EMA) EudraCT Registry and United States ClinicalTrials.gov.
FAIRsharing.cjzx96	Genetic Testing Ontology	GTO	The Genetic Test Ontology (GTO) was created with the aim of filling the gap between the large volume of available genetic tests and insufficient usage of these genetic tests. The GTO was built on top of a meta-ontology by populating specific genetic testing data. Literature data from SemMedDB has been extracted and integrated into the GTO to provide scientific evidence.
FAIRsharing.ckd4rf	Alzheimer's Disease Ontology	ADO	The Alzheimer's Disease Ontology (ADO) is an ontology representing relevant knowledge on Alzheimer’s disease. ADO was developed with the purpose of containing information relevant to four main biological views—preclinical, clinical, etiological, and molecular/cellular mechanisms—and contains synonyms and references.
FAIRsharing.Ckg0bl	NERC Vocabulary Server	NVS	The NERC Vocabulary Server provides access to standardised lists of terms and taxonomies related to a wide range of concepts which are used to facilitate data markup, interoperability and discovery in the marine and associated earth science domains. Some of these vocabularies are totally managed by BODC, others are managed by BODC on behalf of other organisations, while some are owned and, when relevant, managed by external governance authorities.
FAIRsharing.ckg5a2	Minimal Metagenome Sequence Analysis Standard	MINIMESS	A proposed set of minimal standard analyses necessary for proper interpretation of meta-omic data and to allow comparative metagenomics and metatranscriptomics. Please note: We cannot find an up-to-date website for this resource. As such, we have marked it as Uncertain. Please contact us if you have any information on the current status of this resource.
FAIRsharing.ckjmt3	Binary sequence information Format	2bit	A .2bit file stores multiple DNA sequences (up to 4 Gb total) in a compact randomly-accessible format. The file contains masking information as well as the DNA itself. The DNA sequence is represented as two bits per pixel with associated list of regions containing N's, and masked regions.
FAIRsharing.ckrs1g	Physician Data Query	PDQ	Physician Data Query (PDQ) Terminology is part of NCI's comprehensive cancer information database, which contains expert summaries on a wide range of cancer topics, a listing of some 30,000 cancer clinical trials from around the world, a directory of genetics services professionals, the NCI Dictionary of Cancer Terms, and the NCI Drug Dictionary.
FAIRsharing.clSFul	Coronavirus and Atopic Dermatitis (AD) / Alopecia Reporting Database	SECURE-DERM	Given the interest in the emerging and evolving coronavirus (COVID-19) pandemic and the questions regarding how this will impact patients with atopic dermatitis (AD) or alopecia who are treated with or without systemic immunomodulating medication, we have created a number of secure, online, de-identified Personal Health Identifier (PHI) – free reporting registries and an anonymous patient reported survey.
FAIRsharing.cm6j6r	YEASTNET: A consensus reconstruction of yeast metabolism	YEASTNET	This is a portal to the consensus yeast metabolic network as reconstructed from the genome sequence and literature. It is a highly annotated metabolic map of Saccharomyces cerevisiae S288c that is periodically updated by a team of collaborators from various research groups.
FAIRsharing.cmw6mm	Europe PubMed Central	Europe PMC	Europe PubMed Central (Europe PMC) is an on-line database that offers free access to a large and growing collection of biomedical research literature.
FAIRsharing.cnbjkn	Single Nucleotide Polymorphism Ontology	SNPO	The SNP Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. The SNP Ontology is general enough to enable the representation of variations observed in the genome of various species.
FAIRsharing.cp0fs9	ARLEQUIN Project Format	None	Arlequin ver 3.0 is a software package integrating several basic and advanced methods for population genetics data analysis, like the computation of standard genetic diversity indices, the estimation of allele and haplotype frequencies, tests of departure from linkage equilibrium, departure from selective neutrality and demographic equilibrium, estimation or parameters from past population expansions, and thorough analyses of population subdivision under the AMOVA framework.
FAIRsharing.cq8tg2	Open Microscopy Environment - Tagged Image File Format	OME-TIFF	OME-TIFF is a standardized file format for multidimensional image data. OME-TIFF was created to maximize the respective strengths of OME-XML and TIFF. It takes advantage of the metadata defined in OME-XML while retaining the pixels in multi-page TIFF format for compatibility with many more applications.
FAIRsharing.cr410r	Soybean Knowledge Base	SoyKB	Soybean Knowledge Base (SoyKB), is a comprehensive all-inclusive web resource developed for soybean translational genomics and molecular breeding. SoyKB stores information about genes/proteins, miRNAs/sRNAs, metabolites, SNPs, plant introduction (PI lines) and traits. It handles the management and integration of soybean genomics and multi-omics data along with gene function annotations, biological pathway and trait information. It has many useful tools including gene family search, multiple gene/metabolite analysis, motif analysis tool, protein 3D structure viewer and data download and upload capacity. It has a user-friendly web interface together with genome browser and pathway viewer, which displays data in an intuitive manner to the soybean researchers, breeders and consumers. The QTLs, SNP, GWAS and traits information is seamlessly integrated in our newly developed suite of tools for the In Silico Breeding Program. It allows integration and extraction of the data in a tabular format as well as graphical visualization in our in-house Chromosome Visualizer. It also supports integration and visualization of Genotype by Sequencing (GBS) data for molecular breeding and phenotypic inferences. In addition, SoyKB now has capacity for incorporation of DNA methylation data and fast neutron mutation datasets. It is also linked seamlessly with P3DB for phosphorylation data. We have also incorporated suite of tools for differential expression analysis for microarray, transcriptomics RNA-seq, proteomics and metabolomics datasets. It includes access to gene lists, Venn diagrams, Volcano plots, functional annotations and pathway analysis. SoyKB is now powered by the iPlant Cyber-Infrastructure. The website is hosted on the iPlant’s advanced computing infrastructure established to leverage the data analysis capabilities.
FAIRsharing.crjxwd	National Sleep Research Resource	NSRR	The National Sleep Research Resource (NSRR) offers free web access to large collections of de-identified physiological signals and clinical data elements collected in well-characterized research cohorts and clinical trials. Using the tools provided, the researcher can search across thousands of data elements, identify those data of most relevance for given needs, explore the statistical distributions of each, and download the data as CSV files. Data include demographic, physiological, clinical, and other data types collected by each study. Physiologic signals from overnight polysomnograms (sleep studies) are available by downloading European Data Format (EDF) files. The researcher can load summary measures of standardly scored sleep data. Specific scored annotations can be accessed by downloading XML files and can be viewed offline using the EDF Viewer.
FAIRsharing.crq91b	Nurse Surgical	SURGICAL	This is an ontology of a surgical nurse's process domain
FAIRsharing.csbxzs	The Diatom EST Database	None	Diatoms are photosynthetic unicellular eukaryotes that play an essential role in marine ecosystems. On a global scale, they generate around one fifth of the oxygen we breathe. On this web site we present searchable databases of diatom ESTs (expressed sequence tags) that can be used to explore diatom biology.
FAIRsharing.csr989	Met Office Hadley Centre Observations Dataset	HadCRUT4	HadCRUT4 is a gridded dataset of global historical surface temperature anomalies relative to a 1961-1990 reference period. Data are available for each month since January 1850, on a 5 degree grid. The dataset is a collaborative product of the Met Office Hadley Centre and the Climatic Research Unit at the University of East Anglia.
FAIRsharing.ct3xa3	Plant Structure Development Stage	PO PSDS	A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the Plant Ontology (PO).
FAIRsharing.ct66a3	PROCOGNATE	PROCOGNATE	PROCOGNATE is a database of cognate ligands for the domains of enzyme structures in CATH, SCOP and Pfam. The database contains an assignment of PDB ligands to the domains of structures as classified by the CATH, SCOP and Pfam databases. Cognate ligands have been identified using data from the ENZYME and KEGG databases and compared to the PDB ligand using graph matching to assess chemical similarity. Cognate ligands from the known reactions in ENZYME and KEGG for a particular enzyme are then assigned to enzymes structures which have EC numbers.
FAIRsharing.ctdss6	VertNet	VertNet	VertNet is a NSF-funded collaborative project that makes biodiversity data free and available on the web. VertNet is a tool designed to help people discover, capture, and publish biodiversity data. It is also the core of a collaboration between hundreds of biocollections that contribute biodiversity data and work together to improve it. VertNet is an engine for training current and future professionals to use and build upon best practices in data quality, curation, research, and data publishing.
FAIRsharing.ctqJoR	Inist Periodic Table of the Elements Trilingual Thesaurus	None	This trilingual thesaurus (French, English, Spanish) deals with the 118 chemical elements of the periodic table recognized by the IUPAC. It is aligned with ChEBI, wikidata, wikipedia, DBpedia.
FAIRsharing.cUG0cV	DBpedia	DBpedia	DBpedia is a crowd-sourced community effort to extract structured content from the information created in various Wikimedia projects. This structured information resembles an open knowledge graph (OKG).
FAIRsharing.cuyPH9	FAIR Metrics -  Meets Community Standards	FM-R1.3	FM-R1.3 is a metric concerned with certification, from a recognized body, of the resource meeting community standards. Various communities have recognized that maximizing the usability of their data requires them to adopt a set of guidelines for metadata (often in the form of “minimal information about…” models). Non-compliance with these standards will often render a dataset ‘reuseless’ because critical information about its context or provenance is missing. However, adherence to community standards does more than just improve reusability of the data. The software used by the community for analysis and visualization often depends on the (meta)data having certain fields; thus, non-compliance with standards may result in the data being unreadable by its associated tools. As such, data should be (individually) certified as being compliant, likely through some automated process (e.g. submitting the data to the community’s online validation service). A certification saying that the resource is compliant must be provided to fulfil this metric. This metric applies to part R1.3 of the FAIR Principles.
FAIRsharing.cwf4py	Synthetic Biology Open Language	SBOL	The Synthetic Biology Open Language (SBOL) is a standard used for the in silico representation of genetic designs. SBOL is designed to allow synthetic biologists and genetic engineers to electronically exchange designs, send and receive genetic designs to and from biofabrication centres, facilitate storage of genetic designs in repositories, and embed genetic designs in publications.
FAIRsharing.cwn40y	Sequence-Structural Templates of Single-member Superfamilies	SSToSS	SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and overlap of sequence similarity and structural parameters like, solvent inaccessibility, secondary structural content, hydrogen bonding and spatial packing of the residues among the protein of single member superfamilies.
FAIRsharing.cyv30a	Terminological and Ontological Knowledge Resources Ontology	TOK	An Ontology describing resources with different formats. This Ontology can be used to annotate and describe terminological / ontological knowledge resources.
FAIRsharing.d1cs3q	BenthGenome	BenthGenome	Nicotiana benthamiana originates from the remote regions of northern Australia. It is used extensively in laboratories around the world for many types of research including metabolic engineering, plant-microbe interactions, RNAi, vaccine production and functional genomics. This site aims to provide easy access to our latest genome and transcriptome assemblies of both laboratory and wild strains of Nicotiana benthamiana.
FAIRsharing.D1OMbH	Hierarchical Progressive Survey	HiPS	The HiPS format is a hierarchical scheme for the description, storage and access of sky survey data. The system is based on hierarchical tiling of sky regions at finer and finer spatial resolution which facilitates a progressive view of a survey, and supports multi-resolution zooming and panning. HiPS uses the HEALPix tessellation of the sky as the basis for the scheme and is implemented as a simple file structure with a direct indexing scheme that leads to practical implementations. HiPS is designed specifically for astronomical data in that it takes the astrometric and photometric properties of the original data into account, and emphasis is placed on ease of use without the need for special servers or database systems.
FAIRsharing.d1zzym	Ethnicity Ontology	EO	The Ethnicity Ontology (EO) has been developed by extending BFO to have a common reference for ethnicity concepts for semantic integration of datasets. It attempts to utilise iterated proxy markers for ethnicity such language spoken and interpreter requirements in order to support health care research studies.
FAIRsharing.d21jc4	Integrated Digitized Biocollections	iDigBio	iDigBio is the US national resource for digitized information about vouchered natural history collections within the context established by the NIBA community strategic plan and is supported through funds from the NSF's ADBC (Advancing Digitization of Biodiversity Collections) program. Through ADBC, data and images for millions of biological specimens are being made available in electronic format for the research community, government agencies, students, educators, and the general public.
FAIRsharing.d33rx4	ChannelsDB	ChannelsDB	ChannelsDB is a comprehensive and regularly updated resource of channels, pores and tunnels found in biomacromolecules deposited in the Protein Data Bank.
FAIRsharing.d3bm3v	Database of fuzzy protein complexes	FuzDB	FuzDB compiles experimentally observed fuzzy protein complexes, where intrinsic disorder (ID) is maintained upon interacting with a partner (protein, nucleic acid or small molecule) and directly impacts biological function. Entries in the database have both (i) structural evidence demonstrating the structural multiplicity or dynamic disorder of the ID region(s) in the partner bound form of the protein and (ii) in vitro or in vivo biological evidence that indicates the significance of the fuzzy region(s) in the formation, function or regulation of the assembly. Unlike the other intrinsically disordered or unfolded protein databases, FuzDB focuses on ID regions within a biological context, including higher-order assemblies and presents a detailed analysis of the structural and functional data.
FAIRsharing.d404th	CiteAb	CiteAb	CiteAb is the largest citation-ranked antibody search engine and provides a simple way to find antibodies that work. We use the number of citations as a transparent method to rank antibodies. Powerful filters allow a user to further hone a search based on application, species reactivity, clonality and clone.
FAIRsharing.d4q4g2	Chicken Variation Database	ChickVD	The chicken Variation Database (ChickVD) is an integrated information system for storage, retrieval, visualization and analysis of chicken variation data.
FAIRsharing.d50fb5	Encyclopedia of Hepatocellular Carcinome Genes Online II	EHCO II	The Encyclopedia of Hepatocellular Carcinoma genes Online, dubbed EHCO, was built to systematically collect, organize and compare the pileup of unsorted HCC-related studies by using natural language processing and softbots.
FAIRsharing.d50st0	Ontology of Alternative Medicine, French	OntoMA	Common concepts for communication between traditional medicine and western medicine. (In French)
FAIRsharing.d5BjMU	MusaBase	MusaBase	MusaBase is a breeding database designed for advanced breeding methods in banana breeding. It focuses on bananas that are important food crops in Africa, such as Mchare and Matooke bananas. Data in MusaBase comes mainly from breeding programs in Uganda (NARO Kawanda, IITA Sendusu) as well as Tanzania (IITA Arusha, newly located at Nelson Mandela University).
FAIRsharing.D5iouq	Osteoarthritis Initiative	OAI	The Osteoarthritis Initiative (OAI) is a multi-center, ten-year observational study of men and women to improve the understanding of prevention and treatment of knee osteoarthritis, one of the most common causes of disability in adults. The OAI is a permanent archive of the clinical data, patient reported outcomes, biospecimen analyses, quantitative image analyses, radiographs (X-Rays) and magnetic resonance images (MRIs) acquired during this study. While querying and browsing data is publicly available, all subject-level data is available behind a login.
FAIRsharing.d5vqn0	Computational Neuroscience Ontology	CNO	CNO is a controlled vocabulary of terms used in Computational Neurosciences to describe models of the nervous system. This first release of CNO is an alpha version and should be further aligned with other ontologies accessible on Bioportal and should be made compliant with the OBO foundry recommendations. It is unclear of the current status of this resource. Please get in touch with us if you have further information.
FAIRsharing.d62cjk	Bilingual Ontology of Alzheimer's Disease and Related Diseases	ONTOAD	OntoAD is a bilingual (English-French) domain ontology for modeling knowledge about Alzheimer's Disease and Related Syndromes.
FAIRsharing.d6Pe1f	ESS-DIVE: Environmental Systems Science Data Infrastructure for a Virtual Ecosystem	ESS-DIVE	The U.S. Department of Energy’s (DOE) Environmental Systems Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) is a data repository for Earth and environmental science data. ESS-DIVE is funded by the Data Management program within the Climate and Environmental Science Division under the DOE’s Office of Biological and Environmental Research program (BER), and is maintained by the Lawrence Berkeley National Laboratory. ESS-DIVE archives and publicly shares data obtained from observational, experimental, and modeling research that is funded by the DOE’s Office of Science under its Subsurface Biogeochemical Research (SBR) and Terrestrial Ecosystem Science (TES) programs within the Environmental Systems Science (ESS) activity. The mission of ESS-DIVE is to preserve, expand access to, and improve usability of critical data generated through DOE-sponsored research of terrestrial and subsurface ecosystems in support of the DOE’s efforts to address some of society’s most pressing energy and environmental challenges.
FAIRsharing.d6xz90	Structual and functional MRI data	MAFIL	MRI data for brain and mind research incl. simultaneous recording of EEG and electrophysiology. This resource has restricted access.
FAIRsharing.D6Xzzg	Taylor and Francis Data Policy	None	Taylor & Francis publish in all areas of the Humanities, Social Sciences, Behavioural Sciences, Science, Technology and Medicine sectors. Taylor & Francis Group publishes more than 2,500 journals and over 5,000 new books each year, with a books backlist in excess of 120,000 specialist titles. We are providers of quality information and knowledge that enable our customers to perform their jobs efficiently, enhance their education, and help contribute to the advancement of their chosen market sectors. This data policy covers all 2,500 Taylor & Francis
FAIRsharing.d7jrv2	Catalog of Fishes Genus Database	CASGEN	The Catalog of Fishes is the authoritative reference for taxonomic fish names, featuring a searchable on-line database.
FAIRsharing.d8a14w	Early Pregnancy Ontology	EPO	The early pregnancy ontology contains the concepts to describe ectopic pregnancy ultrasound images, organized into several subsumption hierarchies for types of ectopic pregnancies and the signs, anatomical structures and technical elements of imaging associated with ectopic pregnancy. Version 1.1 was used for ultrasound image annotations (Dhombres et al. Developing a knowledge base to support the annotation of ultrasound images of ectopic pregnancy. J Biomed Semantics, 2017)
FAIRsharing.d8bfx4	Bitter Compounds Database	BitterDB	BitterDB is a free and searchable database of bitter compounds. Compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste re- ceptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness.
FAIRsharing.d8f1x9	Research Network and Patient Registry Inventory Ontology	RNPRIO	Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries
FAIRsharing.d8fvz	Elsevier - Lancet Oncology - Information for Authors	None	The Information for Authors page contains a broad range of guidelines for publishing in Lancet Oncology. With regards to data deposition, novel gene sequences should be deposited in a public database (GenBank, EMBL, or DDBJ), and the accession number provided. Authors of microarray papers should include in their submission the information recommended by the MIAME guidelines. Authors should also submit their experimental details to one of the publicly available databases: ArrayExpress or GEO.
FAIRsharing.d8j0eb	Database of Rice Transcription Factors	DRTF	DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA-binding domains for each TF family.
FAIRsharing.da0bnz	APA Statistical Cluster	APASTATISTICAL	This resource is no longer available because its underlying source material is not suitable for FAIRsharing.
FAIRsharing.da6cny	ExplorEnz	ExplorEnz	The Enzyme Database was developed as a new way to access the data of the IUBMB Enzyme Nomenclature List. The data, which are stored in a MySQL database, preserve the formatting of chemical names according to IUPAC standards.
FAIRsharing.daXv6l	Astronomical Data Query Language	ADQL	The Astronomical Data Query Language (ADQL) is the language used by the IVOA to represent astronomy queries posted to VO services. The IVOA has developed several standardized protocols to access astronomical data, e.g., Simple Image Access (SIA) protocol and Simple Spectral Access (SSA) protocol for image and spectral data respectively. These protocols might be satisfied using a single table query. However, different VO services have different needs in terms of query complexity and ADQL arises in this context. The ADQL specification makes no distinction between core and advanced or extended functionalities. Hence ADQL has been built according to a single Backus Naur Form (BNF) based language definition. Any service making use of ADQL would then define the level of compliancy to the language. This would allow the notion of core and extension to be service-driven and it would decouple the language from the service specifications. ADQL is based on the Structured Query Language (SQL), especially on SQL 92 1 2 3. . The VO has a number of tabular data sets and many of them are stored in relational databases, making SQL a convenient access means. A subset of the SQL grammar has been extended to support queries that are specific to astronomy. Similarly to SQL, the ADQL language definition is not semantically safe by design and therefore this specification defines syntactical correctness only. Type safety has been achieved as far as it can be done in SQL.
FAIRsharing.DbFnKV	Radiology Gamuts Ontology	RGO	The Radiology Gamuts Ontology (RGO) is a knowledge resource for radiology diagnosis. RGO hosts more than 2,000 differential-diagnosis listings for imaging findings in all body systems. One can view all of the causes of an finding, then click on one of the diagnoses to view all of the findings that it causes.
FAIRsharing.dbsEaD	Centre for Environmental Data Analysis Archive	CEDA Archive	The CEDA Archive operates the atmospheric and earth observation data centre functions on behalf of NERC for the UK atmospheric science and earth observation communities. It covers climate, composition, observations and NWP data as well as various earth observation datasets, including airborne and satellite data and imagery.
FAIRsharing.dbsfqf	Yeast Phenotypes	YPO	Features of Saccharomyces cerevisiae cells, cultures, or colonies that can be detected, observed, measured, or monitored.
FAIRsharing.dc0WgQ	Coronavirus and Psoriasis Reporting Registry	None	Surveillance Epidemiology of Coronavirus Under Research Exclusion (SECURE-Psoriasis) is an international, pediatric and adult registry to monitor and report on outcomes of COVID-19 occurring in psoriasis patients.
FAIRsharing.dcsw6j	Common Terminology Criteria for Adverse Events	CTCAE	A coding system for reporting adverse events that occur in the course of cancer therapy. It was derived from the Common Toxicity Criteria (CTC) v2.0 and is maintained by the Cancer Therapy Evaluation Program (CTEP) at the National Cancer Institution (NCI).
FAIRsharing.dd4j8j	Ebola and Hemorrhagic Fever Virus Database	HFV Database	The Ebola and Hemorrhagic Fever Virus Database stems from the Hemorrhagic Fever Viruses (HFV) Database Project founded by Dr. Carla Kuiken in 2009 at the Los Alamos National Laboratory (LANL). The HFV Database was modeled on the Los Alamos HIV Database, led by Dr. Bette Korber, and translated much of its tools, infrastructure and philosophy from HIV to HFV.
FAIRsharing.ddmatg	Ontology of Drug Neuropathy Adverse Events	ODNAE	The Ontology of Drug Neuropathy Adverse Events (ODNAE) is an extension of OAE which serves as a knowledge base comprising drug components, chemical entities of active drug ingredients, drug mechanisms, and drug-inducing neuropathy AEs. ODNAE is a platform for building a drug-induced neuropathy knowledge base and for analyzing the underlying mechanisms of drug-induced neuropathy. The ODNAE-based methods used in this study can also be extended to the representation and study of other categories of adverse events.
FAIRsharing.DDotIl	Bicocca Open Archive Research Data	BOARD	BOARD (Bicocca Open Archive Research Data) is the institutional data repository of the University of Milano-Bicocca. BOARD is an open, free-to-use research data repository, which enables members of University of Milano-Bicocca to make their research data publicly available. By depositing their research data in BOARD researchers can make their research data citable, share their data privately or publicly, ensure long-term storage for their data, keep access to all versions and link their article to their data.
FAIRsharing.denvnv	DataverseNL	DataverseNL	DataverseNL provides online storage, sharing and registration of research data, during the research period and after its completion. DataverseNL is a shared service provided by participating institutions and DANS. DataverseNL uses the Dataverse software developed by Harvard University, which is used worldwide.
FAIRsharing.DfMGZW	FAIR Maturity Indicator Gen2-MI-A1.1	None	The FAIR Maturity Indicator Gen2-MI-A1.1 measures if the resolution protocol is universally implementable with an open protocol. Protocols that are closed source or that have royalties associated with them could prevent users from being able to obtain the resource.
FAIRsharing.dg76vs	Synthetic Biology Open Language Visual	SBOL Visual	Synthetic Biology Open Language Visual (SBOL Visual) is an open-source graphical notation that uses schematic “glyphs” to specify genetic parts, devices, modules, and systems.
FAIRsharing.dgh9j9	The Drug-Drug Interactions Ontology	DINTO	DINTO is an OWL ontology that systematically organizes all drug-drug interaction (DDI) related information. Drug-drug interactions (DDIs) form a significant risk group for adverse effects associated with pharmaceutical treatment. These interactions are often reported in the literature, however, they are sparsely represented in machine-readable resources, such as online databases, thesauri or ontologies. DINTO is an ontology that describes and categorizes DDIs and all the possible mechanisms that can lead to them (including both pharmacodynamic and pharmacokinetic DDI mechanisms).
FAIRsharing.dh32pc	Target Pathogen	Target Pathogen	The Target-Pathogen database is a bioinformatic approach to prioritize drug targets in pathogens. Available genomic data for pathogens has created new opportunities for drug discovery and development, including new species, resistant and multiresistant ones. However, this data must be cohesively integrated to be fully exploited and be easy to interrogate. Target-Pathogen has been designed and developed as an online resource to allow genome wide based data consolidation from diverse sources focusing on structural druggability, essentiality and metabolic role of proteins. By allowing the integration and weighting of this information, this bioinformatic tool aims to facilitate the identification and prioritization of candidate drug targets for pathogens. With the structurome and drugome information Target-Pathogen is a unique resource to analyze whole genomes of relevants pathogens.
FAIRsharing.dIDAzV	The Royal Society - Data sharing and mining	None	The Royal Society policy on data sharing describes the conditions for data associated with articles published by Royal Society journals. To allow others to verify and build on the work published in Royal Society journals, it is a condition of publication that authors make available the data, code and research materials supporting the results in the article. The policy also lists a selection of recommended data and code repositories. 
FAIRsharing.djyk2c	MoonProt	MoonProt	MoonProt Database is a manually curated, searchable, internet-based resource with information about the over 200 proteins that have been experimentally verified to be moonlighting proteins. Moonlighting proteins comprise a class of multifunctional proteins in which a single polypeptide chain performs multiple biochemical functions that are not due to gene fusions, multiple RNA splice variants or pleiotropic effects. The availability of this organized information provides a more complete picture of what is currently known about moonlighting proteins. The database will also aid researchers in other fields, including determining the functions of genes identified in genome sequencing projects, interpreting data from proteomics projects and annotating protein sequence and structural databases. In addition, information about the structures and functions of moonlighting proteins can be helpful in understanding how novel protein functional sites evolved on an ancient protein scaffold, which can also help in the design of proteins with novel functions.
FAIRsharing.dkbt9j	Carbohydrate Structure Database	CSDB	The Carbohydrate Structure Database (CSDB) contains manually curated natural carbohydrate structures, taxonomy, bibliography, NMR data and more. The Bacterial (BCSDB) and Plant&Fungal (PFCSDB) databases were merged in 2015, becoming the CSDB, to improve the quality of content-dependent services, such as taxon clustering and NMR simulation.
FAIRsharing.dkKf7I	Simple Application Messaging Protocol	SAMP	SAMP is a messaging protocol that enables astronomy software tools to interoperate and communicate. IVOA members have recognised that building a monolithic tool that attempts to fulfil all the requirements of all users is impractical, and it is a better use of our limited resources to enable individual tools to work together better. One element of this is defining common file formats for the exchange of data between different applications. Another important component is a messaging system that enables the applications to share data and take advantage of each other's functionality. SAMP supports communication between applications on the desktop and in web browsers, and is also intended to form a framework for more general messaging requirements.
FAIRsharing.dmgSOV	COVID-19 CVD Registry	None	As physicians, scientists and researchers worldwide struggle to understand the novel coronavirus (COVID-19) pandemic, the American Heart Association (AHA) is developing a novel registry to aggregate data and aid research on the disease, treatment protocols and risk factors tied to adverse cardiovascular outcomes.
FAIRsharing.dmhjcg	Quality Control Markup Language	QCML	An XML format for quality-related data of mass spectrometry and other high-throughput experiments. Quality control is increasingly recognized as a crucial aspect of mass spectrometry based proteomics. Several recent papers discuss relevant parameters for quality control and present applications to extract these from the instrumental raw data. What has been missing, however, is a standard data exchange format for reporting these performance metrics. We therefore developed the qcML format, an XML-based standard that follows the design principles of the related mzML, mzIdentML, mzQuantML, and TraML standards from the HUPO-PSI (Proteomics Standards Initiative). In addition to the XML format, we also provide tools for the calculation of a wide range of quality metrics as well as a database format and interconversion tools, so that existing LIMS systems can easily add relational storage of the quality control data to their existing schema. We here describe the qcML specification, along with possible use cases and an illustrative example of the subsequent analysis possibilities.
FAIRsharing.dn2c0s	Tomato Functional Genomics Database	TED	The Tomato Functional Genomics Database integrates several prior databases including the Tomato Expression Database and Tomato Metabolite Database, and the Tomato Small RNA Database.
FAIRsharing.dnE6tF	Table Access Protocol	TAP	The table access protocol (TAP) defines a service protocol for accessing general table data, including astronomical catalogs as well as general database tables. Access is provided for both database and table metadata as well as for actual table data. This version of the protocol includes support for multiple query languages, including queries specified using the Astronomical Data Query Language ADQL within an integrated interface. It also includes support for both synchronous and asynchronous queries. Special support is provided for spatially indexed queries using the spatial extensions in ADQL. A multi-position query capability permits queries against an arbitrarily large list of astronomical targets, providing a simple spatial cross-matching capability. More sophisticated distributed cross-matching capabilities are possible by orchestrating a distributed query across multiple TAP services.
FAIRsharing.dnk0f6	Generic Feature Format Version 3	GFF3	The Generic Feature Format Version 3 (GFF3) format was developed after earlier formats, although widely used, became fragmented into multiple incompatible dialects. The GFF3 format addresses the most common extensions to GFF, while preserving backward compatibility with previous formats. GFF3 files are nine-column, tab-delimited, plain text files. Literal use of tab, newline, carriage return, the percent (%) sign, and control characters must be encoded using RFC 3986 Percent-Encoding; no other characters may be encoded. Backslash and other ad-hoc escaping conventions that have been added to the GFF format are not allowed. The file contents may include any character in the set supported by the operating environment, although for portability with other systems, use of Latin-1 or Unicode are recommended.
FAIRsharing.dntrmf	Legionella pneumophila genome database	LegioList	LegioList is a database dedicated to the analysis of the genomes of Legionella pneumophila strain Paris (endemic in France), strain Lens (epidemic isolate), strain Phildelphia 1, and strain Corby. It also includes the genome of Legionella longbeachae strain NSW150.
FAIRsharing.dnxzmk	Synapse	Synapse	Synapse is a collaborative research platform that allows individuals and teams to share, track, and discuss their data and analysis in projects. Synapse allows researchers to share and describe data, analyses, and other content. Data and analyses can be stored in many types of locations, including private servers, local hard drives, or cloud storage. Synapse provides a common interface to describe these data or analyses, where they come from, and how to use them. Synapse also provides mechanisms for adding and retrieving data, analyses, and their respective descriptions.
FAIRsharing.dOFQ7p	Cyclebase	Cyclebase	Cyclebase is a database to visualize and download results from genome-wide cell-cycle-related experiments. In addition to genome annotation, Cyclebase also provides mRNA data, protein expression data, and integrated cell-cycle phenotype information from high-content screens and model organism databases.
FAIRsharing.dpgp6t	Stockholm Multiple Alignment Format	None	The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu.
FAIRsharing.dq46p7	Life Science Database Archive	LSDB Archive	If a database is inadequate in terms of its description, unclear with respect to the terms of use, or is not downloadable, it may not be fully used, cited or rightly acknowledged by the (research) communities. This is even true for databases with high-quality datasets. The Life Science Database Archive maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata (description of datasets) in a unified format, and to access and download the datasets with clear terms of use (see here for detailed descriptions). In addition, the Archive provides datasets in forms friendly to different types of users in public and private institutions, and thereby supports further contribution of each research to life science.
FAIRsharing.dq83p6	Kidney and Urinary Pathway Knowledgebase	KUPKB	The KUPKB is a collection of omics datasets that have been extracted from scientific publications and other related renal databases. The iKUP browser provides a single point of entry for you to query and browse these datasets.
FAIRsharing.drcy7r	NeuroMorpho.Org	NeuroMorpho.Org	NeuroMorpho.Org is a centrally curated inventory of 3D digitally reconstructed neurons associated with peer-reviewed publications. The goal of NeuroMorpho.Org is to provide dense coverage of available reconstruction data for the neuroscience community.
FAIRsharing.dredp4	Cell Press - Trends In Biochemical Sciences - Instructions for Authors	None	The Instructions for Authors page contains a broad range of guidelines for publishing in Trends in Biochemical Sciences. Trends in Biochemical Sciences provides succinct updates, opinions, and discussions on the most exciting current research in all aspects of biochemistry and molecular biology.
FAIRsharing.drnvw0	International Classification for Patient Safety	ICPS	The International Classification for Patient Safety (ICPS) is intended to define, harmonize and group patient safety concepts into an internationally agreed classification in a way that is conducive to learning and improving patient safety across systems. It should be noted that the conceptual framework for the ICPS is not a classification. Instead it describes a comprehensive information model for understanding the epistemology of patient safety incidents.
FAIRsharing.drtwnh	figshare	figshare	figshare is a data publishing platform that is free for all researchers. Some of figshare’s core beliefs are: academic research outputs should be as open as possible, as closed as necessary; academic research outputs should never be behind a paywall; academic research outputs should be human and machine readable/query-able; academic infrastructure should be interchangeable; academic researchers should never have to put the same information into multiple systems at the same institution; identifiers for everything; and the impact of research is independent of where it is published and what type of output it is. figshare supports embargoing and managed access, and will embargo data while undergoing peer review. Metadata in figshare is licenced under is CC0. All files and metadata can be accessed from docs.figshare.com. figshare has also partnered with DuraSpace and Chronopolis to offer further assurances that public data will be archived under the stewardship of Chronopolis. In the highly unlikely event of multiple AWS S3 failures, figshare can restore public user content from Chronopolis. figshare is supported through Institutional, Funder, and Governmental service subscriptions.
FAIRsharing.drz6sx	National Geoscience Data Centre Data Archive	NGDC	The National Geoscience Data Centre (NGDC) collects and preserves geoscientific data and information, making them available to a wide range of users and communities. NGDC is recognised as the NERC Environmental Data Centre for geoscience data.
FAIRsharing.dS2o69	Environmental Thesaurus	EnvThes	The Environmental Thesaurus is a controlled vocabulary built to aid integration of the data resulting from long term ecological research and monitoring in Europe (eLTER). It provides described and semantically well defined terms for later analysis and it serves as harmonized specification of parameters in the observation and measurement of ecosystem processes.
FAIRsharing.ds6s93	Performed Music Ontology	PMO	An extension to the Library of Congress BIBFRAME ontology for performed music, with a particular emphasis on clarifying and expanding on the modelling of works, events, and their contributors. It describes performed music, both for mainstream and archival performed music collections.
FAIRsharing.dt71b7	GeneNetwork	GeneNetwork	GeneNetwork is a group of linked data sets and tools used to study complex networks of genes, molecules, and higher order gene function and phenotypes. GeneNetwork combines more than 25 years of legacy data generated by hundreds of scientists together with sequence data (SNPs) and massive transcriptome data sets (expression or eQTL data sets). GeneNetwork was created in 1994 as The Portable Dictionary of the Mouse Genome, and became WebQTL in 2001. In 2005 it was renamed GeneNetwork.
FAIRsharing.dt7hn8	Minimum Information About a Bioactive Entity	MIABE	MIABE is intended to be used as a guideline which should be consulted prior to the publication of data describing small molecules and their interactions with one or more target molecules. It was developed by representatives of pharmaceutical companies, data resource providers and academic groups.
FAIRsharing.dtSZ38	Coronavirus and Celiac Disease Reporting Database	None	Surveillance Epidemiology of Coronavirus Under Research Exclusion (SECURE-Celiac) is an international, pediatric and adult database to monitor and report on outcomes of COVID-19 occurring in patients with celiac disease. We encourage clinicians worldwide to report ALL cases of COVID-19 in patients with celiac disease, regardless of severity (including asymptomatic patients detected through public health screening).
FAIRsharing.dvwz21	GWASdb	GWASdb	GWASdb comprises of collections of traits/diseases associated SNP (TASs) from current GWAS and their comprehensive functional annotations, as well as disease classifications.
FAIRsharing.dvxkzb	CDISC Analysis Data Model	CDISC ADaM	ADaM defines dataset and metadata standards that support the efficient generation, replication, and review of clinical trial statistical analyses, and traceability among analysis results, analysis data, and data represented in the Study Data Tabulation Model (SDTM).​
FAIRsharing.dxcjn5	Agroecology Knowledge Management	GECO	Agroecology knowledge management is an application ontology for the description and organization of knowledge to design innovative crop systems.
FAIRsharing.dxcrbg	eXtensible Graph Markup and Modeling Language	None	XGMML (eXtensible Graph Markup and Modeling Language) is an XML application based on GML which is used for graph description. XGMML uses tags to describe nodes and edges of a graph. The purpose of XGMML is to make possible the exchange of graphs between differents authoring and browsing tools for graphs. The status of this format is uncertain as the homepage is no longer accessible.
FAIRsharing.dxj07r	MGnify	MGnify	EBI Metagenomics has changed its name to MGnify to reflect a change in scope. This is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. You can freely browse all the public data in the repository.
FAIRsharing.DXjTQ8	InterMine	InterMine	InterMine was formed in 2002 at the University of Cambridge, originally as a Drosophila-dedicated resource, before expanding to become organism-agnostic, enabling a large range of organisations around the world to create their own InterMines. There are many instances of InterMine installations, relating to particular model organisms. These can be searched individually or via a cross-Mine search function.
FAIRsharing.dyfcen	Nematode.net	Nematode.net	Nematode.net is the home page of the parasitic nematode EST project at The Genome Institute at Washington University in St. Louis. The site was established in 2000 as a component of the NIH-NIAID grant "A Genomic Approach to Parasites from the Phylum Nematoda". While Nematode.net started as a project site, over the years it became a community resource dedicated to the study of parasitic nematodes.
FAIRsharing.dYSI4O	NICHD Data and Specimen Hub	NICHD DASH	The Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) Data and Specimen Hub (DASH) is a centralized resource that allows researchers to share and access de-identified data from studies funded by NICHD. DASH also serves as a portal for requesting biospecimens from selected DASH studies.
FAIRsharing.dz1xxr	Integrative and Conjugative Elements in Bacteria	ICEberg	A web-based resource for integrative and conjugative elements (ICEs) found in bacteria. It collates available data from experimental and bioinformatics analyses, and literature, about known and putative ICEs in bacteria as a PostgreSQL-based database called ICEberg. This database contains detailed information on all archived ICEs and the genes carried by each entity, including unique identifiers, species details and hyperlink-paths to other public databases, like NCBI, UniprotKB and KEGG.
FAIRsharing.dzr6rp	Database of Differentially Expressed Proteins in Human Cancer	dbDEPC	The dbDEPC is a database of differentially expressed proteins in human cancers.
FAIRsharing.e01rsf	Standard Preanalytical Code	SPREC	Standard Preanalytical Code (SPREC) identifies and records the main pre-analytical factors that may have impact on the integrity of sampled clinical fluids and solid biospecimens and their simple derivatives during collection, processing and storage. SPREC comprises 7 elements for both fluid and solid samples, defining the sample and primary container type, periods of cold and warm ischemia, and subsequent handling steps including speed and temperature of centrifugation and final storage temperature.
FAIRsharing.e1yjxM	CDISC Glossary	Glossary	CDISC Glossary seeks to harmonize definitions (including acronyms, abbreviations, and initials) used in the various standards initiatives undertaken by CDISC in clinical research. Glossary also serves the community of clinical researchers by selecting and defining terms pertaining to clinical research, particularly eClinical investigations, sponsored by the pharmaceutical industry or a federal agency.
FAIRsharing.e20vsd	DatA Tag Suite	DATS	DatA Tag Suite (DATS) is the model developed by the NIH BD2K bioCADDIE project (http://biocaddie.org) for the DataMed Data Discovery Index prototype being developed. DataMed is for data what PubMed has been for scientific literature and DATS is defined as similar to the JATS format.
FAIRsharing.e21b3k	Protein-Protein Interaction Ontology	PPIO	Record does not exist anymore: Protein-Protein Interaction Ontology. The record with identifier content https://doi.org/10.25504/FAIRsharing.e21b3k was invalid.
FAIRsharing.e2kfh0	MNI Open Research	None	This is a non-exhaustive list of databases, standards, and policies that have been approved for an MNI Open Research article.
FAIRsharing.e2zy7j	Apollo Location Code	apollo-ls	The Apollo Location Service (LS) Database issues persistent identifiers for locations for specific time intervals, including intervals that start in the past and are still open at present (i.e., the identifier should be used to refer to the location today). Temporally specific location identifiers are particularly important in epidemiology because the epidemiological record includes locations that do not presently exist, location names that have changed and location names whose political boundaries have changed.
FAIRsharing.E3Nr1d	FAIR Maturity Indicator Gen2-MI-I2A	None	The FAIR Maturity Indicator Gen2-MI-I2A measures if the (meta)data uses vocabularies that are, themselves, FAIR. For interoperability, it must be possible to identify data that can be integrated like-with-like. This requires that the data, and the provenance descriptors of the data, should (where reasonable) use vocabularies and terminologies that are, themselves, FAIR. In this loose MI, we test only if the vocabulary terms resolve (e.g. to a human-readable page). We do not test if they resolve to machine-readable information. A second Maturity Indicator (Gen2-FM-I2B) is for that stricter test.
FAIRsharing.e45arr	OntoBiotope	OntoBiotope	OntoBiotope is an ontology of microorganism habitats. Its modeling principle and its lexicon reflect the biotope classification used by biologists to describe microorganism isolation sites (e.g. GenBank, GOLD, ATCC). OntoBiotope is developed and maintained by the Meta-omics of Microbial Ecosystems (MEM) network in which 30 microbiologists from INRA (French National Institute for Agricultural Research) from all fields of applied microbiology participate. The relevance of OntoBiotope terms is evaluated through the PubMedBiotope semantic search engine. It identifies and categorizes microbial biotopes in all PubMed abstracts by applying the ToMap method (Text to Ontology Mapping) to the OntoBiotope ontology. It also indexes 3,35 millions relations between taxa and their habitats.
FAIRsharing.e4937j	Shanghai Rapeseed Database	SRD	Shanghai RAPESEED Database: a resource for functional genomics studies of seed development and fatty acid metabolism of Brassica.
FAIRsharing.e4r5nj	MalaCards	MalaCards	The MalaCards human disease database (http://www. malacards.org/) is an integrated compendium of annotated diseases mined from 68 data sources. MalaCards has a web card for each of ∼20 000 disease entries, in six global categories. It portrays a broad array of annotation topics in 15 sections, including Summaries, Symptoms, Anatomical Context, Drugs, Genetic Tests, Variations and Publications. The Aliases and Classifications section reflects an algorithm for disease name integration across often-conflicting sources, providing effective annotation consolidation. A central feature is a balanced Genes section, with scores reflecting the strength of disease-gene associations. This is accompanied by other gene-related disease information such as pathways, mouse phenotypes and GO-terms, stemming from MalaCards’ affiliation with the GeneCards Suite of databases. MalaCards’ capacity to inter-link information from complementary sources, along with its elaborate search function, relational database infrastructure and convenient data dumps, allows it to tackle its rich disease annotation landscape, and facilitates systems analyses and genome sequence interpretation. MalaCards adopts a ‘flat’ disease-card approach, but each card is mapped to popular hierarchical ontologies (e.g. International Classification of Diseases, Human Phenotype Ontology and Unified Medical Language System) and also contains information about multi-level relations among diseases, thereby providing an optimal tool for disease representation and scrutiny.
FAIRsharing.e58gcm	Chemical Component Dictionary	CCD	The Chemical Component Dictionary is an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.
FAIRsharing.e5y0j0	Clinical Knowledgebase	JAX-CKB	The Jackson Laboratory Clinical Knowledgebase (CKB) is a semi-automated/manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and clinical trials related to oncology. CKB not only contains current information on the protein effect of somatic gene variants, but also connects the variant to targeted therapies through an efficacy evidence annotation. In addition, CKB captures clinical trial patient eligibility criteria that include genomic alterations (genotype-specific). The public access version of CKB encompasses 82 commonly known driver genes. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. The web-based version of CKB is designed to interrogate the knowledgebase for specific data attributes while also enabling a robust browse like feature when the desired content is unknown.
FAIRsharing.e65js	Animal Transcription Factor Database	AnimalTFDB	AnimalTFDB is a comprehensive animal transcription factor database. The resource is classification of transcription factors from 50 genomes from species including Homo sapiens and Caenorhabditis elegans. The database also has information on co-transcription factors and chromatin remodelling factors.
FAIRsharing.e7skc6	NASA Data Portal	NASA Data Portal	NASA's publicly available data sets and resources.
FAIRsharing.e94547	UK Medical Research Council Data Sharing Policy	MRC Data Sharing Policy	The MRC expects valuable data arising from MRC-funded research to be made available to the scientific community with as few restrictions as possible so as to maximize the value of the data for research and for eventual patient and public benefit. Such data must be shared in a timely and responsible manner.
FAIRsharing.e96vf2	PTSD	PTSD	There is currently no information available on the PSTD record. The Bioportal link for this record is no longer operational.
FAIRsharing.e9sg7	Sampling Features OWL implementation	sam-lite	An OWL representation of the Sampling Features Schema described in clauses 9-11 of ISO 19156:2011 Geographic Information - Observations and Measurements.
FAIRsharing.ea3z77	Neural Motor Recovery Ontology	NeuMORE	NeuMORE aims to facilitate knowledge acquisition from existing sources via ontological techniques. It will assist PR researchers in better predicting stroke survivors' neural motor functional recovery level, and will help physical therapists customize most effective intervention therapy plans for individual stroke survivors.
FAIRsharing.eacagy	NERC British Atmospheric Data Centre Data Archive	BADC	The British Atmospheric Data Centre (BADC) is the Natural Environment Research Council's (NERC) Designated Data Centre for the Atmospheric Sciences. The role of the BADC is to assist UK atmospheric researchers to locate, access and interpret atmospheric data and to ensure the long-term integrity of atmospheric data produced by NERC projects.
FAIRsharing.eawbqb	Cell Culture Ontology	CCONT	Cell Culture Ontology (CCONT) is an ontology for the formal representation of cell lines and their corresponding culture conditions.
FAIRsharing.EBhGci	COVID-19 Global Rheumatology Alliance	None	COVID-19 Global Rheumatology Alliance aim to collect, analyze and disseminate information about COVID-19 and rheumatology to patients, physicians and other relevant groups to improve the care of patients with rheumatic disease.
FAIRsharing.ech3sa	ISO 639-2: Codes for the Representation of Names of Languages Part 2: Alpha-3 Code	ISO639-2:1998	ISO 639-2:1998 provides two sets of three-letter alphabetic codes for the representation of names of languages, one for terminology applications and the other for bibliographic applications. The code sets are the same except for twenty-five languages that have variant language codes because of the criteria used for formulating them. The language codes were devised originally for use by libraries, information services, and publishers to indicate language in the exchange of information, especially in computerized systems. ISO 639-2 represents all languages contained in ISO 639-1 and in addition any other language as well as language groups as they may be coded for special purposes when more specificity in coding is needed. The languages listed in ISO 639-1 are a subset of the languages listed in ISO 639-2; every language code in the two-letter code set has a corresponding language code in the alpha-3 list, but not necessarily vice versa.
FAIRsharing.EEDgWH	DataStream	DataStream	DataStream is an open data platform for sharing information about freshwater health. It allows users to access, visualize and download full water and sediment quality datasets published by communities, governments and researchers.
FAIRsharing.eefm1j	Material Organic Compound	MOC	FAIRsharing curators were unable to find current information on this resource other than that available in BioPortal, resulting in a status of Uncertain for this record. If you have any information, please get in touch.
FAIRsharing.efp5v2	Animal Genome Size Database	AGSD	A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources.
FAIRsharing.EftAnp	BeanMine	BeanMine	This mine integrates many types of data for string bean built from the LIS chado database.
FAIRsharing.efwq12	UK Stem Cell Bank	UKSCB	The UK Stem Cell Bank (UKSCB) facilitates the use and sharing of quality-controlled stem cell lines to support scientific research and clinical development of stem cell therapies.  The work of the UK Stem Cell Bank covers three main areas: banking for all UK-derived human embryonic stem cell lines, research in the standardisation, quality and safety of human pluripotent stem cell (hPSC)-based products, and regulation regarding international best practice, policies and guidelines relating to stem cell use and regulation around the world.
FAIRsharing.egbgwm	Royal Society of Chemistry - Chemical Society Reviews - Data policy	None	Information for authors on writing journal articles for publication. These guidelines are relevant to all Royal Society of Chemistry journals.
FAIRsharing.EGn1ut	WALTZ-DB 2.0	WALTZ-DB 2.0	WALTZ-DB 2.0 is a database for characterizing short peptides for their amyloid fiber-forming capacities. The majority of the data comes from electron microscopy, FTIR and Thioflavin-T experiments done by the Switch lab. Apart from that class of data we also provide the amyloid annotation for several other short peptides found in current scientific research papers. Structural models of the potential amyloid cores are provided for every peptide entry.
FAIRsharing.eh75k2	Cell Press - American Journal of Human Genetics (AJHG) - Information for Authors	None	The American Journal of Human Genetics (AJHG) is owned and controlled by The American Society of Human Genetics (ASHG) and is edited, in conjunction with the publisher, by a staff appointed by the Society. Established in 1949, AJHG is currently published monthly by Cell Press. The AJHG is part of the Cell Press family of journals, and shares much of its guidelines with them. Nucleic acid and protein sequences, single-nucleotide polymorphisms (SNPs), copy-number variants (CNVs), microarray data, and macromolecular structures determined by X-ray crystallography (along with structure factors) must be deposited in the appropriate public database and must be accessible without restriction from the date of publication. Although AJHG does not require authors to deposit genotype data to a public database, they do encourage this practice.
FAIRsharing.EHVpsH	minimum information for publication of infrared-related data when microplastics are characterized	None	Reporting guidelines specific to microplastic research parameters involved in infrared spectroscopy.
FAIRsharing.EivZJw	National Omics Data Encyclopedia	NODE	NODE (The National Omics Data Encyclopedia) provides an integrated, compatible, comparable, and scalable multi-omics resource platform that supports flexible data management and effective data release.  NODE uses a hierarchical data architecture to support storage of muti-omics data including sequencing data, MS based proteomics data, MS or NMR based metabolomics data, and fluorescence imaging data.
Launched in early 2017, NODE has collected and published over 900 terabytes of omics data for researchers from China and all over the world in last three years, 22% of which contains multiple omics data. NODE provides functions around the whole life cycle of omics data, from data archive, data requests/responses to data sharing, data analysis, data review and publish.
FAIRsharing.ej56wy	NIH Data Sharing Policy	None	Data sharing is essential for expedited translation of research results into knowledge, products and procedures to improve human health. The Final NIH Statement on Sharing Research Data was published in the NIH Guide on February 26, 2003. This is an extension of NIH policy on sharing research resources, and reaffirms NIH support for the concept of data sharing.
FAIRsharing.ejeqy	Human Connectome Project	HCP	The Human Connectome Project (HCP) houses and distributes public connectome study data for a series of studies that focus on the connections within the human brain.
FAIRsharing.EJFNZn	ViBrism DB	ViBrism DB	ViBrism DB is a database for anatomical gene expression maps and topological co-expression network graphs created with original techniques of microtomy-based gene expression measurements, Transcriptome Tomography. The DB is equipped with a WebGL-based 2D/3D visualization platform, BAH viewer, and a network viewer. Users can access a total of 172,022 datasets of coding/non-coding transcripts and lncRNAs, present in the mouse brains at four post-natal stages. Expression maps are seen in the whole anatomical context of 3D MR images of the brains. In situ hybridization images and anatomical area maps are browsable in the same space of 3D expression maps. Created images are shareable using URLs, including scene-setting parameters. The DB is expandable by community activity.
FAIRsharing.ejofJI	Cassavabase	Cassavabase	Cassavabase is a database containing breeding data for Cassava (Manihot esculenta). Cassava is a major staple crop and the main source of calories for 500 million people across the globe. No other continent depends on cassava to feed as many people as does Africa. Cassava is indispensable to food security in Africa. It is a widely preferred and consumed staple, as well as a hardy crop that can be stored in the ground as a fall-back source of food that can save lives in times of famine. Despite the importance of cassava for food security on the African continent, it has received relatively little research and development attention compared to other staples such as wheat, rice and maize. The key to unlocking the full potential of cassava lies largely in bringing cassava breeding into the 21st century.
FAIRsharing.ek15yj	Integrated Tumor Transcriptome Array and Clinical data Analysis database	ITTACA	ITTACA is a database created for Integrated Tumor Transcriptome Array and Clinical data Analysis. ITTACA centralizes public datasets containing both gene expression and clinical data and currently focuses on the types of cancer that are of particular interest to the Institut Curie: breast carcinoma, bladder carcinoma, and uveal melanoma.
FAIRsharing.ekdqe5	iReceptor Public Archive	IPA	A data repository for the storage and sharing of Adaptive Immune Receptor Repertoire data. Primary public repository for the iReceptor Platform and Scientific Gateway.
FAIRsharing.ekj9zx	Standards for Reporting Enzymology Data Database	STRENDA DB	STRENDA DB is a storage and search platform supported by the Beilstein-Institut that incorporates the STRENDA Guidelines in a user-friendly, web-based system. If you are an author who is preparing a manuscript containing functional enzymology data, STRENDA DB provides you the means to ensure that your data sets are complete and valid before you submit them as part of a publication to a journal. Data entered in the STRENDA DB submission form are automatically checked for compliance with the STRENDA Guidelines; users receive warnings informing them when necessary information is missing. A successful formal compliance is confirmed by the awarding of a STRENDA Registry Number (SRN) and documented in a fact sheet (PDF) containing all input data that can be submitted with the manuscript to the journal. In addition, each dataset is assigned a DOI that allows reference and tracking of the data. The data become publicly available in the database only after the corresponding article has been peer-reviewed and published in a journal.
FAIRsharing.ekrvbq	euL1db, the European database of L1-HS retrotransposon insertions in humans	euL1db	Retrotransposons, which comprises LINE, SINE and LTR-containing elements, accounts for almost half of our genome (Fig. 1). They are mobile genetics elements - also known as jumping genes - but only the L1-HS subfamily has retained the ability to jump autonomously in modern humans. Their mobilization in germline - but also some somatic tissues - contributes to human genetic diversity and to diseases, such as cancer. euL1db provides a curated and comprehensive summary of L1-HS insertion polymorphisms identified in healthy or pathological human samples and published in peer-reviewed journals. It will help understanding the link between L1 retrotransposon insertion polymorphisms and phenotype or disease.
FAIRsharing.ekzmjp	modMine	modMine	modMine is an integrated web resource of data and tools to browse and search modENCODE data and experimental details, download results and access the GBrowse genome browser.
FAIRsharing.em3cg0	Data required for the assignation of Digital Object Identifiers in the Global Information System	GLIS Descriptors	The GLIS Descriptors are based on the FAO/IPGRI Multi Crop Passport Descriptors. They are the metadata information associated to a Digital Object Identifier (DOI) in the GLIS system; they divided into 3 classes: mandatory, highly recommended and additional.
FAIRsharing.emcjf0	UniCarbKB	UniCarbKB	UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by querying interfaces, annotation technologies and the adoption of common standards to integrate structural, experimental and functional data.
FAIRsharing.eMKdXo	IVOA Sky Event Reporting Metadata	VOEvent	VOEvent defines the content and meaning of a standard information packet for representing, transmitting, publishing and archiving information about a transient celestial event, with the implication that timely follow-up is of interest. The objective is to motivate the observation of targets-of-opportunity, to drive robotic telescopes, to trigger archive searches, and to alert the community. VOEvent is focused on the reporting of photon events, but events mediated by disparate phenomena such as neutrinos, gravitational waves, and solar or atmospheric particle bursts may also be reported. Structured data is used, rather than natural language, so that automated systems can effectively interpret VOEvent packets. Each packet may contain zero or more of the "who, what, where, when & how" of a detected event, but in addition, may contain a hypothesis (a "why") regarding the nature of the underlying physical cause of the event. Citations to previous VOEvents may be used to place each event in its correct context. Proper curation is encouraged throughout each event's life cycle from discovery through successive follow-ups. VOEvent packets gain persistent identifiers and are typically stored in databases reached via registries. VOEvent packets may therefore reference other packets in various ways. Packets are encouraged to be small and to be processed quickly. This standard does not define a transport layer or the design of clients, repositories, publishers or brokers; it does not cover policy issues such as who can publish, who can build a registry of events, who can subscribe to a particular registry, nor the intellectual property issues.
FAIRsharing.eMSVvJ	Hourly Global Ionospheric Maps	Hourly GIMs	Near real-time modeling of global ionospheric total electron content by using the hourly IGS data.
FAIRsharing.emtpa2	ESF / DFG Shared Responsibilities in Sharing Research Data:  Policies and Partnerships	ESF/DFG Sharing Research Data Policy	ESF mainly provides network funding therefore researchers are expected to follow the policies of the national agencies that directly provide research funding. As such, this document describes how participating research funding agencies should formulate clear and firm data sharing policies.
FAIRsharing.emw61v	Toxicology Data Markup Language	ToxML	ToxML is an open data exchange standard that allows the representation and communication of toxicological and related data in a well-structured electronic format. The status of this format is uncertain as the homepage is no longer accessible.
FAIRsharing.emw6am	Magnetic Resonance Dataset Acquisition Ontology	ONL-MR-DA	The OntoNeuroLOG Magnetic Resonance Dataset Acquisition (ONL-MR-DA) ontology is one of the modules in the OntoNeuroLOG ontology version 3.0, developed in the context of the NeuroLOG project., a French project supported by ANR (ANR-06-TLOG-024 grant) aiming at integrating distributed heterogeneous resources in neuroimaging. DOLCE was used as the upper-level ontology for each of the modules within this ontology. This ontology covers the domain of Magnetic Resonance Imaging (MRI) dataset acquisition, i.e. MRI protocols, and MRI sequence parameters. In particular, it includes a multi-axial classification of MR sequences. The project and its funding has been completed, and the last release (3.0) as of 2013 is expected to be the final one. However, it continues to be available for use.
FAIRsharing.en9npn	The Barcode of Life Data Systems	BOLD	The Barcode of Life Data Systems (BOLD) is an online workbench that aids collection, management, analysis, and use of DNA barcodes. It consists of 3 components (MAS, IDS, and ECS) that each address the needs of various groups in the barcoding community.
FAIRsharing.ennep4	Global Unique Device Identification Database	GUDID	The Global Unique Device Identification Database (GUDID - pronounced "Good ID") is a database administered by the FDA as part of the UDI system. The GUDID contains device identification information submitted by device companies to the FDA. The GUDID contains ONLY the Device Identifier (DI), which serves as the primary key to obtain information in the database. Production Identifiers (PI) are not submitted to or stored in the GUDID, but GUDID data indicates which PIs are on the device label. Many data elements in the GUDID correspond to information on the medical device label. The figure below shows a fictitious medical device label and identifies the GUDID data elements that appear on the label. Please refer to the FDA UDI website for more information about GUDID data elements.
FAIRsharing.enpfm4	mzXML	mzXML	mzXML an open, generic XML (extensible markup language) representation of MS data. This format is now deprecated and it has been superseded by mzML
FAIRsharing.EnRBIa	Federated Research Data Repository	FRDR	The Federated Research Data Repository (FRDR) is a place for Canadian researchers to deposit and share research data and to facilitate discovery of research data in Canadian repositories.
FAIRsharing.eNSzPf	Adaptive Immune Receptor Repertoire Software Guidelines	AIRR Software Guidelines	The Adaptive Immune Receptor Repertoire (AIRR) Software Guidelines were created by the AIRR Software Working Group to promote standards for AIRR software tools and resources in order to enable rigorous and reproducible immune repertoire research at the largest scale possible. As one contribution to this goal, we have established the a number of standards for software tools. Authors whose tools comply with this standard will, subject to ratification from the AIRR Software WG, be permitted to advertise their tools as being AIRR-compliant. The guidelines include a compliance checklist, a list of compliant tools, and recommended software evaluation data sets.
FAIRsharing.eq2pdx	Neutron, X-ray and muon Data Format	NeXus	NeXus is an international standard developed by scientists and programmers worldwide to foster more collaboration and data sharing in the analysis and visualization of neutron, x-ray, and muon data. NeXus has its foundation on HDF5 and adds domain-specific rules for organizing data within HDF5 files as welll as a dictionary of well-defined domain-specific field names.
FAIRsharing.er98b1	CutDB	CutDB	CutDB is one of the first systematic efforts to build an easily accessible collection of documented proteolytic events for natural proteins in vivo or in vitro. A CutDB entry is defined by a unique combination of these three attributes: protease, protein substrate, and cleavage site. Currently, CutDB integrates 3,070 proteolytic events for 470 different proteases captured from public archives (such as MEROPS and HPRD) and publications.
FAIRsharing.erb60y	Probabilistic Knowledge Assembly Ontology	PANDA	Probabilistic Knowledge Assembly (PANDA) Ontology has been developed in the context of the DARPA's Big Mechanism research program. It provides a semantic interface for capturing information on molecular interactions extracted from scientific texts. Conceptually, PAF ontology supports 3 layers of representation: 1) Domain knowledge: molecular interactions, their participants, structure, and (possibly) formal relationships to some external biological models. 2) Textual evidence: sentences extracted from text, speaking about those interactions, and their provenance-related information. 3) Probabilisitic information associated with different aspects of the representation (see the imported Uncertainty Ontology).
FAIRsharing.erhnxs	LCI facility data repository	None	This database is in development and as yet does not have a description available .
FAIRsharing.es03fk	Nuclear Magnetic Resonance Markup Language	NMR-ML	nmrML is an open mark-up language for NMR raw and spectral data. It is has recently seen its first proper release, ready for public use. The development of this standard was previously coordinated by the COSMOS - COordination Of Standards In MetabOlomicS Project. It is now maintained within the PhenoMeNal Eu project tasked to disseminate metabolomics data through life science e-infrastructures. The nmrML data standard is approved by the Metabolomics Standards Initiative and was derived from an earlier nmrML that was developed by the Metabolomics Innovation Centre (TMIC). It follows design principles of its role model, the mzML data standard created by PSI for mass spectrometry.
FAIRsharing.es2t25	Asset Description Metadata Schema	ADMS	ADMS is a schema used to describe data models and specifications, reference data and open source software. The standard aims to extend the use of ADMS for the description of other types of interoperability solutions, meaning solutions covering the political, legal, organisational and technical interoperability layers defined by the European Interoperability Framework.
FAIRsharing.esBStc	European Renal Association COVID-19 Database	ERACODA	The European Renal Association COVID-19 Database is a European database collecting clinical information of patients on kidney replacement therapy with COVID-19.
FAIRsharing.esxaaq	Directory Interchange Format	DIF	Directory Interchange Format (DIF) is a descriptive and standardized format for exchanging information about geospatial data sets. It includes elements focusing on instruments that capture data, temporal and spatial characteristics of the data, and projects with which the dataset is associated. From its inception in the late 1980’s as a way to document and exchange information on scientific data to its implementation in NASA's Global Change Master Directory (GCMD), the DIF has evolved to serve the user community in the discovery, access and use of Earth science and related data. GCMD metadata records are now maintained in the Common Metadata Repository (CMR), and the DIF is one of several supported formats for submitting metadata to CMR. The DIF, the ECHO metadata model, and the ISO 19115 standards for science metadata formed the basis for NASA's Unified Metadata Model (UMM) used by CMR.
FAIRsharing.EsY1WF	Scipion Workflow Repository	ScipionWorkflows	Repository of workflows for image processing in cryo-electron microscopy using Scipion.
FAIRsharing.etp65g	Catalogue of Transmission Genetics in Arabs	CTGA	The Centre for Arab Genomic Studies (CAGS) initiated the ambitious project to establish the CTGA (Catalogue of Transmission Genetics in Arabs) database for genetic disorders in Arabs with the aim to enlighten the scientific community and the public on the occurrence of inherited disorders in Arabs and to suggest future investigation strategies.
FAIRsharing.etqbej	Pocket Similarity Search using Multiple-Sketches	PoSSuM	POcket Similarity Search Using Multiple-Sketches (PoSSuM) includes all the discovered protein-small molecule binding site pairs with annotations of various types (e.g., UniProt, CATH, SCOP, SCOPe, EC number and Gene ontology). PoSSuM enables rapid exploration of similar binding sites among structures with different global folds as well as similar folds. Moreover, PoSSuM is useful for predicting the binding ligand for unbound structures.
FAIRsharing.etwpd5	BCCM/IHEM Fungi Collection: Human & Animal Health	BCCM/IHEM	BCCM/IHEM is a fungal culture collection specialized in medical and veterinary isolates. About 15.000 strains are available from all over the world: yeasts and filamentous fungi, pathogens, allergenic species, strains producing mycotoxins, reference strains, teaching material, etc. It also comprises the Raymond Vanbreuseghem collection. The BCCM/IHEM collection makes strains publicly available for medical, pharmaceutical and biological research, as well as for method validation, testing or educational purposes. Deposits of strains for public access are without costs for the depositor. The collection also offers a range of services including trainings in mycology and identifications of strains.
FAIRsharing.etXuEk	MiST 3.0: Microbial Signal Transduction database	MiST	Bacteria and archaea employ dedicated signal transduction systems that modulate gene expression, second-messenger turnover, quorum sensing, biofilm formation, motility, host-pathogen and beneficial interactions. The updated Microbial Signal Transduction (MiST) database provides a comprehensive classification of microbial signal transduction systems. This update is a result of a substantial scaling to accommodate constantly growing microbial genomic data. More than 125,000 genomes, 516 million genes and almost 100 million unique protein sequences are currently stored in the database. For each bacterial and archaeal genome, MiST 3.0 provides a complete signal transduction profile, thus facilitating theoretical and experimental studies on signal transduction and gene regulation. New software infrastructure and distributed pipeline implemented in MiST 3.0 enable regular genome updates based on the NCBI RefSeq database. A novel MiST feature is the integration of unique profile HMMs to link complex chemosensory systems with corresponding chemoreceptors in bacterial and archaeal genomes.
FAIRsharing.EtYkWo	Banana Breeding Tracker Database	BBTbase	The Banana Breeding Tracker Database (BBTbase) is a database of banana breeding information and allows users to input data from multiple stages in banana crop production, including hybridization, seed extraction, culturing, and hardening. This database also provides quick responsive (QR) codes for labelling. BBTbase has been developed at ICAR-NRCB to monitor banana breeding programs.
FAIRsharing.evxcfb	net alignment annotation Format	None	The net file format is used to describe the axtNet data that underlie the net alignment annotations in the Genome Browser.
FAIRsharing.evzkcj	PhenomeBLAST ontology	phenomeblast-owl	PhenomeBLAST is an ontology-based tool that provides a practical implementation of cross-species alignments of phenotypes using ontologies. Both a command-line tool and a web-server are available.
FAIRsharing.ew26v7	Structure Data Format	SDF	Structure Data Format (SDF) is a chemical file formats to represent multiple chemical structure records and associated data fields. SDF was developed and published by Molecular Design Limited (MDL) and became the most widely used standard for importing and exporting information on chemicals.
FAIRsharing.ew61fn	WholeCellSimDB	WholeCellSimDB	WholeCellSimDB is a database of whole-cell model simulations designed to make it easy for researchers to explore and analyze whole-cell model predictions including predicted: - Metabolite concentrations, - DNA, RNA and protein expression, - DNA-bound protein positions, - DNA modification positions, and - Ribome positions.
FAIRsharing.ewh295	iDigBio IPT	iDigBio IPT	The iDigBio IPT is a website that hosts biodiversity data and serves it in a standardised format, allowing aggregators such as iDigBio to index it into their portals whenever the data is applicable to that portal.
FAIRsharing.ewjdq6	BioSamples at the European Bioinformatics Institute	BioSD	The BioSamples database aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI's assay databases such as ArrayExpress, the European Nucleotide Archive or PRIDE. It provides links to assays and specific samples, and accepts direct submissions of sample information.
FAIRsharing.EwnE1n	FAIR Metrics - Access authorization	FM-A1.2	FM-A1.2 measures whether or not the specification describes a protocol to access restricted content. Not all content can be made available without restriction. For instance, access and distribution of personal health data may be restricted by law or by organizational policy. In such cases, it is important that the protocol by which such content can be accessed is fully specified. Ideally, electronic content can be obtained first by applying for access. Once the requester is formally authorized to access the content, they may receive it in some electronic means, for instance by obtaining an download URL, or through a more sophisticated transaction mechanism (e.g. authenticate, authorize), or by any other means. The goal should be to reduce the time it takes for valid requests to be fulfilled. Therefore the following information must be provided: i) true/false concerning whether authorization is needed, ii) a URL that resolves to a description of the process to obtain access to restricted content. This metric applies to part A1.2 of the FAIR Principles.
FAIRsharing.ewyejx	Antabif IPT - AntOBIS IPT - GBIF Belgium	None	The Belgium Biodiversity Platform hosts this data repository on behalf of the SCAR Antarctic Biodiversity Portal biodiversity.aq in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). This IPT publisher serves terrestrial and marine Biodiversity data to the relevant global networks. The marine component of AntOBIS is part of an international data sharing network (Ocean Biogeographic Information System, OBIS) coordinated by the Intergovernmental Oceanographic Commission of UNESCO (United Nations Educational, Science and Cultural Organization) International Oceanographic Data and Information Exchange.
FAIRsharing.exc0vp	iDog	iDog	iDog is an integrated resource for domestic dog (Canis lupus familiaris) and wild canids that provides the worldwide dog research community a variety of data services. This includes Genes, Genomes, SNPs, Breed/Disease Traits, Gene Expressions, Single Cell, Dog-Human Homolog Diseases and Literatures. In addition, iDog provides Online tools for performing genomic data visualization and analyses.
FAIRsharing.exmkp8	Neuroscience Information Framework Subcellular Ontology	NIFSUBCELL	NIF has developed a comprehensive vocabulary for annotating and searching neuroscience resources. A critical component of the Neuroscience Information Framework (NIF) project is a consistent, flexible terminology that can be used to describe and retrieve neuroscience-relevant resources. NeuroLex is built from our core OWL ontology, NIFSTD, in a modular fashion, with separate modules covering major domains of neuroscience: anatomy, cell, subcellular (the standard described in this record), molecule, function and dysfunction.
FAIRsharing.exz30t	Core Information for Metabolomics Reporting	CIMR	This document specifies the minimal guidelines reporting metabolomics work. It does so in a textual form and seeks in the long term to cover all application areas and analysis technologies.
FAIRsharing.ey49c6	REGULATOR	REGULATOR	REGULATOR is a metazoan transcription factor (TF) and maternal factor resource, specifically designed for developmental biology studies. Maternal factors were expressed in unfertilized eggs, and gradually reduced as time goes on. In order to reduce the search space of developmentally important genes, we only focused on those specifically expressed genes in egg stages, whose expression value ≥ 8 times than the mean value of others. There are ~77 metazoan species in the current database. The identification of TFs was based on statistical information similarity of protein features.
FAIRsharing.eyjkws	Microbial Protein Interaction Database	MPIDB	The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
FAIRsharing.eyktqz	ICLAC Database of Cross-Contaminated or Misidentified Cell Lines	None	This database lists cell lines that are currently known to be cross-contaminated or otherwise misidentified.
FAIRsharing.eZ0fzl	Adaptive Immune Receptor Repertoire: Repertoire Schema	AIRR Repertoire Schema	The Adaptive Immune Receptor Repertoire (AIRR) Repertoire Schema, part of the AIRR Data Model, describes an abstract organizational unit of analysis that is defined by the researcher and consists of study metadata, subject metadata, sample metadata, cell processing metadata, nucleic acid processing metadata, sequencing run metadata, a set of raw sequence files, data processing metadata, and a set of Rearrangements. A Repertoire gathers all of this information together into a composite object, which can be easily accessed by computer programs for data entry, analysis and visualization. The AIRR Repertoire Schema has been implemented in YAML/JSON, which provides a mechanism to share AIRR Repertoire metadata between research projects.
FAIRsharing.EZCpPd	Data Documentation Initiative Codebook	DDI-Codebook	Data Documentation Initiative (DDI-Codebook, DDI-C) is a more light-weight version of DDI-Lifecycle, intended primarily to document simple survey data. Originally DTD-based, DDI-C is now available as an XML Schema. The freely available international DDI standards describe data that result from observational methods in the social, behavioral, economic, and health sciences. DDI is used to document data in over 80 countries of the world.
FAIRsharing.ezp87	mycoCLAP	mycoCLAP	mycoCLAP is a searchable resource for the knowledge and annotation of Characterized Lignocellulose-Active Proteins of fungal origin.
FAIRsharing.EZZFFd	ClinEpiDB	ClinEpiDB	ClinEpiDB is an open-access online resource for clinical and epidemiologic studies. The website allows users to visualize and subset data directly in the ClinEpiDB browser and explore potential associations. Supporting study documentation aids contextualization, and data can be downloaded for advanced analyses. By facilitating access and interrogation of large-scale data sets, ClinEpiDB aims to spur collaboration and discovery to improve global health.
FAIRsharing.ezznsh	Newick tree Format	None	The Newick Standard for representing trees in computer-readable form makes use of the correspondence between trees and nested parentheses, noticed in 1857 by the famous English mathematician Arthur Cayley.
FAIRsharing.f0awr5	RegulonDB	RegulonDB	RegulonDB is a model of the complex regulation of transcription initiation or regulatory network of the cell. On the other hand, it is also a model of the organization of the genes in transcription units, operons and simple and complex regulons. In this regard, RegulonDB is a computational model of mechanisms of transcriptional regulation.
FAIRsharing.F0QmCP	eLife Recommended Repositories and Standards	eLife Data Policy	This policy outlines the databases, repositories and standards recommended for author use by eLIFE. eLIFE is a signatory of the TOP guidelines, that promote shared standards for increasing openness, transparency, and reproducibility, and a member of the COPE committee on publication ethics.
FAIRsharing.f1dv0	IUPHAR/BPS Guide to PHARMACOLOGY	Guide to Pharmacology	The information in the database is presented at two levels: the initial view or landing pages for each target family provide expert-curated overviews of the key properties and selective ligands and tool compounds available. For selected targets more detailed introductory chapters for each family are available along with curated information on the pharmacological, physiological, structural, genetic and pathophysiogical properties of each target. Recent extensions to the database provide specific portals for accessing data on immunopharmacology (IUPHAR Guide to IMMUNOPHARMACOLOGY; www.guidetoimmunopharmacology.org), and on malaria pharmacology (IUPHAR/MMV Guide to MALARIA PHARMACOLOGY; www.guidetomalariapharmacology.org). The database is enhanced with hyperlinks to additional information in other databases including Ensembl, UniProt, PubChem and ChEMBL, as well as curated chemical information and literature citations in PubMed.
FAIRsharing.f1m3bb	Dragon Antimicrobial Peptide Database	DAMPD	Dragon Antimicrobial Peptide Database is a manually curated database of known and putative antimicrobial peptides (AMPs). It covers both prokaryotes and eukaryotes organisms.
FAIRsharing.f1tz57	American Association for the Advancement of Science - Science - Editorial Policies; Data Materials Availability	AAAS Science Policy	The Editorial Policies page contains a broad range of guidelines for publishing in Science. Data deposition requirements state that Science supports the efforts of databases that aggregate published data for the use of the scientific community. Therefore, before publication, large data sets (including microarray data, protein or DNA sequences, atomic coordinates or electron microscopy maps for macromolecular structures, and climate data) must be deposited in an approved database and an accession number or a specific access address must be included in the published paper.
FAIRsharing.f21e5v	DataBase of Transcriptional Start Sites	DBTSS	This database includes TSS data from adult and embryonic human tissue. DBTSS now contains 491 million TSS tag sequences for collected from a total of 20 tissues and 7 cell cultures.
FAIRsharing.f2axyv	SCAR report No 30 June 2011 - SCAR Data Policy	None	SCAR (see www.scar.org) is charged with initiating, developing and coordinating high quality international scientific research in the Antarctic region, and advising on the role of the Antarctic region in the Earth system. The scientific business of SCAR is conducted by its Standing Scientific Groups in the Physical-, Life- and Geo- Sciences which represent the scientific disciplines active in Antarctic research. These groups share information on disciplinary scientific research being conducted by national Antarctic programmes; identify research areas or fields where current research is lacking; coordinate proposals for future research by national Antarctic programmes to achieve maximum scientific and logistical effectiveness; identify research areas or fields that might be best investigated by a major SCAR Scientific Research Programme; and establish Action and Expert Groups to address specific research topics within the discipline. SCAR related research data is highly multidisciplinary and disparate. This policy aims to provide a framework for these data to be handled in a consistent manner, and to strike a balance between the rights of investigators and the need for widespread access through the free and unrestricted sharing and exchange of both data and metadata. This policy is compatible with the data principles of SCAR’s parent body, ICSU and other relevant international agencies (e.g. WMO), and with the goals of Article III 1 c of the Antarctic Treaty. Since SCAR coordinates a distributed programme of research, generally implemented through a number of nationally self-managed projects, the principles enshrined in this Data Policy should be applied to data in each SCAR-endorsed Project. In order to be considered part of a SCAR Research Programme, each Project should follow the SCAR Data Policy, submit metadata and linked datasets to the Antarctic Master Directory (AMD - gcmd.gsfc.nasa.gov/Data/portals/amd/) in a reasonable timeframe, and should have an appropriately funded data management plan in place before the Project begins. Nations affiliated with SCAR are urged to establish a National Antarctic Data Centre (NADC) or assign NADC responsibilities to an existing national institution capable of carrying out NADC obligations. NADCs in collaboration with SCAR Research Projects and Programmes will work towards developing a SCAR Antarctic Data and Information System (ADMS). The SCAR Standing Committee on Antarctic Data Management (SCADM) is responsible for this Data Policy. Questions about the policy and its implementation should be directed to the SCADM Executive (see http://scadm.scar.org).
FAIRsharing.F3DLA1	Biomedical Entity Expansion, Ranking, and Explorations	BEERE	BEERE (Biomedical Entity Expansion, Ranking, and Explorations) is a web-based data analysis tool to help biomedical researchers characterize any input list of genes/proteins, biomedical terms, or their combinations, i.e., “biomedical entities”, in the context of existing literature. Specifically, BEERE first aims to help users examine the credibility of known entity-to-entity associative or semantic relationships supported by database or literature references from the user input of a gene/term list. Then, it will help users uncover the relative importance of each entity—a gene or a term—within the user input by computing the ranking scores of all entities. Lastly, it will help users hypothesize new gene functions or genotype-phenotype associations by an interactive visual interface of constructed global entity relationship network. The output from BEERE includes: a list of the original entities matched with known relationships in databases; any expanded entities that may be generated from the analysis; the ranks and ranking scores reported with statistical significance for each entity; and an interactive graphical display of the gene or term’s network within data provenance annotations that link out to external data sources. The web server is free and open to all users with no login requirement and can be accessed at http://discovery.informatics.uab.edu/beere/.
FAIRsharing.f3jewy	smartAPI specification	smartAPI	The smartAPI project aims to maximize the FAIRness (Findability, Accessibility, Interoperability, and Reusability) of web-based Application Programming Interfaces (APIs). Rich metadata is essential to properly describe your API so that it becomes discoverable, connected, and reusable. We have developed a openAPI-based specification for defining the key API metadata elements and value sets. smartAPIs leverage the Open API specification v3 and JSON-LD for providing semantically annotated JSON content that can be treated as Linked Data.
FAIRsharing.f55jfq	GenomeRNAi	GenomeRNAi	The GenomeRNAi database collects RNAi phenotypes recorded in the literature for Homo sapiens and Drosophila melanogaster, as well as details on RNAi reagents. The data is well integrated with information from other resources, allowing comparison within and across species. Download files are provided.
FAIRsharing.f55kb7	Orthologous Group Ontology	OGROUP	Ontology to help prossessing the information from orthologous groups in order to infer new functional annotations. The ontology integrates definitions from diverse ontologies.
FAIRsharing.f5b5j1	KnotProt: A database of proteins with knots and slipknots	KnotProt	KnotProt collects information about proteins with knots or slipknots. The knotting complexity of proteins is presented in the form of a matrix diagram that shows users the knot type of the entire polypeptide chain and of each of its subchains. The database presents extensive information about the biological function of proteins with non-trivial knotting and enables users to analyze new structures.
FAIRsharing.f5xs6m	BloodSpot	BloodSpot	BloodSpot is a database of mRNA expression in healthy and malignant haematopoiesis and includes data from both humans and mice. The core function of BloodSpot is to provide an expression plot of genes in healthy and cancerous haematopoietic cells at specific differentiation stages. In addition to the default plot, that displays an integrated expression plot, two additional levels of visualization are available; an interactive tree showing the hierarchical relationship between the samples, and a Kaplan-Meier survival plot. Prior to BloodSpot, this service was provided by an earlier project, HemaExplorer, also by the same research group. HemaExplorer was updated to the BloodSpot platform, which all users are encouraged to use instead.
FAIRsharing.f5zx00	Expression Atlas	Expression Atlas	The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?" The resource features proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results. The latest component, Single Cell Expression Atlas, systematically reanalyses and visualises single cell RNA-sequencing datasets and helps answer questions such as what cell population a gene can act as a marker gene.
FAIRsharing.f67zb7	LINCS Pilot Phase 1 Metadata Standards: RNAi Reagents	LINCS 1: RNAi Reagents	The LINCS Pilot Phase 1 metadata standards annotate reagents outside the context of the experiments in which they were used. RNA interference is a standard methodology to transiently knock down gene expression in living cells. This can be achieved using different types of small RNA molecules, including siRNA, shRNA, and miRNA. Information that is relevant to identify and describe these perturbations include probe ID, name, source/provider, target gene symbol and accession number, sequence of the probe, and modifications to the probe (e.g., chemical modification) if any are specified.
FAIRsharing.f7hyf3	NERC EDS Environmental Information Data Centre	EIDC	The Environmental Information Data Centre (EIDC) is a NERC Data Centre hosted by the UK Centre for Ecology & Hydrology (UKCEH). They manage nationally-important datasets concerned with the terrestrial and freshwater sciences.
FAIRsharing.f7p410	RunMyCode	RunMyCode	RunMyCode is an online repository allowing people to share code and data associated with scientific publications. Its goal is to allow members of the academic community to replicate scientific results and to demonstrate the robustness of published code.
FAIRsharing.f7ymbr	Ontology of Liver for Radiology	ONLIRA	ONLIRA (Ontology of the Liver for Radiology) focuses on a semantic specification of imaging observations of CT scans for the liver. ONLIRA extends RadLex with semantic relationships that describe and relate the concepts. Thus, automated processing tasks, such as identifying similar patients, are supported.
FAIRsharing.f8pqxt	GenomeTraFaC	GenomeTraFaC	GenomeTraFaC is a database of conserved regulatory elements obtained by systematically analyzing the orthologous set of human and mouse genes. It mainly focuses on all of the high-quality mRNA entries of mouse and human genes in the Reference Sequence (RefSeq) database of the NCBI.
FAIRsharing.f8qafw	Annmap	Annmap	Annmap is a genome browser that includes mappings between genomic features and Affymetrix microarrays. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
FAIRsharing.f94905	Eukaryotic Pathogen, Vector and Host Informatics Resource	VEuPathDB	The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) focuses on eukaryotic pathogens and invertebrate vectors of infectious diseases, , encompassing data from prior resources devoted to parasitic species (EuPathDB), fungi (FungiDB) and vector species (VectorBase). While each of the taxonomic groups within this resource is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera.
FAIRsharing.faej7j	Phallusia mammillata Anatomy and Development Ontology	PHMAMMADO	The first ontology describing the anatomy and the development of Phallusia mammillata.
FAIRsharing.fajtj3	Biorefinery	BIOREFINERY	The Biorefinery ontology (BIOREFINERY) is dedicated to the determination of the best match treatment-biomass allowing the achievement of best constituent extraction yields with minimum environmental impact. It describes characteristics of biomass relevant for bio-refinery and unitary operations to transform biomass in glucose.
FAIRsharing.farr39	G Protein-Coupled Receptor BioAssays Ontology	BAO-GPCR	The G protein-coupled receptors (GPCRs) ontology (http://www.bioassayontology.org/bao_gpcr) describes pharmacology, biochemistry and physiology of these important and therapeutically promising class of academic and pharmaceutical research targets. Incorporation and comparison of various small molecule screening data sets, such as those deposited in PubChem, ChEMBL, KEGG, PDSP, and/or IUPHAR databases, requires a formalized electronic organization system. In order to bridge the gap between the overflow of HTS data and the bottleneck of integrated analysis tools, herein, we provide the first comprehensive GPCR ontology. The development and utility of GPCR ontology was based on previously developed BioAssay Ontology (BAO). The GPCR ontology contains information about biochemical, pharmacological, and functional properties of individual GPCRs as well as GPCR-selective ligands inclusive of their HTS screening results and other records. This provides the first all-inclusive GPCR ontology with all available data to model the relationship between the GPCR binding sites and their physiologic and pharmacologic role in physiology via small molecule chemical structures. We developed this system using emerging semantic technologies, by leveraging existing and descriptive domain level ontologies.
FAIRsharing.fb0r2g	Library of Integrated Network-Based Cellular Signatures Data Portal	LINCS Data Portal	The LINCS Data Portal provides a unified interface for searching LINCS dataset packages and reagents.  LINCS data are being made openly available as a community resource through a series of data releases, so as to enable scientists to address a broad range of basic research questions and to facilitate the identification of biological targets for new disease therapies. LINCS datasets consist of assay results from cultured and primary human cells treated with bioactive small molecules, ligands such as growth factors and cytokines, or genetic perturbations. Many different assays are used to monitor cell responses, including assays measuring transcript and protein expression; cell phenotype data are captured by biochemical and imaging readouts. Assays are typically carried out on multiple cell types, and at multiple timepoints; perturbagen activity is monitored at multiple doses.
FAIRsharing.fbn4sh	Reference Sequence Annotation	RSA	An ontology for sequence annotations and how to preserve them with reference sequences.
FAIRsharing.fCAD2Z	Minimum Information Guideline for Kidney Disease: Research and Clinical Data Reporting	MIGKD	The MIGKD is a standardised reporting guideline for kidney disease research and clinical data reporting. It was created to improve the quality and integrity of kidney disease data as well as combat challenges associated with the management of ‘Big Data’. It proposes study-, sample- and disease-specific elements harmonized with existing standards.
FAIRsharing.fd28en	macromolecular Crystallographic Information File	PDBx/mmCIF	PDBx/mmCIF is a dictionary of data archiving macromolecule crystallographic experiments and their results.
FAIRsharing.fe48sc	Moroccan Genetic Disease Database	MGDD	The Moroccan Genetic Disease Database (MGDD) collect and document mutations and frequencies of polymorphisms reported in the Moroccan population. The information in the MGDD allow researchers and clinicians to find mutations associated to a given disease or gene of interest, and they can also find polymorphisms associated with susceptibility to a genetic disease or individual responses to pharmaceutical drugs or environmental factors.
FAIRsharing.fe4pja	Gene Prediction File Format	genePred	Gene Prediction File Format (genePred) is a table format commonly used for gene prediction tracks in the Genome Browser. Variations of genePred include standard format, extended format and a format which includes RefSeq genes with gene names.
FAIRsharing.fe9kyy	GREENC	GREENC	We developed a pipeline to annotate lncRNAs (Long non-coding RNAs) and applied it to 37 plant species and six algae, resulting in the annotation of more than 120 000 lncRNAs. To facilitate the study of lncRNAs for the plant research community, the information gathered is organised in the Green Non-Coding Database.
FAIRsharing.feb85q	Structured Descriptive Data	SDD	In taxonomy, descriptive data takes a number of very different forms. The goal of the Structured Descriptive Data (SDD) standard is to allow capture, transport, caching and archiving of descriptive data in all of its varied forms, using a platform- and application-independent, international standard. Such a standard is crucial to enabling lossless porting of data between existing and future software platforms including identification, data-mining and analysis tools, and federated databases.
FAIRsharing.Ff6HHc	VTechData	VTechData	Virginia Tech’s Data Repository TechData is a platform for openly publishing datasets or other research products created by Virginia Tech faculty, staff, and students. VTechData highlights, preserves, and provides access to research products (e.g. datasets) of the Virginia Tech community, and in doing so help to disseminate the intellectual output of the university in its land-grant mission.
FAIRsharing.ff7n4h	Drosophila polymorphism database	DPD	Drosophila Polymorphism Database, is a secondary database designed to provide a collection of all the existing polymorphic sequences in the Drosophila genus. It allows, for the first time, the search for any polymorphic set according to different parameter values of nucleotide diversity.
FAIRsharing.FGJ2T8	Gene Ontology (GO) Gene Association File Format 2.1	GAF 2.1	Ontology-based annotation data can be submitted to the Gene Ontology Consortium and other projects (e.g. the Planteome project) in the Gene Association Format 2.1 (GAF 2.1). The annotation flat file format is comprised of 17 tab-delimited fields. This format is preferred over the GAF 2.0 format.
FAIRsharing.fgj73t	Monosaccharide Database	MonosaccharideDB	Database on carbohydrate building blocks / residues (monosaccharides). Provides various kinds of residue data, especially notation information.
FAIRsharing.fgmzk8	Plant Experimental Assay Ontology	PEAO	The Plant Experimental Assay Ontology (PEAO) was created to describe experimental procedures within plant research, regardless of the scientific questions that prompted the assays. This ontology models entities from three distinct realms (biological, physical and data), which include experimental products, their relations and the protocols describing their manipulation. PEAO is intended to be used as a log book by experimentalists, providing a formal relation between entities.
FAIRsharing.fh5zm7	Signaling Pathway Information System	SigPath	SigPath is an information system designed to support quantitative studies on the signaling pathways and networks of the cell.A primary emphasis of SigPath is that biochemical information is stored with the details required to make possible quantitative modeling of specific aspects of the cellular machinery. A second emphasis of the system is that SigPath provides user-friendly ways to submit information.
FAIRsharing.fhn1zb	Traditional Medicine Signs and Symptoms Value Set	TM-SIGNS-AND-SYMPTS	The World Health Organization, in consultation with a large group of stakeholders in the areas of Traditional Medicine or Complementary and Alternative Medicine and Health Information Systems, has developed a collaborative project plan to produce an international standard terminology and classification system for Traditional Medicine. This resource is part of an effort to produce an international standard for information on TM that is ready for electronic health records and that will serve as a standard for scientific comparability and communication.
FAIRsharing.FiYkCp	EMODnet Seabed Habitats	None	The EMODnet Seabed Habitats data portal provides free access to data and data products on the extent and distribution of seabed habitats in all European regional seas. The European Marine Observation and Data Network (EMODnet) is financed by the European Union under Regulation (EU) No 508/2014 of the European Parliament and of the Council of 15 May 2014 on the European Maritime and Fisheries Fund.
FAIRsharing.fj1d4d	Magnaporthe grisea Database	MGG	The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. The project is a partnership between the International Rice Blast Genome Consortium, and the Broad Institute. The project is facilitated by an Advisory Board made up of members of the rice blast research community.
FAIRsharing.fk0z49	Host Pathogen Interaction Database	HPIDB	HPIDB 3.0 is a resource that helps annotate, predict and display host-pathogen interactions (HPI). HPI that underpin infectious diseases are critical for developing novel intervention strategies. HPIDB is a host-pathogen protein-protein interaction (PPI) database, which serves as a unified resource for host-pathogen interactions. HPIDB integrates experimental PPIs from several public databases into a single, non-redundant web accessible resource.
FAIRsharing.fk6zhb	mz Quantitative Markup Language	mzQuantML	The mzQuantML standard format is intended to store the systematic description of workflows quantifying molecules (principally peptides and proteins) by mass spectrometry. A large number of different software packages are available that produce output in a variety of different formats. It is intended that mzQuantML will provide a common format for the export of identification results from any software package.
FAIRsharing.fkrc9	XDF - A Language for the Definition and Exchange of Biological Data Sets	XDF	XDF is a high-level language for describing biological data, with its own syntax and command vocabulary, analogous to the high-level programming languages used to describe software algorithms. Provision is made within XDF for predefined standard definitions of the common core elements of biological data sets such as the taxonomic hierarchy, biological nomenclature, descriptive material and bibliography.
FAIRsharing.FL1LNB	Translocatome	Translocatome	Translocatome is a database that collects and characterises manually curated and predicted translocating proteins from human cells. The prediction is made by a gradient boosting based machine learning algorithm (XGBoost), using highly curated positive and negative learning sets.
FAIRsharing.FL7Oc9	Policy for IDG Data Sharing and Publication by IDG Members	None	All IDG members funded by the IDG Program are bound by their U24 cooperative agreements and FOA requirements for sharing of IDG data. Each DRGC is responsible for their individual raw data file storage and is accountable for sharing their resulting quality-controlled data via public data repositories. The guiding principles for sharing IDG generated resources are set by NIH Sharing Policies (https://grants.nih.gov/policy/sharing.htm ) and the Resource Sharing Plan guidelines stated in the original IDG FOAs: “A primary goal of the IDG Program is to facilitate discoveries of the broad scientific community for the improvement of public health. Restrictive licensing and sharing practices for IDG-generated data, tools, and resources could substantially diminish their value and public benefit. Accordingly, awardees should manage data, resources, protocols, tools, and software in a way that achieves this primary goal. Sharing practices that would prevent or block access to or use of IDG Program data, tools, and resources for research purposes will be considered to be hindering the goals of the IDG Program."
FAIRsharing.fmc0g0	CSIRO Data Access Portal	CSIRO DAP	The CSIRO Data Access Portal provides access to research data, software and other digital assets published by CSIRO across a range of disciplines. The portal is maintained by CSIRO Information Management & Technology to facilitate sharing and reuse.
FAIRsharing.fmz635	Gramene Taxonomy Ontology	GR-TAX	Gramene Taxonomy Ontology (GR-TAX) is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily derived from NCBI Taxonomy, the revisions were made as and when/where required in the rankings. The rank of genome types was added by this project. This taxonomy ontology focuses on the Poaceae (Gramineae) family of plant taxonomy only.
FAIRsharing.FnkS1A	Drug Database for Inborn Errors of Metabolism	DDIEM	DDIEM - Drug Database for inborn errors of metabolism is a database on therapeutic strategies for inborn errors of metabolism. These strategies are classified by mechanism and outcome in DDIEM ontology. DDIEM uses this ontology to categorize the experimental treatments that have been proposed or applied. The database includes descriptions of the phenotypes addressed by the treatment and drugs participating in treatment and procedures.
FAIRsharing.fNXAq5	ETH Zürich Research Collection	ETH Zurich Research Collection	The Research Collection provides a comprehensive database of scholarly publications produced at ETH Zurich (science and technology university).
FAIRsharing.fpwvra	Biological Observation Matrix Ontology	BIOMO	The BIOMO ontology maps the HDF5 based BIOM format (http://biom-format.org/) to OWL, offering a method to convert a BIOM file to RDF and therefore publish it as Linked Data
FAIRsharing.fqcrpt	Telomerase Database	None	The Telomerase Database is a Web-based tool for the study of structure, function, and evolution of the telomerase ribonucleoprotein. The objective of this database is to serve the research community by providing a comprehensive compilation of information known about telomerase enzyme and its substrate, telomeres.
FAIRsharing.fr3ng0	Edinburgh Human Developmental Anatomy Abstract	EHDAA	A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy (EMAP ontology) and incorporates each Carnegie stage of development (CS1-20). This abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just heart really means heart (CS 9-20). This ontology was made computationally and later deemed "incoherent" by the authors because the stage-dependent hierarchical structures were not integrated.
FAIRsharing.fr95Qm	The database of eukaryotic RNA binding proteins	EuRBPDB	EuRBPDB is a comprehensive and user-friendly database for classifying and annotating eukaryotic RNA binding proteins (RBPs) drawn from various public databases. Over 100 eukaryotic species such as human, mouse, fly, worm and yeast are included. EuRBPDB also provides information on known and potential cancer-associated RBPs.
FAIRsharing.frp1rm	Cancer Research and Management ACGT Master Ontology	ACGT-MO	The intention of the ACGT Master Ontology (MO) is to represent the domain of cancer research and management, with special emphasis on mammary carcinoma (“breast cancer”), Wilms’ tumor (nephroblastoma) and rhabdoid tumor.
FAIRsharing.frr5dh	REporting recommendations for tumour MARKer prognostic studies	REMARK	As for the successful CONSORT initiative for randomized trials and for the STARD statement for diagnostic studies, we suggest guidelines to provide relevant information about the study design, preplanned hypotheses, patient and specimen characteristics, assay methods, and statistical analysis methods. In addition, the guidelines provide helpful suggestions on how to present data and important elements to include in discussions.
FAIRsharing.frryvx	SUPERFAMILY	SUPERFAMILY	SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes.
FAIRsharing.FrSPDi	Artificial Nutrition Thesaurus	None	This thesaurus is based on the vocabulary used in scientific publications for Artificial nutrition and neighbor fields. It contains more than 2500 concepts in two languages (English and French), including various variants (synonyms, acronyms) divided into a number of microthesauri where the terms are grouped around a theme or a semantic field.
FAIRsharing.fsB7NK	FAIR Metrics - Accessible Usage License	FM-R1.1	FM-R1.1 is a metric concerned with the existence of a license document, for BOTH (independently) the data and its associated metadata, and the ability to retrieve those documents. A core aspect of data reusability is the ability to determine, unambiguously and with relative ease, the conditions under which (meta)data may be reused. Thus, FAIR data providers must make these terms openly available. This applies both to data (e.g. for the purpose of third-party integration with other data) and for metadata (e.g. for the purpose of third-party indexing or other administrative metrics). The IRI of the license (e.g. its URL) for the data license and for the metadata license must be provided. This metric applies to part R1.1 of the FAIR Principles.
FAIRsharing.FSIfv8	Domain Resource Application Ontology	DRAO	The Domain Resource Application Ontology (DRAO) is an application ontology describing cross-discipline research domains used within FAIRsharing records by curators and the user community. It is built in conjunction with the Subject Resource Application Ontology (SRAO), which describes higher-level subject areas / disciplines. All classes within DRAO come from over 50 publicly-available ontologies.
FAIRsharing.fsk662	Host Pathogen Interactions Ontology	HPIO	Ontology for host pathogen interactions in farmed animals.
FAIRsharing.fssydn	DisGeNET	DisGeNET	DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.
FAIRsharing.ft8113	Norwegian national quality registries- Variabelbibliotek for medisinske kvalitetsregistre	NORREG	Record does not exist anymore: Norwegian national quality registries- Variabelbibliotek for medisinske kvalitetsregistre. The record with identifier content https://doi.org/10.25504/FAIRsharing.ft8113 was invalid.
FAIRsharing.fttsOm	Guidelines and Principles for the Selection of Use of 10% Restricted Funds by the DRGCs of the IDG Program	None	The Illuminating the Druggable Genome (IDG) program focuses on the properties and functions of proteins that are currently unannotated within the three most commonly drug-targeted protein families: G-protein coupled receptors, ion channels, and protein kinases. This policy requires that 10% of the funds received by the DRGCs for IDG related work are restricted for collaborative projects that advance the IDG mission beyond the core proposed capabilities.
FAIRsharing.fvmr52	Cell Press - Trends In Plant Science - Information for Authors	None	The Information for Authors page contains a broad range of guidelines for publishing in Trends in Plant Science. This journal provides succinct updates, opinions, and discussions on the most exciting current research in all aspects of plant science, from molecular biology through to ecology. Every issue of Trends in Plant Science contains brief, readable Review and Opinion articles that keep readers up to date on the latest trends, important developments, and new ideas both within and outside their specialist area. Review and Opinion articles are commissioned from leading scientists and are then subjected to stringent peer review, ensuring balance and accuracy.
FAIRsharing.fvw159	caracepathaml	CEPATHAMIL	Record does not exist anymore: caracepathaml. The record with identifier content https://doi.org/10.25504/FAIRsharing.fvw159 was invalid.
FAIRsharing.fw8k2k	Thesaurus for Animal Physiology and Livestock Systems	TRIPHASE	TriPhase is a large thesaurus in the domain of animal physiology and livestock designed by INRA. This resource has been marked as Uncertain as we cannot find a homepage, publication or other documentation for it. Please contact us if you have any information regarding this resource.
FAIRsharing.fw8stq	Springer Nature Research Data Policy Type 3	None	Springer Nature Research Data Policy Type 3 encourages data sharing and requires statements of data availability. This ensures that materials described in the manuscript, including all relevant raw data, will be freely available to any researcher wishing to use them for non-commercial purposes, without breaching participant confidentiality. The journal strongly encourages that all datasets on which the conclusions of the paper rely should be available to readers. They also encourage authors to ensure that their datasets are either deposited in publicly available repositories (where available and appropriate) or presented in the main manuscript or additional supporting files whenever possible. Journals adhering to this policy recommend 1) the resources listed directly within this record, and 2) all resources listed in this record's parent policies (see the "extends" relationship).
FAIRsharing.FwFGGF	PhenoDis	PhenoDis	PhenoDis is a manually annotated database providing symptomatic, genetic and imprinting information about rare cardiac diseases. PhenoDis is primarily concerned with the assignment of clinical symptoms to rare diseases using the biomedical literature as information source and the Human Phenotype Ontology (HPO) as vocabulary.
FAIRsharing.fwg0qf	BenchSci	BenchSci	BenchSci is a free platform designed to help biomedical research scientists quickly and easily identify validated antibodies from publications. Using various filters including techniques, tissue, cell lines, and more, scientists can find out published data along with the antibody that match specific experimental contexts within seconds. Free registration & access for academic research scientists.
FAIRsharing.fwzf0w	TTD, Therapeutic Target Database	None	The Therapeutic Target Database provides information about therapeutic protein and nucleic acid targets, the targeted disease, pathway information and the corresponding drugs directed at each of these targets.  Also included in this database are links to relevant databases containing information about target function, sequence, 3D structure, ligand binding properties, enzyme nomenclature and drug structure, therapeutic class, clinical development status. All information is fully referenced.
FAIRsharing.FxfF4o	Back Pain Consortium Comorbidity Assessment Guidelines	BACPAC Comorbidity Assessment Guidelines	This document includes recommendations for how comorbidities should be assessed in the clinic and via electronic health records. The document recommends ICD-10 codes to be used with the Charlson Comorbidity Index and adds a question regarding COVID diagnosis.
FAIRsharing.fy2ebk	PlantRNA	PlantRNA	The PlantRNA database compiles tRNA gene sequences retrieved from fully annotated plant nuclear, plastidial and mitochondrial genomes. For each tRNA gene, the linear secondary structure is given as well as biological information. This includes 5'- and 3'- flanking sequences, A and B box sequences, region of transcription initiation and poly(T) transcription termination stretches, tRNA intron sequences, aminoacyl-tRNA synthetases and enzymes responsible for tRNA maturation and modification. Data on mitochondrial import of nuclear-encoded tRNAs as well as the bibliome for the respective tRNAs and tRNA binding proteins are also included.
FAIRsharing.fYFurb	PeanutBase	PeanutBase	Large-scale genomic data for the peanut have only become available in the last few years, with the advent of low-cost sequencing technologies. To make the data accessible to researchers and to integrate across diverse types of data, the International Peanut Genomics Consortium funded the development of PeanutBase. This database provides access to genetic maps and markers, locations of quantitative trait loci (QTLs), genome sequences, gene locations and sequences, gene families and correspondences with genes in other species, and descriptions of traits and growth characteristics. It also provides tools for exploration and analysis, including sequence of genomic and genic sequences, and keyword searches of genes, gene families, and QTL studies. These resources should facilitate breeding advancements in peanut, helping improve crop productivity and there are a variety of resources for peanut research around the web, ranging from tools for basic plant biology to information for growers and various sectors of the peanut industry to resources for plant breeders.
FAIRsharing.fyiMub	Electrical engineering and Electro-energetics vocabulary	None	Terminology resource derived from a controlled vocabulary used for indexing bibliographical records for the PASCAL database of Inist (1972-2015, http://pascal-francis.inist.fr/), in the fields of Electrical engineering and Electro-energetics. It is aligned with wikidata. This resource contains 6630 entries grouped into 34 collections.
FAIRsharing.fyqk5z	Gene3D	Gene3D	Gene3D uses the information in CATH to predict the locations of structural domains on millions of protein sequences available in public databases. Sequence data from UniProtKB and Ensembl for domains with no experimentally determined structures are scanned against CATH HMMs to predict domain sequence boundaries and make homologous superfamily assignments.
FAIRsharing.fzkw7z	Plant occurrence and status scheme	POSS	The Plant Occurrence and Status Scheme (POSS) has been developed to provide standard terms for recording the occurrence of a plant taxon for a specific location. As with all standards, POSS aims to provide both a clear, unambiguous framework for information management, and at the same time provides a mechanism for information exchange.While this standard is still in use, it is no longer actively maintained (and is labelled as prior on the TDWG website).
FAIRsharing.fztr98	FAANG metadata experiment specification standard	None	The FAANG metadata experiment specification document describes the principles and structure for the FAANG metadata guidance. The main goal of the FAANG standards is to ensure all FAANG experiments are well described and that the description is well structured. We support the MIAME and MINSEQE guidelines, and aim to convert them to a concrete specification. The FAANG project will establish an infrastructure capable of efficiently analyzing genome-wide functional data for animal species.
FAIRsharing.g201pt	Agri-Food Experiment Ontology	AFEO	The Agri-Food Experiment Ontology (AFEO) is based on two existing ontology resources, OAE (Ontology for Agriculture Experiment) and OFPE (Ontology for Food Processing Experiment). It covers various viticultural practices, winemaking products and operations. FAIRsharing is unable to contact the developers of this resource, and cannot find a project homepage. Therefore this record's status has been marked as Uncertain. Please get in touch if you have any information regarding this resource.
FAIRsharing.g2cf4x	CollecTF	CollecTF	CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation and data extraction, its relevance to the community, the quality and detail of the stored data and the up-to-date nature of the stored information.
FAIRsharing.g2ChgH	VOTable Format Definition	VOTable	Astronomers have always been at the forefront of developments in information technology, and funding agencies across the world have recognized this by  supporting the Virtual Observatory movement, in the hopes that other sciences and business can follow their lead in making online data both interoperable and scalable. VOTable is designed as a flexible storage and exchange format for tabular data, with particular emphasis on astronomical tables. The VOTable format is an XML standard for the interchange of data represented as a set of tables. In this context, a table is an unordered set of rows, each of a uniform structure, as specified in the table description (the table metadata). Each row in a table is a sequence of table cells, and each of these contains either a primitive data type, or an array of such primitives. VOTable is derived from the Astrores format, itself modeled on the FITS Table format; VOTable was designed to be close to the FITS Binary Table format.
FAIRsharing.g2fjt2	European Mouse Mutant Archive	EMMA	The European Mouse Mutant Archive (EMMA) is a non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. The laboratory mouse is the most important mammalian model for studying genetic and multi-factorial diseases in man. Thus the work of EMMA will play a crucial role in exploiting the tremendous potential benefits to human health presented by the current research in mammalian genetics.
FAIRsharing.g3j5qj	Orthologous MAtrix	OMA	The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes. The distinctive features of OMA are its broad scope and size, high quality of inferences, feature-rich web interface, availability of data in a wide range of formats and interfaces, and frequent update schedule of two releases per year.
FAIRsharing.g4z879	Open Science Framework	OSF	The Open Science Framework (OSF) is a free and open source project management tool that supports the entire research lifecycle: planning, execution, reporting, archiving, and discovery. Features include automated versioning, logging of all actions, collaboration support, free and unlimited file storage, registrations, and connections to other tools/services (ie. Dropbox, figshare, Amazon S3, Dataverse, GitHub). It is 100% free to researchers, open source, and intended for use in all domain areas. OSF has an open, public API to support broad indexing, as well as a partnership with Internet Archive for long-term preservation with a $250k preservation fund and an IMLS grant for transfer to Internet Archive (currently in progress). The OSF supports embargoing during peer review via a view-only link with the ability to anonymize contributor list. It also provides managed access by allowing access requests and private sharing settings. OSF is a non-profit with direct funder support through grants, government contracts, and community memberships.
FAIRsharing.g56qnp	Histone Infobase	HIstome	HIstome (Human histone database) is a freely available, specialist, electronic database dedicated to display information about human histone variants, sites of their post-translational modifications and about various histone modifying enzymes.
FAIRsharing.g593w1	EDAM Bioimaging Ontology	EDAM-BIOIMAGING	Bioimaging operations, data types, formats, identifiers and topics. EDAM-Bioimaging is an extension to the EDAM ontology (edamontology.org) for bioimaging, developed in collaboration with partners from NEUBIAS (neubias.org).
FAIRsharing.g646hq	MetalPDB	MetalPDB	MetalPDB is a resource aimed at conveying the information available on the three-dimensional structures of metal-binding biological macromolecules in a consistent and effective manner. This is achieved through the systematic and automated representation of metal-binding sites in proteins and nucleic acids by way of Minimal Functional Sites (MFSs). MFSs are three-dimensional templates that describe the local environment around the metal(s) independently of the larger context of the macromolecular structure embedding the site(s), and are the central objects of MetalPDB design. MFSs are grouped into equistructural (broadly defined as sites found in corresponding positions in similar structures) and equivalent sites (equistructural sites that contain the same metals), allowing users to easily analyze similarities and variations in metal-macromolecule interactions, and to link them to functional information.
FAIRsharing.g6kz6h	Infevers	Infevers	A registry of Hereditary Auto-inflammatory Disorder Mutations.
FAIRsharing.g75npx	CEEROntology	CEEROntology	CEEROntology has little information available. If you know more about this ontology, please do get in touch with us.
FAIRsharing.g78mbm	Livestock Product Trait Ontology	LPT	The Livestock Product Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.
FAIRsharing.g7y77y	Ciona savignyi Anatomy and Development Ontology	CISAVIADO	The first ontology describing the anatomy and the development of Ciona savignyi, based on the Hotta developmental table.
FAIRsharing.g84yb7	Atmospheric Radiation Measurement Data Archive	ARM Data Archive	The Atmospheric Radiation Measurement (ARM) Data Archive stores continuous measurements—supplemented by field campaigns—and provides data products that promote the advancement of climate models. ARM data include routine data products, value-added products (VAPs), field campaign data, complementary external data products from collaborating programs, and data contributed by ARM principal investigators for use by the scientific community. Data quality reports, graphical displays of data availability/quality, and data plots are also available from the ARM Data Center. These data are available free of charge to the public.
FAIRsharing.gaegy8	MIAME Notation in Markup Language	MINiML	MINiML (MIAME Notation in Markup Language, pronounced 'minimal') is a data exchange format optimized for microarray gene expression data, as well as many other types of high-throughput molecular abundance data. MINiML assumes only very basic relations between objects: Platform (e.g., array), Sample (e.g., hybridization), and Series (experiment). MINiML captures all components of the MIAME checklist, as well as any additional information that the submitter wants to provide. MINiML uses XML Schema as syntax.
FAIRsharing.gaqfk4	HGeneCodonOntology	HCODONONT	This ontology contains the information of the frequency of usage and the relative frequency of usage of Human Gene Codons, to be used to the operations by The Project Of HIV Ontology.
FAIRsharing.gB7jed	Core Scientific Dataset Model	CSDM	The Core Scientific Dataset (CSD) model with JavaScript Object Notation (JSON) serialization is a lightweight, portable, and versatile standard for intra- and interdisciplinary scientific data exchange. This model supports datasets with a p-component dependent variable, {U0, …, Uq, …, Up−1}, discretely sampled at M unique points in a d-dimensional independent variable (X0, …, Xk, …, Xd−1) space. Moreover, this sampling is over an orthogonal grid, regular or rectilinear, where the principal coordinate axes of the grid are the independent variables. It can also hold correlated datasets assuming the different physical quantities (dependent variables) are sampled on the same orthogonal grid of independent variables. The model encapsulates the dependent variables’ sampled data values and the minimum metadata needed to accurately represent this data in an appropriate coordinate system of independent variables. The CSD model can serve as a re-usable building block in the development of more sophisticated portable scientific dataset file standards.
FAIRsharing.gbavnh	Springer Nature - Nature Methods - Availability of Data and Materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.GbmifP	Repository & Open Science Access Portal	ROSA P	ROSA P is the United States Department of Transportation (USDOT) National Transportation Library's (NTL) Repository and Open Science Access Portal. The name ROSA P was chosen to honor the role public transportation played in the civil rights movement, along with one of the important figures, Rosa Parks. Founded as an all-digital library program, NTL’s collections in ROSA P are full-text digital publications, datasets, and other resources. Legacy print materials that have been digitized are collected if they have historic, technical, or national significance. The repository is also designated as the full-text repository for USDOT-funded research under the USDOT Public Access Plan. Collections in ROSA P are available without restriction to transportation researchers, statistical organizations, the media, and the general public. NTL collects resources across all modes of transportation and related disciplines, with specific focus on information produced by USDOT, state DOTs, and other transportation organizations. Content types found in ROSA P include textual works, datasets, still image works, moving image works, other multimedia, and maps. All resources in ROSA P are in the public domain and/or explicit permission has been provided by the rights holder to NTL to make their materials available for free over the web.
FAIRsharing.gbrmh4	Medaka Expression Pattern Database	MEPD	MEPD contains expression data of genes and regulatory elements assayed in the Japanese killifish Medaka (Oryzias latipes).
FAIRsharing.gct3wr	statismo - Statistical Image And Shape Models	statismo	Statismo defines a storage format (Statistical Image And Shape Models) based on HDF5, which includes all the information necessary to use the model, as well as meta-data about the model creation, which helps to make model building reproducible.
FAIRsharing.gct90r	JRC Data Policy	None	The work on the JRC Data Policy followed the task identified in the JRC Management Plan 2014 to develop a dedicated data policy to complement the JRC Policy on Open Access to Scientific Publications and Supporting Guidance, and to promote open access to research data in the context of Horizon 2020. Important policy commitments and the relevant regulatory basis within the European Union and the European Commission include: the Commission Decision on the reuse of Commission documents, Commission communication on better access to scientific information, Commission communication on a reinforced European research area partnership for excellence and growth, Commission recommendation on access to and preservation of scientific information, and the EU implementation of the G8 Open Data Charter.
FAIRsharing.gcxmpf	BEI Resource Repository	BEI	BEI Resources provides reagents, tools and information for studying Category A, B, and C priority pathogens, emerging infectious disease agents, non-pathogenic microbes and other microbiological materials of relevance to the research community.
FAIRsharing.gd8hqn	Molgula occidentalis Anatomy and Development Ontology	MOOCCIADO	The first ontology describing the anatomy and the development of Molgula occidentalis.
FAIRsharing.gdj215	Madagascar Biodiversity Information Facility IPT - GBIF France	MadBIF IPT - GBIF France	GBIF France hosts this data repository on behalf of Madagascar Biodiversity Information Facility (MadBIF) in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Most data collected within Madagascar is not documented and is only accessible to the person/team involved in the project for which the data has been collected. Moreover, there is a lack of data policy within the institutions of Madagascar. As a consequence, data knowledge is linked to individuals and disappears with them. The only public information that can be found is the information located in herbaria, museums, and various literature. MadBIF aims to promote and support publication of biodiversity data by data holders.
FAIRsharing.gdqqm0	caArray	caArray	The Cancer gene expression and microarray data of the National Cancer Institute
FAIRsharing.gdrs2p	Semantic DICOM Ontology	SEDI	An ontology for DICOM as used in the SeDI project.
FAIRsharing.GeWcY6	European Medical Information Framework Catalogue	EMIF Catalogue	The EMIF catalogue contains extensive metadata on a number of European health data resources, such as registries, EHRs, biobanks etc., organized by a number of communities, such as EMIF-EHR, EMIF-AD, EPAD, ADVANCE, BigData@Heart, PIONEER etc. The metadata collected is the data available, the data governance procedures, contact details etc. The catalogue intends to comprise different vertical projects through the creation of communities, such as EMIF-Electronic Health Record Data (EMIF-EHR) and EMIF-Alzheimer’s Disease (EMIF-AD), the BigData@Heart (for cardiovascular) and PIONEER (for prostate cancer) projects, supporting distinct databases and users.
FAIRsharing.gg60g3	The Improved Database Of Chimeric Transcripts and RNA-Seq Data	ChiTaRS	The ESTs and mRNAs from GenBank have been used to identify chimeric RNAs of two or more different genes. By analyzing thousands of chimeric ESTs by RNA sequencing, we found that the expression level of chimeric ESTs is generally low and they are highly tissue specific in normal cells. Here we present the improved version of the ChiTaRS database (ChiTaRS-5.0) with more then (66,243 + 41,584 + 3,052 + 19 + 67 + 20 + 292 + 305) = 111,582 chimeric transcripts in humans, mice, fruit flies, rats, zebrafishes, cows, pigs, and yeast. In the current version we extended the experimental data evidence as well as included a novel type of the sense-antisense chimeric transcripts of the same gene confirmed experimentally by RT-PCR, qPCR, RNA-sequencing and mass-spec peptides. In addition, we collected 23,167 human cancer breakpoints with the expression levels of chimeric RNAs confirmed by the paired-end RNA-sequencing experiments in different tissues in humans, mice and fruit flies.
FAIRsharing.ghg7a8	The Plant Cell - Instructions for Authors	None	The Instructions for Authors page contains a broad range of guidelines for publishing inThe Plant Cell. Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data) that are integral to the manuscript must be provided at time of manuscript submission. These include data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc. At the time of publication, these large-scale data sets must be available to readers in a permanent public repository with open access. Full data sets must be released, even if only a subset of the data was selected for use in the analysis.
FAIRsharing.gJ4ayC	IVOA Registry Relational Schema	RegTAP	Registries provide a mechanism with which Virtual Observatory (VO) applications can discover and select resources - first and foremost data and services - that are relevant for a particular scientific problem. This specification defines an interface for searching this resource metadata based on the IVOA's TAP protocol. It specifies a set of tables that comprise a useful subset of the information contained in the registry records, as well as the table's data content in terms of the XML VOResource data model. The general design of the system is geared towards allowing easy authoring of queries.
FAIRsharing.gjn0y	Quantitative Imaging Biomarker Ontology	QIBO	An ontology that describes various concepts in quantitative imaging biomarkers.
FAIRsharing.gk7nfn	Beijing Genomics Institute Rice Information System	BGI-RIS	In BGI-RIS, sequence contigs of Beijing indica and Syngenta japonica have been further assembled and anchored onto the rice chromosomes. The database has annotated the rice genomes for gene content, repetitive elements, and SNPs. Sequence polymorphisms between different rice subspecies have also been identified.
FAIRsharing.gncawv	Portugal IPT - GBIF Portugal	None	GBIF Portugal promotes the free and open sharing of primary biodiversity data and enriches knowledge of Portuguese and World biodiversity. It promotes the integration of Portuguese data publishers and resources of biodiversity information on the GBIF network, and the availability of biodiversity data for the scientific research and societal needs.
FAIRsharing.gneqg7	Minimal Information about a Self-Monitoring Experiment	MISME	This is reporting guideline for self-monitoring and quantified-self experiments and their use for research purposes
FAIRsharing.gnga3t	Personal Genome SNP Format	None	This format is for displaying SNPs from personal genomes. It is the same as is used for the Genome Variants and Population Variants tracks.
FAIRsharing.GOZFxU	Signal theory and processing vocabulary	None	Vocabulary used for indexing bibliographical records dealing with the field "Signal theory and processing" in the PASCAL database, until 2014. This resource contains 2483 entries in 3 languages (English, French, and Spanish), grouped in 84 collections.
FAIRsharing.gp3r4n	Preferred Reporting Items for Systematic reviews and Meta-Analyses	PRISMA	PRISMA is an evidence-based minimum set of items for reporting in systematic reviews and meta-analyses.The aim of the PRISMA Statement is to help authors improve the reporting of systematic reviews and meta-analyses. This resource focuses on randomized trials, but can also be used as a basis for reporting systematic reviews of other types of research, particularly evaluations of interventions.
FAIRsharing.GPYJ4G	IVOA Support Interfaces	VOSI	IVOA Support Interfaces (VOSI) describes the minimum interface that a web service requires to participate in the IVOA. Note that this is not required of standard VO services developed prior to this specification, although uptake is strongly encouraged on any subsequent revision. All new standard VO services, however, must feature a VOSI-compliant interface.
FAIRsharing.gr06tm	CONSOlidated standards of Reporting Trials	CONSORT	CONSORT encompasses various initiatives developed by the CONSORT Group to alleviate the problems arising from inadequate reporting of randomized controlled trials (RCTs). The 2010 guideline is intended to improve the reporting of parallel-group randomized controlled trial (RCT), enabling readers to understand a trial's design, conduct, analysis and interpretation, and to assess the validity of its results. This can only be achieved through complete adherence and transparency by authors. CONSORT 2010 was developed through collaboration and consensus between clinical trial methodologists, guideline developers, knowledge translation specialists, and journal editors (see CONSORT group ). CONSORT 2010 is the current version of the guideline and supersedes the 2001 and 1996 versions . It contains a 25-item checklist and flow diagram.
FAIRsharing.gr46wx	Transparent Reporting of Evaluations with Non-randomized Designs	TREND	Transparent Reporting of Evaluations with Non-randomized Designs (TREND) is a 22-item checklist specifically developed to guide standardized reporting of non-randomized controlled trials. The TREND statement complements the widely adopted CONsolidated Standards Of Reporting Trials (CONSORT) statement developed for randomized controlled trials. It is intended to be used as a guide when designing evaluation studies, reporting evaluation results, and reviewing manuscripts for scientific publication. Evidence-based public health decisions are based on evaluations of intervention studies with randomized and non-randomized designs. Transparent reporting is crucial for assessing the validity and efficacy of these intervention studies, and, it facilitates synthesis of the findings for evidence-based recommendations. TREND is intended to improve the reporting standards of non-randomized evaluations of behavioral and public health intervention.
FAIRsharing.grL0zu	ObjTables Schemas	ObjTables Schemas	ObjTables Schemas allow the creation of re-usable datasets that are both human and machine-readable, combining the ease of spreadsheets (e.g., Excel workbooks) with the rigour of schemas (classes, their attributes, the type of each attribute, and the possible relationships between instances of classes). ObjTables schemas can either be defined with a tabular format or with the ObjTables Python package. The tabular format is easy to use, and requires no programming. The tabular format supports most of the features of ObjTables, including a wide range of data types, relationships, transposed and embedded tables, single inheritance, and basic validation. The ObjTables Python package is more flexible. ObjTables is ideal for supplementary materials of journal article, as well as for emerging domains which need to quickly build new formats for new types of data and associated software with minimal effort.
FAIRsharing.grqm4q	CDISC Protocol Representation Model	CDISC PRM	The CDISC Protocol Representation Model (PRM) provides a standard for planning and designing a research protocol with focus on study characteristics such as study design, eligibility criteria, and requirements from the ClinicalTrials.gov, World Health Organization (WHO) registries, and EudraCT registries. PRM assists in automating CRF creation and EHR configuration to support clinical research and data sharing.
FAIRsharing.gse6dh	American Society of Hematology - Blood - Manuscript Preparation	None	The Manuscript Preparation document for the Blood journal provides a number of guidelines describing how manuscripts should be written. The policy includes information on the public repositories and data standards which are required for publication in the journal. Blood adheres to the criteria of the International Committee of Medical Journal editors, which has established Uniform Requirements for Manuscripts Submitted to Biomedical Journals. Blood recommends that authors follow the ARRIVE guidelines when reporting in vivo experiments in animal research. For phase 3 randomized clinical trials, we request that the authors provide a flow diagram in CONSORT format and include all of the information required by the CONSORT checklist within the body of the manuscript. Further, the journal requires that authors deposit their high-throughput microarray data, including mRNA, miRNA, and genomic DNA (arrayCGH, ChIP-chip, and SNP) arrays into a public database.
FAIRsharing.gt5caz	Minimum Information about a Protein Affinity Reagent	MIAPAR	MIAPAR is intended to be used as a guideline for experimentalists who wish to unambiguously describe protein affinity reagents and their protein targets (including but not limited to Ab/Ag interactions). It specifies the minimum amount of information which should be present, or directly traceable, in any publication, database entry or commercial catalogue describing either the production or use of affinity reagents such as antibodies, aptamers, protein scaffolds etc. The Minimum Information about a Protein Affinity Reagent MIAPAR is available for public comment.
FAIRsharing.gt5K7W	Vocabulary of Heat Transfers	None	Controlled vocabulary used for indexing bibliographical records dealing with “Classical Thermodynamics / Heat Transfers” in the PASCAL database (1972 à 2015). This vocabulary reflects the content of the indexed articles, including the experimental and/or theoretical context in which the heat transfer phenomena were studied. The resource is aligned with Rameau and LCSH. It consists of 1462 entries in 2 languages (English, French) grouped under 7 collections.
FAIRsharing.gtah3b	Policy for Sharing of Data Obtained in US National Institutes of Health Supported or Conducted Genome-Wide Association Studies	NIH GWAS Sharing Policy	Policy for accessing the individual level genomic data distributed through the dbGaP database.
FAIRsharing.gVJjIW	NeuroNames	NN	The NeuroNames ontology is designed to accommodate all of the English and Latin names (words and multiword terms) used by neuroscientists to reference all neuroanatomic concepts (word definitions and images) in the neuroscience literature of the last 50 years. Every name is classified as either a standard name or a synonym for the concept it represents. Some synonyms (multiple names for the same structure) are also homonyms (same name for different structures). Later the names for approximately 1000 structures encountered in neuroanatomic textbooks of six other languages were incorporated: French, German, Italian, Indonesian, Russian, and Spanish. Since 1992, the entire NeuroNames name set has been a regularly updated Source Vocabulary for the National Library of Medicine’s Unified Medical Language System under the abbreviation NN-. PubMed uses the synonym lists of NeuroNames to retrieve abstracts of articles in which authors have used different names for a structure than the search term submitted by the user.
FAIRsharing.gvr3p6	Educational Cluster	APAEDUCLUSTER	APA Educational Cluster, URI based ontology load
FAIRsharing.gvtct	Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission	None	Genes & Development requires that all data and supporting data sets from a publication be made available to the broader community from the date of publication. This should be done through publicly available data sets, when available, or through the Genes & Development website. When using public databases, the entry name/ID or accession number must be referred to in the Materials & Methods section of the paper. This policy document provides a list of public databases and resources serves as an introductory guide to data submission and appropriate nomenclature for authors contributing to Genes & Development. However, this list should not be considered to be comprehensive. If there is an additional database or resource not listed here that would be of use to authors, please contact us.
FAIRsharing.GWDS6L	PeerJ Data and Materials Sharing Policies	None	These are the journal requirements for data deposition and sharing. There are other sections on that page which are also relevant here, most substantially: https://peerj.com/about/policies-and-procedures/#study-guidelines and https://peerj.com/about/policies-and-procedures/#discipline-standards
FAIRsharing.GWEIFA	ASLS - Landform classifiers	landform	Machine-readable representation of the classifiers described in chapter 5 Landform, by J.G. Speight, in Australian soil and land survey field handbook (3rd edn). In this technique for describing landforms, the whole land surface is viewed as a mosaic of tiles of odd shapes and sizes. The scheme is intended to produce a record of observations rather than inferences. The data was converted from the print representation to this linked-data form by Linda Gregory assisted by Simon J D Cox.
FAIRsharing.gwyrzg	Aptamer Base	Aptamer Base	Aptamer Base, a database that provides detailed, structured information about the experimental conditions under which aptamers were selected and their binding affinity quantified. The open collaborative nature of the Aptamer Base provides the community with a unique resource that can be updated and curated in a decentralized manner, thereby accommodating the ever evolving field of aptamer research. The Aptamer Base homepage is currently unavailable, and until we have more information from the resource, this record has been marked as uncertain.
FAIRsharing.gX56qR	CowpeaMine	CowpeaMine	CowpeaMine integrates genomic and genetic data for cowpea, Vigna unguiculata. It is built from the LIS tripal.chado database as well as data from publications.
FAIRsharing.Gzattg	Civic Learning, Engagement, and Action Data Sharing	CivicLEADS	Researchers from a wide variety of disciplines study civic education, civic action, and the many relationships between the two. Civic Learning, Engagement, and Action Data Sharing (CivicLEADS) provides infrastructure for researchers to share and access high-quality datasets which can be used to study civic education and involvement. Funded by a grant from the Spencer Foundation and part of ICPSR's Education and Child Care Data Archives at the University of Michigan, CivicLEADS provides a centralized repository for this multi-disciplinary research area, with data being created across education, political science, developmental sciences, and other disciplines. Researchers can access quantitative and qualitative data on a broad range of topics for secondary analysis as well as sharing their own primary research data. CivicLEADS includes datasets from other ICPSR archives and seeks out emerging data collected by studies still in the field. Beyond facilitating the sharing and discovery of data, CivicLEADS seeks to create a learning community around civic education and engagement research. We strive to form relationships with and between investigators and researchers at every level—from students to emeriti faculty. Data shared in this archive have been documented with thorough metadata, and tools drawing upon these metadata allow researchers to explore and compare variables both within and between studies. By providing tutorials, webinars, and in-person training, CivicLEADS connects researchers with data and facilitates the future of civic education and civic action research.
FAIRsharing.h0can5	Diagnosis Ontology of Clinical Care Classification	DOCCC	Diagnosis Ontology of Clinical Care Classification (CCC)
FAIRsharing.h0dobn	DataLink	DataLink	The DataLink specification defines mechanisms for connecting metadata about discovered datasets to the data, related data products, and web services that can act upon the data. DataLink is a data access protocol in the IVOA architecture whose purpose is to provide a mechanism to link resources found via one service to resources provided by other services. The web service capability supports a drill-down into the details of a specific dataset and provides a set of links to the dataset file(s) and related resources. This specification also includes a VOTable-specific method of providing descriptions of one or more services and their input(s), usually using parameter values from elsewhere in the VOTable document. Providers are able to describe services that are relevant to the records (usually datasets with identifiers) by including service descriptors in a result document.
FAIRsharing.h1drng	Tagged Image File Format	None	A tag-based file format for storing and interchanging raster images.
FAIRsharing.h1gmb7	Durum Wheat	DURUM_WHEAT	The durum wheat ontology (DURUM_WHEAT) is dedicated to the sustainability analysis of the durum wheat chain. Current data available on this ontology concern durum wheat quality control criteria used in different countries (Moisture content rate, chemical content, etc.).
FAIRsharing.h1v36j	Using Phenotype Ontologies in GVF	GVF Guidelines	This guideline describes a set of best practices when using phenotype ontologies to annotate genomic variant files using Genome Variation Format (GVF) and the Sequence Ontology.
FAIRsharing.h28cg4	American Chemical Society - Nano Letters - Guidelines for Authors	ACS - NL Policy	Nano Letters invites original reports of fundamental research in all branches of the theory and practice of nanoscience and nanotechnology. The Guidelines for Authors provides information on submission and preparation of manuscripts, and general editorial policies for the journal.
FAIRsharing.h2v2ye	GBIF Mauritania IPT - GBIF Belgium	MrBIF IPT - GBIF Belgium	The Belgium Biodiversity Platform hosts this data repository on behalf of GBIF Mauritania (MrBIF) in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). More specifically, MrBIF aims to promote, coordinate and facilitate data sharing and dissemination; undertake surveys of potential biodiversity data publishers and data users; promote publication and use of biodiversity data; formulate and implement policies on biodiversity conservation; train young scientists and decisions makers; and acquire IT materials, stable Internet access and reliable power supply.
FAIRsharing.H3pwqc	RNA Atlas of Structure Probing	RASP	RASP (RNA Atlas of Structure Probing) is build from 161 deduplicated transcriptome-wide RNA secondary structures from datasets culled from 38 papers. RASP covers 18 species across animals, plants, bacteria, fungi, and also viruses, and categorizes 18 experimental methods including DMS-seq, SHAPE-Seq, SHAPE-MaP, and icSHAPE, etc. Specially, RASP curates the up-to-date datasets of several RNA secondary structure probing studies for the RNA genome of SARS-CoV-2, the RNA virus that caused the on-going COVID-19 pandemic. RASP also provides a user-friendly interface to query, browse, and visualize RNA structure profiles, offering a shortcut to accessing RNA secondary structures grounded in experimental data.
FAIRsharing.h3tjtr	Comparative Toxicogenomics Database	CTD	The Comparative Toxicogenomics Database (CTD) advances understanding of the effects of environmental chemicals on human health. Biocurators manually curate chemical-gene, chemical-disease, and gene-disease relationships from the scientific literature. This core data is then internally integrated to generate inferred chemical-gene-disease networks. Additionally, the core data is integrated with external data sets (such as Gene Ontology and pathway annotations) to predict many novel associations between different data types. A unique and powerful feature of CTD is the inferred relationships generated by data integration that helps turn knowledge into discoveries by identifying novel connections between chemicals, genes, diseases, pathways, and GO annotations that might not otherwise be apparent using other biological resources.
FAIRsharing.h4etg	VIRsiRNAdb	VIRsiRNAdb	VIRsiRNAdb contains information on experimentally validated Viral siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.
FAIRsharing.H4mrHs	Simulation Data Access Layer	SimDAL	The Simulation Data Access Layer protocol (SimDAL) defines a set of resources and associated actions to discover and retrieve simulations and numerical models in the Virtual Observatory. SimDAL and the Simulation Data Model are dedicated to cover the needs for the publication and retrieval of any kind of simulations: N-body or MHD simulations, numerical models of astrophysical objects and processes, theoretical synthetic spectra, etc... SimDAL is divided in three parts. First, SimDAL Repositories store the descriptions of theoretical projects and numerical codes. They can be used by clients to discover theoretical services associated with projects of interest. Second, SimDAL Search services are dedicated to the discovery of precise datasets. Finally, SimDAL Data Access services are dedicated to retrieve the original simulation output data, as plain raw data or formatted datasets cut-outs. To manage any kind of data, eventually large or at high-dimensionality, the SimDAL standard lets publishers choose any underlying implementation technology.
FAIRsharing.h4rs6h	go-plus	GO-PLUS	"go-plus" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://geneontology.org. This text was generated automatically. If you work on the project responsible for "go-plus" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.h5epxm	Daphnia Water Flea Genome Database	wFleaBase	wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and Daphnia magna, because of the broad set of genomic tools that have already been developed for these animals.
FAIRsharing.h6c48k	KEGG Mark-up Language	KGML	The KEGG Markup Language (KGML) is an exchange format of the KEGG pathway maps, which is converted from internally used KGML+ (KGML+SVG) format. KGML enables automatic drawing of KEGG pathways and provides facilities for computational analysis and modeling of gene/protein networks and chemical networks.
FAIRsharing.h6enr1	Mouse Phenome Database	MPD	Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public sources. MPD has three major types of strain-centric data sets: phenotype strain surveys, SNP and variation data, and gene expression strain surveys.
FAIRsharing.h87prx	IPD-KIR - Killer-cell Immunoglobulin-like Receptors	IPD-KIR	The database provides a centralised repository for human KIR sequences. Killer-cell Immunoglobulin-like Receptors (KIR) have been shown to be highly polymorphic at the allelic and haplotypic level. KIRs are members of the immunoglobulin superfamily (IgSF) formerly called Killer-cell Inhibitory Receptors. They are composed of two or three Ig-domains, a transmembrane region and cytoplasmic tail which can in turn be short (activatory) or long (inhibitory). The Leukocyte Receptor Complex (LRC) which encodes KIR genes has been shown to be polymorphic, polygenic and complex like the MHC.
FAIRsharing.h94kv6	Medical image simulation	OntoVIP	The OntoVIP ontology was developed in the context of the Virtual Imaging Platform project (VIP), a french project supported by ANR (ANR-09-COSI-03 grant) aiming at sharing medical image simulation resources. This ontology describes the content of the models used in medical image simulation. This ontology can be used to annotate such models in order to highlight the different entities that are present in the 3D scene to be imaged, i.e. anatomical structures, pathological structures, foreign bodies, contrast agents etc. The model allows also to associate to these entities information about their physical qualities, which are used in the medical image simulation process (to mimick physical phenomena involved in CT, MR, US and PET imaging). This ontology partly relies on the OntoNeuroLOG ontology (ONL-DP ONL-MR-DA), as well as PATO, RadLex, FMA and ChEBI.
FAIRsharing.h9g5pe	Protein Affinity Reagent eXtensible Markup Language	PSI-PAR XML	The work on PSI-PAR was initiated as part of the ProteomeBinders project and carried out by EMBL-EBI and the PSI-MI work group. The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparison, exchange and verification. For detailed information on all PSI activities, please see PSI Home Page. The PSI-PAR format is a standardized means of representing protein affinity reagent data and is designed to facilitate the exchange of information between different databases and/or LIMS systems. PSI-PAR is not a proposed database structure. The PSI-PAR format consists of the PSI-MI XML2.5 schema (originally designed for molecular interactions) and the PSI-PAR controlled vocabulary. In addition, PSI-PAR documentation and examples are available on this web page. The scope of PSI-PAR is PAR and target protein production and characterization.
FAIRsharing.h9gdcb	Tumor model repositories Markup Language	TumorML	Originally developed as part of the FP7 Transatlantic Tumor Model Repositories project, TumorML has been developed as an XML-based domain-specific vocabulary that includes elements from existing vocabularies, to deal with storing and transmitting existing cancer models among research communities.
FAIRsharing.haj4pr	Binary Probe Map Format	BPMAP	The BPMAP file contains information relating to the design of the Affymetrix tiling arrays. The format of the BPMAP file is a binary file with data stored in big-endian format.
FAIRsharing.hbbtbj	Colibri	Colibri	Its purpose is to collate and integrate various aspects of the genomic information from E. coli, the paradigm of Gram-negative bacteria. Colibri provides a complete dataset of DNA and protein sequences derived from the paradigm strain E. coli K-12, linked to the relevant annotations and functional assignments. It allows one to easily browse through these data and retrieve information, using various criteria (gene names, location, keywords, etc.).
FAIRsharing.hbh5mk	Human Physiome Field Markup Language	FieldML	FieldML is a declarative language for building hierarchical models represented by generalized mathematical fields. FieldML is developed as a data model and accompanying API. FieldML can be used to represent the dynamic 3D geometry and solution fields from computational models of cells, tissues and organs. It enables model interchange for the bioengineering and general engineering analysis communities. Example uses are models of tissue structure, the distribution of proteins and other biochemical compounds, anatomical annotation, and other biological annotation.
FAIRsharing.Hbvvle	BpForms Grammar	BpForms Grammar	The BpForms Grammar extends the IUPAC/IUBMB notation commonly used to represent unmodified DNA, RNA, and proteins to describe non-canonical forms of DNA, RNA, and proteins. Features include the representation of a wider range of monomeric forms, including monomeric forms that are not described in pre-defined alphabets; left and right caps such as 5' caps; intrastrand crosslinks (additional bonds between non-adjacent monomeric forms); nicks (absence of a bond between adjacent monomeric forms); and linear and circular topologies of polymers. BpForms has concrete semantics for generating molecular structures from its compressed representation of sequences of monomeric forms. The BpForms grammar is defined in Lark syntax , which is based on EBNF syntax
FAIRsharing.hbwfep	Minimal Information for Protein Functional Evaluation	MIPFE	Reporting requirements for the evaluation of recombinant protein functionality – MIPFE version 0.1. Please note: We cannot find an up-to-date website for this resource. As such, we have marked it as Uncertain. Please contact us if you have any information on the current status of this resource.
FAIRsharing.hcr23j	Biospecimens/Biorepositories: Rare Disease Hub	RD-HUB	The Biospecimens/Biorepositories Website: Rare Disease-HUB (RD-HUB) contains a searchable database of biospecimens collected, stored, and distributed by biorepositories in the United States and around the globe. RD-HUB is designed to help and assist interested parties and investigators search, locate, and identify desired biospecimens needed for the research and to facilitate collaboration and sharing of material and data among investigators across the globe.
FAIRsharing.hd23gm	Nature Genetics - Reporting standards and availability of data, materials, code and protocols	None	Nature Genetics - Reporting standards and availability of data, materials, code and protocols is a policy requiring authors to make materials, data, code, and associated protocols promptly available to readers without undue qualifications. Journals adhering to this policy recommend 1) the resources listed directly within this record, and 2) all resources listed in this record's parent policies (see the "extends" relationship). 
FAIRsharing.hD7sXQ	Brainstem Connectome	BC	Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.
FAIRsharing.he57v1	Nature Publishing Group - Nature Photonics - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.hESBcy	Genomic Expression Archive	GEA	Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design.
FAIRsharing.hezt3h	DOMMINO: A comprehensive database of macromolecular interactions	None	Database of MacroMolecular INteractions
FAIRsharing.hfgman	.ACE format	.ACE format	The ACE file format is a specification for storing data about genomic contigs. The original ACE format was developed for use with Consed, a program for viewing, editing, and finishing DNA sequence assemblies. ACE files are generated by various assembly programs, including Phrap, CAP3, Newbler, Arachne, AMOS (sequence assembly) (more specifically Minimo) and Tigr Assembler v2.
FAIRsharing.hfm1sk	National Archive of Data on Arts and Culture	NADAC	The National Archive of Data on Arts and Culture (NADAC) is a repository that facilitates research on arts and culture by acquiring data, particularly those funded by federal agencies and other organizations, and sharing those data with researchers, policymakers, people in the arts and culture field, and the general public.
FAIRsharing.hg2xzw	GABI-Kat SimpleSearch	GABI-Kat	T-DNA insertions in Arabidopsis and their flanking sequence tags.
FAIRsharing.HGB4cF	Extracorporeal Life Support Organization Registry	ELSO Registry	The Extracorporeal Life Support Organization (ELSO) is providing the ExtraCorporeal Membrane Oxygenation (ECMO) in COVID-19 website as a resource for centers who may be called on to manage COVID-19 patients.
FAIRsharing.hgnk8v	Sample Tabular Format	SampleTab	The BioSamples Database uses the SampleTab file format for submissions. This is a tab-delimited file that can be created in many spreadsheet editing software packages (e.g. Microsoft Excel). Although SampleTab files can have some advanced features, they can be written by users from a wide range of backgrounds using tools they are already familiar with. The SampleTab format has a number of advanced features for power users, such as ontology mappings, anonymous groups, and UTF-8 character encoding. Although this format is still accepted, the administrators of the BioSamples Database recommend that all submissions to BioSamples be made in JSON via our JSON API.
FAIRsharing.hgrpah	NRG-CING	NRG-CING	Validated NMR structures of proteins and nucleic acids.
FAIRsharing.hgsFLe	Darwin Core Germplasm	DwC-germplasm	The Darwin Core germplasm extension (DwC-germplasm) was developed to provide a bridge between the established standards in use by the genebank community for plant genetic resources for food and agriculture (PGRFA) and the standards maintained by the Biodiversity Information Standards/Taxonomic Databases Working Group (TDWG). The DwC-germplasm provides an extension to the Darwin Core standard of the TDWG for occurrences. Darwin Core can be seen as an extension to the Dublin Core Metadata Data Initiative (DCMI) terms.
FAIRsharing.hjxSpv	SuperDRUG2 - A One Stop Resource for Approved/Marketed Drugs	SuperDRUG2	SuperDRUG2, an update of the previous SuperDrug database, is a unique, one-stop resource for approved/marketed drugs, containing more than 4,600 active pharmaceutical ingredients. Drugs are annotated with regulatory details, chemical structures (2D and 3D), dosage, biological targets, physicochemical properties, external identifiers, side-effects and pharmacokinetic data. Different search mechanisms allow navigation through the chemical space of approved drugs. A 2D chemical structure search is provided in addition to a 3D superposition feature that superposes a drug with ligands already known to be found in the experimentally determined protein-ligand complexes. For the first time, we introduced simulation of "physiologically-based" pharmacokinetics of drugs. Our interaction check feature not only identifies potential drug-drug interactions but also provides alternative recommendations for elderly patients. Drug structures (2D and 3D), links to external registries (e.g. WHO ATC) and drug/compound databases (e.g. DrugBank, ChEMBL, PubChem), physicochemical properties are provided for download.
FAIRsharing.hjybww	Ligand-Gated Ion Channel database	LGICdb	The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.
FAIRsharing.hknw3k	US National Institutes of Health Genomic Data Sharing Policy	NIH Genomic Data Sharing Polic	The GDS Policy applies to all NIH-funded research (e.g., grants, contracts, intramural research) that generates large-scale human or non-human genomic data, regardless of the funding level, as well as the use of these data for subsequent research. Large-scale data include genome-wide association studies (GWAS), single nucleotide polymorphisms (SNP) arrays, and genome sequence, transcriptomic, epigenomic, and gene expression data. Supplemental Information to the GDS Policy provides examples of genomic research projects that are subject to the Policy.
FAIRsharing.hLKD2V	VizieR astronomical catalogue database	VizieR	VizieR is a library of published astronomical catalogues --tables and associated data-- with verified and enriched data, accessible via multiple interfaces. Query tools allow the user to select relevant data tables and to extract and format records matching given criteria. To be deposited within VizieR, data must be related to a publication in a refereed journal, either as tables or catalogues actually published, or as a paper describing the data and their context. VizieR is certified by the CoreTrustSeal. DOI: 10.26093/cds/vizier
FAIRsharing.hm0s3e	Therapeutically Relevant Multiple Pathways Database	TRMP	The Therapeutically Relevant Multiple Pathways Database is designed to provide information about such multiple pathways and related therapeutic targets described in the literatures, the targeted disease conditions, and the corresponding drugs/ligands directed at each of these targets. This resource has been marked as Uncertain because its project home can no longer be found either with a general search or on the founding group's website at http://bidd.group/group/about.htm. Please get in touch if you have any information about this resource.
FAIRsharing.hm1mfg	Archaeology Data Service	ADS	The Archaeology Data Service (ADS) supports research, learning and teaching with freely available, high quality and dependable digital resources. The ADS promotes good practice in the use of digital data in archaeology, it provides technical advice to the research community, and supports the deployment of digital technologies.
FAIRsharing.hmb1f4	NONCODE	NONCODE	NONCODE is a database of noncoding RNAs (except tRNAs and rRNAs), including long noncoding (lnc) RNAs. Information contained within the database includes human lncRNA–disease relationships and single nucleotide polymorphism-lncRNA–disease relationships; human exosome lncRNA expression profiles; and predicted RNA secondary structures of human transcripts. This resource has not been updated since 2017, and therefore its status has been marked as Uncertain. Please get in touch if you have any information about the current status of this resource.
FAIRsharing.hmhzhy	CNO_NAME	CNO_ACRONYM	test
FAIRsharing.hn155r	Multi-Crop Passport Descriptors	MCPD	The List of Multi-Crop Passport Descriptors (MCPD) is a reference tool developed jointly by IPGRI and FAO to provide international standards to facilitate germplasm passport information exchange across crops. These descriptors aim to be compatible with IPGRI crop descriptor lists and with the descriptors used for the FAO World Information and Early Warning System (WIEWS) on plant genetic resources (PGR). This revised version (December 2001) of the 1997 MCPD List, provides a brief explanation of content, coding scheme and suggested fieldnames for each descriptor to assist in the computerized exchange of this type of data.
FAIRsharing.hn4mwm	NIDA Center on Genetics Studies	NIDA CGS	This resource stores and distributes clinical data and biomaterials (DNA samples and cell lines) available in the NIDA Genetics Initiative. This includes blood and other biospecimens along with phenotypic data.
FAIRsharing.HO0DyR	Animal Quantitative Trait Loci (QTL) Database	Animal QTLdb	The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes, in order to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features such as annotated genes.
FAIRsharing.hp9s46	Climate and Forecast metadata conventions	CF metadata convention	Climate and Forecast metadata conventions define metadata that provide a definitive description of what the data in each variable represents, and the spatial and temporal properties of the data. This enables users of data from different sources to decide which quantities are comparable, and facilitates building applications with powerful extraction, regridding, and display capabilities. The CF conventions generalise and extend the COARDS conventions
FAIRsharing.hpmpyx	Cancer Chemoprevention Ontology	CanCO	The Cancer Chemoprevention Ontology constitutes a vocabulary that is able to describe and semantically interconnect the different paradigms of the cancer chemoprevention domain.
FAIRsharing.hpyy7d	Knottin database	KNOTTIN	The KNOTTIN database provides standardized data on the knottin structural family (also referred to as the "Inhibitor Cystine Knot (ICK) motif/family/fold").
FAIRsharing.hq12h8	NERC Data Policy	NERC Data Policy	NERC-funded scientists must make their data openly available within two years of collection and deposit it in a NERC data centre for long term preservation. The aim is that all NERC-funded data are managed and made available for the long-term for anybody to use without any restrictions.
FAIRsharing.hqyeb7	Fire Ontology	FIRE	The ontology of Fire was created in order to represent the set of concepts about the fire occurring in natural vegetation, its characteristics, causes and effects, with focus on Cerrado vegetation domain. The fire plays a determinant role on the structure and composition of Cerrado physiognomies.
FAIRsharing.hra50k	Nature - Reporting standards and availability of data, materials, code and protocols	None	Springer Nature Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.hren8w	American Society of Testing and Materials - Standards Repository	ASTM Standards	The American Society of Testing and Materials - Standards (ASTM Standards) provides an online repository of all ASTM standards, which are used worldwide to improve product quality, enhance safety and facilitate trade. These standards are accessible via a subscription model or can be individually purchased.
FAIRsharing.hrM7RP	Arctic Permafrost Geospatial Centre	APGC	The Arctic Permafrost Geospatial Centre (APGC) provides open access to geospatial permafrost data from the Arctic. APGC contains metadata descriptions and visualizations, and links out to the data stored by the publishing data repository. APGC also invites submissions from both individual users as well as project consortiums.
FAIRsharing.hrttzm	MetaImage	MHA/MHD	The MHA file extension is related to MetaImage is a special medicine image format used in the Insight Segmentation and Registration Toolkit (ITK). MetaImage is a text-based tagged file format for medical images.
FAIRsharing.hs43fc	Fish Ontology	FISHO	This Fish Ontology is an ontology created as how the author views the fish structure following the book "The Diversity of Fishes: Biology, Evolution and Ecology" as the main reference, which covers one part of view on ichthyology, with an emphasis on diversity and adaptation. This ontology is created with the mindset of categorizing fish automatically based on the attributes and terms mined from the fish specimen. Most of the basic organization from this ontology follows Nelson's research due to its synthetic and broad approach, while recognizing that Nelson's conclusions are one of many alternative interpretations of the literature, which is mostly agreed by our main references, and many fish and fisheries researchers. Most of the classification used in this ontology is in no means completed and just following the recent classification provided by the books For now our work focused more on two group of fish which is early jawless fish, and advanced jawed fishes. The classification from both of this group are structured following the reference.
FAIRsharing.hs4d6r	miRandola: extracellular circulating RNAs database	miRandola	The miRandola database is the first resource for extracellular circulating RNAs. The first version of the database has been published on Plos One in 2012. It mainly contains information on circulating microRNAs and other non-coding RNAs. It is manually curated and constantly updated by the authors (usually once a year). We have extracted data from PubMed papers and Exocarta (a database that collects data regarding exosomes). We report information on methods of RNA extraction and qualification, diseases, experimental description, expression data and the potential biomarker role. We are updating the database with other RNAs and the future direction is to have a portal for all the non invasive biomarkers such as cell free DNA and circulating tumor cells.
FAIRsharing.hsbpf9	Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition	None	A detailed description of the editorial policies for the Journal Of Experimental Medicine with respect to data sharing and data deposition.
FAIRsharing.hsy066	Online GEne Essentiality database	OGEE	Online GEne Essentiality database
FAIRsharing.hsyjka	National Database for Autism Research	NDAR	National Database for Autism Research (NDAR) is an extensible, scalable informatics platform for austism spectrum disorder-relevant data at all levels of biological and behavioral organization (molecules, genes, neural tissue, behavioral, social and environmental interactions) and for all data types (text, numeric, image, time series, etc.). NDAR was developed to share data across the entire ASD field and to facilitate collaboration across laboratories, as well as interconnectivity with other informatics platforms.
FAIRsharing.ht22t4	Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments	MISFISHIE	MISFISHIE is the Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments. This specification details the minimum information that should be provided when publishing, making public, or exchanging results from visual interpretation-based tissue gene expression localization experiments such as in situ hybridization, immunohistochemistry, reporter construct genetic experiments (GFP/green fluorescent protein, β-galactosidase), etc. Compliance to this standard is expected to provide researchers at other labs enough information to reproduce the experiment and/or to fully evaluate the data upon which results are based.
FAIRsharing.htq39f	COMODI	COMODI	An ontology to characterise differences in versions of computational models in biology
FAIRsharing.httzv2	Movebank Data Repository	MDR	This data repository allows users to publish animal tracking and animal-borne sensor datasets that have been uploaded to Movebank (https://www.movebank.org). Published datasets have gone through a submission and review process, and are associated with a peer-reviewed journal article or other published report. All animal tracking data in this repository are available to the public.
FAIRsharing.htx8tt	Minimum Information about a Cardiac Electrophysiology Experiment	MICEE	Minimum Information about a Cardiac Electrophysiology Experiment (MICEE) is a reporting standard developed by an international group of leading experimental teams comprising an explicit minimum set of information deemed necessary for reproduction and utilization of published cardiac experimental electrophysiology research. The concept is that upon publication, data annotated according to the MICEE standard will be deposited by investigators in an online repository, with links provided in related publications.
FAIRsharing.htzwqf	PASS2	PASS2	PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic version of the original superfamily alignment database, CAMPASS (CAMbridge database of Protein Alignments organised as Structural Superfamilies). PASS2 contains alignments of protein structures at the superfamily level and is in direct correspondence with SCOPe 2.04 release.
FAIRsharing.HU7Kz2	CDISC Questionnaires, Ratings and Scales	CDISC QRS	CDISC develops SDTM (tabulation) and ADaM (analysis) QRS supplements that provide information on how to structure the data in a standard format for public domain and copyright-approved instruments. An instrument is a series of questions, tasks or assessments used in clinical research to provide a qualitative or quantitative assessment of a clinical concept or task-based observation. Controlled Terminology is also developed to be used with the supplements.
FAIRsharing.hve0ac	Matter Transfer Ontology	TRANSMAT	The Matter Transfer ontology is dedicated to matter transfer (eg O2, CO2, H2O) and mechanical properties of materials especially with respect to food, bacteria and packaging fields.
FAIRsharing.hvecpt	Ocean Biodiversity Information System USA IPT - USGS	OBIS-USA - USGS	OBIS-USA brings together marine biological occurrence data – recorded observations of identifiable marine species at a known time and place, collected primarily from U.S. Waters or with U.S. funding. OBIS-USA is part of an international data sharing network (Ocean Biodiversity Information System, OBIS) coordinated by the Intergovernmental Oceanographic Commission, part of UNESCO.
FAIRsharing.hw0jjd	UCL Child Open Health Research	None	This is a non-exhaustive list of databases, standards, and policies that have been approved for a UCL Child Health Open Research article.
FAIRsharing.hw3bh2	OWL-Time	TIME	OWL-Time is an OWL-2 DL ontology of temporal concepts, for describing the temporal properties of resources in the world or described in Web pages. The ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. Time positions and durations may be expressed using either the conventional (Gregorian) calendar and clock, or using another temporal reference system such as Unix-time, geologic time, or different calendars.
FAIRsharing.hw5gr6	Regional Healthcare System Interoperability and Information Exchange Measurement Ontology	HEIO	The purpose of this ontology is to develop a model for regional healthcare system interoperability and information exchange quantification (measured by the electronic health information exchange (eHIE) indicator). The eHIE is hypothesized as a leading measure of regional healthcare system integration. A publication associated with this ontology is currently under review.
FAIRsharing.hwx5xr	GBIF Guinea IPT - GBIF France	None	GBIF France hosts this data repository on behalf of GBIF Guinea in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). GBIF-GUINEE is established within the Centre d'Observation de Surveillance et d'Information Environnementales (COSIE) , the signatory of the GBIF Memorandum of Understanding, as a specialized team working on the collection of biodiversity occurrence data from data publishers to enable their publication on the Internet. The node of GBIF-GUINEE is mandated to collect species occurrence data on the national and international level in order to make these available to data users and decision makers. The data collected and disseminated by COSIE enable the generation of statistics to support decision making by authorities, in order to integrate ecological considerations into programmes and plans for the socio-economic development of Guniea. These ecological considerations have the goal of protection of the environment and biological diversity.
FAIRsharing.hxvt6c	MDL molfile Format	None	An MDL Molfile is a file format for holding information about the atoms, bonds, connectivity and coordinates of a molecule. Each molfile describes a single molecular structure which can contain disjoint fragments. The V3000 molfile and V3000 rxnfile formats are the latest versions of the specification. V3000 is a superset of V2000 in a different format. A connection table (Ctab) contains information describing the structural relationships and properties of a collection of atoms. While still commonly called a molfile, the specification has changed ownership as the companies who first created and then owned the specification changed. MDL Information Systems (MDL) originally developed the format, which is currently owned by Dassault Systemes. Please note that a public, official homepage cannot be found, and therefore an alternative location has been provided.
FAIRsharing.hza1ec	Binary Alignment Map Format	BAM	BAM is the compressed binary version of the Sequence Alignment/Map (SAM) format, a compact and indexable representation of nucleotide sequence alignments. Many next-generation sequencing and analysis tools work with SAM/BAM. For custom track display, the main advantage of indexed BAM over PSL and other human-readable alignment formats is that only the portions of the files needed to display a particular region are transferred to UCSC. This makes it possible to display alignments from files that are so large that the connection to UCSC would time out when attempting to upload the whole file to UCSC. Both the BAM file and its associated index file remain on your web-accessible server (http, https, or ftp), not on the UCSC server. UCSC temporarily caches the accessed portions of the files to speed up interactive display.
FAIRsharing.HZcqfR	UniCarb-DR	UniCarb-DR	A repository of glycans with associated MS information and spectra. The repository allows researcher to submit their glycomics MS data for public display. The data is not curated by other than then data provider. Curated data will be transfered to UniCarb-DR
FAIRsharing.hzdzq8	Schema.org	Schema.org	Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet. In addition to people from the sponsoring companies, there is substantial participation by the larger web community, through public mailing lists such as public-vocabs@w3.org and through GitHub. Search engines including Bing, Google, Yahoo! and Yandex rely on schema.org markup to improve the display of search results, making it easier for people to find the right web pages.  Since April 2015, the W3C Schema.org Community Group is the main forum for schema collaboration, and provides the public-schemaorg@w3.org mailing list for discussions.
FAIRsharing.I5xHsJ	The Materials Data Facility	MDF	MDF streamlines and automates data sharing, discovery, access and analysis by: 1) enabling data publication, regardless of data size, type, and location; 2) automating metadata extraction from submitted data into MDF metadata records (i.e., JSON formatted documents following the MDF schema) using open-source materials-aware extraction pipelines and ingest pipelines; and 3) unifying search across many materials data sources, including both MDF and other repositories with potentially different vocabularies and schemas. Currently, MDF stores 60 TB of data from simulation and experiment, and also indexes hundreds of datasets contained in external repositories, with millions of individual MDF metadata records created from these datasets to aid fine-grained discovery.
FAIRsharing.iagXcR	Chemotion repository	chemotion	The Chemotion-repository is a repository for chemistry research data. The repository was founded at the Karlsruhe Institute of Technology (KIT) in Germany as a project funded by the German Research Foundation. The repository is domain specific, offering diverse functions to save and work with chemical datasets and analyse files. The DOI generation is provided by DataCite. The repository supports the storage of data related to molecules or reactions, with a focus on data from synthetic and analytic work. Data can be uploaded directly to the repository or can be added via a connector that mediates the transfer of data from the chemotion ELN (available as an Open Source) to the repository.
FAIRsharing.iBQoXf	Parameter Description Language	PDL	The Parameter Description Language (PDL) describes parameters in a rigorous data model. With no loss of generality, we will represent this data model using XML. It intends to be a expressive language for self-descriptive web services exposing the semantic nature of input and output parameters, as well as all necessary complex constraints. PDL is a step forward towards true web services interoperability.
FAIRsharing.iC6iSd	Spatio-temporal cell atlas of the human brain	STAB	STAB is a comprehensive cell atlas resource for the human brain, containing single-cell gene expression profiling of 42 cell subtypes across 20 brain regions and 11 developmental periods. With cell subtypes and their marker genes defined by a unified-pipeline, STAB resolves cell types at a finer resolution and enables one to explore the cellular compositions and transcriptome states of distinct brain regions across the development in an objective way. Furthermore, the marker genes associated with each cell subtype and the functional enrichment analysis provided by STAB make it possible to investigate the associations between cell subtypes and phenotypes of interest, e.g., neuropsychiatric disorders.
FAIRsharing.iHhPe9	XenMine	XenMine	XenMine has been created to view, search and analyze Xenopus data, and provides essential information on gene expression changes and regulatory elements present in the genome. It contains published genomic datasets from both Xenopus tropicalis and Xenopus laevis.
FAIRsharing.IIMCe0	Gene Ontology (GO) Gene Association File Format 2.0	GAF 2.0	Ontology-based annotation data can be submitted to the Gene Ontology Consortium and other projects (e.g. the Planteome project) in the Gene Association Format 2.0 (GAF 2.0). The annotation flat file format is comprised of 17 tab-delimited fields. The newer GAF 2.1 format is preferred over this older 2.0 format.
FAIRsharing.IIn0TH	LegumeMine	LegumeMine	This mine integrates data for multiple legume species. It is under development by NCGR and is built from the LIS and PeanutBase chado databases as well as exports from other sources.
FAIRsharing.iKa3Xm	Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council	None	Document for ERC grantees providing information on ERC requirements concerning Data Management Plans and data deposition (suitable repositories, metadata and data preparation). Following a general part, three separate parts provide information of specific interest to grantees in the three ERC domains (Life Sciences, Social Sciences and Humanities, Physical Sciences and Engineering).
FAIRsharing.ioEYS5	ATMODAT Standard (v3.0)	None	Within the AtMoDat project (Atmospheric Model Data), a standard has been developed which is meant for improving the FAIRness of atmospheric model data published in repositories. The ATMODAT standard includes concrete recommendations related to the maturity, publication and enhanced FAIRness of atmospheric model data. The suggestions include requirements for rich metadata with controlled vocabularies, structured landing pages, file formats (netCDF) and the structure within files. Human- and machine readable landing pages are a core element of this standard, and should hold and present discipline-specific metadata on simulation and variable level.
FAIRsharing.iUR9zW	IDG Mouse Resource Reporting Standards	None	Mouse reporting standards for the Illuminating the Druggable Genome (IDG) consortium. Reporting standards based on Mutant Mouse Resource & Research Centers (MMRRC) requirements for deposition and resource management/availability.
FAIRsharing.IUZaXe	ASLS - Land Surface classifiers	land-surface	Machine-readable representation of the classifiers described in chapter 7 Land Surface, by R.C. McDonald, R.F. Isbell and J.G. Speight, in Australian soil and land survey field handbook (3rd edn). Land surface is concerned mainly with surface phenomena affecting land use and soil development that have traditionally been noted at the point of soil observation. The data was converted from the print representation to this linked-data form by Linda Gregory and Simon J D Cox.
FAIRsharing.j01xzz	NeuroMorpho.Org species ontology	NMOSP	The species ontology of NeuroMorpho.Org was updated (OntoSearch v1.3) to map the new species and strains added in NeuroMorpho.Org v6.3 release.
FAIRsharing.j03zm4	mini Protein Data Bank Format	None	"mini Protein Data Bank Format" is a standard. This text was generated automatically. If you work on the project responsible for "mini Protein Data Bank Format" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.j09az5	ISO 19108 Temporal Objects	ISO19108TO	ISO 19108 Temporal Objects
FAIRsharing.J1aPiC	FAANG metadata analysis specification	None	The FAANG metadata analysis specification describes the specification for all analysis metadata as part of the larger FAANG metadata guidance project. Analysis metadata needs to contain the following process attributes: input data (a list of files used as input and references to the experiment records in a data archive), reference data (e.g. genome assembly or gene set), and analysis protocol (a precise description of the analysis protocol).
FAIRsharing.j1eyq2	mentha	mentha	mentha archives evidence collected from different sources and presents these data in a complete and comprehensive way. Its data comes from manually curated protein-protein interaction databases that have adhered to the IMEx consortium. The aggregated data forms an interactome which includes many organisms. mentha is a resource that offers a series of tools to analyse selected proteins in the context of a network of interactions.
FAIRsharing.j2cgnn	Autism DSM-ADI-R ontology	ADAR	The Autism DSM-ADI-R (ADAR) ontology uses SWRL rules to infer phenotypes from ADI-R items. It includes OWL class definitions representing DSM IV diagnostic criteria for autistic disorder and ASD criteria for Autism Spectrum Disorder. The goal is to create an ontology that will allow data integration and reasoning with subject data to classify subjects, and based on this classification, to infer new knowledge on Autism Spectrum Disorder (ASD) and related neurodevelopmental disorders (NDD). They extended an existing autism ontology to allow automatic inference of ASD phenotypes and Diagnostic & Statistical Manual of Mental Disorders (DSM) criteria based on subjects’ Autism Diagnostic Interview-Revised (ADI-R) assessment data.
FAIRsharing.j2dvn2	Research Councils UK Common Principles on Data Policy	None	RCUK are committed to transparency and to a coherent approach across the research base. The RCUK common principles on data policy provide an overarching framework for individual Research Council policies on data policy.
FAIRsharing.j2np9m	Menelas Project Top-Level Ontology	TOP-MENELAS	The two main goals MENELAS contributes to are to (i) Provide better account of and better access to medical information through natural languages in order to help physicians in their daily practice, and to (ii) Enhance European cooperation by multilingual access to standardised medical nomenclatures. The major achievements of MENELAS are the realisation of its two functional systems: (i) The Document Indexing System encodes free text PDSs into both an internal representation (a set of Conceptual Graphs) and international nomenclature codes (ICD-9-CM). Instances of the Document Indexing System have been realised for French, English and Dutch ; (ii) The Consultation System allows users to access the information contained in PDSs previously indexed by the Document Indexing System. The test domain for the project was coronary diseases. The existing prototype shows promising results for information retrieval from natural language PDSs and for automatically encoding PDSs into an existing classification such as ICD-9-CM. A set of components, tools, knowledge bases and methods has also been produced by the project. These include language-independent ontology and models for the domain of coronary diseases; conceptual description of the relevant ICD-9-CM codes. This ontology includes a top-ontology, a top-domain ontology and a domain ontology (Coronay diseases surgery). The menelas-top ontology here is the part of the whole ontology without any reference to medical domain.
FAIRsharing.j3y6a0	Patient-Derived tumor Xenograft Finder	PDX Finder	PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Patient-Derived Xenograph (PDX) data which provides a comprehensive global catalogue of PDX models available for researchers across distributed repository databases. Integrated views are provided for histopathological image data, molecular classification of tumors, host mouse strain metadata, tumor genomic data and metrics on tumor response to chemotherapeutics. The data model for PDX Finder is based on the minimal information standard for PDX models developed in collaboration with a broad range of stakeholders who create and/or use PDX models in basic and pre-clinical cancer research.
FAIRsharing.J3YyP9	GEOFON	GEOFON	GEOFON seeks to facilitate cooperation in seismological research and earthquake and tsunami risk mitigation by providing rapid open transnational access to seismological data and source parameters of large earthquakes, and keeping these data accessible in the long term. It pursues these aims by operating and maintaining its own global network of permanent seismic stations in cooperation with local partners, facilitating real-time access to data from this network and those of many partner networks and plate boundary observatories, and providing a FAIR archive for seismological data. It also serves as the permanent archive for the Geophysical Instrument Pool at Potsdam (GIPP). Using real-time data streams, GEOFON provides rapid automatic earthquake parametric information to the scientific community, tsunami warning centres worldwide, organizations involved in rescue operations, news media and the general public. GEOFON is one of the nodes of the European Integrated Data Archive (EIDA) and a key nodal member of the European-Mediterranean Seismological Centre (EMSC).
FAIRsharing.j45zag	H-Invitational Database	H-InvDB	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. By extensive analyses of all human transcripts, we provide curated annotations of human genes and transcripts that include gene structures, alternative splicing variants, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats) , relation with diseases, gene expression profiling, and molecular evolutionary features , protein-protein interactions (PPIs) and gene families/groups.
FAIRsharing.j4ebq1	MitoCheck	MitoCheck	MitoCheck aims to integrate information on cellular function of human genes while giving access to supporting information such as microscopy images of phenotypes.
FAIRsharing.j4encb	XEML Environment Ontology	XEO	XeO has been created to help plant scientists in documenting and sharing metadata describing the abiotic environment.
FAIRsharing.j5eden	Australian Ocean Data Network Portal	AODN	The AODN Portal provides access to all available Australian marine and climate science data and provides the primary access to IMOS data including access to the IMOS metadata. Australia’s Integrated Marine Observing System (IMOS) is enabled by the National Collaborative Research Infrastructure Strategy (NCRIS). It is operated by a consortium of institutions as an unincorporated joint venture, with the University of Tasmania as Lead Agent.
FAIRsharing.j766zb	Broad Bioimage Benchmark Collection	BBBC	The Broad Bioimage Benchmark Collection (BBBC) is a collection of freely downloadable microscopy image sets. Researchers are encouraged to use these image sets as reference points when developing, testing, and publishing new image analysis algorithms for the life sciences. In addition to the images themselves, each set includes a description of the biological application and some type of "ground truth" (expected results).
FAIRsharing.j8g2cv	Ensembl Plants	Ensembl Plants	Ensembl Plants holds the genomes of plants of significant interest. These range from those of agricultural importance, those which support primary research and of environmental interest. Ensembl Plants datasets are constructed in a direct collaboration with the Gramene resource. The resource holds the genomes of wheat, rice, corn and mouse ear cress amongst others.
FAIRsharing.j97pjn	Validated Antibody Database	VAD	Labome organizes reagent information from high quality suppliers. The reagents include antibodies, siRNA/shRNA, ELISA kits, cDNA clones, proteins/peptides, and biochemicals. To help solve the antibody quality problem, Labome manually curates antibody information from formal publications and develops Validated Antibody Database (VAD).
FAIRsharing.j98570	GreenPhylDB: A phylogenomic database for plant comparative genomics	GreenPhyl	GreenPhylDB comprises 37 full genomes from the major phylum of plant evolution. Clustering of these genomes was performed to define a consistent and extensive set of homeomorphic plant families.
FAIRsharing.j9e8qd	Protein Affinity Reagent Controlled Vocabulary	PSI-PAR CV	The scopes of molecular interactions and protein affinity reagents are largely overlapping but are also partially unique. This fact is reflected in the PSI-PAR CV, which contains the majority of the terms from the PSI-MI CV and an additional ∼200 new terms as of its creation in 2009.
FAIRsharing.j9mm09	Atlases - Pathology images	None	A collection of high resolution histological images from contributors across the Czech Republic.
FAIRsharing.ja871b	EORTC clinical trials	EORTC	European Organisation for Research and Treatment of Cancer database of clinical trials.
FAIRsharing.jb7wzc	Marine Environmental Data and Information Network checklist	MEDIN	MEDIN is a list of information that accompanies a data set and allows other people to find out what the data set contains, where it was collected and how they can get hold of it. It is a standard for marine metadata and a set of tools to create metadata records that comply with the MEDIN Metadata Standard.
FAIRsharing.jbg4kp	Minimum Information Required for a Drug Metabolism Enzymes and Transporters Experiment	MIDE	Pharmacogenomics studies are expanding exponentially, both in terms of number and amount of data generated. To facilitate future research and diagnostic applications, Affymetrix has developed a microarray targeting known genetic variations in absorption, distribution, metabolism, excretion, toxicity (ADMET) genes. The array, known as Drug Metabolising Enzymes and Transporters (DMET Plus), comprises 1,936 variants across 231genes, including 5 copy number loci involved in drug metabolism and transport. Being designed to identify genetic variants in patients presenting different drug responses and risks for adverse drug reactions, DMET constitutes a valuable tool for pharmacogenomics and clinical studies. For effective DMET data interpretation, sharing, reporting and use across the scientific community, we propose the Minimum Information required for a DMET Experiment reporting (MIDE). MIDE aims to provide reporting guidelines and describe the information required for reporting to public databases. In this article we describe MIDE and discuss its broader applications to other platforms.
FAIRsharing.jcfm02	Rockefeller University Press - Journal Of Cell Biology - Data Deposition	None	A detailed description of the editorial policies for the Journal Of Cell Biology with respect to data sharing and data deposition.
FAIRsharing.jcj3gv	Monogenean Ontology	MONO	Monogenean Ontology
FAIRsharing.jE0WcA	Drug Database for Inborn Errors of Metabolism Ontology	DDIEM Ontology	DDIEM Ontology for the Drug Database for Inborn Errors of Metabolism. The DDIEM database is a database of therapeutic strategies and treatments for inborn errors of metabolism. These strategies are classified by mechanism and outcome using the DDIEM Ontology.
FAIRsharing.jgbxr	Tox Biology Checklist	TBC	The Tox Biology Checklist was created to describe information that should be included with data derived from a biological study. The exact details of the checklist information depend on the study design and the nature of the subjects used in the study.  In broad terms, this checklist recognizes that study data can be best interpreted in context of the subject characteristics, the conditions used to treat or collect the subjects, the conditions of care and disposition, and the timeline of study execution. Please note: We cannot find an up-to-date website or official reporting guideline document for this resource. As such, we have marked its status as Uncertain. Please contact us if you have any information on the current status of this resource.
FAIRsharing.JGEjCW	The Tromsø Repository of Language and Linguistics	TROLLing	The Tromsø Repository of Language and Linguistics (TROLLing) is a repository of data, code, and other related materials used in linguistic research. The repository is open access, which means that all information is available to everyone. All postings are accompanied by searchable metadata that identify the researchers, the languages and linguistic phenomena involved, the statistical methods applied, and scholarly publications based on the data (where relevant). DataverseNO is aligned with the FAIR Guiding Principles for scientific data management and stewardship. Being part of DataverseNO, TROLLing is CoreTrustSeal certified.
FAIRsharing.jGj1ly	IDG Cell Resource Reporting Standards	None	Cultured cell reagent resource reporting standards for the Illuminating the Druggable Genome (IDG) consortium.
FAIRsharing.jgzts3	NIfTI-1 Data Format	NIFTI	The Neuroimaging Informatics Technology Initiative (nifti) file format was envisioned about a decade ago as a replacement to the then widespread, yet problematic, analyze 7.5 file format. The main problem with the previous format was perhaps the lack of adequate information about orientation in space, such that the stored data could not be unambiguously interpreted. Although the file was used by many imaging software projects, the lack of adequate information on orientation obliged some, most notably spm, to include, for every analyzed file, an accompanying file describing the orientation, such as a file with extension .mat.
FAIRsharing.jh4xht	Semantic Web for Earth and Environment Technology Ontology	SWEET	The Semantic Web for Earth and Environmental Terminology is a mature foundation ontology originally developed at the NASA Jet Propulsion Laboratory. Containing over 6000 concepts organized into 200 ontologies, its top-level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), and Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). Since 2017, SWEET has been under the governance of the ESIP foundation.
FAIRsharing.jhfs8q	Integrated Pathway Analysis and Visualization System	IPAVS	iPAVS provides a collection of highly-structured manually curated human pathway data, it also integrates biological pathway information from several public databases and provides several tools to manipulate, filter, browse, search, analyze, visualize and compare the integrated pathway resources.
FAIRsharing.jhjnp0	Database of local DNA conformers	Dolce	Dolce is a database of DNA structure motifs based on an automatic classification method consisting of the combination of supervised and unsupervised approaches. This workflow has been applied to analyze 816 X-ray and 664 NMR DNA structures released till February 2013. Dinucleotides with unassigned conformations are either classified into one of already known 24 classes or into one of six new classes among so far unclassifiable data, which were newly identified and annotated among X-ray structures by authors of this tool.
FAIRsharing.jIiytY	Open Data Certificate	None	Open Data Certificate is a free online tool developed and maintained by the Open Data Institute, to assess and recognise the sustainable publication of quality open data. It assess the legal, practical, technical and social aspects of publishing open data using best practice guidance.
FAIRsharing.jj4n9f	Solanaceae Phenotype Ontology	SPTO	Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance.
FAIRsharing.jjka8c	Knowledge Network for Biocomplexity	KNB	The Knowledge Network for Biocomplexity (KNB) is an international repository intended to facilitate ecological and environmental research. KNB was created to share, discover, access and interpret complex ecological data. Contextual information provided with KNB data allows scientists to integrate and analyze data. The data originate from a highly-distributed set of field stations, laboratories, research sites, and individual researchers. The foundation of the KNB is the detailed metadata provided by researchers, which promotes both automated and manual integration of data into new projects. As part of the KNB effort, data management software is developed in a free and open source manner, so other groups can build upon the tools. The KNB is powered by the Metacat data management system, and is optimized for handling data sets described using the Ecological Metadata Language, but can store any XML-based metadata document.
FAIRsharing.jkj6ah	Tissue Microarray Ontology	TMA	Tissue microarrays (TMA) are enormously useful tools for translational research, but incompatibilities in database systems between various researchers and institutions prevent the efficient sharing of data that could help realize their full potential.
FAIRsharing.jkt8ye	i2b2-patient_visit_dimensions	i2b2-patvisdims	This database is a tool for describing patient information and facts such as patient health history, diagnosis, medication etc...This is supported by the i2b2 software. Datasets are gathered from a variety of sources. The i2b2 team merged with the TranSMART Foundation in 2017.
FAIRsharing.jLpL6i	FAIR Metrics - Use a Knowledge Representation Language	FM-I1	FM-I1 provides a metric for the use of a formal, accessible, shared, and broadly applicable language for knowledge representation. The unambiguous communication of knowledge and meaning (what symbols are, and how they relate to one another) necessitates the use of languages that are capable of representing these concepts in a machine-readable manner. To this end, a URL to the specification of the language must be provided. This metric applies to part I1 of the FAIR Principles.
FAIRsharing.jm8fzm	Human Endogenous Retrovirus database	HERVd	This database is compiled from the human genome nucleotide sequences obtained mostly in the Human Genome Projects. The database makes it possible to continuously improve classification and characterization of retroviral families. The HERV database now contains retroviruses from more than 90 % of the human genome.
FAIRsharing.jmg2st	Neuroscience Information Framework Cell	NIFCELL	NIF has developed a comprehensive vocabulary for annotating and searching neuroscience resources.
FAIRsharing.jnzrt	Project Tycho: Data for Health	Project Tycho	In 2013, we released the first version of Project Tycho containing weekly case counts for 50 notifiable conditions reported by health agencies in the United States for 50 states and 1284 cities between 1888 and 2014. Over the past four years, over 3700 users have registered to use Project Tycho data for a total of 40 creative works including peer-reviewed research papers, visualizations, online applications, and newspaper articles. Project Tycho 2.0 has expanded its scope to a global level and improved standardization, following FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles where possible. Project Tycho 2.0 includes case counts for 28 additional notifiable conditions for the US and includes data for dengue-related conditions for 99 countries between 1955 and 2010, obtained from the World Health Organization and Ministries of Health. Project Tycho 2.0 datasets are represented in a standard format and include standard SNOMED-CT codes for reported conditions, ISO 3166 codes for countries and first administrative level subdivisions, and NCBI TaxonID numbers for pathogens. Metadata for Project Tycho datasets are available on the website in human-readable format, but also in machine-interpretable DATS and DataCite metadata files.
FAIRsharing.jp89d1	Evolutionary Annotation Database	Evola	Evola contains ortholog information of all human genes among vertebrates. Orthologs are a pair of genes in different species that evolved from a common ancestral gene by speciation. In Evola, orthologs were detected by comparative genomics and amino acid sequence analysis (Computational analysis).
FAIRsharing.jprvcd	National Institutes of Health Stroke Scale Ontology	NIHSS	Domain ontology for National Institutes of Health Stroke Scale (NIHSS). Scores range from 0-42. Patients are given more points for greater deficiencies. A score of 0 indicates that the test is normal.
FAIRsharing.jptb1m	3D interacting domains	3DID	The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did exploits structural information to provide critical molecular details necessary for understanding how interactions occur.
FAIRsharing.jpxsv1	Microbial Phenotype Ontology	MPO	An ontology for describing microbial phenotypes
FAIRsharing.jq69k3	World geographical scheme for recording plant distributions	None	In setting out to establish standards for data fields in botanical databases, the International Working Group on Taxonomic Databases for Plant Sciences (TDWG) identified at an early stage of its existence a need for an agreed system of geographical units at approximately "country" level and upwards for use in recording plant distributions. This would aim to provide a standard which different organisations maintaining databases could adopt so that they could compare and exchange data with each other without loss of information due to incompatible geographical boundaries. The present publication has resulted from the deliberations over a period of three years of a committee of both taxonomic and applied botanists set up to produce such a standard. The system offered covers the whole world and identifies units at four levels, firstly continental, secondly regional (or subcontinental), thirdly at what may be called "Botanical Country" level (which may often ignore purely political considerations), and fourthly at a slightly lower level called "Basic Recording Units" where political integrity is fully recognised. In many cases, where Botanical Countries have no complicating political factors, the units at Level-3 and Level-4 are identical. Very large countries, however, have been subdivided into more conveniently sized units according to constituent states or provinces. It is a fundamental principle that units at all levels are bounded either by political boundaries which appear on modern maps or by coast lines. Modern geographical information systems have not superseded the need for such a scheme. While this standard is still in use, it is no longer actively maintained (labelled as prior on the TDWG website).
FAIRsharing.jqfgxs	Minimum Information about a Biosynthetic Gene cluster	MIBiG	A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. The Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard was created to facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters.
FAIRsharing.jr31ex	Face Of Fungi	FoF	The Face Of Fungi database allows deposition of taxonomic data, phenotypic details and other useful data. Its aim is to enhance current taxonomic understanding and ultimately enable mycologists to gain better and updated insights into the current fungal classification system. In addition, the database allows access to comprehensive metadata including descriptions of voucher and type specimens.
FAIRsharing.jr4y76	Canadensys	Canadensys	Biological collections are replete with taxonomic, geographic, temporal, numerical, and historical information. This information is crucial for understanding and properly managing biodiversity and ecosystems, but is often difficult to access. Data publication is the act of making that information available online, and is the core mission of Canadensys. Most of the datasets contain specimen data, but checklists and observation data are present as well.
FAIRsharing.jrfd8y	The Cancer Imaging Archive	TCIA	The Cancer Imaging Archive (TCIA) is a service which de-identifies and hosts medical images of cancer for public download. The data are organized as “collections”; typically patients’ imaging related by a common disease (e.g. lung cancer), image modality or type (MRI, CT, digital histopathology, etc) or research focus. DICOM is the primary file format used by TCIA for radiology imaging. Supporting data related to the images such as patient outcomes, treatment details, genomics and expert analyses are also provided when available.
FAIRsharing.jrjqc7	Buruli ulcer bacillus Database	BuruList	A database dedicated to the analysis of the genome of Mycobacterium ulcerans, the Buruli ulcer bacillus. It provides a complete dataset of DNA and protein sequences derived from the epidemic strain Agy99, linked to the relevant annotations and functional assignments.
FAIRsharing.jrxhh7	Cereal Plant Development	GRO_CPD	A structured controlled vocabulary for describing cereal plant development and growth stages. Please note that this ontology has now been superseded by the Plant Ontology.
FAIRsharing.jskz3k	Plantmetabolomics.org	Plantmetabolomics.org	Arabidopsis metabolomics database which provides researchers with resources to investigate the function of genes and metabolites.
FAIRsharing.jsxqrk	US Department of Energy Systems Biology Knowledgebase	KBase	KBase is the first large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide a knowledgebase: an integrated environment where knowledge and insights are created and multiplied.
FAIRsharing.jT49Da	Provenance Vocabulary	None	The Provenance Vocabulary provides classes and properties for describing provenance of Web data. The vocabulary focuses on two main use cases: 1.) It enables consumers of Web data to describe provenance of data retrieved from the Web and of data derived from such Web data. 2.) It enables providers of Web data to publish provenance-related metadata about their data. Notice, the vocabulary is not intended for describing provenance of other kinds of Web content. The Provenance Vocabulary is designed as a Web data specific specialization of the W3C PROV Ontology (PROV-O); classes and properties provided by the vocabulary are domain specific extensions of the more general concepts introduced in PROV-O. As a consequence, any Provenance Vocabulary based description of provenance can be easily interpreted and exchanged according to the W3C PROV family of standards. While this vocabulary is in a stable state, it is not being actively developed at this time.
FAIRsharing.jt4pzr	Sample Processing and Separation Techniques Ontology	SEP	A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative.
FAIRsharing.jtz0dv	Diabetes Mellitus Treatment Ontology	DMTO	The Diabetes Mellitus Treatment Ontology (DMTO) was created to model type 2 diabetes mellitus (T2DM) treatment. It models T2DM patients’ current conditions, previous profiles, and T2DM-related aspects, including complications, symptoms, lab tests, interactions, treatment plan (TP) frameworks, and glucose-related diseases and medications.
FAIRsharing.jvgfka	Traditional Medicine Meridian Value Sets	TM-MER	The meridian value set used in the International Classification of Traditional Medicine. The value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM). The World Health Organization, in consultation with a large group of stakeholders in the areas of Traditional Medicine or Complementary and Alternative Medicine and Health Information Systems, has developed a collaborative project plan to produce an international standard terminology and classification system for Traditional Medicine. This resource is part of an effort to produce an international standard for information on TM that is ready for electronic health records and that will serve as a standard for scientific comparability and communication.
FAIRsharing.jw50ht	Nurse triage	TRIAGE	An ontology showing the process domain of a triage nurse.
FAIRsharing.jw7rq3	Minimum Information for Reporting Next Generation Sequencing Genotyping	MIRING	MIRING defines the minimum information needed to describe genotyping results for HLA and KIR genes generated using Next Generation Sequencing (NGS) methods, allowing reinterpretation in light of continuous developments in reference sequence and genomic alignment resources for these genes.  MIRING further defines the elements of a message to be used to exchange genotyping results. Use of MIRING ensures the long-term portability and broad application of NGS genotyping data for histocompatibility, immunogenetic and immunogenomic applications.
FAIRsharing.jwhdyr	ModBase database of comparative protein structure models	ModBase	ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that relies primarily on Modeller for fold assignment, sequence-structure alignment, model building, and model assessment (http://salilab.org/modeller/). ModBase currently contains almost 30 million reliable models for domains in 4.7 million unique protein sequences. ModBase allows users to compute or update comparative models on demand, through an interface to the ModWeb modeling server (http://salilab.org/modweb). ModBase models are also available through the Protein Model Portal (http://www.proteinmodelportal.org/).
FAIRsharing.jwmjk6	Minimum Information About a Peptide Array Experiment	MIAPepAE	These are preliminary guidelines describing the Minimum Information About a Peptide-Array Experiment (MIAPepAE). Described is a checklist of data and meta-data that should accompany a peptide-array experiment. The guidelines are maintained by the research community, for the benefit of the protein/peptide-array field. MIAPepAE is intended to be a work-in-progress to be adopted for other peptide-array types, such as in situ synthesised peptide arrays. Please note: We cannot find an up-to-date website or official reporting guideline document for this resource. As such, we have marked its status as Uncertain. Please contact us if you have any information on the current status of this resource.
FAIRsharing.jx6ea0	CLUSTAL-W Alignment Format	None	CLUSTAL-W Alignment Format is a simple text-based format, often with a *.aln file extension, used for the input and output of DNA or protein sequences into the Clustal suite of multiple alignment programs.
FAIRsharing.jy3bvk	Pediatric Terminology	PedTerm	Terms associated with pediatrics, representing information related to child health and development from pre-birth through 21 years of age; contributed by the National Institute of Child Health and Human Development.
FAIRsharing.jz4ea7	Pathogen Transmission Ontology	PTRANS	This vocabulary describes a process that is the means of how a pathogen is transmitted from one host, reservoir, or source to another host. This transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.
FAIRsharing.k0kcjw	Planteome	Planteome	A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
FAIRsharing.k1p51k	CleanEx	CleanEx	CleanEx is a database which provides access to public gene expression data via unique approved gene symbols and which represents heterogeneous expression data produced by different technologies in a way that facilitates joint analysis and cross-dataset comparisons.
FAIRsharing.k297hk	Ocean Biodiversity Information System IPT	OBIS IPT	OBIS provides data hosting and helpdesk support to publishers of marine data around the globe. EurOBIS/Flanders Marine Institute (VLIZ) hosts multiple IPT installations on behalf of various OBIS Nodes. Currently, there are more than 20 OBIS Nodes around the world connecting 500 institutions from 56 countries.
FAIRsharing.k2dq5j	Asthma Ontology	AO	An ontology which describes the medical terminology for asthmatic conditions.
FAIRsharing.k337f0	DNA Data Bank of Japan	DDBJ	An annotated collection of all publicly available nucleotide and protein sequences. DDBJ collects sequence data mainly from Japanese researchers, as well as researchers in other countries. DDBJ is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.
FAIRsharing.k34tv5	National Addiction & HIV Data Archive Program	NAHDAP	NAHDAP acquires, preserves and disseminates data relevant to drug addiction and HIV research. The scope of the data housed at NAHDAP covers a wide range of legal and illicit drugs (alcohol, tobacco, marijuana, cocaine, synthetic drugs, and others) and the trajectories, patterns, and consequences of drug use as well as related predictors and outcomes.
FAIRsharing.k3fp3g	Read Clinical Terminology Version 2	Read v2	Read Codes are a coded thesaurus of clinical terms. They have been used in the NHS since 1985. There are two versions: version 2 (v2) and version 3 (CTV3 or v3). Both versions provide a standard vocabulary for clinicians to record patient findings and procedures, in health and social care IT systems across primary and secondary care. The Read Codes were developed in 1985 by Dr. James Read. The U.K. National Health Service Centre for Coding and Classification (NHS CCC) acquired and now maintains the Read Codes. Read Codes contain hundreds of thousands of terms, synonyms, and abbreviations covering all aspects of patient care including signs and symptoms, treatments and therapies, investigations, occupations, diagnoses, and drugs and appliances. Read Codes are used by healthcare professionals in computerized information systems. Read Codes are now known as Clinical Terms. PLEASE NOTE: the retirement of Read v2 and v3 (CTV3) clinical terminologies has been scheduled. The last release of Read v2 was April 2016, and as such this record has been marked with a "Deprecated" status. CTV3 is due to be retired after the April 2018 release.
FAIRsharing.k3xepk	Cell Press - Cancer Cell - Information for Authors	None	Cancer Cell is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Cancer Cell. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.k3z4q9	Common Information Model	CIM	This standard is used by the climate research community and others to describe the artefacts and processes they work with. This includes climate simulations, the specific model components used to run those simulations, the datasets generated by those components, the geographic grids upon which those components and data are mapped, the computing platforms used, and so on. A CIM document is an XML document and CIM is an evolving standard.
FAIRsharing.k4sp7m	PDB-REPRDB	PDB-REPRDB	PDB-REPRDB is a reorganized database of protein chains from PDB(Protein Data Bank), and provides 'the list of the representative protein chains' and 'the list of similar protein chain groups'.
FAIRsharing.k4yzh	BCCM/GeneCorner Plasmid Collection	BCCM/GeneCorner	The BCCM/GeneCorner Plasmid Collection warrants the long-term storage and distribution of plasmids, microbial host strains and DNA libraries of fundamental, biotechnological, educational or general scientific importance. The focus is on the collection of recombinant plasmids that can replicate in a microbial host strain. BCCM/GeneCorner also accepts natural and genetically modified animal or human cell lines, including hybridomas, as well as other genetic material, in the safe deposit and patent deposit collections.
FAIRsharing.k56rjs	Interologous Interaction Database	I2D	The I2D (Interologous Interaction Database) is a database of known and predicted mammalian and eukaryotic protein-protein interactions (PPIs). It has been built by mapping high-throughput (HTP) data between species.
FAIRsharing.k5a3yt	Big Data Nucleic Acid Simulations Database	BIGNASim	Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing.
FAIRsharing.k5ky44	TDWG Standards Documentation Specification	TDWG SDS	This document defines how TDWG standards should be presented. Each standard is a logical directory or folder containing two or more files - a cover page outlining basic meta data for the standard and one or more normative files specifying the standard itself. Rules are specified for the naming of standards and files. Human readable files should be in English, follow basic layout principles and be marked up in XHTML. The legal statements that all documents must contain are defined.
FAIRsharing.k5s8zj	Multilevel Healthcare Information Modeling	MLHIM	The Multilevel Healthcare Information Modeling (MLHIM) specifications enables the exchange of syntactically and semantically interoperable data extracts between distributed, independently developed, biomedical databases and clinical applications, promoting syntactic and semantic integration of Translational Research data. This record has been marked as having an Uncertain status as the original homepage (http://mlhim.org) and GitHub repository are no longer available. If you have any information on the current status of this format, please get in touch.
FAIRsharing.k6a8e5	Newt-omics	Newt-omics	A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences. The goal is to obtain a detailed understanding of the molecular processes underlying tissue regeneration in the newt,that may lead to the development of approaches, efficiently stimulating regenerative pathways in mammalians.
FAIRsharing.k6vsdr	Database of MHC Ligands and Peptide Motifs	SYFPEITHI	SYFPEITHI is a database comprising more than 7000 peptide sequences known to bind class I and class II MHC molecules.
FAIRsharing.k7NfCn	Wheat Trait Ontology	WTO	Wheat Trait Ontology is an ontology of wheat traits and environmental factors that affect these traits. They include resistance to disease, development, nutrition, bread quality, etc. Environmental factors include biotic and abiotic factors. An alternative title is the Wheat Phenotype Ontology.
FAIRsharing.k81521	Integrating Data for Analysis, Anonymization, and Sharing	iDASH	Integrating Data for Analysis, Anonymization and SHaring (iDASH) is one of the National Centers for Biomedical Computing (NCBC) under the NIH Roadmap for Bioinformatics and Computational Biology. Founded in 2010, the iDASH center is hosted on the campus of the University of California, San Diego and addresses fundamental challenges to research progress and enables global collaborations anywhere and anytime. Driving biological projects motivate, inform, and support tool development in iDASH. iDASH collaborates with other NCBCs and disseminates tools via annual workshops, presentations at major conferences, and scientific publications. iDASH offers a secure cyberinfrastructure and tools to support a privacy-preserving data repository and open source software. iDASH also is active in research and training in its mission area.
FAIRsharing.k97xzh	Sequence Alignment Map	SAM	The Sequence Alignment/Map (SAM) format is a TAB-delimited text format consisting of a header section, which is optional, and an alignment section.
FAIRsharing.k9ptv7	PlasmID	PlasmID	The PlasmID Repository provides researchers with inexpensive sequencing and plasmid services, holding ~350,000 plasmids, including most human cDNAs as well as shRNA libraries. PlasmID was added to the DNA Resource Core in the spring of 2004 to reduce the burden on individual labs to store, maintain and distribute plasmid clones and supporting information.
FAIRsharing.k9vqye	National Snow and Ice Data Center Data Portal	NSIDC	The National Snow and Ice Data Center (NSIDC) contains data on the cryosphere, which includes snow, ice, glaciers, frozen ground, and climate interactions. NSIDC manages and distributes scientific data, creates tools for data access, supports data users, performs scientific research, and educates the public about the cryosphere. Data are from satellites and field observations, and are from NASA, NSF, NOAA, and other programs. All data are available free of charge.
FAIRsharing.ka5tfc	Health Level Seven Reference Implementation Model	HL7	The Health Level Seven Version 3 (V3) Normative Edition—a suite of specifications based on HL7’s Reference Information Model (RIM)—provides a single source that allows implementers of V3 specifications to work with the full set of messages, data types, and terminologies needed to build a complete implementation.
FAIRsharing.kap6gp	Berkeley Drosophila Genome Project EST database	BDGP	The goals of the Drosophila Genome Center are to finish the sequence of the euchromatic genome of Drosophila melanogaster to high quality and to generate and maintain biological annotations of this sequence.
FAIRsharing.kcnjj2	Minimum Information about Flow Cytometry	MIFlowCyt	The Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) establishes criteria for recording and reporting information about the flow cytometry experiment overview, samples, instrumentation and data analysis. It promotes consistent annotation of clinical, biological and technical issues surrounding a flow cytometry experiment by specifying the requirements for data content and by providing a structured framework for capturing information.
FAIRsharing.kcpnmb	HealthData.gov	HealthData.gov	HealthData.gov makes high value health data more accessible to entrepreneurs, researchers, and policy makers in the hopes of better health outcomes for all. Data is drawn from CMS, CDC, FDA and NIH, among others that are easily available and accessible to the public and to innovators across the country. This information includes clinical care provider quality information, nationwide health service provider directories, databases of the latest medical and scientific knowledge, consumer product data, community health performance information, government spending data and much more.
FAIRsharing.kd39j4	IRESite	IRESite	The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract the eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure.
FAIRsharing.kd6sg8	RegenBase ontology	RB	The RegenBase ontology describes biological entities and processes studied in spinal cord injury (SCI) research.
FAIRsharing.kexkq9	CarpeDB	CarpeDB	CarpeDB serves as a novel source for epilepsy researchers by featuring scores of "epilepsy genes" and associated publications in one locus. Furthermore, multiple genes implicated in epilepsy are also implicated in other human disorders.
FAIRsharing.KfGESz	Guideline for Minimum Information Stroke Research and Clinical Data Reporting	GMISR	The Guideline for Minimum Information Stroke Research and Clinical Data Reporting (GMISR) is a standardised reporting guideline for stroke research and clinical data reporting.
FAIRsharing.kfqVQ7	BcForms Grammar	BcForms Grammar	The BcForms represents complexes as a sets of subunits, including their stoichiometries, and a set of interchain/intersubunit crosslinks. Furthermore, BcForms can be combined with BpForms and SMILES descriptions of subunits to calculate properties of complexes. BcForms descriptions of complexes consist of two parts: subunit composition of the complex, and interchain crosslinks. The BcForms grammar is defined in Lark syntax, which is based on EBNF syntax.
FAIRsharing.kfs4pj	Pseudogene	Pseudo	This ontology is about human pseudogenes, extending the existing SO framework to incorporate additional attributes. Relationships between pseudogenes and segmental duplications are defined in this standard. To answer research questions and to annotate pseudogenes appropriately, a series of logical rules using SWRL was created.
FAIRsharing.khqejc	ThermoML Archive	ThermoML Archive	The ThermoML Archive is a storage facility of experimental thermophysical and thermochemical property data. The repository was created through the cooperation between the Thermodynamics Research Center (TRC), NIST and: Journal of Chemical and Engineering Data (JCED), Journal of Chemical Thermodynamics, Fluid Phase Equilibria, Thermochimica Acta, and the International Journal of Thermophysics. The ThermoML files corresponding to articles in the journals are available with permission of the journal publishers.
FAIRsharing.KhTFtY	YeastMine	YeastMine	Search and retrieve S. cerevisiae data with YeastMine, populated by SGD and powered by InterMine.
FAIRsharing.kj336a	Microbial Culture Collection Vocabulary	MCCV	Structured controlled vocabulary for describing meta information of microbial calture collection maintained in biological research centers
FAIRsharing.kj4pvk	SciCrunch	SciCrunch	SciCrunch resource registry is the new name of the NIF registry. SciCrunch is a data sharing and display platform. Anyone can create a custom portal where they can select searchable subsets of hundreds of data sources, brand their web pages and create their community. SciCrunch will push data updates automatically to all portals on a weekly basis.
FAIRsharing.kjncvg	NOAA National Centers for Environmental Information Data Access Portal	NOAA NCEI Data Access	The National Oceanic and Atmospheric Administration National Centers for Environmental Information (NOAA NCEI) Data Access Portal offers download and subsetting options for a growing collection of environmental data. While current offerings are primarily limited to weather and climate information, the application has a data-agnostic infrastructure designed to accommodate a broad spectrum of observation formats from across science disciplines.
FAIRsharing.kK7dbW	Neuroscience Information Exchange Format	NIX	NIX defines a data model for annotated scientific datasets, i.e. data together with metadata, and a corresponding file format based on HDF5 for storing and sharing such datasets. In particular, this format was developed for storing electrophysiology and other neuroscience data together with their metadata. However, the data model is also able to represent other kinds of data used in the field e.g. image data or image stacks.
FAIRsharing.kkdpxe	MetaboLights	MTBLS	MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information.
FAIRsharing.kkftrs	Conditions of use of 1958BC data including policy on incidental findings (National Child Development Study)	None	The National Child Development Study (NCDS) is a continuing longitudinal study that seeks to follow the lives of all those living in Great Britain who were born in one particular week in 1958. Conducted by the Centre for Longitudinal Studies (CLS), the aim of the study is to improve understanding of the factors affecting human development over the whole lifespan. It collects information on physical and educational development, economic circumstances, employment, family life, health behaviour, wellbeing, social participation and attitudes. This policy relates to the conditions of use of 1958BC data and is sent to successful applicants for (linked) data. It is equitable that applicants should know what these conditions are before completing the application process.
FAIRsharing.kn0d5v	Dendritic cell	DC_CL	"Dendritic cell" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/DC_CL. This text was generated automatically. If you work on the project responsible for "Dendritic cell" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.kn4ycg	AgBase	AgBase	AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.
FAIRsharing.knrb06	Nexus XML	NeXML	To facilitate interoperability in evolutionary comparative analysis, we present NeXML, an XML standard (inspired by the current standard, NEXUS) that supports exchange of richly annotated comparative data. NeXML defines syntax for operational taxonomic units, character-state matrices, and phylogenetic trees and networks. Documents can be validated unambiguously. Importantly, any data element can be annotated, to an arbitrary degree of richness, using a system that is both flexible and rigorous. We describe how the use of NeXML by the TreeBASE and Phenoscape projects satisfies user needs that cannot be satisfied with other available file formats
FAIRsharing.Knuna7	Policy for Communication of IDG Resources	None	This policy covers the rules and regulations surrounding the communication of results from projects with NIH IDG funding. Communication of results stemming from work performed by members of the Consortium with NIH IDG funding can be made by individual IDG members and their institutions. For outreach purposes, information associated with IDG work performed by the members of the Consortium will be made available to the Resource Dissemination and Outreach Center.
FAIRsharing.KOiDmy	EMODnet Chemistry	EMODnet Chemistry	The EMODnet Chemistry portal provides easy access to marine chemical data, standardised harmonized validated data collections and reliable data products, highly relevant to assess ecosystem status according to the Marine Strategy Framework Directive. Data on temporal and spatial distribution of marine litter, of the concentration of nutrients, organic matter, pesticides, heavy metals, radionuclides and antifoulants in the water column, in the sediment and in biota.
FAIRsharing.KoKgH7	SoyMine	SoyMine	This mine integrates many types of data for soybean. It is currently under development by LIS, built from the LIS chado database (genomic data) and the SoyBase database (genetic data) as well as other resources
FAIRsharing.KoQXUl	YamBase	YamBase	YamBase is a database containing breeding data for Yam (genus Dioscorea). Yam species that are being used for breeding include Dioscorea rotundata, Dioscorea cayenensis (both are native to Africa and the major cultivated species), Dioscorea aleata (native to Southeast Asia), and Dioscorea praehensilis, as well as several other species. YamBase contains phenotypic and genotypic data, as well as trial metadata from breeding programs in Africa.
FAIRsharing.kq47fy	SpliceDisease	SpliceDisease	The SpliceDisease database provides information linking RNA splicing to human disease, including the change of the nucleotide in the sequence, the location of the mutation on the gene, the reference Pubmed ID and detailed description for the relationship among gene mutations, splicing defects and diseases.
FAIRsharing.kqbg3s	Integrated Resource for Reproducibility in Macromolecular Crystallography	IRRMC	The Integrated Resource for Reproducibility in Macromolecular Crystallography (IRRMC) was created to make the raw data of protein crystallography more widely available. The IRRMC identifies, catalogs and provides metadata related to datasets that could be used to reprocess the original diffraction data. The intent of this project is to make the resulting three-dimensional structures more reproducible and easier to modify and improve as processing methods advance.
FAIRsharing.kr3215	Access to Biological Collection Data	ABCD	The Access to Biological Collections Data (ABCD) Schema is a standard for the access to and exchange of data about primary biodiversity data. It is compatible with several existing data standards and supports several datasets.
FAIRsharing.krvr4	Erythropoiesis Database	EpoDB	EpoDB (Erythropoiesis database) is a database of genes that relate to vertebrate red blood cells. It includes DNA sequence, structural features, protein information, gene expression information and transcription factor binding sites.
FAIRsharing.ktafj3	Database of genomic structural VARiation	dbVar	dbVar is a database of human genomic structural variation where users can search, view, and download data from submitted studies. dbVar stopped supporting data from non-human organisms in 2017, however existing non-human data remains available. In keeping with the common definition of structural variation, most variants are larger than 50 basepairs in length - however a handful of smaller variants may also be found. dbVar provides access to the raw data whenever available, as well as links to additional resources, from both NCBI and elsewhere. It can accept diverse types of events, including inversions, insertions and translocations. Additionally, both germline and somatic variants are accepted.
FAIRsharing.kthr0s	Musa Germplasm Information System	MGIS	The Musa Germplasm Information System (MGIS) contains key information on Musa germplasm diversity, including passport data, botanical classification, morpho-taxonomic descriptors, molecular studies, plant photographs and GIS information on 4771 accessions managed in 24 collections around the world, making it the most extensive source of information on banana genetic resources.
FAIRsharing.ktk1sg	Mental State Assessment	ONL-MSA	This ontology is a module of the OntoNeuroLOG ontology, developed in the context of the NeuroLOG project, a french project supported by ANR (ANR-06-TLOG-024 grant) aiming at integrating distributed heterogeous resources in neuroimaging. This MSA ontology module covers the field of mental state assessments, i.e. instruments, instrument variables, assessments, and resulting scores. It includes a generic domain core ontology, that provides a general model of such entities and a general taxonomy of behavioural, neurosychological and neuroclinical instruments, that can be easily extended to model any particular kind of instrument. It also includes such extensions for 8 relatively standard instruments, namely: (1) the Beck-depression-inventory-(BDI-II), (2) the Expanded-Disability-Status-Scale, (3) the Controlled-oral-word-association-test, (4) the Free-and-Cued-Selective-Reminding-Test-with-Immediate-Recall-16-item-version-(The-Gröber-and-Buschke-test), (5) the Mini-Mental-State, (6) the Stroop-color-and-word-test, (7) the Trail-making-test-(TMT), (8) the Wechsler-Adult-Intelligence-Scale-third-edition, (9) the Clinical-Dementia-Rating-scale, (10) the Category-verbal-fluency, (11) the Rey-Osterrieth-Complex-Figure-Test-(CFT).
FAIRsharing.KTpITA	Simple Cone Search	None	The Simple Cone Search specification defines a simple query protocol for retrieving records from a catalog of astronomical sources. The query describes sky position and an angular distance, defining a cone on the sky. The response returns a list of astronomical sources from the catalog whose positions lie within the cone, formatted as a VOTable. This version of the specification is essentially a transcription of the original Cone Search specification in order to move it into the IVOA standardization process.
FAIRsharing.kvee9e	Chickpea Portal	Chickpea Portal	This resource contains genome and gene sequences, features and isolationed chromosome alignments, while functional annotation can be searched in GBrowse. Chickpea forms a critical component of the Australian and Indian farming system, offering offer a high value alternative to cereals, an important disease break, opportunities for grass weed control and respite from high nitrogen application.
FAIRsharing.kw3mn5	Image and Data Quality Assessment Ontology	IDQA	Image and Data Quality Assessment for scientific data management
FAIRsharing.kwsfg2	BACPAC Minimum Dataset: Required Baseline Demographic and Outcomes Measures	None	This document contains domains and instruments for the longitudinal assessments in the BACPAC Minimum Dataset. Where applicable, core data elements of the BACPAC Minimum Dataset are taken from previously validated instruments (e.g., PROMIS measures). The BACPAC Minimum Dataset is an expanded version of the HEAL Initiative Core Data Elements. In addition to the longitudinal assessments, the BACPAC Minimum Dataset includes a collection of demographic and baseline characteristic core data elements, which are administered to study participants at baseline only.
FAIRsharing.kwwh11	FDA Medical Devices	FDA-MedDevice	The FDA Medical Devices ontology categorises FDA-approved medical devices. If you work on the project responsible for "FDA Medical Devices" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.kwzydf	Scholars Portal Dataverse	None	Scholars Portal Dataverse is a repository of research data in all fields of research. Researchers can share, publish, archive, find and cite data across all research fields. Researchers from subscribing institutions can use Dataverse to directly deposit data, create metadata, release and share data openly or privately, visualize and explore data, and search for data.
FAIRsharing.kx2md1	Ontology of Immune Epitopes	ONTIE	The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes. ONTIE has been developed as a subset of OBI (Ontology of Biomedical Investigations) and includes terms relating to experiments involving immune epitopes. This file contains the minimal amount of upper ontology terms and axioms from BFO (Basic Formal Ontology), IAO (Information Artifact Ontology) and OBI, in order to view and reason upon ONTIE. It is currently at version 0.1 beta. ONTIE covers terms regarding immune responses, adaptive immune receptors, immune epitope assays, MHC molecules, and infectious diseases. ONTIE is (at this development stage) a virtual ontology, drawing together terms from multiple reference ontologies. We are actively working on adding more terms to ONTIE either through term requests or through active contribution to external ontologies.
FAIRsharing.kx4bgf	NGS ontology	NGSONTO	The NGSOnto ontology aims at capturing the workflow of all the processes involved in a Next Generation Sequencing, in order to ensure the reproducibility of the entire process, through the use of a controled and specific vocabulary.
FAIRsharing.kXzfjt	National Cancer Institute’s Proteomic Data Commons	NCI PDC	The NCI's Proteomic Data Commons has been created to make cancer-related proteomic datasets easily accessible to the public, and to facilitate multi-omic integration in support of precision medicine through interoperability with other resources. The PDC is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a secure cloud-based infrastructure featuring diverse data sets and innovative analytic tools – all designed to advance data-driven scientific discovery. The CRDC enables researchers to link proteomic data with other data sets (e.g., genomic and imaging data) and to submit, collect, analyze, store, and share data throughout the cancer data ecosystem.
FAIRsharing.kz1ygb	PKO_Re	PKO	PKO_Re is inactive as no information can be found at present. The associated bio portal link no longer works.
FAIRsharing.kz6vpp	Domain mapping of disease mutations	DMDM	Domain mapping of disease mutations (DMDM) is a database in which each disease mutation can be displayed by its gene, protein or domain location.
FAIRsharing.l0p1Oi	Beilstein Archives	None	This repository is currently limited to preprints related to the Beilstein Journal of Nanotechnology and the Beilstein Journal of Organic Chemistry. All preprints are posted with a CC-BY 4.0 license.
FAIRsharing.L13TT5	National Institute of Mental Health Data Archive	NDA	The National Institute of Mental Health Data Archive (NDA), originally established to support autism research, is an informatics platform and data repository that facilitates data sharing across all of mental health and other research communities, combining data from each of these repositories into a single resource with a single process for gaining access to all shared data. While querying and browsing data is publicly available, all subject-level data is available behind a login.
FAIRsharing.l3u60T	University of Tasmania Research Data Portal	UTAS RDP	The University of Tasmania Research Data Portal (RDP) enables UTAS researchers to securely store and publish their datasets. Datasets published in RDP are publicly available through the Research Data Australia Search Portal (https://researchdata.edu.au/).
FAIRsharing.L4Q3H9	IVOA Identifier	IVOA Identifier	An IVOA Identifier is a globally unique name for a resource within the Virtual Observatory. This name can be used to retrieve a unique description of the resource from an IVOA-compliant registry or to identify an entity like a dataset or a protocol without dereferencing the identifier. This document describes the syntax for IVOA Identifiers as well as how they are created. The syntax has been defined to encourage global-uniqueness naturally and to maximize the freedom of resource providers to control the character content of an identifier.
FAIRsharing.L8BvH0	Policy for Metadata Requirements for IDG Members	None	IDG Consortium members are required to make available metadata that describes generated datasets, “wet” (material) resources, such as reagents, and digital resources developed as part of the IDG project. Metadata should conform to the metadata standards developed and approved by the IDG Consortium and any metadata repository or distributor requirements for datasets, material resources or digital resources that will be made publicly available .
FAIRsharing.l8fVBn	FAIR Maturity Indicator Gen2-MI-I1B	None	The FAIR Maturity Indicator Gen2-MI-I1B measures the use of a formal, accessible, shared, and broadly applicable language for knowledge representation. The unambiguous communication of knowledge and meaning (what symbols are, and how they relate to one another) necessitates the use of languages that are capable of representing these concepts in a machine-readable manner. There is debate in the community about what languages would be considered "knowledge representation languages", as such this Maturity Indicator is broken into two sub-MIs (Gen2-FM-I1A and Gen2-FM-I1B). This MI takes a strict interpretation, accepting only formats that are ontologically-grounded and machine-resolvable.
FAIRsharing.l8Sf5x	DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources	DECIPHER	DECIPHER (Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources) is an interactive web-based resource that incorporates a suite of tools designed to aid the interpretation of submicroscopic chromosomal imbalance, inversions, and translocations.
FAIRsharing.l9GDBz	AD Knowledge Portal	None	The AD Knowledge Portal is a platform for accessing data, analyses, and tools that the National Institute on Aging’s (NIA) Alzheimer's Disease Translational Research Program generates through several initiatives. The program encourages open-science collaborations that share resources early in the research life cycle. The AD Knowledge Portal initially hosted data from the Accelerating Medicines Partnership in Alzheimer’s Disease (AMP-AD) Target Discovery and Preclinical Validation Project. The AD Knowledge Portal now includes “omics” data from human samples and experimental model systems, as well as bioinformatic analyses from research teams and cross-consortium working groups. Please note that, while the data are publicly searchable, a login is required to download data sets.
FAIRsharing.L9UwAM	CLOSER Discovery	CLOSER Discovery	CLOSER Discovery enables researchers to search and browse questionnaires and data from eight leading UK longitudinal studies. Relevant survey questions and variables, which can be filtered by study, topic and life stage, are available. Accessing data from each study varies according to the source and data type.
FAIRsharing.LaaxUg	IDG Small Molecule Resource Reporting Standards	None	Small molecule perturbagen reporting standards for the Illuminating the Druggable Genome (IDG) consortium.
FAIRsharing.lCVfCv	TreeGenes	TreeGenes	TreeGenes is focused on connecting genomic, phenotypic, and environmental data for forest tree populations across the world. The database provides a custom informatics tools to manage the flood of information resulting from high-throughput genomics projects in forest trees from sample collection to downstream analysis. This resource is enhanced with systems that are well connected with federated databases, automated data flows, machine learning analysis, standardized annotations and quality control processes. The TreeGenes database contains several curated modules that support the storage of data and provide the foundation for web-based searches and visualization tools.
FAIRsharing.Lcws1N	FAIR Metrics - Indexed in a searchable resource	FM-F4	FM-F4 provides a measurement of the degree to which the digital resource can be found using web-based search engines. Most people use a search engine to initiate a search for a particular digital resource of interest. If the resource or its metadata are not indexed by web search engines, then this would substantially diminish an individual’s ability to find and reuse it. Thus, the ability to discover the resource should be tested using i) its identifier, ii) other text-based metadata. The persistent identifier of the resource and one or more URLs that give search results of different search engines must be provided. This metric applies to part F4 of the FAIR Principles.
FAIRsharing.LcyXdU	Thesaurus Cognitive psychology of human memory	None	This bilingual thesaurus (French-English), developed at Inist-CNRS, covers the concepts from the cognitive psychology of human memory (memory systems and processes, empirical effects, memory disorders, study methods, theories and models), organized in the form of hierarchical (generic and specific terms), equivalence (synonyms) and association relationships. Most of the concepts are presented with a definition and a bibliography. Notes have been added to some of them (only in French for the moment). The resource is mapped to the Cognitive Atlas, Wikipedia, wikidata and the Santé Psy thesaurus. This resource consists of 870 terminological entries grouped into 18 collections.
FAIRsharing.ld9wne	Open Data for Access and Mining Structural Metadata	ODAM Structural Metadata	Open Data for Access and Mining (ODAM) Structural Metadata is a format describing how the metadata should be formatted and what should be included to ensure ODAM compliance for a data set. To comply with this format, two metadata files in TSV format are required in addition to the data file(s). These two files describe the metadata of the dataset, which includes descriptions of measures and structural metadata like references between tables. It is this latter format that is described in this record. The metadata lets non-expert users explore and visualize your data. By making data interoperable and reusable by both humans and machines, it also encourages data dissemination according to FAIR principles. The structural metadata is specified in section three of the listed homepage.
FAIRsharing.LdoU1I	International Mouse Phenotyping Consortium	IMPC	The International Mouse Phenotyping Consortium (IMPC) produces a publicly-available repository that stores information on IMPC processes, data and annotations. The IMPC is an international effort by 19 research institutions to identify the function of every protein-coding gene in the mouse genome by switching off or ‘knocking out’ each of the roughly 20,000 genes that make up the mouse genome.
FAIRsharing.ldTee3	IDG Tissue Resource Reporting Standards	None	Tissue sample model system reporting standards for the Illuminating the Druggable Genome (IDG) consortium.
FAIRsharing.LEtKjT	Imperial College Research Computing Service Data Repository	None	A lightweight digital repository for data based on the concepts of collections of filesets. Both the collection and the fileset are assigned a DOI by the DataCite organisation which can be quoted in articles. Browsing and data deposition are available only when logged in. 
FAIRsharing.lEZbPK	FAIR Maturity Indicator Gen2-MI-A2	None	The FAIR Maturity Indicator Gen2-MI-A2 measures if there is a policy for metadata persistence. Cross-references to data from third-party’s FAIR data and metadata will naturally degrade over time, and become “stale links”. In such cases, it is important for FAIR providers to continue to provide descriptors of what the data was to assist in the continued interpretation of those third-party data. As per FAIR Principle F3, this metadata remains discoverable, even in the absence of the data, because it contains an explicit reference to the IRI of the data.
FAIRsharing.lFdTxB	Disbiome	Disbiome	Disbiome is a database covering microbial composition changes in different kinds of diseases. Disease names, detection methods or organism names can be used as search queries giving that return information related to the experiment (related disease/bacteria, abundancy subject/control, control type, detection method and related literature).
FAIRsharing.lKaOme	BioGRID Open Repository of CRISPR Screens	ORCS	BioGRID ORCS is an open repository of CRISPR screens compiled through comprehensive curation efforts. Our current index is version 1.0.3 and searches more than 49 publications and 58,161 genes to return more than 895 CRISPR screens from 3 major model organism species and 629 cell lines. All screen data are freely provided through our search index and available via download in a wide variety of standardized formats.
FAIRsharing.LKgRmR	Genomedata	Genomedata	Genomedata is a format for efficient storage of multiple tracks of numeric data anchored to a genome. The format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint. We have also developed utilities to load data into this format. A reference implementation in Python and C components is available here under the GNU General Public License.
FAIRsharing.LLXjWx	FAIR Maturity Indicator Gen2-MI-I3	None	The FAIR Maturity Indicator Gen2-MI-I3 measures whether the linked data metadata contain links that are not from the same source (domain/host). Data silos thwart interoperability. Thus, we should reasonably expect that some of the references/relations point outwards to other resources, owned by third-parties; this is one of the requirements for 5 star linked data.
FAIRsharing.lone3g	e-cienciaDatos	e-cienciaDatos	e-cienciaDatos is a multidisciplinary data repository that houses the scientific datasets of researchers from the public universities of the Community of Madrid and the UNED, members of the Consorcio Madroño, in order to give visibility to these data. The purpose of this repository is to ensure data preservation and to facilitate data access and reuse. e-cienciaDatos collects datasets from of each of the member universities. e-cienciaDatos offers the deposit and publication of datasets, assigning a digital object identifier DOI to each of them. The association of a dataset with a DOI will facilitate data verification, dissemination, reuse, impact and long-term access. In addition, the repository provides a standardized citation for each dataset, which contains sufficient information so that it can be identified and located, including the DOI.
FAIRsharing.LQfdaV	Art & Architecture Thesaurus	AAT	The Getty Art & Architecture Thesaurus (AAT) is a thesaurus containing generic terms, dates, relationships, sources, and notes for work types, roles, materials, styles, cultures, techniques, and other concepts related to art, architecture, and other cultural heritage. The AAT is one of 5 Getty Vocabularies intended to provide terminology and other information about the objects, artists, concepts, and places important to various disciplines that specialize in art, architecture, and other material culture. The AAT contains generic terms; it contains no iconographic subjects and no proper names. That is, each concept is a case of many (a generic thing), not a case of one (a specific thing).
FAIRsharing.lSuKtr	IVOA Server-side Operations for Data Access	SODA	This document describes the Server-side Operations for Data Access (SODA) web service capability. SODA is a low-level data access capability or server side data processing that can act upon the data files, performing various kinds of operations: filtering/subsection, transformations, pixel operations, and applying functions to the data.
FAIRsharing.LSUZRp	New Zealand National Vegetation Survey Databank	NVS	The New Zealand National Vegetation Survey Databank (NVS) is a physical archive and electronic databank containing records of >100,000 vegetation survey plots. Data are available for search and download. NVS contains data spanning more than 70 years of indigenous and exotic plants in New Zealand's terrestrial ecosystems. A broad range of habitats are covered, with special emphasis on indigenous forests and grasslands.
FAIRsharing.ltyo8e	Visual Media Service	VisMS	The aim of the Visual Media Service is to provide CH researchers with an automatic system to publish on the web, search, visualize and analyze images and 3D models in a common workspace, enabling sharing, interoperability and reuse of visual data. Visual Media Service enables the easy publication and visualization on the web of high-resolution 2D images, RTI (Reflection Transformation Images) and 3D models.
FAIRsharing.ltYWUS	Energy Data eXchange	EDX	EDX is the Department of Energy (DOE)/Fossil Energy's (FE) virtual library and data laboratory built to find, connect, curate, use and re-use data to advance fossil energy and environmental R&D. EDX provides (1) long-term curation of both historic and current data and information from a wide variety of sources, (2) access to research across multiple NETL projects and programs and energy science needs, (3) discovery of data and information, including technical products from NETL-affiliated research, and (4) support for collaboration and coordination between various agencies, organizations, and institutions through EDX’s Collaborative Workspaces. EDX has both public and private aspects to facilitate external and internal access to research. The public side of EDX supports discovery and access to publicly available data from NETL as well as open-access data from authoritative, external sources. The private side of EDX supports research collaboration and coordination using role-based security privileges and access rights.
FAIRsharing.lU7PSC	COVID-19 Pandemic (AUSSDA - The Austrian Social Science Data Archive)	COVID Data Hub by AUSSDA	Social Science Data on Coronavirus Disease: Your information hub for SARS-CoV-2 / COVID-19 pandemic related studies in Austria in the social sciences. Studies will be made available as fast as possible. Thus, not all information is available in English. Some studies will be published as pre-releases meaning that these are not the final datasets. Researchers therefore are obliged to check the most recent version before publishing and must add a disclaimer that they have been publishing with a pre-release version. Pre-release datasets are likely to be updated and substantial changes can happen as part of the continuing quality checks (e.g., weighting variables might change).
FAIRsharing.LwAk3f	Thesaurus of Blood Transfusion	None	The thesaurus of Blood Transfusion consists of 2032 entries, in English and French.
FAIRsharing.lWbenx	Reference list of Metabolite names	RefMet	RefMet provides a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. This is an essential prerequisite for the ability to compare and contrast metabolite data across different experiments and studies. Over 200,000 names from a set of over 1,100 MS and NMR studies on the Metabolomics Workbench has been used to generate a highly curated analytical chemistry-centric list of common names for metabolite structures and isobaric species. Additionally, the vast majority of these names have been linked to a metabolite classification system using a combination of LIPID MAPS and ClassyFire classification methods. A name-conversion user interface is provided where users can submit a list of metabolite names and map them to the corresponding RefMet names. New metabolites are constantly being added to RefMet, however very new metabolite names generated by metabolomics experiments may not currently map to RefMet identifiers. Nevertheless, RefMet has the ability to greatly increase the data-sharing potential of metabolomics experiments and facilitate "meta-analysis" and systems biology objectives for the majority of commonly encountered metabolite species.
FAIRsharing.lwW6a1	ioChem-BD	ioChem-BD	ioChem-BD is a digital repository of Computational Chemistry and Materials results. A set of modules and tools aimed to manage large volumes of quantum chemistry results from a wide variety of broadly used simulation packages.
FAIRsharing.lXAOu2	FAIR Maturity Indicator Gen2-MI-F2B	None	The FAIR Maturity Indicator Gen2-MI-F2B measures whether the metadata of the record contains "structured" elements that are "grounded" in shared vocabularies. For example, in one of the various forms of linked data (JSON-LD, RDFa, Turtle, etc.)
FAIRsharing.m03n8s	Reflora Virtual Herbarium	REFLORA	The mission of this project was to built a virtual herbarium to display the images of Brazilian plants that are housed in foreign herbaria and was presented by the Brazilian Research Council (CNPq) to the Rio de Janeiro Botanical Garden (JBRJ) in December 2010. The objective was to provide capacity to store and display high quality data regarding Brazil’s Flora within a public institution. The Reflora Virtual Herbarium is designed to allow taxonomists to perform similar procedures to the ones they are used to do within physical collections. In this site they will access, rather than physical specimens, high quality images that can be consulted, re-determined and typified, amongst other functionalities. In due course, the curators of partner institutes will receive periodic and on-demand system reports and will be able to update data in their own collections.  There are currently (2016-10-30) 1922914 images of specimens available in the Reflora Virtual Herbarium. Amongst them, 116925 are nomenclatural types and 525348 are georeferenced records. If you are a trained taxonomist and would like to collaborate in the Reflora Virtual Herbarium, contact us by e-mail at reflora@jbrj.gov.br.
FAIRsharing.m0e1s0	SoyOntology	SOY	This is a community-curated controlled vocabulary for soybean field growth stages (Soybean Whole Plant Growth Ontology), plant structure names (Soybean Structure Ontology), development (Soybean Development Ontology) and plant traits (Soybean Trait Ontology). Where applicable, soybean specific terms have been associated with their Plant Ontology (PO) and Gramene Plant Trait Ontology (TO) synonyms to facilitate cross species comparisons.  Currently, there are 4 divisions to SOY terms, soybean structural terms (Soybean Structure Ontology), developmental stages (Soybean Developmental Ontology), whole plant development terms (Soybean Whole Plant Growth Stages) and trait terms (Soybean Trait Ontology). For the trait, structure and development terms the old SoyTO and SoyGRO accessions have been added to their records as synonyms for continuity.
FAIRsharing.m0pprb	Randomized Controlled Trials Ontology	RCTONT	An ontology specifically for Randomized Controlled Trials in order to facilitate the production of systematic reviews and metaanalysis.
FAIRsharing.m21pn	STrengthening the REporting of Genetic Association Studies	STREGA	The STrengthening the REporting of Genetic Association studies (STREGA) initiative builds on the Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) Statement and provides additions to 12 of the 22 items on the STROBE checklist. The additions concern population stratification, genotyping errors, modelling haplotype variation, Hardy-Weinberg equilibrium, replication, selection of participants, rationale for choice of genes and variants, treatment effects in studying quantitative traits, statistical methods, relatedness, reporting of descriptive and outcome data, and the volume of data issues that are important to consider in genetic association studies.
FAIRsharing.m283c	Uniprot Core Ontology	core	The UniProt core is an OWL ontology that describes the predicates, classes and concepts used to model the UniProt data in RDF.
FAIRsharing.m2NU20	Citation File Format	CFF	The Citation File Format (CFF) is a human-centric, machine-readable format for software citation metadata. It is developed to provide an easy way for RSEs, and other developers of software in academia, to ensure that they can receive credit for their work; likewise, it provides researchers with access to the necessary metadata for references to the software they use in their research. The Citation File Format follows the Software Citation Principles, and is compatible with the CodeMeta JSON-LD exchange format for software metadata.
FAIRsharing.M2wo0O	OpenAltimetry	OpenAltimetry	OpenAltimetry is a cyberinfrastructure platform for discovery, access, and visualization of data from NASA’s ICESat and ICESat-2 missions. These laser profiling altimeters are being used to measure changes in the topography of Earth’s ice sheets, vegetation canopy structure, and clouds and aerosols. A new paradigm for data access was required to serve the needs of a diverse scientific community seeking to take advantage of these unique observations. OpenAltimetry, which is the product of a collaboration between UNAVCO, the National Snow and Ice Data Center (NSIDC), the Scripps Institution of Oceanography and San Diego Supercomputer Center at UC San Diego, was custom-built to meet these needs.
FAIRsharing.m3316t	VirHostNet 2.0	VirHostNet	VirHostNet 2.0 integrates an extensive and original literature-curated dataset of virus/virus and virus/host protein-protein interactions complemented with publicly available data.
FAIRsharing.m3g9n9	Standard Protocol Items: Recommendations for Interventional Trials	SPIRIT	The protocol of a clinical trial is essential for study conduct, review, reporting, and interpretation. SPIRIT (Standard Protocol Items: Recommendations for Interventional Trials) is an international initiative that aims to improve the quality of clinical trial protocols by defining an evidence-based set of items to address in a protocol.
FAIRsharing.m3wzgs	Fly taxonomy	FBsp	"Fly taxonomy" provides taxonomic information about the Fruit fly family (Drosophilidae). This information is a combination of NCBI TAXON data and from the following paper: Grimaldi, D.A."A phylogenetic, revised classification of Genera in the Drosophilidae (Diptera)" Bulletin of the American Museum of Natural History. New York: New York . American Museum of Natural History, 1990.
FAIRsharing.m4a6d3	HotRegion	HotRegion	Database of interaction Hotspots across the proteome. Hot spots are energetically important residues at protein interfaces and they are not randomly distributed across the interface but rather clustered. These clustered hot spots form hot regions. HotRegion, provides information of these interfaces by using predicted hot spot residues, and structural properties of these interface residues such as pair potentials of interface residues, accessible surface area (ASA) and relative ASA values of interface residues of both monomer and complex forms of proteins. Also, the 3D visualization of the interface and interactions among hot spot residues are provided.
FAIRsharing.m58329	Database Of Local Biomolecular Conformers	Dolbico	Dolbico, the Database Of Local Biomolecular Conformers, stores DNA structural data including the information about DNA local spatial arrangement. The main aim of Dolbico is the exploration of DNA structure at a local level. The analysis of local DNA structure is based on a classification system that uses 9 torsional angles (7 backbone angles and two glycosidic torsions) to categorize dinucleotides into several distinct conformational families. The implemented classification workflow is able not only to classify dinucleotides into already existing classes, but is also able to discover new classes in new solved DNA structures.
FAIRsharing.m5gatp	Ontology of Nuclear Toxicity	ONTOTOXNUC	Ontology of nuclear toxicity developed during ToxNuc project <>.
FAIRsharing.m5swgj	Protein InFormation Resource Format	PIFRF	This PIR Database File Structure and Format Specification describes the files comprising the PIR-International Protein Sequence Database and the format of each. The format has been enhanced significantly for Release 39.00 to what is referred to as "enhanced NBRF" format.
FAIRsharing.m867wn	ADHDgene	ADHDgene	A genetic database for attention deficit hyperactivity disorder. ADHDgene aims to provide research community with a central genetic resource and analysis platform for ADHD, to help unveil the genetic basis of ADHD and to contribute to global mental health.
FAIRsharing.m8AMNi	Lichenized and Non-Lichenized Ascomycetes	LIAS	LIAS is a global information system for Lichenized and Non-Lichenized Ascomycetes. It includes several interoperable data repositories. In recent years, the two core components ‘LIAS names’ and ‘LIAS light’ have been enlarged. LIAS light stores phenotypic trait data. The component ‘LIAS names’ is a platform for managing taxonomic names and classifications. 'LIAS names' and ‘LIAS light’ also deliver content data to the Catalogue of Life, acting as the Global Species Database (GSD) for lichens. LIAS gtm is a database for visualising the geographic distribution of lichen traits. LIAS is powered by the Diversity Workbench database framework with several interfaces for data management and publication.
FAIRsharing.m8wewa	Cancer Genome Atlas	TCGA	The Cancer Genome Atlas (TCGA) is a comprehensive, collaborative effort led by the National Institutes of Health (NIH) to map the genomic changes associated with specific types of tumors to improve the prevention, diagnosis and treatment of cancer. Its mission is to accelerate the understanding of the molecular basis of cancer through the application of genome analysis and characterization technologies.
FAIRsharing.m90ne8	Human Mitochondrial Database	HmtDB	HmtDB is an open resource created to support population genetics and mitochondrial disease studies. The database hosts human mitochondrial genome sequences annotated with population and variability data, the latter being estimated through the application of the SiteVar/MitVarProt programs, based on site-specific nucleotide and aminoacid variability calculations. The annotations are manually curated thus adding value to the quality of the information provided to the end-user.
FAIRsharing.m9x0zg	Springer Nature - Nature Nanotechology - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.mad142	Minimum Information about a Nutrigenomics experiment	MIAME/Nutr	MIAME/Nutr was developed to extend MIAME for array-based nutrigenomics experiments.
FAIRsharing.mb5dc	Halocynthia aurantium Anatomy and Development Ontology	HAAURAADO	The first ontology describing the anatomy and the development of Halocynthia aurantium.
FAIRsharing.mbgt2n	Oryzabase	Oryzabase	The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan. The Oryzabase consists of five parts, (1) genetic resource stock information, (2) gene dictionary, (3) chromosome maps, (4) mutant images, and (5) fundamental knowledge of rice science.
FAIRsharing.mc998w	Neomark Oral Cancer Ontology version 4	NeoMark4	An ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.
FAIRsharing.mcgj5b	Distributed Sequence Annotation System	DAS	The Distributed Annotation System (DAS) defines a communication protocol used to exchange annotations on genomic or protein sequences.
FAIRsharing.mcqs21	Insect Microsatellite Database	InSatDb	InSatDb, unlike many other microsatellite databases that cater largely to the needs of microsatellites as markers, presents an interactive interface to query information regarding microsatellite characteristics of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm).
FAIRsharing.mcrd3t	Human-Transcriptome Database for Alternative Splicing	H-DBAS	H-DBAS offers unique data and viewer for human Alternative Splicing (AS) analysis including genome-wide representative alternative splicing variants (RASVs), RASVs affecting protein functions, conserved RASVs compared with mouse genome (full length cDNAs).
FAIRsharing.md3e78	Audubon Core Multimedia Resources Metadata Schema	AC	The Audubon Core metadata schema ("AC") is a representation-neutral metadata vocabulary for describing biodiversity-related multimedia resources and collections. Multimedia Resources are digital or physical artifacts which normally comprise more than text. These include pictures, artwork, drawings, photographs, sound, video, animations, presentation materials, interactive online media including identification tool packages involving text and other media. A multimedia collection is an assemblage of such objects whether curated or not and whether electronically accessible or not. For the purposes of this schema we regard a collection of multimedia resources itself as a 'multimedia resource'. Multimedia descriptions are digital records that document underlying multimedia resources. Audubon Core is focused on biodiversity-related multimedia resources. It shares terminology and concerns with many well known and important standards for describing access to resources such as Dublin Core(DC), Darwin Core (DwC), the Adobe Extensible Metadata Platform (XMP), the International Press and Telecommunications Council (IPTC) the Metadata Working Group (MWG) schema, the Natural Collections Schema (NCD), and others. Where there is an exact match to concerns of such standards, Audubon Core adopts their identifiers and definitions. Audubon Core particularly intends to ease the burden of holders of descriptions specified either by DwC or DC by allowing use of those existing descriptions where appropriate.
FAIRsharing.me4qwe	DataCite Metadata Schema	None	The DataCite Metadata Schema is a list of core metadata properties chosen for the accurate and consistent identification of a resource for citation and retrieval purposes, along with recommended use instructions. The resource that is being identified can be of any kind, but it is typically a dataset. The term ‘dataset’ can include not only numerical data, but any other research data outputs.
FAIRsharing.me577e	Drosophila Species Genomes	DroSpeGe	The D. melanogaster and eight other eukaryote model genomes, and gene predictions from several groups. Summaries of essential genome statistics include sizes, genes found and predicted, homology among genomes, phylogenetic trees of species, and comparisons of several gene predictions for sensitivity and specificity in finding new and known genes.
FAIRsharing.meh9wz	Acytostelium Gene Database	None	Genome and transcriptome database of Acytostelium subglobosum
FAIRsharing.mewhad	ClinicalTrials.gov	ClinicalTrials.gov	ClinicalTrials.gov is a registry and results database of publicly and privately supported clinical studies of human participants conducted around the world.
FAIRsharing.mg1mdc	A Gold Path format	AGP format	AGP format describes the assembly of a larger sequence object from smaller objects. The large object can be a contig, a scaffold (supercontig), or a chromosome. Each line (row) of the AGP file describes a different piece of the object, and has the column entries defined below. Extended comments follow. It does not serve for either a description of how sequence reads were assembled, or a description of the alignments between components used to construct a larger object. Not all of the information in proprietary assembly files can be represented in the AGP format. It is also not for recording the spans of features like repeats or genes.
FAIRsharing.Mghsr2	Global Change Master Directory Keywords	GCMD Keywords	Global Change Master Directory (GCMD) Keywords are a hierarchical set of controlled Earth Science vocabularies that help ensure Earth Science data, services, and variables are described in a consistent and comprehensive manner and allow for the precise searching of metadata and subsequent retrieval of data, services, and variables. Initiated over twenty years ago, GCMD Keywords are periodically analyzed for relevancy and will continue to be refined and expanded in response to user needs.
FAIRsharing.mhqkc7	GENI-ACT	GENI-ACT	GENI-ACT is a resource that allows the research community to collaboratively annotate bacterial genomes. Changes can be suggested to existing genomes and these alterations can be ported back to NCBI Genbank. GENI-ACT also has modules which can be used for educational purposes.
FAIRsharing.mihb12	Kinase-Ligand Interaction Fingerprints and Structures database	KLIFS	Kinase-Ligand Interaction Fingerprints and Structures database (KLIFS) is a database that revolves around the protein structure of catalytic kinase domains and the way kinase inhibitors can interact with them. Based on the underlying systematic and consistent protocol all (currently human and mouse) kinase structures and the binding mode of kinase ligands can be directly compared to each other. Moreover, because of the classification of an all-encompassing binding site of 85 residues it is possible to compare the interaction patterns of kinase-inhibitors to each other to, for example, identify crucial interactions determining kinase-inhibitor selectivity.
FAIRsharing.mIJ56E	Vocabularies in the Virtual Observatory	None	The Vocabularies in the Virtual Observatory (VO) document specifies a standard format for vocabularies based on the W3C's Resource Description Framework (RDF) and Simple Knowledge Organization System (SKOS). By adopting a standard and simple format, the IVOA will permit different groups to create and maintain their own specialised vocabularies while letting the rest of the astronomical community access, use, and combine them. The use of current, open standards ensures that VO applications will be able to tap into resources of the growing semantic web. The document provides several examples of useful astronomical vocabularies.
FAIRsharing.mjq9vj	Kaggle Datasets	Kaggle Datasets	Kaggle Datasets is a public open data platform which combines data, users, discussions, and software. Datasets can be searched, bookmarked and explored via Kernels and discussions. All types of data are allowed. Individual users and organizations can register. Datasets can be published either privately or shared publicly.
FAIRsharing.mk2fp3	CDISC Dataset-XML	Dataset-XML	Dataset-XML supports exchanging tabular data in clinical research applications using ODM-based XML technologies, enabling the communication of study datasets for regulatory submissions.
FAIRsharing.mKDii0	Norwegian Centre for Research Data	NSD	The Norwegian Centre for Research Data (NSD) is one of the largest archives for research data of its kind and provides data to researchers and students in Norway and abroad. Additionally, the NSD is a resource centre which assists researchers with regard to data gathering, data analysis, and issues of methodology, privacy and research ethics. The NSD is a certified archive (certified with the Core Trust Seal), and a member of DataCite. The NSD is also the data processor, data distributor and archive for the ESS – European Social Survey (http://www.europeansocialsurvey.org). The NSD is the Norwegian Service Provider for CESSDA (http://cessda.eu)
FAIRsharing.Mkl9RR	Ontology Lookup Service	OLS	The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. You can browse the ontologies through the website as well as programmatically via the OLS API.
FAIRsharing.mKrBDb	Rice Seed Nuclear Protein Database	RSNP-DB	RSNP-DB is a database is a compilation of nuclear localization prediction confidence of the seed-expressed proteins in rice.
FAIRsharing.mn5m1p	Pseudomonas Genome DB	PGDB	The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation.
FAIRsharing.mp8js2	Medical Web Lifestyle Aggregator	MWLA	This ontology designed and developed in order to represent the detected intentions from the Web Lifestyle Data Aggregator. In particular, it seeks to represent what is involved in the gathering of data from the web and social lifestyle of user on the Internet. We decided, therefore, to develop the ontology using the Protégé v5.0, a free, open-source ontology editor from the Stanford University. The outcome of Protégé is available on the following URL: http://carre.kmi.open.ac.uk/ontology/lifestyle.owl The presented ontology is generic and can support different type of providers (e.g. web searches, Facebook, Twitter etc.). Additionally, the predefined intentions are also generic supporting the majority of intentions in the Web. In the context of CARRE, we utilize, as a first attempt, the web searches as provider and we only upload the relevant intentions (health and travel) to CARRE in the private RDF repository. A user (representing an individual person whose data is being represented using the terms of this ontology) has connections. A connection represents that a Web Lifestyle Data Aggregator of a particular personal computer of user provides intentions for particulars providers. A connection is therefore associated with a UUID (Universal Unique Identifier) that represents an installation of the aggregator. A provider can be the web searches, Facebook or Twitter. A measurement is associated with a provider and a connection in order to declare the connection (i.e. the Web Lifestyle Data Aggregator of a particular personal computer) from which a measurement came. Every measurement must have a date at which the detected intention was taken, a weight which defines the importance of an intention and of course the detected intention that is only relevant to CARRE.
FAIRsharing.mphj4z	Yeast Searching for Transcriptional Regulators and Consensus Tracking	YEASTRACT	YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references.
FAIRsharing.mpxb4a	NIH NLM Value Sets	NLMVS	NIH NLM Value Set as a SKOS terminology
FAIRsharing.mqspgs	Journal of Biodiversity and Environmental Sciences	JBES	Journal of Biodiversity and Environmental Sciences (JBES) is a fast and peer-reviewed journal and is scheduled to publish 12 issues in a year. It publishes original research papers, short communications and review papers on the main aspects of Environmental sciences, Biology, Atmospheric sciences, Environmental chemistry, Earth science, Ecology, Forestry, Agro-forestry, Biodiversity, Taxonomy, Ethnobotany, Vegetation survey, Bioremediation, Geosciences, Organisms and Conservation of Natural sciences.
FAIRsharing.mrfyxv	Haeckaliens	Haeckaliens	Haeckaliens is a collection of 3D datasets and reconstructions of embryos obtained with the open-source optical tomography scanner "OPenT" .
FAIRsharing.mrpMBj	Open mHealth	Open mHealth	Open Standard for Mobile Health Data. This standard is composed of a number of related schemas. Widely-used clinical measures were identified and clinical experts were consulted to identify the most important distinctions for the schemas' clinical use. Use cases were then defined that included these measures in new models of care enabled by mHealth technology. While there isn’t one “correct” schema for any given measure, they aim to offer an ideal format and description of digital health data for supporting clinical and self care.
FAIRsharing.mrrnp0	Wellcome Trust: Sharing research data to improve public health: joint statement of purpose	None	Each funding institution will work within its own legal and operational framework, and we are committed to working towards these goals together. We intend to establish joint working groups where appropriate. We call on governments and other actors that generate routine health service statistics and other types of public health data to adopt a similar approach. This Statement establishes guiding principles and desired goals. It recognises that flexibility and a variety of approaches will be needed in order to balance the rights of the individuals and communities that contribute data, the investigators that design research and collect and analyse data, and the wider scientific community that might productively use data for further research.
FAIRsharing.mrrzb3	MIAPE: Mass Spectrometry Informatics	MIAPE-MSI	This module identifies the minimum information required to report the use of protein and peptide identification and characterisation software to analyse the data produced by mass spectrometry experiments, sufficient to support both the effective interpretation and assessment of the data and the potential recreation of the work that generated it.
FAIRsharing.ms2BuC	Dutch ColoRectal Audit - Radiotherapy	DCRA-R	The Dutch ColoRectal Audit - Radiotherapy is the national clinical quality of care registry for radiotherapy treatment of colorectal carcinoma. The registry contains information about target areas, dose volumes histograms and organs at risk and is used by a growing number of Radiotherapy centres to store information for quality indicators, benchmarking and scientific research. This standard defines the metadata required to insure availability, versioning and interoperability of the DCRA-R data.
FAIRsharing.msgwvy	Portfolio Management Application	PMA	The Portfolio Management Application (PMA) is a system for tracking grants and producing reports - Users can access grant data through a query interface and a variety of pre-defined forms and reports
FAIRsharing.mt6057	CellFinder	CellFinder	CellFinder maps validated gene and protein expression, phenotype and images related to cell types.The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development. CellFinder provides long-term data storage for validated and curated primary research data and provides additional expert-validation through relevant information extracted from text.
FAIRsharing.mtf81z	International Classification of Diseases for Oncology, 3rd Edition	ICD-O-3	The International Classification of Diseases for Oncology, 3rd Edition (ICD-O-3) is used principally in tumour or cancer registries for coding the site (topography) and the histology (morphology) of neoplasms, usually obtained from a pathology report. It provides a multi-axial classification of the site, morphology, behaviour, and grading of neoplasms. The topography axis uses the ICD-10 classification of malignant neoplasms (except those categories which relate to secondary neoplasms and to specified morphological types of tumours) for all types of tumours, thereby providing greater site detail for non-malignant tumours than is provided in ICD-10. In contrast to ICD-10, the ICD-O-3 includes topography for sites of haematopoietic and reticuloendothelial tumours.
FAIRsharing.mtg4ew	The Database of Human DNA Methylation and Cancer	MethyCancer	The database of human DNA Methylation and Cancer (MethyCancer) is developed to study interplay of DNA methylation, gene expression and cancer. It hosts both highly integrated data of DNA methylation, cancer-related gene, mutation and cancer information from public resources, and the CpG Island (CGI) clones derived from our large-scale sequencing.
FAIRsharing.mtkc4	EffectiveDB	EffectiveDB	The Effective database contains pre-calculated predictions of bacterial secreted proteins and of functional secretion systems. Effective bundles various tools to recognize Type III secretion signals, conserved binding sites of Type III chaperones, eukaryotic-like domains and subcellular targeting signals in the host. Beyond the analysis of arbitrary protein sequence collections, the new release of Effective also provides a "genome-mode", in which protein sequences from nearly complete genomes or metagenomic bins can be screened for the presence of three important secretion systems (type III, IV, VI).
FAIRsharing.MtkkWk	Coronavirus and MS Reporting Database	None	COViMS (COVID-19 Infections in MS & Related Diseases) is a joint effort of the National MS Society, Consortium of MS Centers and Multiple Sclerosis Society of Canada to capture information on outcomes of people with MS and other CNS demyelinating diseases (Neuromyelitis Optica, or MOG antibody disease) who have developed COVID-19.
FAIRsharing.mtmsgm	Cereal Plant Gross Anatomy Ontology	GRO CPGA	Cereal plant gross anatomy is a structured controlled vocabulary for the anatomy of Gramineae. Please note that this ontology has now been superseded by the Plant Ontology.
FAIRsharing.mtvxae	Family Health History Ontology	FHHO	The FHHO facilitates representing the family health histories of persons related by biological and/or social family relationships (e.g. step, adoptive) who share genetic, behavioral, and/or environmental risk factors for disease. SWRL rules are included to compute 3 generations of biological relationships based on parentage and family history findings based on personal health findings.
FAIRsharing.mvbjrq	CDISC Study/Trial Design Model	CDISC SDM	The CDISC Study/Trial Design Model in XML (SDM) is an extension of ODM and enables organizations to provide rigorous, machine-readable, interchangeable descriptions of the designs of their clinical studies, including treatment plans, eligibility and times and events. SDM defines three key sub-modules – Structure, Workflow, and Timing – permitting various levels of detail in any representation of a clinical study’s design.
FAIRsharing.mvp707	Glioblastoma	GBM	Ontology of Glioblastoma
FAIRsharing.mw2ekr	Death Domain Database	None	Death Domain Database is a manually curated database of protein-protein interactions for Death Domain Superfamily.
FAIRsharing.mwmbpq	Browser Extensible Data Format	BED	BED (Browser Extensible Data) format provides a flexible way to define the data lines that are displayed in an genome annotation track. BED lines have three required fields and nine additional optional fields. The number of fields per line must be consistent throughout any single set of data in an annotation track. The order of the optional fields is binding: lower-numbered fields must always be populated if higher-numbered fields are used.
FAIRsharing.mx41z8	FusionDB	FusionDB	FusionDB is a database of bacterial and archaeal gene fusion events - also known as Rosetta stones
FAIRsharing.mx4fvx	Hewan Invertebrata	invertebrata	"Hewan Invertebrata" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1658. This text was generated automatically. If you work on the project responsible for "Hewan Invertebrata" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.mx5cxe	Bacterial Protein Interaction Database	Bacteriome.org	Bacteriome.org is a database integrating physical (protein-protein) and functional interactions within the context of an E. coli knowledgebase.
FAIRsharing.mxz4jy	Minimum Information for Publication of Quantitative Real-Time PCR Experiments	MIQE	The aim of MIQE is to provide authors, reviewers and editors with specifications for the minimum information that must be reported for a qPCR experiment in order to ensure its relevance, accuracy, correct interpretation and repeatability.
FAIRsharing.my19zk	Minimum Information About a RNAi Experiment	MIARE	Minimum Information About an RNAi Experiment (MIARE) is a set of reporting guidelines that describes the minimum information that should be reported about an RNAi experiment to enable the unambiguous interpretation and reproduction of the results. MIARE forms part of a larger effort to develop RNAi data standards that include a data model, data exchange format, controlled vocabulary and supporting software tools.
FAIRsharing.mzk12n	Brassica Genome	Brassica Genome	This site hosts Brassica genome databases.
FAIRsharing.N0nNXm	eCommons	eCommons	eCommons is a service of the Cornell University Library that provides long-term access to a broad range of Cornell-related digital content of enduring value. Content types include: pre- and post-publication papers, technical reports, theses and dissertations, books, lectures and presentations, datasets, digital departmental newsletters, administrative reports, compilations of University data, and meeting agendas and minutes. Content produced by others but of research and/or teaching value may also be appropriate for eCommons. Such material is normally solicited, collected, or identified by Cornell faculty, researchers, staff, and students, who then arrange all necessary clearances needed to deposit the material. Examples of such content include: datasets, electronic books and multimedia, presentations given at Cornell events, digitized research materials.
FAIRsharing.n14rc8	Identifiers.org Central Registry	None	The Identifiers.org Central Registry provides the necessary information for the generation and resolution of unique and perennial identifiers for life science data. Those identifiers are both in URI and compact form, and make use of Identifiers.org to provide direct access to the identified data records on the Web. Resource maintainers request an Identifiers.org prefix for their databases or services.
FAIRsharing.n1s1j8	Cell Press - Cell Stem Cell - Information for Authors	None	Cell Stem Cell, launched in 2007 by Cell Press, publishes research articles and review materials with a focus on stem cells. Cell Stem Cell is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Cell Stem Cell. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.n2xy00	siRecords	siRecords	siRecords is a collection of a diverse range of mammalian RNAi experiments . After choosing a gene, researchers can find all siRNA records targeting the gene, design a new siRNA targeting it, or submit siRNAs that have been tested. The resource also helps experimental RNAi researchers by providing them with the efficacy and other information about the siRNAs experiments designed and conducted previously against the genes of their interest. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
FAIRsharing.n2y9dd	Nimblegen Design File Format	None	NimbleGen Design File Format is a standard data file format. NimbleGen is now a trademark of Roche.
FAIRsharing.n3rt95	HMMER Profile File Format	None	The profile hidden Markov Model (HMM) calculated from multiple sequence alignment data in this service is stored in Profile HMM save format (usually with ".hmm" extension). It is an ASCII file containing a lot of header and descriptive records followed by large numerical matrix which holds a probabilistic model of the motif. The file of this format is useful to search against sequence databases to find other proteins which share the same motif.
FAIRsharing.N4a3Pj	BBMRI-ERIC CRC-Cohort	CRC-Cohort	The colorectal cancer cohort (CRC-Cohort) is developed within the EU-funded project ADOPT BBMRI-ERIC (H2020) as a use case for piloting access to European biobanks. The CRC-Cohort is developed by BBMRI-ERIC, its National Nodes and BBMRI-ERIC partner biobanks, and it will become a permanent asset of the BBMRI-ERIC infrastructure after the end of the ADOPT project. The CRC-Cohort collection is a joint long-term European endeavor, which enables existing, well-established biobanks to connect with BBMRI-ERIC and obtain increased recognition and visibility along with new users and data. The CRC-Cohort is expected to enable high-quality research and innovation to improve colorectal cancer treatment. The cohort should enable a large spectrum of different types of research and is therefore not restricted to any specific research question. The procedures and IT tools developed within the CRC-Cohort are expected to be reusable for similar future efforts on different disease entities implemented using BBMRI-ERIC as an infrastructure.
FAIRsharing.n511c4	apalegal	LEGALAPATEST2	Legal cluster for APA ontology
FAIRsharing.n6vfkv	OECD Principles and Guidelines for Access to Research Data from Public Funding	None	Science and Technology Ministers called on the OECD in 2004 to develop a set of guidelines based on commonly agreed principles to facilitate cost-effective access to digital research data from public funding. The Principles and Guidelines for Access to Research Data from Public Funding are the outcome of this request. They are intended to assist all actors involved when trying to improve the international sharing of, and access to, research data.
FAIRsharing.n7nqde	Minimal Information About T Cell Assays	MIATA	MIATA (Minimal Information About T cell Assays) enables an objective and thorough interpretation of published results from T cell assays. Due to the high similarity between T cell assays and NK cell assays the concept has been expanded to include the Minimal Information About NK cell Assays (MIANKA).
FAIRsharing.n7src9	Minimum Information Required for A Glycomics Experiment - Mass Spectrometric Analysis	MIRAGE MS	MIRAGE (Minimum Information Required for A Glycomics Experiment) was created to improve the quality of glycomics data in the scientific literature. Researchers seeking to understand the biochemical structure–function relationships of carbohydrates require detailed descriptions of the assay conditions and the experimental results. Currently, these data are insufficiently reported in the literature. A basic description on the sample preparation workflow is required. In contrast to proteomics, different types of glycoconjugates require partially different release approaches, which in turn can have direct influence on the following conditions/parameters: released glycans or still attached to protein/lipid; type of glycan (N-glycan, O-glycan, proteoglycan fragment); and sample pre-treatment prior MS-Analyses (non, reduced, permethylated, endo/exoglycosidase digested, fluorescent label, online/offline LC-separation).
FAIRsharing.n7vyyc	AdaLab ontology	ADALAB	AdaLab ontology
FAIRsharing.N8KDKt	Metabolomics Workbench Tabular File Format	mwTab	mwTab is a format developed by the Metabolomics Workbench to facilitate programmatic processing of data suitable for submission to the Workbench. It provides a structure for both metadata and experimentally measured data. The mwTab format consists of sequentially ordered blocks (sections) of text data. Some of the blocks consist of data represented by ‘single key to single value’ relationships that store single pieces of information. Other blocks consist of multiple ‘tab’-separated values via ‘single key to multiple values’ or ‘multiple keys to multiple values’ relationships that store multiple pieces of information in an organized manner analogous to a relational table.
FAIRsharing.n8qft8	Mexican Health and Aging Study	MHAS	The MHAS study is a series of questionnaires distributed in waves, the fourth of which was fielded in the Fall of 2015. Research goals include, but are not limited to the following: examination of the aging processes and its disease and disability burden in a large representative panel of older Mexicans; evaluation of the effects of individual behaviors, early life circumstances, migration and economic history, community characteristics, and family transfer systems on multiple health outcomes; and comparison of the health dynamics of older Mexicans with comparably aged Mexican-born migrants in the U.S. and second generation Mexican-American using similar data from the U.S. population (for example the biennial Health and Retirement Study HRS) to assess the durability of the migrant health advantage.
FAIRsharing.naAm6C	Index of Exsiccatae	IndExs	IndExs is a database comprising information on exsiccatae (=exsiccatal series) with titles, abbreviations, bibliography and provides a unique and persistent Exsiccata ID for each series. Exsiccatae are defined as "published, uniform, numbered sets of preserved specimens distributed with printed labels" (Pfister 1985). Please note that there are two similar latin terms: "exsiccata, ae" is feminine and used for a set of dried specimens as defined above, whereas the term "exsiccatum, i" is neutral and used for dried specimens in general. If available, images of one or more examplary labels are added to give layout information. IndExs is powered by the Diversity Workbench database framework.
FAIRsharing.namxfm	Functional Genomics Experiment Markup Language	FuGE-ML	Functional genomics experiments present many challenges in data archiving, sharing and querying. As the size and complexity of data generated from such experiments grows, so does the requirement for standard data formats. To address these needs, the Functional Genomics Experiment [Object Model / Markup-Language] (FuGE-OM, FuGE-ML) has been created to facilitate the development of data standards.FuGE is a model of the shared components in different functional genomics domains. FuGE facilitates the development of data standards in functional genomics in two ways: 1. FuGE provides a model of common components in functional genomics investigations, such as materials, data, protocols, equipment and software. These models can be extended to develop modular data formats with consistent structure. 2. FuGE provides a framework for capturing complete laboratory workflows, enabling the integration of pre-existing data formats. In this context, FuGE allows the capture of additional metadata that gives formats a context within the complete workflow. FuGE is available as a UML model and an XML Schema
FAIRsharing.nb9zzm	F1000Research Data Policy	None	This is a non-exhaustive list of databases, standards, and policies that have been approved for an F1000Research article.
FAIRsharing.nc71b5	Ontology of Craniofacial Development and Malformation	OCDM	The Ontology of Craniofacial Development and Malformation (OCDM) is a mechanism for representing knowledge about craniofacial development and malformation, and for using that knowledge to facilitate integrating craniofacial data obtained via multiple techniques from multiple labs and at multiple levels of granularity. The OCDM is a project of the NIDCR-sponsored FaceBase Consortium, whose goal is to promote and enable research into the genetic and epigenetic causes of specific craniofacial abnormalities through the provision of publicly accessible, integrated craniofacial data.
FAIRsharing.ncr75x	wiki-pain	wiki-pain	wiki-pain.org is a wiki containing molecular interactions that are relevant to pain. Each molecular interaction is shown in relation to pain, disease, mutations, anatomy and a summary of its mentions throughout the literature is provided.
FAIRsharing.nd9ce9	Minimum Information about Plant Phenotyping Experiment	MIAPPE	MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. A basic reference implementation of MIAPPE has been proposed for the ISA-Tab format. Other current developments include a Breeding API (BrAPI) implementation.
FAIRsharing.ne5dn7	EarthChem	EarthChem	EarthChem develops and maintains databases, software, and services that support the preservation, discovery, access and analysis of geochemical data, and facilitate their integration with the broad array of other available earth science parameters. The EarthChem Portal stores geochemical data, provides a variety of search, visualization, and output formatting options, and is interoperable with the LEPR database and the MELTS software. EarthChem Library is a data repository that archives, publishes and makes accessible data and other digital content from geoscience research.
FAIRsharing.ne6jza	zfishbook	zfishbook	Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides services for any size of GBT mutagenesis projects on zebrafish to encourage collaboration in the research community.
FAIRsharing.neny94	Consolidated Health Economic Evaluation Reporting Standards	CHEERS	The Consolidated Health Economic Evaluation Reporting Standards (CHEERS) statement is an attempt to consolidate and update previous health economic evaluation guidelines efforts into one current, useful reporting guidance. The primary audiences for the CHEERS statement are researchers reporting economic evaluations and the editors and peer reviewers assessing them for publication.
FAIRsharing.nesfnr	Neglected Tropical Disease Ontology	NTDO	The Neglected Tropical Disease Ontology (NTDO) models Neglected Tropical Diseases (NTD), a specific set of diseases which persist among marginalized populations of the developing world. The NTDO focuses on vector-borne disease control as the transmission path, as this drives prevention strategies and decision support. NTDO includes information about the disease, its causative agents (when available), dispositions, and the geographic location the disease happens.
FAIRsharing.nft558	Plant Diversity Ontology	PDO_CAS	Plant Diversity Ontology (PDO) is the outcome of the construction tasks of domain ontology of science in the project of Scientific & Technological Knowledge Organization Systems (STKOS). The structure of PDO centers on species, including micro level of molecular, cell and tissue, medium level of plant organs, species and population, and macro level of ecosystem. The classes of PDO also capture the habitat, environmental conditions and expand the general characteristics of plants, completing the instances richness for plant species, geographical, classification and morphology. Furthermore, PDO builds the relationships among species, region, morphology, plant organs, developmental stage, revealing the list of species in an area, the morphology and life form of plants, and development process of species. In sum, PDO shows a growth process or development stage of a species and its structure characteristics in particular space and time scale, realizing the description of species diversity, ecosystem diversity and genetic diversity. At present, PDO has been applied to the platform of Go to Selected Open Access Journals (GoOA) developed by National Science Library of Chinese Academy of Sciences, supporting concept retrieval and concept extension for GoOA.
FAIRsharing.nggj0j	Joint Photographic Experts Group Format	JPEG Format	Joint Photographic Experts Group Format is a commonly used method of lossy compression for digital images, particularly for those images produced by digital photography. JPEG JFIF, which is what people generally mean when they refer to "JPEG", is a file format created by the Independent JPEG Group (IJG) for the transport of single JPEG-compressed images. The JPEG compression format was standardised by ISO in August 1990 and commercial applications using it began to show up in 1991. The widely used IJG implementation was first publicly released in October 1991 and has been considerably developed since that time. JPEG JFIF images are widely used on the Web. The amount of compression can be adjusted to achieve the desired trade-off between file size and visual quality. Progressive JPEG is a means of reordering the information so that, after only a small part has been downloaded, a hazy view of the entire image is presented rather than a crisp view of just a small part. It is part of the original JPEG specification, but was not implemented in Web browsers until rather later on, around 1996. It is now fairly widely supported. Although the "baseline" variety of JPEG is believed patent-free, there are many patents associated with some optional features of JPEG, namely arithmetic coding and hierarchical storage. For this reason, these optional features are never used on the Web.
FAIRsharing.ngme77	Human disease methylation database	DiseaseMeth	The human disease methylation database, DiseaseMeth is a web based resource focused on the aberrant methylomes of human diseases. Until recently, bulks of large-scale data are avaible and are increasingly grown, from which more information can be mined to gain further information towards human diseases. Our mission is to provide a curated set of methylation information datasets and tools in the human genome, to support and promote research in this area. Especially, we provide a genome-scale landscape to show human methylaton information in a scalable and flexible manner.
FAIRsharing.ngn3a6	Genome Component Ontology	GCO	The Genome Component Ontology is intended to define the abstract division of the total genetic information of an organism by its physical separation into different components, thereby providing a high level reference point to which more specific descriptions of the characteristics of these components can be linked.
FAIRsharing.nh1DmP	Health Data Research Innovation Gateway	Innovation Gateway	The Health Data Research Innovation Gateway (the ‘Gateway’) provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access. The Gateway includes the ability to search for research projects, publications and health data tools, such as those related to COVID-19. New interactive features provide a community forum for researchers to collaborate and connect and the ability to add research projects. The Innovation Gateway does not hold or store any datasets or patient or health data but rather acts as a portal to allow discovery of datasets and to request access to them for health research. A dataset is a collection of related individual pieces of data but in the case of health data, identifiable information (e.g. name or NHS number) is removed and data is de-identified where possible. When you access the Gateway you will not be able to view or extract the data itself. Instead, you will be able to see information that describes what the different datasets are (e.g. where the dataset has come from, a description of the dataset, the time period and the geographical areas the dataset covers). In order to access the data, you will need to sign in and then follow the access request process. Only once your request has been through the process to ensure your application meets all of the requirements and is approved by the data controller will you be able to access the data. Your access to the data will be provided outside of the Gateway in line with the processes of the data controller - read through our FAQs for more information on the process. The datasets that are discoverable through the Innovation Gateway are from organisations in the NHS, research institutes and charities, which are part of the UK Health Data Research Alliance. You can find out more about its members on the UK Health Data Research Alliance website. The information provided about the datasets has been provided by the relevant data controller and is continually updated.
FAIRsharing.NHCOKK	FAIR Maturity Indicator Gen2-MI-F1A	None	The FAIR Maturity Indicator Gen2-MI-F1A measures whether the GUID matches (regexp) a GUID scheme recognized as being globally unique in the FAIRSharing registry. The uniqueness of an identifier is a necessary condition to unambiguously refer that resource, and that resource alone. Otherwise, an identifier shared by multiple resources will confound efforts to describe that resource, or to use the identifier to retrieve it.
FAIRsharing.Nhfwat	The conserved clinical variation visualization tool	ConVarT	The availability of genetic variants, together with phenotypic annotations from model organisms, facilitates comparing these variants with equivalent variants in humans. However, existing databases and search tools do not make it easy to scan for equivalent variants, namely “orthologous variants,” between humans and other organisms. Therefore, we developed an integrated search engine called ConVarT (http://www.convart.org/) for orthologous variants between humans, mice, and C. elegans. ConVarT incorporates annotations (including phenotypic and pathogenic) into variants, and these previously unexploited phenotypic OrthoVars from mice and C. elegans can give clues about the functional consequence of human genetic variants. Our analysis shows that many phenotypic variants in different genes from mice and C. elegans, so far, have no counterparts in humans, and thus, can be useful resources when evaluating a relationship between a new human mutation and a disease.
FAIRsharing.nhmd3w	DragonDB	DragonDB	The NEW Antirrhinum majus (Snapdragon) genetic and genomic database
FAIRsharing.nhVgNw	Research Data Leeds Repository	RDL	Research Data Leeds is the institutional research data repository for the University of Leeds. The service aims to facilitate data discovery and data sharing. The repository houses data generated by researchers at the University of Leeds.
FAIRsharing.NIvbz9	Art and Archaeology Vocabulary	None	Controlled vocabulary used for indexing bibliographical records for the "Art and Archaeology" FRANCIS database (1972-2015). It consists of 1960 entries available in mainly 2 languages (English, French) and grouped into 133 collections.
FAIRsharing.nj4vca	canSAR	canSAR	canSAR is an integrated cancer research and drug discovery resource that brings together large-scale data from different disciplines and allows query and exploration to help cancer research and drug discovery.
FAIRsharing.njqq5b	ISA-TAB-Nano	ISA-TAB-Nano	ISA-TAB-Nano specifies the format for representing and sharing information about nanomaterials, small molecules and biological specimens along with their assay characterization data (including metadata, and summary data) using spreadsheet or TAB-delimited files.
FAIRsharing.nK2JoH	French Communes	French Communes	This thesaurus lists all the French communes including metropolitan France and overseas regions and departments. The current communes (including those created in 2018) are attached to their department; the delegated, merged or associated communes are attached to the corresponding current commune. The different entries are mapped to l'INSEE, GeoNames, PACTOLS, Rameau, Wikidata and Wikipedia. Available in English and French.
FAIRsharing.nknzhj	Compact Identifier Format	None	Compact Identifiers consist of a unique prefix indicating the assigning authority and a locally assigned accession number (prefix:accession). This provides a mechanism for uniquely identifying locally assigned identifiers globally. The Identifiers.org (https://identifiers.org) and N2T.net (https://n2t.net/) resolvers provide stable resolution of Compact Identifiers by sharing a common namespace prefix registry.
FAIRsharing.NKUobC	Sciflection	Sciflection	Sciflection is a chemical database which allows researchers to publish and share their experiments as well as analytical data. Sciflection accepts structured data directly uploaded from Electronic Laboratory Notebooks (open enventory, Sciformation ELN, open for others) in JSON format. The repository is searchable by chemical structure, text parts, numeric parameters, etc.
FAIRsharing.nm2z1h	Protein Data Bank: Proteins, Interfaces, Structures and Assemblies	PDBePISA	The Protein Quaternary Structure file server (PDBePISA) is an internet resource that makes available coordinates for likely quaternary states for structures contained in the Brookhaven Protein Data Bank (PDB) that were determined by X-ray crystallography.
FAIRsharing.nm7mt	MultiCellular DataBase	MultiCellDB	A database for storing MultiCellDS files. In the future, MultiCellDB will include a curated library of quality-controlled digital cell lines, starting with digital representations of breast cancer (MCF7, MCF10A, MDA-MB-231), lung cancer (HCC827, H1975), and metastatic colon cancer (HCT-116 and patient-derived lines) cell lines. The user interface and API are under active development.
FAIRsharing.nmavtd	Influenza Virus Database	IVDB	IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic polymorphisms and phylogenetic relationships comparatively.
FAIRsharing.NmIgg9	Datanator	Datanator	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.
FAIRsharing.nn7bf2	Standard Flowgram Format	None	Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing. SFF files can be viewed, edited and converted with DNA Baser SFF Workbench (graphic tool), or converted to FASTQ format with sff2fastq or seq_crumbs.
FAIRsharing.nn9r0d	IDSM	IDSM	IDSM is an integrated database of small molecules.
FAIRsharing.nnvcr9	FAIRDOMHub	FAIRDOMHub	The FAIRDOMHub is a publicly available resource build using the SEEK software, which enables collaborations within the scientific community. FAIRDOM will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.
FAIRsharing.np643r	Guidelines for Information About Therapy Experiments	GIATE	Guidelines for Information About Therapy Experiments (GIATE)is a minimum information checklist creating a consistent framework to transparently report the purpose, methods and results of the therapeutic experiments.
FAIRsharing.npf403	Swedish Ocean Archive	SHARK	SHARK ("Svenskt HavsARKiv" / "Swedish Ocean Archive") contains marine environmental monitoring data from the seas surrounding Sweden. SHARK is accessed via SHARKweb (for human-readable content) and SHARKdata (for computational access). Content includes marine physical, chemical and biological data collected within Swedish environmental monitoring programs.
FAIRsharing.nPfuTE	Neurodata Without Borders: Neurophysiology 2.0	NWB:N 2.0	Neurodata Without Borders: Neurophysiology (NWB:N) 2.0 is a data standard for neurophysiology, that provideds neuroscientists with a common standard to share, archive, use, and build common analysis tools for neurophysiology data. NWB:N 2.0 is designed to store a variety of neurophysiology data, including from intracellular and extracellular electrophysiology experiments, optical physiology experiments, as well as tracking and stimulus data.
FAIRsharing.npmpqg	Biomedical Research Integrated Domain Group Model	BRIDG	BRIDG is a domain analysis model that represents the realm of protocol-driven clinical, pre-clinical, translational and basic research. This breadth includes concepts from Common (i.e., concepts shared by all research protocols), Protocol Representation, Study Conduct, Adverse Events, Biospecimen, Molecular Biology, Experiment, Statistical Analysis and Regulatory subdomains. These research concepts provide a shared understanding of biomedical semantics (i.e., what each concept means and how it relates to other concepts) so that these semantics can be easily understood by subject matter experts in the biomedical domain.
FAIRsharing.nrx5kk	Infrastructure for Spatial Information in Europe	INSPIRE	The INSPIRE Directive aims to create a European Union spatial data infrastructure for the purposes of EU environmental policies and policies or activities which may have an impact on the environment. This European Spatial Data Infrastructure will enable the sharing of environmental spatial information among public sector organisations, facilitate public access to spatial information across Europe and assist in policy-making across boundaries.
FAIRsharing.nttge3	Suggested Ontology for PHARMacogenomics	SOPHARM	SO-Pharm is a formal ontology that represent domain knowledge in pharmacogenomics. To achieve this goal, SO-Pharm articulates ontologies from sub domains of phamacogenomics (i.e. genotype, phenotype, drug, trial representations). SO-Pharm enables to support knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics.
FAIRsharing.ntv8pe	Chemical Effects in Biological Systems	CEBS	The Chemical Effects in Biological Systems (CEBS) database houses data of interest to environmental health scientists. CEBS is a public resource, and has received depositions of data from academic, industrial, and governmental laboratories.
FAIRsharing.nv1n5s	Liverpool CCI OMERO	None	A repository of image / SPM data to support users of the Centre for Cell Imaging, University of Liverpool.
FAIRsharing.nv3g3d	EpiFactors	EpiFactors	EpiFactors is a web-accessible database that provides broad information about human proteins and complexes involved in epigenetic regulation. It also lists corresponding genes and their expression levels in several samples, in particular 458 human primary cell samples, 255 different cancer cell lines and 134 human post-mortem tissues. Each protein and complex entry has been provided with links to external public resources.
FAIRsharing.nv6mrg	G-Node Data Infrastructure Services	GIN	The German Neuroinformatics Node's data infrastructure (GIN) services provide a platform for comprehensive and reproducible management and sharing of neuroscience data. Building on well established versioning technology, GIN offers the power of a web based repository management service combined with a distributed file storage. The service addresses the range of research data workflows starting from data analysis on the local workstation to remote collaboration and data publication.
FAIRsharing.nv8zwx	Elsevier - Lancet Neurology - Information for Authors	None	The Information for Authors page contains a broad range of guidelines for publishing in Lancet Neurology. With regards to data deposition, novel gene sequences should be deposited in a public database (GenBank, EMBL, or DDBJ), and the accession number provided. Authors of microarray papers should include in their submission the information recommended by the MIAME guidelines. Authors should also submit their experimental details to one of the publicly available databases: ArrayExpress or GEO.
FAIRsharing.nvmk6r	Phosphorylation Site Database	PSD	The Phosphorylation Site Database provides ready access to information from the primary scientific literature concerning proteins in prokaryotic organisms (i.e. members of the domains Archaea and Bacteria) that undergo covalent phosphorylation on the hydroxyl side chains of serine, threonine, and/or tyrosine residues
FAIRsharing.nvwz0x	openICPSR	openICPSR	openICPSR shares and stores social and behavioral science research data. It maintains a data archive of more than 250,000 files of research in the social and behavioral sciences and hosts 21 specialized collections of data in education, aging, criminal justice, substance abuse, terrorism, and other fields. Data is preserved as-is and is available to data users at no cost. openICPSR is undergoing development and is currently free for all users to share their data up to a 2GB limit.
FAIRsharing.nvytcd	ISO-15926-2_2003_inverseRoles	INVERSEROLES	ISO inverse roles ontology for oil and gas
FAIRsharing.NwHuvp	Netherlands Code of Conduct for Research Integrity 2018	None	The Code of Conduct has been adopted by all universities and applies as from 1 October 2018. The Code includes the five principles which form the basis of integrity in research: - Honesty - Scrupulousness - Transparency - Independence - Responsibility In the Code, these five principles are further elaborated into 61 standards for good research practices. The Code also contains guidelines for dealing with alleged instances of research misconduct.
FAIRsharing.nwz68	VDJdb: a curated database of T-cell receptors with known antigen specificity	VDJdb	The primary goal of VDJdb is to facilitate access to existing information on T-cell receptor antigen specificities, i.e. the ability to recognize certain epitopes in certain MHC contexts. Our mission is to both aggregate the scarce TCR specificity information available so far and to create a curated repository to store such data. In addition to routine database updates providing the most up-to-date information, we make our best to ensure data consistency and fight irregularities in TCR specificity reporting with a complex database validation scheme.
FAIRsharing.Nx0ddm	Adaptive Immune Receptor Repertoire Data Model	AIRR Data Model	The MiAIRR standard defines the minimal information for submission and publication of AIRR-seq datasets. The Adaptive Immune Receptor Repertoire (AIRR) Data Model defines a schema for the MiAIRR data elements, structuring them within schema objects, defining the relationship between those objects, and defining a file format. Increased interest in the immune system's involvement in pathophysiological phenomena coupled with decreased DNA sequencing costs have led to an explosion of antibody and T cell receptor sequencing data collectively termed "adaptive immune receptor repertoire sequencing" (AIRR-seq or Rep-Seq). The AIRR Community has been actively working to standardize protocols, metadata, formats, APIs, and other guidelines to promote open and reproducible studies of the immune repertoire.
FAIRsharing.nx58jg	Open Researcher and Contributor ID Registry	ORCID Registry	ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers. The ORCID Registry is a repository of unique researcher identifiers which allows researchers to manage a record of their research activities. In addition, there are APIs that support system-to-system communication and authentication. ORCID makes its code available under an open source license, and will post an annual public data file under a CC0 waiver for free download.
FAIRsharing.ny6hcb	Situation-Based Access Control	SitBAC	Context-based healthcare access-control policies.
FAIRsharing.NYAjYd	EBI BioSamples JSON Format	None	The EBI BioSamples JSON Format is a JSON schema used for submitting data to the EBI BioSamples database. This format can also be used to update or curate existing samples.
FAIRsharing.nzdq0f	VDJServer	VDJServer	VDJServer is a free, scalable resource for performing immune repertoire analysis and sharing data.
FAIRsharing.NzKTvN	Forest Service Research Data Archive	FSRDA	A repository of published research data related to forest and grassland ecosystems. Primarily holds data sets created with U.S. Forest Service funding. Data sets are reviewed prior to publication, particularly their metadata; metadata are currently written to the Content Standard for Digital Geospatial Metadata - Biological Data Profile.
FAIRsharing.o67X7e	Metadata Object Description Schema	MODS	Metadata Object Description Schema (MODS) is a schema for a bibliographic element set that may be used for a variety of purposes, and particularly for library applications. As an XML schema it is intended to be able to carry selected data from existing MARC 21 records as well as to enable the creation of original resource description records. MODS is intended to complement other metadata formats. For some applications, particularly those that have used MARC records, there will be advantages over other metadata schemes. Some advantages are: the element set is richer than Dublin Core; the element set is more compatible with library data than ONIX; the schema is more end user oriented than the full MARCXML schema; the element set is simpler than the full MARC format. Please note that round-tripping between MARC 21 and MODS is not guaranteed.
FAIRsharing.O7UKUm	Heart Diseases related Noncoding RNA Database	HDncRNA	The Heart Disease-related Non-coding RNAs Database (HDncRNA) provides information about common heart diseases and their related noncoding RNAs. The HDncRNA database contains manually annotated associations of ncRNAs with heart disease. Sources of data in this database are published articles, ncRNA databases and public RNA-seq datasets.
FAIRsharing.o8CuJ7	Educational Resource Discovery Index	ERuDIte	ERuDIte is the educational resource discovery index that powers the BD2K Training Coordinating Center (TCC) Web Portal. ERuDIte not only serves as a resource collector and aggregator but also as a system powered by Machine Learning, Information Retrieval, and Natural Language Processing that intelligently organizes resources to provide a dynamic and personalized curriculum for biomedical researchers interested in learning about Data Science. ERuDIte provides the resource data that learners can discover on the TCC Web Portal. Over time, learners’ interactions with the TCC Web Portal will impact ERuDIte, forming a feedback cycle where both components improve each other and adapt to learners’ needs and demands. The blending of Artificial Intelligence techniques with highly targeted curation for resource discovery, retrieval, personalization, and organization distinguishes ERuDIte from MOOC aggregators and other resource collection initiatives.
FAIRsharing.o8TYnW	FAIR Metrics - Resource Identifier in Metadata	FM-F3	FM-F3 provides a measurement of whether or not the metadata document contains the globally unique and persistent identifier for the digital resource. The discovery of a digital object should be possible from its metadata. For this to happen, the metadata must explicitly contain the identifier for the digital resource it describes. In addition, since many digital objects cannot be arbitrarily extended to include references to their metadata, in many cases the only means to discover the metadata related to a digital object will be to search based on the GUID of the digital object itself. To this end, the GUID of the metadata and the GUID of the digital resource it describes must be provided. This metric applies to part F3 of the FAIR Principles.
FAIRsharing.oAJNHO	An INtegrated Data warehouse of mIcrobial GenOmes	INDIGO	INDIGO enables the integration of annotations for the exploration and analysis of newly sequenced microbial genomes.
FAIRsharing.oaLCAI	PathosSystems Resource Integration Center Repository	PATRIC	PATRIC is part of the Bacterial Bioinformatics Resource Center, and is an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data and analysis tools. PATRIC provides an interface for biologists to discover data and information and conduct comprehensive comparative genomics and other analyses. PATRIC includes over 250 000 publicly available microbial genomes and tools for comparative analysis.
FAIRsharing.oaxyMK	Cochrane Patient/Population/Problem Intervention Comparison Outcome Ontology	PICO	The PICO ontology provides a model for describing evidence in a consistent way focusing on complex populations, detailed interventions and their comparisons as well as the outcomes considered. The PICO ontology was originally designed to model the questions asked and answered in Cochrane's systematic reviews. The PICO model can be used to describe healthcare evidence as well as used in other evidence-based domains. It aims to provide a model for describing evidence in a consistent way.
FAIRsharing.ochiOn	IVOA Standard for Unified Content Descriptors	IVOA UCD	The IVOA Standard for Unified Content Descriptors document describes the current understanding of the IVOA controlled vocabulary for describing astronomical data quantities, called Unified Content Descriptors (UCDs). The present document defines a new standard (named UCD1+) improving the first generation of UCDs (UCD1). The basic idea is to adopt a new syntax and vocabulary requiring little effort for people to adapt software already using UCD1. This document also addresses the questions of maintenance and evolution of the UCD1+. Examples of use cases within the Virtual Observatory and tools for using UCD1+ are also described.
FAIRsharing.OcXwxA	Virtual Observatory Data Modeling Language	VO-DML	The Virtual Observatory Data Modeling Language (VO-DML) defines a standard modelling language, or meta-model, for expressing data models in the IVOA. Adopting such a uniform language for all models allows these to be used in a homogeneous manner and allows a consistent definition of reuse of one model by another. The particular language defined here includes a consistent identification mechanism for model which allows these to be referenced in an explicit and uniform manner also from other contexts, in particular from othe IVOA standard formats such as VOTable. The language defined in this specification is named VO-DML (VO Data Modeling Language). VO-DML is a conceptual modeling language that is agnostic of serializations, or physical representations. This allows it to be designed to fit as many purposes as possible. VO-DML is directly based on UML, and can be seen as a particular representation of a UML2 Profile. VO-DML is restricted to describing static data structures and from UML it only uses a subset of the elements defined in its language for describing "Class Diagrams". Its concepts can be easily mapped to equivalent data modelling concepts in other representations such as relational databases, XML schemas and object-oriented computer languages. VO-DML has a representation as a simple XML dialect named VO-DML/XML that must be used to provide the formal representation of a VO-DML data model. VO-DML/XML aims to be concise, explicit and easy to parse and use in code that needs to interpret annotated data sets. VO-DML as described in this document is an example of a domain specific modeling language, where the domain here is defined as the set of data and meta-data structures handled in the IVOA and Astronomy at large. VO-DML provides a custom representation of such a language and as a side effect allows the creation and use of standards compliant data models outside of the IVOA standards context.
FAIRsharing.odf1nG	Funder Registry	FundRef	The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world. FundRef is the result of collaboration between funding agencies and publishers that correlates grants and other funding with the scholarly output of that support. Publishers participating in FundRef add funding data to the bibliographic metadata they already provide to Crossref for reference linking. FundRef data includes the name of the funder and a grant or award number. Metadata includes funder names, alternate names, and abbreviations.
FAIRsharing.OdYDTJ	SweetPotatoBase	SweetPotatoBase	SweetPotatoBase is a breeding database designed for advanced breeding methods for sweet potato crops.
FAIRsharing.ogTCME	Discovery VIRUS COVID-19 Registry	None	VIRUS is a cross-sectional, observational study and registry of all eligible adult and pediatric patients who are admitted to a hospital.
FAIRsharing.okQOaq	Energy Industry Profile (EIP) v1.1 of ISO-19115-1:2014	EIP	The Energy Industry Profile (EIP) of ISO 19115-1:2014 is an open, non-proprietary exchange standard for metadata used to document information resources, and in particular resources referenced to a geographic location, e.g., geospatial datasets and web services, physical resources with associated location, or mapping, interpretation, and modeling datasets. It was developed using input and requirements provided by stakeholders of the global upstream oil & gas industry, and is an ISO Conformance Level 1 profile of the widely adopted international standards ISO 19115-1:2014 which provides XML implementation guidance with reference to ISO Technical Specification 19115-3:2016.
FAIRsharing.ORMCpD	Scientific Data ISA-explorer	None	ISA-explorer stores information in the ISA-Tab metadata format to facilitate dataset discovery for the journal Scientific Data. Published Scientific Data ISA-Tab files can be easily read and explored via this repository. The ISA model records the data’s provenance, how it was generated and where it is located – all prerequisites of publication with Scientific Data. The ISA-Tab metadata file is used to generate the Structured Summary table that appears after the abstract in every Data Descriptor article.
FAIRsharing.OrNi1L	Open Researcher and Contributor iD Identifier Schema	ORCID iD Identifier Schema	The ORCID Identifier Schema is an https URI with a 16-digit number that is compatible with the ISO Standard (ISO 27729), also known as the International Standard Name Identifier (ISNI), e.g. https://orcid.org/0000-0001-2345-6789 Initially ORCID iDs will be randomly assigned by the ORCID Registry from a block of numbers that will not conflict with ISNI-formatted numbers assigned in other ways. ORCID iDs always require all 16 digits of the identifier; they can not be shortened to remove leading zeros if they exist. No information about a person is encoded in the ORCID iD. The identifiers were designed to be usable in situations where personally-identifiable information should/can not be shared. Also, since the ORCID iD is designed to be a career-long identifier, no information that can change over a person's career is embedded in the iD, e.g., country, institution, field of study.
FAIRsharing.OsiqlF	IUPAC Compendium of Chemical Terminology	IUPAC Gold Book	The IUPAC Gold Book is a database of ~7000 chemical concepts derived from IUPAC's Recommendations published in Pure and Applied Chemistry.
FAIRsharing.OTYQFw	WITHDRAWN: A Resource for Withdrawn and Discontinued Drugs	WITHDRAWN	WITHDRAWN is a database of withdrawn and discontinued drugs that were recalled from global markets due to safety concerns. The database serves as a useful resource with information about the therapeutic (or primary) targets, off-targets, toxicity types and biological pathways associated with the drugs in the database. Furthermore, genetic variations (SNPs) associated with the therapeutic and off-targets are presented within to shed light on the common genetic variations that could lead to toxicity and thereby to drug withdrawal or discontinuation in specific populations.
FAIRsharing.OXUGmN	Earthdata powered by EOSDIS	None	For more than 30 years, NASA's Earth Observing System Data and Information System (EOSDIS) has provided long-term measurements of our dynamic planet. The thousands of unique data products in the EOSDIS collection come from a variety of sources including the International Space Station, satellites, airborne campaigns, field campaigns, in-situ instruments, and model outputs.
FAIRsharing.p0rfm1	Brazilian Flora 2020	None	In 2010, Brazil published the Catalog of Plants and Fungi of Brazil and launched the first online version of the List of Species of the Brazilian Flora, meeting Target 1 of the Global Strategy for Plant Conservation (GSPC-CBD). This botanical milestone was only achieved due to the commitment of more than 400 Brazilians and foreign taxonomists who worked on a platform where information about our flora was included and disseminated in real time. The "Brazilian List", as it was popularly known, closed in November 2015 with the publication of five papers and their respective databases dealing with the different groups of fungi and plants. We enthusiastically present in 2016, the brand new system that houses the Brazilian Flora 2020 project, aiming to achieve Target 1 established for 2020 by the GSPC-CBD. This new project icludes provisions to include descriptions, identification keys and illustrations to all species of plants, algae and fungi known in the country. The Brazilian Flora 2020 project is part of the Reflora Programme and is being conducted with the support of the Sistema de Informação sobre a Biodiversidade Brasileira (SiBBr). At the moment has nearly 700 scientists working in a network to prepare the monographs. These researchers are also responsible for nomenclatural information and geographic distribution (coverage in Brazil, endemism and biomes), as well as valuable data regarding life forms, substrate and vegetation types for each species. The search results on this page include information on endangered species (thanks to the cooperation with the Centro Nacional de Conservação da Flora) and allow access to the Index Herbariorum (due to the collaboration of The New York Botanical Garden). Besides this information, users can also access images of herbarium specimens, including nomenclatural types, from both the Reflora Virtual Herbarium and INCT Virtual Herbarium of Flora and Fungi; as well as images of live plants and scientific illustrations with all images included by the experts in each group.
FAIRsharing.p1dodf	Global Agricultural Concept Scheme	GACS	The Global Agricultural Concept Scheme (GACS) is a SKOS concept scheme with concepts and related terms used in the field of agriculture, broadly defined. GACS is developed by the Food and Agriculture Organization of the United Nations (FAO), the Centre for Agriculture and Biosciences International (CABI), and the USDA National Agricultural Library (NAL), GACS was formed at the intersection of most-frequently-used concepts from their three respective thesauri -- the AGROVOC Concept Scheme, CAB Thesaurus, and the NAL Thesaurus, for which GACS provides a mapping hub. GACS is seen as an important step towards linking and integrating agricultural data of all types to address the long-term challenge of global food security.
FAIRsharing.p1nva	KB_Bio_101	AURA	KB_Bio_101 is the ontology of the AURA + Inquire project @ SRI International, Menlo Park.  This work is owned by Vulcan Inc. and is licensed for use under the Creative Commons Attribution-NonCommerical-ShareAlike 3.0 license (http://creativecommons.org/licenses/by-nc-sa/3.0/). Vulcan Inc., June 2013
FAIRsharing.p1ss22	DICOM Controlled Terminology	DCM	DICOM Controlled Terminology (PS3.16 2017c Annex D)
FAIRsharing.p26wg1	EPSRC Policy Framework on Research Data	EPSRC Research Data Policy	This policy framework sets out EPSRC’s expectations concerning the management and provision of access to EPSRC-funded research data. EPSRC recognises that a range of institutional policies and practices can satisfy these expectations, and encourages research organisations to develop specific approaches which, while aligned with EPSRC’s expectations, are appropriate to their own structures and cultures. The expectations arise from seven core principles which align with the core RCUK principles on data sharing. Two of the principles are of particular importance: firstly, that publicly funded research data should generally be made as widely and freely available as possible in a timely and responsible manner; and, secondly, that the research process should not be damaged by the inappropriate release of such data.
FAIRsharing.p2brza	Human siRNA database	HuSiDa	HuSiDa is a public database that serves as a depository for both, sequences of published functional siRNA molecules targeting human genes and important technical details of the corresponding gene silencing experiments. It aims at supporting the setup and actual procedure of specific RNAi experiments in human cells.
FAIRsharing.p2vx5e	CDER Data Standards Plan Version 1.0	None	CDER is responsible for ensuring that prescription, generic, and over-the-counter (OTC) drug products are safe, effective, and adequately available to the public.The objectives of the data standards plan are to establish a comprehensive data standards program at CDER, ensure development of data standards for all key data needed to make regulatory decisions, and ensure successful use of those standardized data.
FAIRsharing.p3n3fn	Patent Data Resources	None	Patent data resources at the EBI contain patent abstracts, patent chemical compounds, patent sequences and patent equivalents. Multiple sets of patent sequences are available at EBI. Patent proteins cover sequences of EPO (European Patent Office) proteins, JPO (Japan Patent Office) proteins, KIPO (Korean Intellectual Property Office) proteins and USPTO (United States Patent and Trademark Office) proteins. Patent nucleotides contain the patent class data in the EMBL-Bank. Non-redundant patent sequences consist of 2 levels databases. Level-1 non-redundant patent sequences are 100% identical over the same length; Level-2 non-redundant patent sequences are identical and belong to a same patent family (a same invention).
FAIRsharing.p4dtt2	UniVec	UniVec	UniVec is a database that can be used to quickly identify segments within nucleic acid sequences which may be of vector origin (vector contamination). In addition to vector sequences, UniVec also contains sequences for those adapters, linkers, and primers commonly used in the process of cloning cDNA or genomic DNA.
FAIRsharing.p4zyjr	Semantic Mining of Activity, Social, and Health data Ontology	SMASH	The goal of the Semantic Mining of Activity, Social, and Health data (SMASH) Ontology is to develop a formal and expressive Semantic Web ontology for the concepts and relationships used in describing the semantic features of healthcare data and social networks. The SMASH ontology focuses on defining concepts and relationships for discovering factors associated with sustained weight loss, especially those related to continued intervention with frequent social contacts. The smash ontology covers the three domains: biomarker measures, physical activities, and social activities. 
FAIRsharing.p51kqa	Vertebrate Skeletal Anatomy Ontology	VSAO	VSAO is an anatomy ontology covering the vertebrate skeletal system. VSAO integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system. Note that VSAO is a deprecated ontology and has been superceded by Uberon.
FAIRsharing.p56z5r	Danish Biodiversity Information Facility IPT - GBIF Denmark	DanBIF IPT - GBIF Denmark	DanBIF maintains this data repository in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). DanBIF carries out the work on making accessible the Danish, Faroese and Greenlandic resources of biodiversity data. DanBIF maintains the consensus checklist of all species known to occur in Denmark.
FAIRsharing.p5df9c	Faceted Application of Subject Terminology	FAST	FAST (Faceted Application of Subject Terminology) is a nine-facet vocabulary derived from the Library of Congress Subject Headings (LCSH), and is one of the library domain's most widely used subject terminology schemas. The broad purpose of adapting the LCSH with a simplified syntax to create FAST is to retain the rich vocabulary of LCSH while making the schema easier to understand, control, apply, and use. The schema maintains upward compatibility with LCSH, and any valid set of LC subject headings can be converted to FAST headings.
FAIRsharing.p5f1j4	Deciphering the Mechanisms of Developmental Disorders	DMDD	Initiated in 2013, DMDD has the ambitious goal of identifying all embryonic lethal knockout lines made at the Wellcome Trust Sanger institute, through their work as a major centre for creation of individual mouse gene knockouts. DMDD uses a combination of comprehensive 3D imaging, tissue histology, immunocytochemistry and transcriptomics to identify abnormalities in embryo and placental structure for each embryonic lethal line. All data is made freely available via this web site, enabling individual researchers to identify lines relevant to their own research. The DMDD programme is coordinating its work with similar international efforts through the umbrella of the International Mouse Phenotyping Consortium.
FAIRsharing.p63yyx	RBMS Controlled Vocabularies	RBMS	These thesauri provide standardized vocabulary for retrieving special collections materials by form, genre, or by various physical characteristics that are typically of interest to researchers and special collections librarians, and for relating materials to individuals or corporate bodies.
FAIRsharing.p6412v	Epilepsy Ontology	Epilepsy Ontology	Ontology about the epilepsy domain and epileptic seizures. Based on the diagnosis proposed by the International League Against Epilepsy (ILAE).
FAIRsharing.p6hdm8	Prokaryotic Operon DataBase	ProOpDB	The Prokaryotic Operon DataBase (ProOpDB) constitutes one of the most precise and complete repository of operon predictions in our days. Using our novel and highly accurate operon algorithm, we have predicted the operon structures of more than 1,200 prokaryotic genomes.
FAIRsharing.p7btsb	CropPAL	CropPAL	The compendium of crop Proteins with Annotated Locations (cropPAL) collates more than 550 data sets from previously published fluorescent tagging or mass spectrometry studies and eight pre-computed subcellular predictions for barley, wheat, rice and maize proteomes. The data collection including metadata for proteins and studies can be accessed through the search portal. The reciprocal blast and EnsemblPLants homology tree allows the search for location data across the four crop species as well as compares it to Arabidopsis data from SUBA.
FAIRsharing.p7ev6e	SigMol	SigMol	SigMol is a specialized repository of quorom sensing signaling molecules (QSSMs) in prokaryotes. SigMol harbors information on QSSMs pertaining to different quorum sensing signaling systems namely acylated homoserine lactones (AHLs), diketopiperazines (DKPs), 4- hydroxy-2-alkylquinolines (HAQs), diffusible signal factors (DSFs), autoinducer-2 (AI-2) and others. The database includes biological as well as chemical aspects of signaling molecules. Biological information includes genes, preliminary bioassays, identification assays and applications, while chemical detail comprises of IUPAC name, SMILES and structure.
FAIRsharing.p7jtzr	US National Institutes of Health Policy on sharing of model organisms for Biomedical Research	IH Policy on sharing of model organisms for Biomedical Research	The NIH is interested in continuing to ensure that the research resources developed with NIH funding are made readily available in a timely fashion to the research community for further research, development, and application, in the expectation that this will further the research enterprise and accelerate the development of products and knowledge of benefit to the public. At the same time, NIH recognizes the rights of grantees and contractors to elect and retain title to subject inventions developed with federal funding pursuant to the Bayh-Dole Act.
FAIRsharing.p7YFEc	National Biodiversity Network Atlas	NBN Atlas	The NBN Atlas is an online tool that provides a platform to engage, educate and inform people about the natural world. It will help improve biodiversity knowledge, open up research possibilities and change the way environmental management is carried out in the UK.
FAIRsharing.p7yp7c	Affymetrix Raw Intensity Format	None	The CEL file stores the results of the intensity calculations on the pixel values of the DAT file. This includes an intensity value, standard deviation of the intensity, the number of pixels used to calculate the intensity value, a flag to indicate an outlier as calculated by the algorithm and a user defined flag indicating the feature should be excluded from future analysis. The file stores the previously stated data for each feature on the probe array.
FAIRsharing.p899f7	Japan Proteome Standard Repository	jPOSTrepo	jPOSTrepo (Japan ProteOme STandard Repository) is a data repository of sharing MS raw/processed data.
FAIRsharing.p90p8q	Banana Genome Hub	BGH	The Banana Genome Hub centralises databases of genetic and genomic data for the Musa acuminata crop, and is the official portal for the Musa genome resources.
FAIRsharing.p9EyGm	Minimum Information for Reusable Arthropod Abundance Data	MIReAD	The Minimum Information for Reusable Arthropod Abundance Data (MIReAD) is a minimum information standard for reporting arthropod abundance data through time. Developed with broad stakeholder collaboration, it balances sufficiency for reuse with the practicality of preparing the data for submission. It is designed to optimize data (re)usability from the “FAIR,” (Findable, Accessible, Interoperable, and Reusable) principles of public data archiving (PDA). This standard aims to facilitate data unification across research initiatives and communities dedicated to surveillance for detection and control of vector-borne diseases and pests.
FAIRsharing.p9SgT0	Integrated Carbon Observation System Data Portal	ICOS Carbon Portal	ICOS Data Portal provides observational data and elaborated products on greenhouse gases. Data sets can be visualised and downloaded fully and/or partially. ICOS data meets the global standards for atmospheric, ecosystem flux and marine observations of greenhouse gases. All information on observations and the metadata is stored in persistent long-term repositories.
FAIRsharing.p9xm4v	ABA Adult Mouse Brain	ABA	ABA Adult Mouse Brain is a standardised collection of the expression patterns of thousands of adult brain genes. This resource can be used for a vast array of research on brain organisation and function. There are lighter versions of this ontology that are customised for the NeuroMorpho.Org brain regions.
FAIRsharing.pa6njw	Student Health Record	SHR	The goal of the SHR project is to develop an ontology for the description of student health records. Student health records are created for entering college students in order to provide better health services will be formed. This file contains various sections such as history of disease, family history of disease and public examinations.
FAIRsharing.paxq07	University of East Anglia Climatic Research Unit Datasets	CRU Datasets	Climatic datasets available for use by the research community
FAIRsharing.paz6mh	BioModels	BioModels	BioModels is a repository of computational models of biological processes. It allows users to search and retrieve mathematical models published in the literature. Many models are manually curated (to ensure reproducibility) and extensively cross-linked to publicly available reference information.
FAIRsharing.PB6595	Wikidata Identifier	QID	Unique identifier (UID) used for items in Wikidata.
FAIRsharing.pcmg8s	Mammalian Protein Localization Database	LOCATE	LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM4 mouse and human protein sequence set.
FAIRsharing.pcs58g	GrainGenes, a Database for Triticeae and Avena	GrainGenes	The GrainGenes website hosts a wealth of information for researchers working on Triticeae species, oat and their wild relatives. The website hosts a database encompassing information such as genetic maps, genes, alleles, genetic markers, phenotypic data, quantitative trait loci studies, experimental protocols and publications. The database can be queried by text searches, browsing, Boolean queries, MySQL commands, or by using pre-made queries created by the curators. GrainGenes is not solely a database, but serves as an informative site for researchers and a means to communicate project aims, outcomes and a forum for discussion.
FAIRsharing.PD1PEt	Blackfynn Discover	None	Blackfynn Discover is a public resource for accessing large public Neuroscience datasets. Blackfynn Discover was developed through grants from the NIH NIDA, NIH CommonFund, DARPA, and others to provide a sustainable solution for fostering collaboration in the Neurosciences.
FAIRsharing.pd7q00	SYSGRO: A resource of fission yeast phenotypic data & analysis	SYSGRO	SYSGRO is a high throughput/high-content microscopy fission yeast phenotype database from the Carazo Salas Lab in the University of Cambridge UK, funded thanks to a EU ERC Starting Grant. It contains cell shape, microtubule & cell cycle progression computational phenotypes for 3004 non-essential gene knockout cell lines. It is the first multi-phenotypic microscopy profiling functional genomics resource for any organism/
FAIRsharing.pDq8lX	Hierarchical Editing Language for Macromolecules	HELM	HELM (Hierarchical Editing Language for Macromolecules) enables the representation of a wide range of biomolecules (e.g. proteins, nucleotides, antibody drug conjugates) whose size and complexity render existing small-molecule and sequence-based informatics methodologies impractical or unusable. HELM solves this problem through a hierarchical notation that represents complex macromolecules as polymeric structures with support for unnatural components (e.g. unnatural amino acids) and chemical modifications.
FAIRsharing.pdx9yt	Aspergillus Genomes	None	Aspergillus Genomes is a resource for viewing annotated genes arising from various Aspergillus sequencing and annotation projects.
FAIRsharing.peabnh	Bleeding History Phenotype	BHO	An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.
FAIRsharing.PeLjos	iGEM Registry of Standard Biological Parts	iGEM	The iGEM Parts Registry is a growing collection of genetic parts that can be mixed and matched to build synthetic biology devices and systems. As part of the synthetic biology community's efforts to make biology easier to engineer, it provides a source of genetic parts to iGEM teams and academic labs. You can learn more about iGEM Teams and Labs at iGEM.org.
FAIRsharing.pep8cs	Ciona intestinalis Protein Database	CIPRO	CIPRO is an integrated protein that has been developed to provide widespread information of the proteins expressed in the ascidian Ciona intestinalis, especially for the researcher who wants to get advance and useful information for starting biological and biomedical research. The protein information in CIPRO directly links to gene expression, a tool for peptide mass fingerprinting (PMF), intracellular localization, 3D image of early development, and transgenic resources.
FAIRsharing.pf13h9	Cell Press - Cell Host & Microbe - Information for Authors	None	Cell Host & Microbe is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Cell Host & Microbe. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.pf2qyq	Ontology for Drug Discovery Investigations	DDI	The goal of DDI project is to develop an ontology for the description of drug discovery investigations. The Pharmaceutical industry is an information based industry. The aim of DDI is to add value to the information generated in the drug pipeline by making the information easier to reuse, integrate, curate, retrieve, and reason with. DDI aims to follow to the Open Biomedical Ontologies Foundry (OBO) principles, to use relations laid down in the OBO Relation Ontology, and to be compliant with the Ontology for biomedical investigations (OBI).
FAIRsharing.pfes4f	Protein Protein Interaction Inhibition Database	2P2Idb	2P2Idb is a hand-curated structural database dedicated to the modulation of protein-protein interactions (PPIs). It includes all interactions for which both the protein-protein and protein-modulator complexes have been structurally characterized by X-ray or NMR. The 2P2I database currently contains 14 protein-protein complexes, 16 free proteins, 56 protein-ligand complexes and 53 small molecule inhibitors. Only inhibitors found at the interface (orthosteric modulators) have been considered in this version of the database. The web server provides links to related sites of interest, binding affinity data, pre-calculated structural information about protein-protein interfaces and 3D interactive views through java applets.
FAIRsharing.pFZBRP	EMODnet Bathymetry	None	EMODnet Bathymetry provides a service for viewing and downloading a harmonised Digital Terrain Model (DTM) for the European sea regions that is generated by the EMODnet Bathymetry partnership on the basis of an increasing number of bathymetric data sets. These are managed as survey data sets and composite DTMs by data providers from government and research. Services for discovery and requesting access to these data sets are provided as well.
FAIRsharing.pg4NHk	Open Metadata Markup Language	odML	odML is a format to collect and share metadata in an organized, human- and machine-readable way. The format specifies a hierarchical structure for storing arbitrary metadata as extended key-value pairs. It is inherently extensible and can be adapted flexibly to the specific requirements of any laboratory. Developed within the Neuroinformatics community, it is a generic format intended for all types of data.
FAIRsharing.ph8fx9	Academic Seismic Portal	ASP	ASP is an archive of academic active-source seismic data, supported by the National Science Foundation.
FAIRsharing.ph9sby	South African National Biodiversity Institute IPT - GBIF South Africa	SANBI IPT - GBIF South Africa	The South African National Biodiversity Institute (SANBI) leads and coordinates research, and monitors and reports on the state of biodiversity in South Africa. The institute provides knowledge and information, gives planning and policy advice and pilots best-practice management models in partnership with stakeholders. SANBI engages in ecosystem restoration and rehabilitation, leads the human capital development strategy of the sector and manages the National Botanical Gardens as 'windows' to South Africa's biodiversity for enjoyment and education.
FAIRsharing.pj0zsn	Wellcome Trust Policy on Data Management and Sharing	None	All Wellcome Trust funded researchers should maximise access to their research data with as few restrictions as possible. It requires applicants whose proposed research will generate data that hold significant value as a resource for the wider research community to submit a data management and sharing plan as part of the application process.
FAIRsharing.pj6a0t	Hepatitis C Virus Ires Variation Database	HCVIVdb	HCVIVdb is a database of published variations observed within the internal ribosome entry site (IRES) of the hepatitis C Virus.
FAIRsharing.pjj4gd	Biological and Chemical Oceanography Data Management Office	BCO-DMO	The Biological and Chemical Oceanography Data Management Office (BCO-DMO) is a publicly accessible earth science data repository created to curate, publicly serve (publish), and archive digital data and information from biological, chemical and biogeochemical research conducted in coastal, marine, great lakes and laboratory environments. The BCO-DMO repository works closely with investigators funded through the NSF OCE Division’s Biological and Chemical Sections and the Division of Polar Programs Arctic Sciences and Antarctic Organisms & Ecosystems. The office provides services that span the full data life cycle, from data management planning support and DOI creation, to archive with appropriate national facilities.
FAIRsharing.pjmdrp	speciesLink	speciesLink	speciesLink (also known as the Distributed Information System for Biological Collections: Integrating Species Analyst and SinBiota (FAPESP)) implements a distributed information system to retrieve primary biodiversity data from collections within the state of São Paulo (Brazil) as well as data integrated from other networks and observation data registered in the SinBiota database.
FAIRsharing.pjqe4x	Graphics Interchange Format	GIF	Graphics Interchange Format (GIF) is a standard for defining generalized color raster images. This format allows high-quality, high-resolution graphics to be displayed on a variety of graphics hardware and is intended as an exchange and display mechanism for graphics images. The format supports up to 8 bits per pixel for each image, allowing a single image to reference its own palette of up to 256 different colors chosen from the 24-bit RGB color space. It also supports animations and allows a separate palette of up to 256 colors for each frame. These palette limitations make the GIF format less suitable for reproducing color photographs and other images with continuous color, but it is well-suited for simpler images such as graphics or logos with solid areas of color.
FAIRsharing.pk6cwg	Epoch Clinical Trial Ontology	None	The Epoch Clinical Trial Ontology is a standard, originally curated from data in BioPortal. It encodes knowledge about the clinical trial domain that is relevant to trial management applications. It has been created to support semantic interoperation of clinical trial software applications. Epoch is a suite of clinical trial ontologies that formally represents protocol entities relevant to the clinical trials management applications they support. However, information on this standard appears to no longer be available. If you work on this standard, or know of it's current status, please get in touch with our team.
FAIRsharing.pkm8j3	Merritt	Merritt	Merritt is a curation repository for the preservation of and access to the digital research data of the ten campus University of California system and external project collaborators. Merritt provides persistent identifiers, storage replication, fixity audit, complete version history, REST API, a comprehensive metadata catalog for discovery, ATOM-based syndication, and curatorially-defined collections, access control rules, and data use agreements (DUAs). Merritt content upload and download may each be curatorially-designated as public or restricted. Merritt DOIs are provided by UC3's EZID service, which is integrated with DataCite. All DOIs and associated metadata are automatically registered with DataCite and are harvested by Ex Libris PRIMO and Thomson Reuters Data Citation Index (DCI) for high-level discovery. Merritt is also a member node in the DataONE network; curatorially-designated data submitted to Merritt are automatically registered with DataONE for additional replication and federated discovery through the ONEMercury search/browse interface.
FAIRsharing.pkt5s4	Smoking Behavior Risk Ontology	SBRO	"Smoking Behavior Risk Ontology" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1249. This text was generated automatically. If you work on the project responsible for "Smoking Behavior Risk Ontology" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.pkw5bj	Genome Variation Format	GVF	The Genome Variation Format (GVF) is a very simple file format for describing sequence alteration features at nucleotide resolution relative to a reference genome.
FAIRsharing.PkY7Hl	Cucurbit Genomics Database	CuGenDB	The recent genome sequence assemblies of major cucurbit crop species, including cucumber, melon, watermelon and pumpkin have made it feasible to use advanced genomic approaches in cucurbit breeding. Under the CucCAP project (http://cuccap.org), the Cucurbit Genomics Database (CuGenDB) aims to accelerate the breeding progress of cucurbit crops. Tripal was used to help manage, store, distribute and analyze the large amount of recently generated genotype and phenotype data. CuGenDB integrates genetic, genomics, transcriptomics and other biological data.
FAIRsharing.ple9HR	Cochrane Core Vocabulary Ontology	None	The Cochrane Core Vocabulary ontology describes the entities and concepts that exist in the domain of evidence-based healthcare. It is used for the construction of the Cochrane Linked Data Vocabulary containing some 400k terms including Interventions (Drugs, Procedures etc), Populations (Age, Sex, Condition), and Clinical outcomes. *Please note our web pages are currently under review*
FAIRsharing.pmdtmg	ADPriboDB	ADPriboDB	ADPriboDB is a database of ADP-ribosylated proteins and their literature-identified ADP-ribosylated residues. The database includes a variety of information for each entry, including any drug treatments performed to obtain the identification of the modification, cell lines and species, the ADP-ribosyltransferases responsible for synthesizing the modification (if known), as well as the site of modification (if identified).
FAIRsharing.pmv2gA	The Polygenic Score Catalog	PGS Catalog	The Polygenic Score Catalog is an open database of published polygenic scores (PGS; also referred to as polygenic risk scores [PRS] or genetic/genomic risk scores [GRS]).  Each PGS in the Catalog is consistently annotated with relevant metadata; including scoring files (variants, effect alleles/weights), annotations of how the PGS was developed and applied, and evaluations of their predictive performance.
FAIRsharing.pmvppd	Breast tissue cell lines	MCBCC	List of cell lines derived from breast tissue, both normal and pathological. The ontology in built in OWL with cross relation to classes- genetic variation, pathological condition, genes, chemicals and drugs.
FAIRsharing.pmygc7	CEDAR Value Sets	CEDARVS	The initial set of value sets used by CEDAR.
FAIRsharing.pmz447	Mycoplasma pulmonis genome database	MypuList	Its purpose is to collate and integrate various aspects of the genomic information from M. pulmonis, a mollicute causal agent of murine respiratory mycoplasmosis. MypuList provides a complete dataset of DNA and protein sequences derived from the strain M. pulmonis UAB CTIP, linked to the relevant annotations and functional assignments.
FAIRsharing.pn1sen	Enzyme Reaction Ontology for annotating Partial Information of chemical transformation	PIERO	Enzyme Reaction Ontology for annotating Partial Information of chemical transformation
FAIRsharing.pn372d	FlyGlycoDB	FlyGlycoDB	The glycobiology of Drosophila has been extensively studied in recent years, and much information has accumulated regarding glycan-related genes and proteins in Drosophila. As a database for glycan-related genes in Drosophila, FlyGlycoDB provides specific access to this information.
FAIRsharing.pn7yxf	Swedish National Data Service	SND	Swedish National Data Service (SND) is a research data infrastructure that supports accessibility, preservation, and reuse of research data. The SND Search function makes it easy to find, use, and cite research data from a variety of scientific disciplines. SND is present throughout the Swedish research ecology, through an extensive network across closer to 40 higher education institutions and other research organisations. Together, SND and this network form a distributed system of certified research data repositories with the SND main office as a central node. The certification means that SND ensures that research data are managed, stored, and made accessible in a secure and sustainable manner, today and for the future. SND collaborates with various international stakeholders in order to advance global access to research data.
FAIRsharing.pp1Jtx	EMODnet Biology	EMODnet Biology	The EMODnet biology data portal provides free access to data on temporal and spatial distribution of marine species and species traits from all European regional seas. EMODnet Biology is part of the EU funded European Marine Observation and Data Network.
FAIRsharing.pP4ALT	data.world	data.world	data.world is a repository for open-access data sets. Their goal is to build the most meaningful, collaborative, and abundant data resource in the world.
FAIRsharing.pp67qc	Interferome	Interferome	This database enables the reliable identification of an individual Interferon Regulated Gene (IRG) or IRG signatures from high-throughput data sets (i.e. microarray, proteomic data etc.). It also assists in identifying regulatory elements, chromosomal location and tissue expression of IRGs in human and mouse. This upgraded version, Interferome v2.0 has quantitative data, more detailed annotation and search capabilities and can be queried for one to a thousand genes, such as from from a microarray experiment.
FAIRsharing.ppdbrz	C. elegans Natural Diversity Resource	CeNDR	Whole-genome sequence data, variant calls, and annotations of natural genetic variation in C. elegans species.
FAIRsharing.pPOQZf	MarinE MethanE and NiTrous Oxide	MEMENTO	MEMENTO aims to identify regions of the world ocean that should be targeted in future work to improve the quality of air-sea flux estimates. MEMENTO is a joint initiative between SOLAS (Surface Ocean Lower Atmosphere Study) and COST Action 735 (European CoOperation in the Field of Scientific and Technical Research).
FAIRsharing.pq1njd	GBIF France IPT - GBIF France	None	GBIF France aims to collect all primary biodiversity data hosted in France, regardless of whether they concern the biodiversity of French territory or the rest of the world. GBIF France also supports additional countries' nodes with the hosting of their IPTs.
FAIRsharing.pqnhpj	Medical Information Mart for Intensive Care III	MIMIC-III	MIMIC-III (Medical Information Mart for Intensive Care III) is a large, freely-available database comprising deidentified health-related data associated with over forty thousand patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012. The database includes information such as demographics, vital sign measurements made at the bedside (~1 data point per hour), laboratory test results, procedures, medications, caregiver notes, imaging reports, and mortality (both in and out of hospital). MIMIC supports a diverse range of analytic studies spanning epidemiology, clinical decision-rule improvement, and electronic tool development. I
FAIRsharing.pr47jw	NIDDK Central Repository	NIDDK	The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK-funded clinical studies. The purpose of the NIDDK Central Repository is to expand the usefulness of these studies by allowing a wider research community to access data and materials beyond the end of the study.
FAIRsharing.prdtva	GigaScience - Minimum Standards of Reporting Checklist	None	This is the main checklist/guideline for data deposition and formatting for papers submitted to GigaScience and GigaByte journals published by GigaScience Press.
FAIRsharing.pS2p8c	UNC Dataverse	UNC Dataverse	UNC Dataverse is a research data repository hosted by the Odum Institute at the University of North Carolina at Chapel Hill. UNC Dataverse is an open access repository that accepts data deposits from individual researchers, research groups, institutions, journals, and other entities from all disciplinary domains.  UNC Dataverse offers value-added features that support archiving, discovery, and sharing of research data that align with FAIR principles for findable, accessible, interoperable, reusable data.
FAIRsharing.ps501f	BioPortal Metadata	None	This ontology represents the structure that BioPortal uses to represent all of its metadata (ontology details, mappings, notes, reviews, views).
FAIRsharing.PsyMBm	HymenopteraMine	HymenopteraMine	HymenopteraMine integrates genomic data for bees, ants and the parasitoid jewel wasp. Expression and variation data are provided for A. mellifera.
FAIRsharing.pt7qd6	Banana21	Banana21	The vast majority of the bananas currently grown and consumed were not conventionally bred but are selections made over probably thousands of years from naturally occurring hybrids. Cultivated bananas are very nearly sterile and as a consequence are not propagated from seed but rather through vegetative propagation, primarily suckers as well as more recently micropropagated or tissue cultured bananas. These factors, very old selections, near sterility and vegetative propagation, mean that these bananas have not been genetically improved either for resistance or improved quality and are becoming increasing in affected by serious pests and diseases.
FAIRsharing.ptp5tb	GBIF Benin IPT - GBIF France	None	GBIF France hosts this data repository on behalf of GBIF Benin in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT).
FAIRsharing.ptsckv	Cancer Genome Mine	CanGEM	Clinical information about tumor samples and microarray data, with emphasis on array comparative genomic hybridization (aCGH) and data mining of gene copy number changes.
FAIRsharing.Pupa1p	PeanutMine	PeanutMine	PeanutMine integrates peanut data from LIS PeanutBase and other sources.
FAIRsharing.pvdrmz	Minimum Information About a Microarray Experiment involving Plants	MIAME/Plant	MIAME/Plant is a standard describing which biological details should be captured for describing microarray experiments involving plants. Detailed information is required about biological aspects such as growth conditions, harvesting time or harvested organ(s).
FAIRsharing.pvfyj4	LINCS Extended Metadata Standard: Other Reagents	LINCS 2: Other Reagents	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project. This category serves to describe generic reagents that fall outside of any of the previously listed specific categories. An example is lipopolysaccharide, a component of the outer membrane of gram-negative bacteria that triggers an immune response similar to that initiated by a bacterial infection. Information that is relevant to be reported about these reagents includes a standardized name and ID, provider information, purity, and source.
FAIRsharing.pw2hnb	Microbiological Common Language	MCL	MCL is a data exchange standard for microbiological information. In short, MCL defines terms which can be used to reference and describe microorganisms. It is designed to form a simple and generic framework leveraging the electronical exchange of information about microorganisms. MCL is loosely coupled from its actual representation technologies and is currently used to structure XML and RDF files.
FAIRsharing.pwgf4p	Japanese Genotype-phenotype Archive	JGA	The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted.
FAIRsharing.pwk71v	Citation Style Language JSON Schema	CSL-JSON Schema	The Citation Style Language JSON (CSL-JSON) schema renders citations and bibliography metadata for CSL processors. Where the related CSL XML schema provides structured style and locale files, CSL-JSON provides the structured bibliographic metadata. The CSL-JSON schema is not yet fully normative, and care must be taken to ensure compatibility with other tools built around CSL-JSON. CSL-JSON contains two main structures: csl-data.json describes how the metadata of bibliographic items can be stored; and csl-citation.json incorporates csl-data.json and adds an additional layer of information to also describe the context in which bibliographic items are cited, including information such as the order in which items are cited and which items are cited together in a single citation.
FAIRsharing.pwvtn5	NeuroML	NeuroML	NeuroML is a model description language developed in XML (extensible Markup Language) that was created to facilitate data archiving, data and model exchange, database creation, and model publication in the neurosciences. One of the goals of the NeuroML project is to develop standards for model specification that will allow for greater simulator interoperability and model exchange.
FAIRsharing.pxj1sx	Ontological Knowledge Base Model for Cystic Fibrosis	ONTOKBCF	OntoKBCF is an ontological knowledge base model for cystic fibrosis. There are molecular genetic information (i.e. gene mutations) and health information included in OntoKBCF. The purposes of OntoKBCF include management of molecular genetic information and health information and embedding OntoKBCF into EHR settings.
FAIRsharing.pxm2h8	MutDB	MutDB	The goal of MutDB is to annotate human variation data with protein structural information and other functionally relevant information, if available. The mutations are organized by gene. Click on the alphabet below to go alphabetically through the list of genes. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
FAIRsharing.pxnqyt	RepeatsDB	RepeatsDB	RepeatsDB (http://repeatsdb.bio.unipd.it/) is a database of annotated tandem repeat protein structures. Tandem repeats pose a difficult problem for the analysis of protein structures, as the underlying sequence can be highly degenerate. Several repeat types haven been studied over the years, but their annotation was done in a case-by-case basis, thus making large-scale analysis difficult. We developed RepeatsDB to fill this gap. Using state-of-the-art repeat detection methods and manual curation, we systematically annotated the Protein Data Bank, predicting 10 745 repeat structures. In all, 2797 structures were classified according to a recently proposed classification schema, which was expanded to accommodate new findings. In addition, detailed annotations were performed in a subset of 321 proteins. These annotations feature information on start and end positions for the repeat regions and units. RepeatsDB is an ongoing effort to systematically classify and annotate structural protein repeats in a consistent way. It provides users with the possibility to access and download high-quality datasets either interactively or programmatically through web services.
FAIRsharing.pxvkt0	Variation data representation and exchange	VarioML	Data using the VarioML standard can be integrated with the global library of purely genetic data. VarioML is a central prerequisite for effective modelling of phenotype data and genotype-to-phenotype relationships. It removes the obstacles to the effective passing of variant data from discovery laboratories into the biomedical database world. Now all that is needed is the broad participation of the genotype-to-phenotype research community.
FAIRsharing.pyhdJS	BioTopLite 2	BTL2	BioTopLite 2 (BTL2) is a simplified, high-level version of BioTop, a top-domain ontology that provides definitions for the foundational entities of biomedicine. BioTop imports BTL2 as its upper-level ontology.
FAIRsharing.pypsym	The European Searchable Tumour Line Database	IPD-ESTDAB	The European Searchable Tumour Line Database (ESTDAB) Database and Cell Bank provide a service enabling investigators to search online for HLA typed, immunologically characterised tumour cells.
FAIRsharing.pzxjh	Cerrado concepts and plant community dynamics	CCON	The ontology of Cerrado wood plant dynamics was created in order to represent the set of concepts about the dynamics, that is, changes over time of the wood vegetation structure, of Cerrado. Ccon describes the main parameters used to measure the changes, such as mortality rate and recruitment rate.
FAIRsharing.q04phv	NIH Human Microbiome Project	HMP	The NIH Common Fund Human Microbiome Project (HMP) was established in 2008, with the mission of generating resources that would enable the comprehensive characterization of the human microbiome and analysis of its role in human health and disease. The HMP has characterized the microbial communities found at several different sites on the human body: nasal passages, oral cavity, skin, gastrointestinal tract, and urogenital tract.
FAIRsharing.q0hgq	Monument Inventory DAta Standard Heritage	MIDAS Heritage	The UK Historic Environment Data Standard is a British cultural heritage standard for recording information on buildings, archaeological sites, shipwrecks, parks and gardens, battlefields, areas of interest and artefacts. This data standard suggests the minimum level of information needed for recording heritage assets and covers the procedures involved in understanding, protecting and managing these assets. It also provides guidelines on how to support effective sharing of knowledge, data retrieval and long-term preservation of data.
FAIRsharing.Q0Ytmr	University of Arizona Research Data Repository	ReDATA	ReDATA is the University of Arizona's data repository. All datasets are publicly available however new submissions are open to university affiliates only.
FAIRsharing.q15f96	CDISC Laboratory Data Model	CDISC LAB	LAB provides a standard model for the acquisition and exchange of laboratory data, primarily between labs and sponsors or CROs. The LAB standard was specifically designed for the interchange of lab data acquired in clinical trials.
FAIRsharing.q2n5wk	SureChEMBL	SureChEMBL	SureChEMBL is a publicly available large-scale resource containing compounds extracted from the full text, images and attachments of patent documents. The data are extracted from the patent literature according to an automated text and image-mining pipeline on a daily basis. SureChEMBL provides access to a previously unavailable, open and timely set of annotated compound-patent associations, complemented with sophisticated combined structure and keyword-based search capabilities against the compound repository and patent document corpus. Currently, the database contains 17 million compounds extracted from 14 million patent documents.
FAIRsharing.q2ntvx	KinMutBase	KinMutBase	KinMutBase is a comprehensive database of disease-causing mutations in protein kinase domains. This resources provides plenty of information, namely mutation statistics and display, clickable sequences with mutations and changes to restriction enzyme patterns.
FAIRsharing.q31z3g	Research Data Archive at NCAR	NCAR CISL RDA	The Research Data Archive (RDA) at NCAR contains a large and diverse collection of meteorological and oceanographic observations, operational and reanalysis model outputs, and remote sensing datasets to support atmospheric and geosciences research.
FAIRsharing.q33qzy	HGTree	HGTree	The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,472 completely sequenced prokaryotic genomes. HGT detection is based on an explicit evolutionary model of tree reconstruction and relies on evaluating the conflicts between phylogenetic tree of each orthologous gene set and corresponding 16S rRNA species tree. The database provides quick and easy access to HGT-related genes in hundreds of prokaryotic genomes and provides functionalities to detect HGT in user-customized datasets and gene and genome sequences. The database is freely available and can be easily scaled and updated to keep pace with the rapid rise in genomic information.
FAIRsharing.q3xrwn	Cell Press - Molecular Cell - Information for Authors	None	Molecular Cell is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Molecular Cell. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.q47I0t	CryoEM Ontology	CryoEM Ontology	The CryoEM Ontology for describing objects and workflows in Single Particle Analysis by Cryo Electron Microscopy.
FAIRsharing.q4ahrn	Springer Nature - Research Data Policies	None	Information on the Research Data policies of the Springer Nature group.
FAIRsharing.q5tfhf	BioActivity Ontology	BIOA	There is currently no information avauilable on the BioActivity Ontology. Please contact us if you know more about this ontology.
FAIRsharing.q5xf99	COPD Ontology	COPDO	The COPD Ontology is a biomedical ontology used for modelling concepts associated to chronic obstructive pulmonary disease in routine clinical databases. There are a no plans to revise this ontology in the near future and therefore the version shown in the BioPortal link should be considered the final version.
FAIRsharing.q70amd	DyNet	DyNet	DyNet is a Cytoscape application that provides a range of functionalities for the visualization, realtime synchronization, and analysis of large multi-state dynamic molecular interaction networks enabling users to quickly identify and analyze the most 'rewired' nodes across many network states.
FAIRsharing.q72e3w	Short Read Archive eXtensible Markup Language	SRA-XML	The SRA data model contains the following objects: Study: information about the sequencing project Sample: information about the sequenced samples Experiment: information about the libraries, platform; associated with study, sample(s) and run(s) Run: contains the raw data files Analysis: contains the analysis data files; associated with study, sample and run objects Submission: information about the submission actions include release date. It is used by The Sequence Read Archive (SRA) and the European Nucleotide Archive (ENA) to store raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System, Illumina Genome Analyzer, Applied Biosystems SOLiD System, Helicos Heliscope, Complete Genomics, and Pacific Biosciences SMRT. Please note that the SRA-XML webpage states that "This page has been deprecated and may be removed without further notice."
FAIRsharing.q7bkqr	STING	STING	The Blue Star STING database stores information on the interactions between proteins and other bio macromolecules. Structure descriptors used in the analysis of these interactions are stored in STING DB to aid research primarily into the problems challenging Brazilian agriculture, livestock and medicine.
FAIRsharing.Q7gFA9	MitImpact	MitImpact	MitImpact is a collection of genomic, clinical, and functional annotations for all nucleotide changes that cause non-synonymous substitutions in human mitochondrial protein-coding genes
FAIRsharing.q7kr4s	Observations and Measurements - XML Implementation	OMXML	This standard specifies an XML implementation for the OGC and ISO Observations and Measurements (O&M) conceptual model (OGC Observations and Measurements v2.0 also published as ISO/DIS 19156), including a schema for Sampling Features. This encoding is an essential dependency for the OGC Sensor Observation Service (SOS) Interface Standard. More specifically, this standard defines XML schemas for observations, and for features involved in sampling when making observations. These provide document models for the exchange of information describing observation acts and their results, both within and between different scientific and technical communities.
FAIRsharing.q81k8w	Strengthening the Reporting of Observational Studies in Epidemiology—Nutritional Epidemiology	STROBE-nut	STROBE-nut is a guideline for reporting nutrition epidemiology and dietary assessment research by extending the STROBE statement into the STROBE Extension for Nutritional Epidemiology (STROBE-nut).
FAIRsharing.Q86Asf	Regulatory Element Database for Drosophila	REDfly	REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly regulatory elements along with their DNA sequence, their associated genes, and the expression patterns they direct.
FAIRsharing.q8fx1b	Ontobee	Ontobee	A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.
FAIRsharing.q9neh8	MGI Mouse Gene Expression Database	GXD	The Gene Expression Database (GXD) is a community resource for gene expression information from the laboratory mouse. GXD stores and integrates different types of expression data and makes these data freely available in formats appropriate for comprehensive analysis. There is particular emphasis on endogenous gene expression during mouse development.
FAIRsharing.q9nh66	ENA Sequence Flat File Format	None	ENA Sequence Flat File Format is a standardised plain text format for nucleotide sequences. This format was previously called the EMBL Sequence Flat File Format.
FAIRsharing.q9VUYM	BBMRI-ERIC Directory	None	The BBMRI-ERIC Directory is a tool to share aggregate information about biobanks across Europe. The Directory welcomes new biobanks to join and publish information about themselves, including their contact information in the directory. The BBMRI-ERIC Directory can help researchers find relevant biobanks, get their contact information and identify appropriate infrastructure for the storage of samples for research purposes.
FAIRsharing.qaaj0q	Gene Feature File version 1	GFF	The GFF file format stands for "Gene Finding Format" and was invented at the Sanger Centre. GFF is a supported format in GMOD, but it is now deprecated and if you have a choice you should use GFF3.
FAIRsharing.qaee9n	ChemDraw Native File Format	CDX	CDX is the native file format of ChemDraw, and is guaranteed to save anything drawn in ChemDraw without loss of data. At the same time, however, its architecture was carefully designed to make it a flexible and general-purpose chemical format. It is intended to be a practical choice for use by non-graphical programs, i.e. ones dealing in connection tables rather than desktop publishing. Because of its ability to incorporate custom information, and because it is in the public domain, CDX has been adopted by the U.S. Patent Office as its standard chemical format. Originally developed by the CambridgeSoft Corporation, it is now a subsidiary of PerkinElmer Inc.
FAIRsharing.qaszjp	RESID Database of Protein Modifications	RESID	The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.
FAIRsharing.qbs404	Material Transfer Agreement for 1958BC samples	None	The National Child Development Study (NCDS) is a continuing longitudinal study that seeks to follow the lives of all those living in Great Britain who were born in one particular week in 1958. Conducted by the Centre for Longitudinal Studies (CLS), the aim of the study is to improve understanding of the factors affecting human development over the whole lifespan. It collects information on physical and educational development, economic circumstances, employment, family life, health behaviour, wellbeing, social participation and attitudes. This policy document is an example Material Transfer agreement (MTA). It is equitable that those approved to receive samples should know the terms of an MTA before completing the application process.
FAIRsharing.qbt1gh	SNPeffect	SNPeffect	SNPeffect is a database for phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect primarily focuses on the molecular characterization and annotation of disease and polymorphism variants in the human proteome. Further, SNPeffect holds per-variant annotations on functional sites, structural features and post-translational modification.
FAIRsharing.qbwrtn	Networks of Functional Coupling of proteins	FunCoup	FunCoup is a framework to infer genome-wide functional couplings in 11 model organisms. Functional coupling, or functional association, is an unspecific form of association that encompasses direct physical interaction but also more general types of direct or indirect interaction like regulatory interaction or participation the same process or pathway.
FAIRsharing.qcziIV	FAIR Metrics -  Detailed Provenance	FM-R1.2	FM-R1.2 is a metric concerned with whether there is provenance information associated with the data, covering at least two primary types of provenance information: Who/what/When produced the data (i.e. for citation); and Why/How was the data produced (i.e. to understand context and relevance of the data). Several IRIs must be provided to fulfil this metric. At least one of these points to one of the vocabularies used to describe citational provenance (e.g. dublin core). Additionally, at least one points to one of the vocabularies (likely domain-specific) that is used to describe contextual provenance (e.g. EDAM). This metric applies to part R1.2 of the FAIR Principles.
FAIRsharing.qdcgfc	Ontology of Pneumology	OntoPneumo	OntoPneumo is an ontology for describing pneumology (french version). Their goal is to use natural language within the ontology to express the meaning of each concept using differential principles inherited from Differential Semantics theory. OntoPneumo is used in software for pneumologists that represents medical knowledge to describe the medical diagnoses in the form of graphs and to propose the proper French DRG (Diagnosis Related Group) code.
FAIRsharing.qdjc1z	Pharmacovigilance Ontology	PVONTO	The pharmacovigilance ontology connects known facts on drugs, disease, ADEs, and their molecular mechanisms.
FAIRsharing.qeb7hb	Pharmacogenomic Relationships Ontology	PHARE	The PHArmacogenomic RElationships Ontology (or PHARE) proposes concepts and roles to represent relationships of pharmacogenomics interest.
FAIRsharing.qf46ys	The Human OligoGenome Resource: A Database for Customized Targeted Resequencing Covering the Human Genome	None	Oligonucleotides for targeted resequencing of the human genome
FAIRsharing.qgMKai	DNA Modification Database	DNAmod	DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.
FAIRsharing.qhn29e	Core Attributes of Biological Databases	BioDBCore	BioDBCore is a community-defined, uniform, generic description of the core attributes of biological databases. The BioDBCore checklist is overseen by the International Society for Biocuration (ISB), in collaboration with FAIRsharing.
FAIRsharing.qk984b	OMOP Common Data Model	CDM	The purpose of the Common Data Model (CDM) is to standardize the format and content of the observational data, so standardized applications, tools and methods can be applied to them.
FAIRsharing.qkrmth	RhesusBase	RhesusBase	A comprehensive online knowledgebase for the monkey research community.
FAIRsharing.qky19z	Mammography Image Analysis Society Database	None	Record does not exist anymore: Mammography Image Analysis Society Database. The record with identifier content https://doi.org/10.25504/FAIRsharing.qky19z was invalid.
FAIRsharing.Ql6K87	ModelSEED Biochemistry Database	None	For over 10 years, ModelSEED has been a primary resource for the construction of draft genome-scale metabolic models based on annotated microbial or plant genomes. The ModelSEED biochemistry database is the foundation of the biochemical data underlying ModelSEED and KBase. The The ModelSEED biochemistry database (i) includes compartmentalization, transport reactions, charged molecules and proton balancing on reactions; (ii) is extensible by the user community, with all data stored in GitHub; and (iii) designed as a biochemical ‘Rosetta Stone’ to facilitate comparison and integration of annotations from many different tools and databases. The database was constructed by combining chemical data from many resources, applying standard transformations, identifying redundancies and computing thermodynamic properties. The ModelSEED biochemistry is continually tested using flux balance analysis to ensure the biochemical network is modeling-ready and capable of simulating diverse phenotypes.
FAIRsharing.QlUiql	Experimental Results	None	The Information for Authors page contains a range of guidelines for publishing in Experimental Results. Experimental Results supports the idea that research articles should contain sufficient information to allow others to understand, verify and replicate the findings. We ask authors to provide a Data Availability Statement in the manuscript, describing how readers can access the resources necessary to replicate the findings if they are publicly accessible. If these resources are under embargo, or cannot be publicly released for legal, ethical, commercial or other reasons, the Data Availability Statement should make this clear with a brief explanation
FAIRsharing.QMGzTm	CRISPRCasdb	CRISPRCasdb	CRISPRCasdb acts as a gateway to a publicly accessible database and software to enable the easy detection of CRISPR sequences in locally-produced data and the consultation of CRISPR sequence data present in the database. It also gives information on the presence of CRISPR-associated (cas) genes when they have been annotated as such.
FAIRsharing.QMwdW8	ChickpeaMine	ChickpeaMine	ChickpeaMine integrates data for chickpea varieties desi and kabuli. It is developed by LIS/NCGR, built from the LIS chado database and the Chickpea Transcriptome Atlas - I.
FAIRsharing.qmygaa	GeneProf	GeneProf	GeneProf Data is an open web resource for analysed functional genomics experiments. We have built up a large collection of completely processed RNA-seq and ChIP-seq studies by carefully and transparently reanalysing and annotating high-profile public data sets. GeneProf makes these data instantly accessible in an easily interpretable, searchable and reusable manner and thus opens up the path to the advantages and insights gained from genome-scale experiments to a broader scientific audience. Moreover, GeneProf supports programmatic access to these data via web services to further facilitate the reuse of experimental data across tools and laboratories.
FAIRsharing.QP9j57	Domain Interaction Graph Guided ExploreR	DIGGER	DIGGER is an essential resource for studying the mechanistic consequences of alternative splicing such as isoform-specific interaction and consequence of exon skipping. The database integrates information of domain-domain and protein-protein interactions with residue-level interaction evidence from co-resolved structures. DIGGER allows users to seamlessly switch between isoform and exon-centric views of the interactome and to extract sub-networks of relevant isoforms (isoforms specific PPIs).
FAIRsharing.qpx094	American Medical Association - JAMA -Journal of the American Medical Association - Instructions for Authors	AMA - JAMA Policy	The Instructions for Authors page contains a broad range of guidelines for publishing in JAMA. With regards to data deposition, before submission of a research manuscript reporting on large genomic data sets (eg, protein or DNA sequences), the data sets should be deposited in a publicly available database, such as NCBI's GenBank, and a complete accession number (and version number if appropriate) must be provided.
FAIRsharing.qpyp5g	Gating-ML	Gating-ML	The Gating-ML specification represents a proposal on how to form unambiguous XML-based gate definitions that may be used independently as well as included as one of the components of ACS. The specification supports rectangular gates in n dimensions (i.e., from one-dimensional range gates up to n-dimensional hyper-rectangular regions), polygon gates in two (and more) dimensions, ellipsoid gates in n dimensions, decision tree structures, and Boolean collections of any of the types of gates. Gates can be uniquely identified and may be ordered into a hierarchical structure to describe a gating strategy. Gates may be applied on parameters as in list mode data files (e.g., FCS files) or on transformed parameters as described by any explicit parameter transformation.
FAIRsharing.qq9jf4	Cell Line Integrated Molecular Authentication Database	CLIMA 2	CLIMA 2 is the result of an integration effort aimed at including all certified STR profiles of human cell lines in a unique database. The contents of the database are dynamically summarized (i.e., they are always up-to-date) in a table in the home page. CLIMA can be used to identify researcher's cell lines. Moreover, it can be searched either by name or by locus. The identification of a cell line is performed according to the standard ANSI/ATCC ASN-0002-2011 on "Authentication of Human Cell Lines: Standardization of STR Profiling".
FAIRsharing.qqc7zw	DNASU Plasmid Repository	None	DNASU is a central repository for plasmid clones and collections. Currently we store and distribute over 197,000 plasmids including 75,000 human and mouse plasmids, full genome collections, the protein expression plasmids from the Protein Structure Initiative as the PSI: Biology Material Repository (PSI : Biology-MR), and both small and large collections from individual researchers. We are also a founding member and distributor of the ORFeome Collaboration plasmid collection.
FAIRsharing.qqFfXF	BioInformatics Platform for Agroecosystem Arthropods	BIPAA	BIPAA is a central platform to assist genomics and post-genomics programs developed on insects associated to agroecosystem, for the Plant Health and Environment Division of INRA. We provide online access to genomic data for multiple arthropod species. We also aim to settle an environment allowing a large community to elaborate complex genomics analyses, browsing, mixing or crossing heterogeneous data. BIPAA created and manages information systems dedicated to genomic data: AphidBase (dedicated to aphids), LepidoDB (dedicated to lepidopteran) and ParWaspDB (dedicated to parasitoid wasps).
FAIRsharing.qqy0dr	Ontology of Chinese Medicine for Rheumatism	OCMR	OCMR is a biomedical ontology that represents anti-rheumatism traditional Chinese medicines and related information.
FAIRsharing.QrPuK3	International Ocean Discovery Program Publications Registry	IODP Publications	IODP Publications stores the scientific report and publication series that summarizes the scientific and technical accomplishments of each IODP expedition. These publications are linked to IODP data repositories.
FAIRsharing.qrpwmw	Basic Vertebrate Anatomy	None	There is no information currently available for Basic Vertebrate Anatomy ontology.
FAIRsharing.qrr33y	Flow Cytometry Data File Standard	FCS	The flow cytometry data file standard provides the specifications needed to completely describe flow cytometry data sets within the confines of the file containing the experimental data.
FAIRsharing.qrv60a	Saccharomyces cerevisiae Transcription Factor Database	ScerTF	ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.
FAIRsharing.qrw6b7	Rice Genome Annotation Project	None	This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes. These data are available through search pages and the Genome Browser that provides an integrated display of annotation data.
FAIRsharing.qs4x5m	Microarray and Gene Expression Data Ontology	MO	The MGED Ontology is a top level container for the MGEDCoreOntology and the MGEDExtendedOntology. The MGED ontology describes microarray experiments and is split into the MGEDCoreOntology, which supports MAGE-OM v1.0 and is organized consistently with MAGE, and the MGEDExtendedOntology, which expands MAGE v1.0 and contains concepts and relationships which are not included in MAGE. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/MO. If you work on the project responsible for "MGED Ontology" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.qSULus	Resource Metadata for the Virtual Observatory	IVOA RM	An essential capability of the Virtual Observatory is a means for describing what data and computational facilities are available where, and once identified, how to use them. The data themselves have associated metadata (e.g., FITS keywords), and similarly we require metadata about data collections and data services so that VO users can easily find information of interest. Furthermore, such metadata are needed in order to manage distributed queries efficiently; if a user is interested in finding x-ray images there is no point in querying the HST archive, for example. The Resource Metadata for the Virtual Observatory standard describes an architecture for resource and service metadata and the relationship of this architecture to emerging Web Services standards. We also define an initial set of metadata concepts.
FAIRsharing.qt5ky7	NCBI Viral Genomes Resource	None	NCBI Viral Genomes Resource is a collection of virus genomic sequences that provides curated sequence data, related information and tools. It includes all complete viral genome sequences deposited in the International Nucleotide Sequence Database Collaboration (INSDC) databases, i.e. DDBJ, EMBL, and GenBank. Data are organized by viral taxonomy, and reference sequence records (RefSeqs) from one or more genome sequences for each viral species. After a RefSeq has been created for a species, other complete genomes from that same species are indexed as neighbors to the RefSeq.
FAIRsharing.qtb9yb	Minimal Anatomical Terminology	MAT	Minimal set of terms for anatomy.
FAIRsharing.qtm44s	UK Data Archive	UKDA	The UK Data Archive is an internationally acknowledged centre of expertise in acquiring, curating and providing access to social science and humanities data. We were founded in 1967, at the University of Essex, with the support of the then Social Science Research Council, with the aim of curating high-quality research data for analysis and reuse. The Economic and Social Research Council (ESRC) has continued to provide long-term commitment to the Data Archive and we are now a significant part of their UK data infrastructure. Since 2005 we have been designated a Place of Deposit by the National Archives, allowing us to curate public records. The UK Data Archive is the lead organisation of the UK Data Service, which provides unified access to the UK's largest collection of social, economic and population data. Funded by the ESRC, the UK Data Service provides access to regional, national and international social and economic data, support for policy-relevant research and guidance and training for the development of skills in data use.
FAIRsharing.qtwya6	Material Element component of the SWEET ontology		Material Element component of SWEET ontology. SWEET is a highly modular ontology suite with many separate ontologies covering Earth system science. SWEET is a mid-level ontology and consists of nine top-level concepts that can be used as a foundation for domain-specific ontologies that extend these top-level SWEET components. We are working with the SWEET developers to determine if individual records for SWEET components are required.
FAIRsharing.qUroF6	FAIR Maturity Indicator Gen2-MI-I1A	None	The FAIR Maturity Indicator Gen2-MI-I1A measures the use of a formal, accessible, shared, and broadly applicable language for knowledge representation. The unambiguous communication of knowledge and meaning (what symbols are, and how they relate to one another) necessitates the use of languages that are capable of representing these concepts in a machine-readable manner. There is debate in the community about what languages would be considered "knowledge representation languages", as such this Maturity Indicator is broken into two sub-MIs (Gen2-FM-I1A and Gen2-FM-I1B). This MI takes a loose definition, that any kind of structured information is sufficient.
FAIRsharing.qv0f6x	Manually Curated Database of Rice Proteins	MCDRP	The Manually Curated Database of Rice Proteins (MCDRP) is a manually-curated database based on published experimental data. The database contains data for rice proteins curated from experiments drawn from research articles. The database stores information including gene name, plant type, tissue and developmental stage. The homepage for this resource could not be loaded. Please contact us if you have any information regarding the current status of this resource.
FAIRsharing.qw67v6	Adverse Drug Reaction Markup Language	EU-ADR ML	The Adverse Drug Reaction Markup Language (EU-ADR ML) was created to as part of the EU-ADR project. The ultimate aim of this project was to develop an innovative approach to the early detection of adverse drug reactions. The status of this format is uncertain as FAIRsharing cannot find documentation for the format itself beyond what is available in this record.
FAIRsharing.qw7qtk	The MOuse NOnCode Lung database	MONOCLdb	MONOCLdb is an integrative and interactive database designed to retrieve and visualize annotations and expression profiles of long-non coding RNAs (lncRNAs) expressed in Collaborative Cross (http://compgen.unc.edu/) founder mice in response to respiratory influenza and SARS infections.
FAIRsharing.qwd1nx	Brain Imaging Network Data Repository	None	We are a leading national institution in brain MR imaging and molecular imaging (given cyclotron and radiopharmacy facilities). These pillars create the core medical imaging equipment infrastructure in Portugal with relevant scientific productivity now expanding to all levels of multimodal imaging. We have unique expertise and equipment for development of imaging markers and studies in brain imaging and respective repositories. This resource has restricted access. Please use the contact details provided to request access.
FAIRsharing.qwz9f2	CEDAR Provisional Classes	CEDARPC	This resource is no longer available because its underlying source material is not suitable for FAIRsharing. 
FAIRsharing.qwzEsc	Institute for Marine and Antarctic Studies Data Portal	IMAS Data Portal	The Institute for Marine and Antarctic Studies (IMAS) Data Portal is a repository used by IMAS and its partners to store multidisciplinary and interdisciplinary research related to temperate marine, Southern Ocean, and Antarctic environments. The portal aims to make IMAS data freely and openly available for the benefit of Australian marine and environmental science as a whole.
FAIRsharing.QxlUSp	ASLS - Soil Profile classifiers	soil-prof	Machine-readable representation of the classifiers described in chapter 8 Soil Profile, by R.C. McDonald and R.F. Isbell, in Australian soil and land survey field handbook (3rd edn). A soil profile is a vertical section of a soil from the soil surface through all its horizons to parent material, other consolidated substrate material or selected depth in unconsolidated material. The data was converted from the print representation to this linked-data form by Linda Gregory assisted by Simon J D Cox.
FAIRsharing.QXSgvF	MirGeneDB.org	MirGeneDB	MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. Version 2.0 contains more than 10,000 genes from 45 organisms representing nearly every major metazoan group, and these microRNAs can be browsed, searched and downloaded.
FAIRsharing.QXwmj1	Simple Image Access Protocol	SIA	The Simple Image Access protocol (SIA) provides capabilities for the discovery, description, access, and retrieval of multi-dimensional image datasets, including 2-D images as well as datacubes of three or more dimensions. SIA data discovery is based on the ObsCore Data Model (ObsCoreDM), which primarily describes data products by the physical axes (spatial, spectral, time, and polarization). Image datasets with dimension greater than 2 are often referred to as datacubes, cube or image cube datasets and may be considered examples of hypercube or n-cube data. In this document the term “image” refers to general multi-dimensional datasets and is synonymous with these other terms unless the image dimensionality is otherwise specified. SIA provides capabilities for image discovery and access. Data discovery and metadata access (using ObsCoreDM) are defined here. The capabilities for drilling down to data files (and related resources) and services for remote access are defined elsewhere, but SIA also allows for direct access to retrieval.
FAIRsharing.QXYuxK	TargetMine	TargetMine	TargetMine integrates many types of data for human, rat and mouse. Flexible queries, export of results and data analysis are available.
FAIRsharing.qy4b7s	real-time quantitative PCR Primer Database	qPrimerDB	The qPrimerDB database stores information on qPCR primers. Accessible through a web front-end providing gene-specific and pre-computed primer pairs across 147 different organisms, including human, mouse, zebrafish, yeast, thale cress, rice, and maize. The qPrimerDB provides an interactive and information-rich web graphical interface to display search and BLAST results as table-based descriptions and associated links. In this database, we provide 3,331,426 of the best primer pairs for each gene based on primer pair coverage (PPC), as well as 47,726,569 alternative gene-specific primer pairs, which can be conveniently batch downloaded. We validated the specificity and efficiency of the qPCR primer pairs for 66 randomly selected genes in six different organisms through qPCR assays and gel electrophoresis. The qPrimerDB database represents a valuable, timesaving resource for gene expression analysis.
FAIRsharing.QyajjI	Unified Data Model	UDM	The aim of the Unified Data Model (UDM) project is to create and publish an open and freely available data format for storage and exchange of experimental information about compound synthesis and biological testing. Originally maintained by Elsevier, ownership of this file format has been transferred to the Pistoia Alliance. Development of the standard is currently focused on making the format more generic and vendor-neutral as well as extending it to cover various screening and compound testing experiments.
FAIRsharing.Qyq85j	COVID-19 Dermatology registry	None	COVID-19 Dermatology registry aims at collect cases of COVID-19 cutaneous manifestations. The registry is open to medical professionals only, from any specialty.
FAIRsharing.qz0rvm	Variant Effect Predictor data format	VEP	A text format devised by Ensembl for the eponymous Variant Effect Predictor tool.
FAIRsharing.qz30cx	GlycoCT sequence format for carbohydrates.	GlycoCT XML	GlycoCT format is devised to describe the carbohydrate sequences, with a controlled vocabulary to name monosaccharides, adopting IUPAC rules to generate a consistent, machine-readable nomenclature, based on a connection table approach, instead of a linear encoding scheme. The format uses a block concept to describe frequently occurring special features of carbohydrate sequences like repeating units. It exists in two variants, a condensed form and a more verbose XML syntax. Sorting rules assure the uniqueness of the condensed form, thus making it suitable as a direct primary key for database applications, which rely on unique identifiers. GlycoCT encompasses the capabilities of the heterogeneous landscape of digital encoding schemata in glycomics and is thus a step forward on the way to a unified and broadly accepted sequence format in glycobioinformatics.
FAIRsharing.qzrbk	Taxonomic Concept transfer Schema	TCS	The development of an abstract model for a taxonomic concept, which can capture the various models represented and understood by the various data providers, is central to this project. This model is presented as an XML schema document that is proposed as a standard to allow exchange of data between different data models. It aims to capture data as understood by the data owners without distortion, and facilitate the query of different data resources according to the common schema model. The TCS schema was conceived to allow the representation of taxonomic concepts as defined in published taxonomic classifications, revisions and databases. As such, it specifies the structure for XML documents to be used for the transfer of defined concepts. Valid transfer documents may either explicitly detail the defining components of taxon concepts, transfer GUIDs referring to defined taxon concepts (if and when these are available) or a mixture of the two.
FAIRsharing.r09jt6	JWS Online	JWS Online	JWS Online is a Systems Biology tool for the construction, modification and simulation of kinetic models and for the storage of curated models.
FAIRsharing.r0r2wd	Root System Markup Language	RSML	RSML follows the XML standard to store 2D or 3D image metadata, plant and root properties and geometries, continuous functions along individual root paths and a suite of annotations at the image, plant or root scales, at one or several time points. Plant ontologies are used to describe botanical entities that are relevant at the scale of root system architecture. An xml-schema describes the features and constraints of RSML and open-source packages have been developed in several languages (R, Excel, Java, Python, C#) to enable researchers to integrate RSML files into popular research workflow.
FAIRsharing.r18yt0	data.eNanoMapper.net	data.eNanoMapper.net	data.eNanoMapper.net is a public database hosting nanomaterials characterization data and biological and toxicological information. The database provides various possibilities to search and explore information, and to download data in various standard formats. The database supports data upload through configurable Excel templates.
FAIRsharing.r1k8kz	Paleobiology Database	PaleoBioDB	The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data. It is maintained by an international non-governmental group of paleontologists.
FAIRsharing.r1rjvx	Process and Observation Ontology	PO2	A core ontology for modeling transformation processes and their observations. PO2 is part of an interdisciplinary project called Delicious concerning the production and transformation processes in food science. The project combines data from different disciplines like food composition, food structure, sensorial perception and nutrition.
FAIRsharing.r2ts5t	FASTQ Sequence and Sequence Quality Format	None	FASTQ is a text-based file format for sharing sequencing data combining both the sequence and an associated per base quality score.
FAIRsharing.r30na3	Biosurveillance Resource Directory Disease Ontology	BRD Disease Ontology	Our disease ontology provides information on infectious diseases, disease synonyms, transmission pathways, disease agents, affected populations and disease properties. Diseases have been grouped into syndromic disease categories, such that programmers can look through relevant categories, as well as at specific diseases. Organisms, linked to both agents and populations, are structured hierarchically, to provide multiple levels of organism resolution. In addition, both disease transmission and relevant disease properties are available to search. Disease properties include tags like 'notifiable diseases' and 'economic importance' to flag particular disease characteristics that may be of interest, but are not captured elsewhere.
FAIRsharing.r34hjr	Minimal Standard Terminology of Digestive Endoscopy, French	MSTDE-FRE	Metathesaurus Version of Minimal Standard Terminology Digestive Endoscopy, French Translation, 2001
FAIRsharing.r3fzzc	Woods Hole Open Access Server	WHOAS	The mission of the Woods Hole Open Access Server, WHOAS is to capture, store, preserve, and redistribute the intellectual output of the Woods Hole scientific community in digital form. WHOAS, an institutional repository, is managed by the MBLWHOI Library as a service to the Woods Hole scientific community.
FAIRsharing.r3pbp3	CAPS-DB : a structural classification of helix-capping motifs	CAPS-DB	CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.
FAIRsharing.r3vtvx	Ecological Metadata Language	EML	The Ecological Metadata Language (EML) metadata standard was originally developed for the earth, environmental and ecological sciences. It is based on prior work done by the Ecological Society of America and associated efforts. It has been developed to document any research data, and as such can be used outside of these original subject areas. EML is implemented as a series of XML document types that can by used in a modular and extensible manner to document ecological data. Each EML module is designed to describe one logical part of the total metadata that should be included with any ecological dataset.
FAIRsharing.r4864g	Carbon Dioxide Information Analysis Centre Database	CDIAC Database	The Carbon Dioxide Information Analysis Center (CDIAC), is the primary climate change data and information analysis center for the US Department of Energy. CDIAC's data holdings include estimates of carbon dioxide emissions from fossil-fuel consumption and land-use changes; records of atmospheric concentrations of carbon dioxide and other radiatively active trace gases; carbon cycle and terrestrial carbon management datasets and analyses; and global/regional climate data and time series. Operation of CDIAC will cease on the 30th September 2017, however the data will still be available beyond this date.
FAIRsharing.r49beq	FAIR Metrics - Identifier Uniqueness	FM-F1A	The FM-F1A Metric provides a measurement of whether or not there is a scheme to uniquely identify the digital resource. An identifier scheme is valid if and only if it is described in a repository that can register and present such identifier schemes (e.g. fairsharing.org). Information about the identifier scheme must be presented with a machine-readable document containing the FM1 attribute with the URL to where the scheme is described. see specification for implementation. This metric applies to part F1 of the FAIR Principles.
FAIRsharing.r4ph5f	Image Data Archive	IDA	The LONI Image Data Archive (IDA) is a user-friendly environment for archiving, searching, sharing, tracking and disseminating neuroimaging and related clinical data. The IDA is utilized for dozens of neuroimaging research projects across North America and Europe and accommodates MRI, PET, MRA, DTI and other imaging modalities. The Image & Data Archive (IDA) provides tools and resources for de-identifying, integrating, searching, visualizing and sharing a diverse range of neuroscience data, helping facilitate collaborations between scientists worldwide.
FAIRsharing.r87bgr	CDISC Clinical Data Acquisition Standards Harmonization	CDISC CDASH	CDASH establishes a standard way to collect data in a similar way across studies and sponsors so that data collection formats and structures provide clear traceability of submission data into the Study Data Tabulation Model (SDTM), delivering more transparency to regulators and others who conduct data review.
FAIRsharing.r90425	dbMHC	dbMHC	dbMHC provides access to HLA sequences, tools to support genetic testing of HLA loci, HLA allele and haplotype frequencies of over 90 populations worldwide, as well as clinical datasets on nematopoietic stem cell transplantation, and insulin dependant diabetes mellitus (IDDM), Rheumatoid Arthritis (RA), Narcolepsy and Spondyloarthropathy. All clinical datasets housed at the dbMHC provide access to genotypic and phenotypic data on anonimyzed samples with aggregate query functions, and complete download capability.
FAIRsharing.rab28f	Skin Physiology Ontology	SPO	The Skin Physiology Ontology is an ontology with 339 terms. We have struggled to find any further information about this ontology. If you know more, please do contact the FAIRsharing team.
FAIRsharing.rafti9	University of Hong Kong DataHub	HKU DataHub	The University of Hong Kong (HKU) DataHub is a comprehensive repository for research data and other forms of scholarly outputs provided by the University of Hong Kong Libraries. DataHub, powered by Figshare, is the cloud platform for storing, citing, sharing, and discovering research data and all scholarly outputs. It collects, preserves, and provides stable, long-term global open access to a wide range of research data and scholarly outputs created by HKU researchers and postgraduate students.
FAIRsharing.rb2drw	InnateDB	InnateDB	InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.
FAIRsharing.rbba3x	Genetic Epidemiology Simulation Database	GESDB	GESDB is a platform for sharing simulation data and discussion of simulation techniques for human genetic studies. The database contains simulation scripts, simulated data, and documentations from published manuscripts. The forum provides a platform for Q&A for the simulated data and exchanging simulation ideas. GESDB aims to promote transparency and efficiency in simulation studies for human genetic studies.
FAIRsharing.rbp5wp	IBP Crop Research Ontology	CO_715	The IBP Crop Research Ontology describes experimental design, environmental conditions and methods associated with the crop study/experiment/trait and their evaluation. It has been adapted from the database management system (DMS) and germplasm management system (GMS) of the International Crop Information System (ICIS) model. This ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms.
FAIRsharing.rbpqg	PGxO	PGXO	PGxO: a lite Pharmacogenomic Ontology. This ontology aims at providing a small set of concepts and roles that may type elements of pharmacogenomic relationships. Its concepts has been mapped to other existing ontologies. Mappings are not included in this version for lisibility purposes. Mapping are available on demand.
FAIRsharing.rcbwsf	Giga Science Database	GigaDB	GigaDB primarily serves as a repository to host data and tools associated with articles in GigaScience; however, it also includes a subset of datasets that are not associated with GigaScience articles. GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support an article or study.
FAIRsharing.RCUuvt	FAIR Maturity Indicator Gen2-MI-I2B	None	The FAIR Maturity Indicator Gen2-MI-I2B measures if the (meta)data uses vocabularies that are, themselves, FAIR. In this strict Maturity Indicator, we test if the vocabulary terms resolve to machine-readable linked data. A second Maturity Indicator (Gen2-FM-I2A) is looser than this MI.
FAIRsharing.rd1j6t	Brain Imaging Data Structure	BIDS	BIDS is a simple, easy to use standard for organizing and describing outputs of neuroimaging experiments.
FAIRsharing.rd6gxr	SIMBAD Astronomical Database	SIMBAD	SIMBAD provides information on astronomical objects of interest which have been studied in scientific articles. It provides a bibliography as well as basic information such as the nature of the object, its coordinates, magnitudes, proper motions and parallax, velocity/redshift, size, spectral or morphological type, and the multitude of names (identifiers) given in the literature.
FAIRsharing.RdHnQX	BioSimulators conventions for the inputs, outputs, and capabilities of biosimulation software tools	BioSimulators conventions	The BioSimulators conventions encompass several conventions for biosimulation tools (see below). In combination with modeling languages such as Cell-ML and SBML, SED-ML, KISAO, and COMBINE/OMEX, the BioSimulators standards enable investigators to use compliant biosimulation tools to execute simulations with the same syntax and generate consistent results. (a) A format for describing the specifications of a biosimulation tool including its name and version; a description of the tool; the modeling frameworks (e.g., logical, constraint-based, kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BNGL, SBML) that the tool supports; the parameters of each algorithm, their data types, and their default values; links to the tool and documentation about the tool; and additional metadata such as citations for the tool.  (b) Specifications for the syntax and semantics of the inputs (command-line arguments) and outputs (reports and charts of simulation results) of command-line interfaces for biosimulation tools. (c) Specifications for (i) the entry points of Docker images of biosimulation tools and (ii) using Docker labels to annotate basic metadata about images such as the name and version of the simulation tool inside the image. (d) A format for describing reports of simulation results, including the numerical predictions, as well as metadata about the semantic meaning of each axis and each individual row and column.
FAIRsharing.re1278	Omics Discovery Index	OmicsDI	The Omics Discovery Index (OmicsDI) provides dataset discovery across a heterogeneous, distributed group of Transcriptomics, Genomics, Proteomics and Metabolomics data resources, including both open and controlled access data resources. The resource provides a short description of every dataset, including accession, description, sample/data protocols biological evidences, and publication. Based on these metadata, OmicsDI provides extensive search capabilities, as well as identification of related datasets by metadata and data content where possible. In particular, OmicsDI identifies groups of related, multi-omics datasets across repositories by shared identifiers.
FAIRsharing.reenq1	Cultural Objects Name Authority	CONA	The Cultural Objects Name Authority (CONA) compiles titles, creator attributions, physical characteristics, depicted subjects, and other metadata about visual works, such as architecture, painting, sculpture, and many other types of works. CONA may contain information about objects that are ceremonial or utilitarian in nature, but are not necessarily labeled as art according to traditional Western aesthetics. Architecture, destroyed works, and works depicted in visual surrogates or other works are also included. CONA also includes Getty Iconography Authority (IA) , which resides in the same editorial system as CONA. The IA includes proper names and other information for named events, themes and narratives from religion/mythology, legendary and fictional characters, themes from literature, works of literature and performing arts, and legendary and fictional places. CONA and IA are part of 5 Getty Vocabularies intended to provide terminology and other information about the objects, artists, concepts, and places important to various disciplines that specialize in art, architecture, and other material culture.
FAIRsharing.reqeqw	Biological Dynamics Markup Language	BDML	Biological Dynamics Markup Language is an open unified format for representing quantitative data of biological dynamics. BDML can describe a wide variety of spatiotemporal dynamics of biological objects from molecules to cells to organisms.
FAIRsharing.ret599	Syndromic Surveillance Ontology	SSO	Most syndromic surveillance systems use data from ED visits, often free-text chief complaints. Classification of chief complaints into syndromes is often inconsistent, due to the lack of agreement about the concepts that define a syndrome and how individual terms or strings map to these concepts. The Syndromic Surveillance Ontology addresses this problem by formally encoding a set of consensus definitions for syndromes in terms of ED chief complaints in a standard shareable format. The goal of the project is to ensure that consensus syndrome definitions are disseminated broadly, maintained collaboratively, and incorporated easily into automated systems.
FAIRsharing.reybx2	Registry Interchange Format - Collections and Services	RIF-CS	The Registry Interchange Format - Collections and Services (RIF-CS) Schema was developed as a data interchange format for supporting the electronic exchange of collection and service descriptions. It organises information about collections and services into the format required by the ANDS Collections Registry. RIF-CS is based on the international standard, ISO 2146:2010 "Information and documentation -- Registry services for libraries and related organisations".
FAIRsharing.rf3m4g	Plant Genomics and Phenomics Research Data Repository	PGP	This repository provides several plant genomic and phenotypic datasets resulting from IPK and German Plant Phenotyping Network (DPPN) research activities. It was established in January 2015. The background of the study is in plant genetic resources, in particular the association of genotypes and phenotypes. This archive aims to provide data from the "system plant" - from the root to bloom and seed, as well from sequence analysis to systems biology.Ge
FAIRsharing.rf4pmz	Ontology for Systems Chemical Biology and Chemogenomics	Chem2Bio2RDF	Chem2Bio2RDF has been created by aggregating data from multiple chemogenomics repositories and is cross-linked into Bio2RDF and LODD. There is also a linked-path generation tool to facilitate SPARQL query generation, and have created extended SPARQL functions to address specific chemical/biological search needs. Chem2Bio2RDF can be used to investigate polypharmacology, identification of potential multiple pathway inhibitors, and the association of pathways with adverse drug reactions. 
FAIRsharing.rfLD2u	Enzyme Commission Number	EC Number	In its report in 1961, the first Enzyme Commission devised a system for enzyme classification that also serves as a basis for assigning code numbers. These code numbers, prefixed by EC, contain four elements separated by points / full stops and are now widely in use. The first number shows to which of the six main divisions (classes) the enzyme belongs and therefore identifies the class of reaction catalysed. The second number indicates the subclass, and generally contains information about the type of compound or group involved. The third figure gives the sub-subclass, which further specifies the type of reaction involved. The fourth figure is the serial number of the enzyme in its sub-subclass.
FAIRsharing.rfrsk4	Tribolium Ontology	TRON	TrOn is an ontology about the anatomical structures of the red flour beetle Tribolium castaneum in the developmental stages larva, pupa and adult.
FAIRsharing.rg2rmw	Springer Nature Research Data Policy Type 1	None	The Springer Nature Research Data Policy Type 1 encourages data sharing and data citation. Journals adhering to this policy type encourage authors, where possible and applicable, to deposit data that support the findings of their research in a public repository. Authors and editors who do not have a preferred repository should use one of the recommended resources listed in this policy and those listed in the policies this record is an extension of. Journals adhering to this policy recommend 1) the resources listed directly within this record, and 2) all resources listed in this record's parent policies (see the "extends" relationship).
FAIRsharing.rg2vmt	GenBank Sequence Format	None	GenBank Sequence Format (GenBank Flat File Format) consists of an annotation section and a sequence section. The start of the annotation section is marked by a line beginning with the word "LOCUS". The start of sequence section is marked by a line beginning with the word "ORIGIN" and the end of the section is marked by a line with only "//".
FAIRsharing.rgb21	Receptor Tyrosine Kinase database	RTKdb	A database dedicated to the tyrosine kinase recepter.
FAIRsharing.rgcsW6	Chlamydiae Database	ChlamDB	ChlamDB is a comparative genomics database covering the entire Chlamydiae phylum as well as their closest relatives belonging to the Planctomycetes-Verrucomicrobiae-Chlamydiae (PVC) superphylum. Genomes can be compared, analyzed and retrieved using accessions numbers of the most widely used databases including COG, KEGG ortholog, KEGG pathway, KEGG module, Pfam and InterPro. Candidate effectors of the Type III secretion system (T3SS) were identified using four in silico methods. The identification of orthologs among all PVC genomes allows users to perform large-scale comparative analyses and to identify orthologs of any protein in all genomes integrated in the database. Phylogenetic relationships of PVC proteins and their closest homologs in RefSeq, comparison of transmembrane domains and Pfam domains, conservation of gene neighborhood and taxonomic profiles can be visualized using dynamically generated graphs, available for download. As a central resource for researchers working on chlamydia, chlamydia-related bacteria, verrucomicrobia and planctomyces, ChlamDB facilitates the access to comprehensive annotations and integrates multiple tools for comparative genomic analyses.
FAIRsharing.rh0c0t	LINCS Extended Metadata Standard: Differentiated Cells	LINCS 2: Differentiated Cells	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project.
FAIRsharing.rhhrtx	Bone Dysplasia Ontology	BDO	The Bone Dysplasia ontology provides a comprehensive and formal representation of the different domain concepts involved in documenting the full complexity of the skeletal dysplasia domain. It captures and combines the genetic features that discriminate the bone dysplasias with the multitude of phenotypic characteristics manifested by patients and required to be taken into account in order to support the diagnosis process.
FAIRsharing.rhpjhv	FlyMine	FlyMine	FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Its main focus is genomic and proteomics data for Drosophila and other insects. It provides access to integrated data at a number of different levels, from browsing to construction of complex queries, which can be executed on either single items or lists.
FAIRsharing.rhwjhw	Nature Publishing Group - Nature Cell Biology - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.riJmuf	NISO Metadata for Images in XML Schema	NISO MIX	The XML-based schema for encoding the NISO Data Dictionary - Technical Metadata for Digital Still Images (ANSI/NISO Z39.87-2006).
FAIRsharing.RJ3PDJ	AUSSDA Dataverse	AUSSDA Dataverse	AUSSDA Dataverse is a research data repository running on the open source web application Dataverse. The archive makes it possible to find, share, preserve and cite data. AUSSDA archives a wide variety of social sciences data, with a focus on quantitative research methods and data. As of 2020, it stores more than 2,000 files of social sciences research data on topics such as political behavior and attitudes, social stratification, labor market and employment. AUSSDA is the national service provider for Austria in the Consortium of European Social Science Data Archives CESSDA ERIC.
FAIRsharing.RJ99Pj	HumanMine	HumanMine	HumanMine integrates many types of data for Homo sapiens and Mus musculus. Users can run flexible queries, export results and analyse lists of data.
FAIRsharing.rk682s	BioProject XML Schema	None	This is a XML Schema specification of BioProject data. A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project.
FAIRsharing.rkq0vj	The Chromosome 7 Annotation Project	None	The objective of this project is to generate the most comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications.
FAIRsharing.rkRb4s	Citation Style Language XML Schema	CSL Schema	The Citation Style Language (CSL) is an XML-based format to describe the formatting of citations, notes and bibliographies, offering: an open format, compact styles, support for style requirements, automatic style localization, infrastructure for style distribution and updating, and many freely available styles.
FAIRsharing.rkwr6y	Oxford University Research Archive	ORA	The Oxford University Research Archive (ORA) serves as an institutional repository for the University of Oxford and is home to the scholarly research output of its members. ORA-Data is an extra function of ORA which is aimed at University of Oxford researchers who have either deposited data at external archives and want a centralised record of this, or who need a repository to deposit research data. Using the service will prevent loss of data and increase the impact of your research. It provides permanent links between publications and underlying data, and can be used as a repository for secure, long-term preservation of raw data and associated documentation. It helps Oxford researchers fulfil funding bodies' requirements to take active steps in preserving data and documentation. Digital object identifiers (DOIs) are assigned to each item in the resource for citation and attribution. Even though only Oxford researchers can upload their data in ORA, the search facility is publicly accessible.
FAIRsharing.RlEMBA	Ontology for Provenance and Plans	P-PLAN	The Ontology for Provenance and Plans (P-Plan) is an extension of the PROV-O ontology [PROV-O] created to represent the plans that guided the execution of scientific processes. P-Plan describes how the plans are composed and their correspondence to provenance records that describe the execution itself.
FAIRsharing.rm14bx	NeuroVault	NeuroVault	The purpose of this database is to collect and distribute statistical maps of the human brain. Such maps are acquired by scientist all around the world using brain imaging techniques such as MRI or PET in a combined effort to map the functions and structures of the brain.
FAIRsharing.rm5xc3	Gastroenterology Clinical Cases	GCC	Gastroenterology Clinical Cases is an ontology to describe clinical case terminologies associated with Gastroenterology. The link for this record no longer works and there is no current information available at present.
FAIRsharing.rme9an	Nature Publishing Group - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.rn1pxg	Plant Natural Antisense Transcripts Database	PlantNATsDB	Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform for annotating and discovering NATs by integrating various data sources. PlantNATsDB also provides an integrative, interactive and information-rich web graphical interface to display multidimensional data, and facilitate plant research community and the discovery of functional NATs.
FAIRsharing.rn9wzc	Gel electrophoresis Markup Language	PSI GelML	GelML is a data exchange format for describing the results of gel electrophoresis experiments. GelML is developed as a HUPO-PSI working group.
FAIRsharing.rnckxp	Biodiversity Ontology	BOF	An ontology of biodiversity of INPA, available via BioPortal.
FAIRsharing.rnx28e	Expression Database in 4D	4DXpress	This database provides a platform to query and compare gene expression data during the development of the major model animals (zebrafish, drosophila, medaka, mouse). The high resolution expression data was acquired through whole mount in situ hybridsation-, antibody- or transgenic experiments.
FAIRsharing.rOCqic	HIV and COVID-19 Registry in Europe	None	In March the NEAT ID Foundation initiated the development of a simple Data “Dashboard” to monitor the progress of COVID-19 in HIV infected patients across Europe in real time. The Dashboard shows at European and Country level the number of cases reported to NEAT ID with COVID-19 co-infection with HIV, the number of hospitalisations and the number of deaths (from sites who have contributed to date).
FAIRsharing.rq71dw	DNAtraffic	DNAtraffic	A database for systems biology of DNA dynamics during the cell life.
FAIRsharing.rrms81	Terminology of Anatomy of Human Embryology	TAHE	"Terminology of Anatomy of Human Embryology" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1536. This text was generated automatically. If you work on the project responsible for "Terminology of Anatomy of Human Embryology" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.rs2815	Protein Data Bank Japan	None	The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
FAIRsharing.rSuIcM	National Aeronautics and Space Administration Ames Format for Data Exchange	NASA Ames Format	The National Aeronautics and Space Administration Ames Format for Data Exchange (NASA Ames Format) is composed of ASCII data files that are written in one of nine "standard" file formats. The ASCII data file formats were developed at Ames Research Center by R. Stephen Hipskind and Steven E. Gaines in 1990 to standardize the file formats used for in-the-field data exchange during aircraft field experiments. Each ASCII data file consists of a file header, followed by the data records. The file header describes the data and the origin of the file. The data are conceptually divided into Independent Variables and Dependent Variables. The Dependent Variables are further divided into Primary and Auxiliary Variables.
FAIRsharing.rt38zh	Compartmentalized Protein-Protein Interaction	ComPPI	The compartmentalized protein-protein interaction database (ComPPI), provides qualitative information on the interactions, proteins and their localizations integrated from multiple databases for protein-protein interaction network analysis.
FAIRsharing.rt4gyp	Disordered Binding Sites Database	DIBS	Disordered Binding Sites (DIBS) is a repository of protein complexes that are formed by ordered and disordered proteins. Intrinsically disordered proteins (IDPs) do not have a stable 3D structure in isolation and therefore they defy structure determination by X-ray or NMR. However, many IDPs bind to ordered proteins and as a result of the interaction adopt a stable structure. In accord, complex structures involving binding sites in IDPs are available. DIBS offers a collection of these complexes where exactly one protein chain is disordered and all other proteins are ordered (i.e. are stable in their isolated form that is approved by available monomeric structures).
FAIRsharing.rtm51	Gene Product Annotation Data	GPAD 1.1	The need for a way to represent genes/gene products separately from annotations, as well as the need to use the evidence ontology has lead to the creation of the GPAD (Gene Product Annotation Data) and GPI (Gene Product Information) formats. Whilst GPAD and GPI have been defined for use within the Gene Ontology Consortium for GO annotation, this specification is designed to be reusable for analagous ontology-based annotation - for example, gene phenotype annotation.
FAIRsharing.rtndct	The Protein Database	Protein	The Entrez Protein search and retrieval system contains protein entries that have been compiled from a variety of sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding regions in GenBank and RefSeq.
FAIRsharing.rtzdrx	Bacterial interlocked Process ONtology	BIPON	BiPON is an ontology permitting a multi-scale systemic representation of bacterial cellular processes and the coupling to their mathematical models. BiPON is further composed of two sub- ontologies, bioBiPON and modelBiPON. bioBiPON aims at organizing the systemic description of biological information while modelBiPON aims at describing the mathematical models (including parameters) associated to each biological process.
FAIRsharing.RvBRMp	Pairs file format	.pairs	A standard text format for pairs of genomic loci given as 1bp point positions, applicable to chromosome conformation experiments. Pairs files are produced as intermediate files in most Hi-C analysis pipelines and can be indexed and queried by the Pairix software.
FAIRsharing.rvqgm3	Nature Publishing Group - Nature Biotechnology - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.rvssy8	Terminology of Anatomy of Human Histology	TAHH	"Terminology of Anatomy of Human Histology" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1535. This text was generated automatically. If you work on the project responsible for "Terminology of Anatomy of Human Histology" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.rvvbCB	Meta-omics Data and Collection Objects	MOD-CO	The MOD-CO schema is a conceptual and procedural meta-omics schema developed as part of the MOD-CO project. The schema is represented in a number of different formats. MOD-CO is a generic and comprehensive schema providing specifications useful for later software implementation and facilitating international standardisation processes. Certain implementations and use cases are provided. MOD-CO has a hierarchical organization of concepts describing collection samples, as well as products and data objects being generated during operational workflows. It is focused on object trait descriptions as well as on operational aspects and thereby may serve as a backbone for R&D laboratory information management systems with functions of an electronic laboratory notebook.
FAIRsharing.rwd4wq	cis-Regulatory Element Database	cisRED	The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. Sequence inputs include low-coverage genome sequence data and ENCODE data.
FAIRsharing.rxazmf	Neomark Oral Cancer-Centred Ontology	NEOMARK3	An ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.
FAIRsharing.rxe7z2	PDZBase	PDZBase	PDZBase is a manually curated protein-protein interaction database developed specifically for interactions involving PDZ domains. PDZBase currently contains 339 experimentally determined protein protein interactions.
FAIRsharing.rxy5xm	Unidata Data Services	None	A collection of earth science-related data available to the research community.
FAIRsharing.Ry4stC	EMODnet Geology	EMODnet Geology	The EMODnet geology portal provides free access to (i) geological data and metadata held by various geoscience organisations in Europe, delivered in accordance with international standards, and (ii) geological data products compiled at scales of 1:1,000,000, 1:250,000 and 1:100,000 or finer where the underlying data permit.
FAIRsharing.RycpEU	IVOA Registry Interfaces	None	The VO Registry provides a mechanism with which VO applications can discover and select resources that are relevant for a particular scientific problem. This specification defines the operation of this system. It is based on a general, distributed model composed of searchable and publishing registries, as introduced at the beginning of this document. The main body of the IVOA Registry Interfaces specification has three components: (a) an interface for harvesting publishing registries, which builds upon the Open Archives Initiative Protocol for Metadata Harvesting. (b) A VOResource extension for registering registry services and description of a central list of said IVOA registry services. (c) A discussion of the Registry of Registries as the root component of data discovery in the VO.
FAIRsharing.rYgXhw	Observation Data Model Core Components and its Implementation in the Table Access Protocol	ObsCoreDM	This document defines the core components of the Observation data model that are necessary to perform data discovery when querying data centers for astronomical observations of interest. It exposes use-cases to be carried out, explains the model and provides guidelines for its implementation as a data access service based on the Table Access Protocol (TAP). It aims at providing a simple model easy to understand and to implement by data providers that wish to publish their data into the Virtual Observatory. This interface integrates data modeling and data access aspects in a single service and is named ObsTAP. In this document, the Observation Data Model Core Components (ObsCoreDM) defines the core components of queryable metadata required for global discovery of observational data. It is meant to allow a single query to be posed to TAP services at multiple sites to perform global data discovery without having to understand the details of the services present at each site. It defines a minimal set of basic metadata and thus allows for a reasonable cost of implementation by data providers.
FAIRsharing.RyVjoS	National Cancer Institute's Genomic Data Commons	NCI GDC	The National Cancer Institute’s (NCI’s) Genomic Data Commons (GDC) is a data sharing The National Cancer Institute's Genomic Data Commons (GDC) was created to promote precision medicine in oncology. It supports the import and standardization of genomic and clinical data from cancer research programs. The GDC contains NCI-generated data from some of the largest and most comprehensive cancer genomic datasets, including The Cancer Genome Atlas (TCGA) and Therapeutically Applicable Research to Generate Effective Therapies (TARGET). For the first time, these datasets have been harmonized using a common set of bioinformatics pipelines, so that the data can be directly compared. As a growing knowledge system for cancer, the GDC also enables researchers to submit data, and harmonizes these data for import into the GDC.
FAIRsharing.RYXNBS	Space-Time Coordinate Metadata for the Virtual Observatory	STC	The Space-Time Coordinate (STC) metadata for the Virtual Observatory provides a standard for users to specify the spatial coordinates they work in; these will, for most astronomical users, be some flavor of equatorial coordinates. However, there are many variations, not only in terms of different equatorial systems, either from historical collections (FK1-4) or in the uses of Galactic or ecliptic coordinates, but also geographic, barycentric, planetocentric, and instrumental detector coordinates, most of them in spherical as well as Cartesian form. In addition, high-accuracy requirements and special situations such as spacecraft-based observatories create the need for specifying the origin of such coordinate frames – in most cases the location of the observatory. The same is true for time and spectral coordinates: for many applications it may not matter, but there are situations where it is crucial to know what timescale was used, where time was measured, or what inertial standard of rest was used to express the frequency. What this amounts to is that for spatial coordinates it is necessary to know the coordinate system (its type and orientation) and the origin that were used, for time the timescale (UTC, TT, TAI, TDB, etc.) and the spatial reference position, for the spectral coordinate the origin in phase space, and for redshifts (Doppler velocity) the definition as well as the phase space origin. This standard explains the various components, highlights some implementation considerations, presents a complete set of UML diagrams, and discusses the relation between STC and certain other parts of the Data Model. Two serializations are described in this standard document: XML Schema (STC-X) and String (STC-S); the former is an integral part of this Recommendation.
FAIRsharing.rz4vfg	FASTA Sequence Format	FASTA	FASTA format is a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes. The format also allows for sequence names and comments to precede the sequences.
FAIRsharing.rz77m6	Transition Markup Language	HUPO-PSI TraML	The HUPO PSI Mass Spectrometry Standards Working Group (MSS WG) has developed a specification for a standardized format for the exchange and transmission of transition lists for selected reaction monitoring (SRM) experiments. This specification has now completed rigorous review with the PSI document process and is complete
FAIRsharing.rz7h29	Federal Interagency Traumatic Brain Injury Research Informatics System	FITBIR	The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system is an extensible, scalable informatics platform for TBI relevant imaging, assessment, genomics, and other data types. It was developed to share data across the entire TBI research field and to facilitate collaboration between laboratories, as well as interconnectivity with other informatics platforms.
FAIRsharing.rzLrS8	Minimum Information Required for A Glycomics Experiment - Guidelines for Reporting NMR Data on Glycan Structures	MIRAGE NMR Guidelines - Glycan Structures	These guidelines are proposed to comprehensively describe NMR experiments and data obtained for the characterization of glycan composition, glycan conformation and glycan dynamics both for natural and unnatural glycans.
FAIRsharing.S09se7	CaltechDATA	CaltechDATA	CaltechDATA is an institutional data repository for Caltech. Caltech library runs the repository to preserve the accomplishments of Caltech researchers and share their results with the world. Caltech-associated researchers can upload data, link data with their publications, and assign a permanent DOI so that others can reference the data set. The repository also preserves software and has automatic Github integration. All files present in the repository are open access or embargoed, and all metadata is always available to the public.
FAIRsharing.s0gpch	HOM-DATASRC-ORTHO	DATASRC-ORTHO	"HOM-DATASRC-ORTHO" is a standard that was listed on BioPortal. However, it has been subsequently removed. We have been unable to find any further information on this standard and believe it to be deprecated. Please contact us if you know any further information.
FAIRsharing.s0jj2t	Minimum Information About BIobank data Sharing	MIABIS	MIABIS represents the minimum information required to initiate collaborations between biobanks and to enable the exchange of biological samples and data. The aim is to facilitate the reuse of bio-resources and associated data by harmonizing biobanking and biomedical research.
FAIRsharing.s0k240	Template for Intervention Description and Replication	TIDieR	To improve the completeness of reporting, and ultimately the replicability, of interventions, an international group of experts and stakeholders developed the Template for Intervention Description and Replication (TIDieR) checklist and guide. The 12 item TIDieR checklist is an extension of the CONSORT 2010 statement (item 5) and the SPIRIT 2013 statement (item 11). For authors of reports of randomised trials, it is recommended that TIDieR is used in conjunction with the CONSORT checklist: when authors complete item 5 of the CONSORT checklist, they should insert “refer to TIDieR checklist” and provide a separate completed TIDieR checklist. Similarly, for authors submitting protocols of trials, the TIDieR checklist can be referred to when dealing with item 11 of the SPIRIT 2013 checklist (although TIDieR items 10 and 12 are not applicable to protocols as they cannot be completed until the study is complete).
FAIRsharing.s12wda	Bro_Name	BRO_ACRONYM	Uploading ontology for the first time
FAIRsharing.s1r9bw	OpenNeuro	OpenNeuro	The OpenNeuro project (formerly known as the OpenfMRI project) was established in 2010 to provide a resource for researchers interested in making their neuroimaging data openly available to the research community. It is managed by Russ Poldrack and Chris Gorgolewski of the Center for Reproducible Neuroscience at Stanford University. The project has been developed with funding from the National Science Foundation, National Institute of Drug Abuse, and the Laura and John Arnold Foundation.
FAIRsharing.s22qdj	UCSC Genome Browser database	None	Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.
FAIRsharing.s248mf	W3C HCLS Dataset Description	None	Access to consistent, high-quality metadata is critical to finding, understanding, and reusing scientific data. This document describes a consensus among participating stakeholders in the Health Care and the Life Sciences domain on the description of datasets using the Resource Description Framework (RDF). This specification meets key functional requirements, reuses existing vocabularies to the extent that it is possible, and addresses elements of data description, versioning, provenance, discovery, exchange, query, and retrieval.
FAIRsharing.s2txbp	CancerData	candat	The CancerData site is an effort of the Medical Informatics and Knowledge Engineering team (MIKE for short) of Maastro Clinic, Maastricht, The Netherlands. It offers a central, online repository for the sustained storage of clinical protocols, publications and research datasets. The data that are offered can vary from documents, spreadsheets to (bio-)medical images and treatment simulations. CancerData is a registered member of DataCite, which is an international consortium and member of the International DOI Foundation. Via DataCite, we have the ability to offer persistent identifiers to the datasets via the registration of Digital Object Identifiers (DOI).
FAIRsharing.s39p61	Ontologia proj alternativa	ontologia	There is currently no up to date information on Ontologia proj alternativa.
FAIRsharing.s3swh2	Minimum Information about an fMRI Study	MIfMRI	These reporting guidelines were developed by the Committee on Best Practices in Data Analysis and Sharing (COBIDAS) of the Organization for Human Brain Mapping.
FAIRsharing.s51qk5	CDISC Study Data Tabulation Model	CDISC SDTM	SDTM provides a standard for organizing and formatting data to streamline processes in collection, management, analysis and reporting. Implementing SDTM supports data aggregation and warehousing; fosters mining and reuse; facilitates sharing; helps perform due diligence and other important data review activities; and improves the regulatory review and approval process. SDTM is also used in non-clinical data (SEND), medical devices and pharmacogenomics/genetics studies.
FAIRsharing.s54t82	Material Compound	MATRCOMPOUND	Material Compound details from SWEET ontology
FAIRsharing.s63y3p	SMART Protocols	SP	The SeMAntic RepresenTation for Protocols, SMART Protocols, provides a structured OWL vocabulary of experimental protocols. SMART Protocols ontology includes two modules, SP-document and SP-workflow. SP-document, aims to provide a structured vocabulary of concepts to represent information necessary and sufficient for reporting an experimental protocol. SP-Workflow represents: i) the executable elements of a protocol, protocol instructions; ii) the experimental actions and material entities that participates in instructions (sample/specimen, organisms, reagents, instruments); and iii) the order of execution of the instructions.
FAIRsharing.S6BoUk	w3id.org	w3id	A secure, permanent URL re-direction service for Web applications. This service is run by the W3C Permanent Identifier Community Group. Web applications that deal with Linked Data often need to specify and use URLs that are very stable. They utilize services such as this one to ensure that applications using their URLs will always be re-directed to a working website. This website operates like a switchboard, connecting requests for information with the true location of the information on the Web. The switchboard can be reconfigured to point to a new location if the old location stops working.
FAIRsharing.S6nB7s	Genome-wide Integrated Analysis of gene Networks in Tissues 2.0	GIANT 2.0	GIANT2 (Genome-wide Integrated Analysis of gene Networks in Tissues) is an interactive web server that enables biomedical researchers to analyze their proteins and pathways of interest and generate hypotheses in the context of genome-scale functional maps of human tissues. With GIANT2, researchers can explore predicted tissue-specific functional roles of genes and reveal changes in those roles across tissues, all through interactive multi-network visualizations and analyses.
FAIRsharing.s6zfkg	Nursing Interventions Classification	NIC	The Nursing Interventions Classification (NIC) is a comprehensive, research-based, standardized classification of interventions that nurses perform. It is useful for clinical documentation, communication of care across settings, integration of data across systems and settings, effectiveness research, productivity measurement, competency evaluation, reimbursement, and curricular design. The Classification includes the interventions that nurses do on behalf of patients, both independent and collaborative interventions, both direct and indirect care.
FAIRsharing.s7ryc2	Ontology for Data Mining Investigations	OntoDM-KDD	OntoDM-KDD is an ontology for representing data mining investigations. Its goal is to allow the representation of knowledge discovery processes and be general enough to represent the data mining investigations. The ontology is based on the CRISP-DM process methodology.
FAIRsharing.s8eeek	Genome Annotation File version 2	None	Annotation is the process of assigning GO terms to gene products. The annotation data in the GO database is contributed by members of the GO Consortium, and the Consortium actively encourages new groups to start contributing annotation. Annotation data is submitted to the GO Consortium in the form of Gene Association Format, or GAFs. This guide lays out the format specifications for GAF 2.0
FAIRsharing.s8g6nh	Non Randomized Controlled Trials Ontology	NonRCTOntology	Non Randomized Controlled Trials Ontology is an ontology to help the systematic review and meta-analysis process of non randomized clinical trials.
FAIRsharing.s8nf87	Quadrupedal Gait	CAMRQ	"Quadrupedal Gait" is a standard that was, until recently, listed on BioPortal. The entry there has now been deleted and we have been unable to find any record of this standard. If you know more, please do not hesitate to contact us.
FAIRsharing.s8vrb1	Apo and Holo structures DataBase	AH-DB	AH-DB (Apo and Holo structures DataBase) collects the apo and holo structure pairs of proteins. Proteins are frequently associated with other molecules to perform their functions. Experimental structures determined in the bound state are named holo structures; while structures determined in the unbound state are named apo structures.
FAIRsharing.sbbbf6	Genome Biology Ontology Language	GBOL	To enable interoperability of genome annotations, we have developed the Genome Biology Ontology Language (GBOL) and associated stack (GBOL stack). GBOL is provenance centered and provides a consistent representation of genome derived automated predictions linked to the dataset-wise and element-wise provenance of predicted elements. GBOL is modular in design, extendible and is integrated with existing ontologies. Interoperability of linked data can only be guaranteed through the application of tools that provide the means for a continuous validation of generated linked data. The GBOL stack enforces consistency within and between the OWL and ShEx definitions. Genome wide large scale functional analyses can then easily be achieved using SPARQL queries. Additionally, modules have been developed to serialize the linked data (RDF) and to generate a plain text format files with integrated support for data provenance that that mimic the indentation structure of GenBank and EMBL formats.
FAIRsharing.sbfp9e	Minimum Information Required for A Glycomics Experiment -  Glycan Microarray Analysis	MIRAGE Glycan Microarray Analysis	MIRAGE (Minimum Information Required for A Glycomics Experiment was created to improve the quality of glycomics data in the scientific literature. These guidelines were drafted to be intentionally minimal and apply only to information required for generating interpretable data from a glycan array experiment. We have identified 8 areas, numbered in the workflow shown below, that are required for generating an unambiguous glycan array in the first instance and obtaining binding data. For each numbered component of the workflow area we provide guidelines for the minimal information that should be provided in reporting results.
FAIRsharing.sbikSF	Duke Research Data Repository	Duke RDR	The Research Data Repository is a service of the Duke University Libraries that provides curation, access, and preservation of research data produced by the Duke community. All data go through a curation process to help ensure data are well described, in a structure and format that supports long-term preservation, and generally meet the FAIR Guiding Principles for data (i.e., Findable, Accessible, Interoperable, and Reusable). All data and documentation are openly accessible for download unless under embargo.
FAIRsharing.sbnhkq	DRSC Functional Genomics Resources	DRSC-FGR	DRSC Functional Genomics Resources (DRSC-FGR) began as the Drosophila RNAi Screening Center (DRSC), founded by Prof. Norbert Perrimon in 2003, and the Transgenic RNAi Project (TRiP), founded by Prof. Perrimon in 2008. DRSC-FGR has been previously known as flyRNAi.org. It has since grown into a functional genomics platform meeting the needs of the Drosophila and broader community.
FAIRsharing.sc3be1	Separation Markup Language	PSI SpML	The HUPO-PSI Protein Separation work group is a collaboration of researchers from academia, industrial partners and software vendors. The group aims to develop reporting requirements that supplement the MIAPE parent document, describing the minimum information that should be reported about gel-based, and non-gel based separation technologies employed for proteins and peptides in proteomics. The group will also develop data formats for capturing MIAPE-compliant data about these technologies and supporting controlled vocabularies.
FAIRsharing.sc7fv9	HIV-1 Human Interaction Database	None	The HIV-1, human protein interaction data presented here are based on literature reports. This dataset is available in report pages per HIV-1 protein and is also integrated into Entrez Gene report pages for HIV-1 and human proteins.
FAIRsharing.scsnja	Signaling Pathway Integrated Knowledge Engine	SPIKE	SPIKE (Signaling Pathway Integrated Knowledge Engine) is an interactive software environment that graphically displays biological signaling networks, allows dynamic layout and navigation through these networks, and enables the superposition of DNA microarray and other functional genomics data on interaction maps.
FAIRsharing.sdjk2h	Metathesaurus CPT Hierarchical Terms	MTHCH	MTHCH is based on information found in the Current Procedural Terminology (CPT) codebook published by the American Medical Association (AMA), as well as on data algorithmically extracted from the CPT files.  MTHCH was created to establish a hierarchy for CPT codes, as well as to represent additional relationships between CPT codes.
FAIRsharing.sDwGp9	MedicMine	MedicMine	MedicMine integrates many types of data for Medicago truncatula. You can run flexible queries, export results and analyse lists of genes.
FAIRsharing.se4zhk	SuperTarget	SuperTarget	Drug-related information: medical indications, adverse drug effects, drug metabolism and Gene Ontology terms of the target proteins.
FAIRsharing.se7ewy	Compendium of Protein Lysine Modifications	CPLM	CPLM (Compendium of Protein Lysine Modifications) is an online data resource specifically designed for protein lysine modifications (PLMs).
FAIRsharing.sec0c9	Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology	RAPID Phenotype Ontology	RAPID phenotype ontology presents controlled vocabulary of ontology class structures and entities of observed phenotypic terms for primary immunodeficiency diseases (PIDs) that facilitate global sharing and free exchange of PID data with users’ communities
FAIRsharing.sed5tq	BAliBASE	BAliBASE	BAliBASE; a benchmark alignment database, including enhancements for repeats, transmembrane sequences and circular permutations.
FAIRsharing.semw9e	CoryneRegNet 6.0 - Corynebacterial Regulation Network	CoryneRegNet	Corynebacterial Regulation Network a reference database and analysis platform for corynebacterial transcription factors and gene regulatory networks.
FAIRsharing.sfkmej	Biological Pathway eXchange	BioPAX	BioPAX is a standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Specifically, BioPAX supports data exchange between pathway data groups and thus reduces the complexity of interchange between data formats by providing an accepted standard format for pathway data. By offering a standard, with well-defined semantics for pathway representation, BioPAX allows pathway databases and software to interact more efficiently. In addition, BioPAX enables the development of pathway visualization from databases and facilitates analysis of experimentally generated data through combination with prior knowledge. The BioPAX effort is coordinated closely with that of other pathway related standards initiatives namely; PSI-MI, SBML, CellML, and SBGN in order to deliver a compatible standard in the areas where they overlap.
FAIRsharing.SFORSe	Sex-Associated Gene Database	SAGD	Many animal species present sex differences. Sex-associated genes (SAGs), which have female-biased or male-biased expression, have major influences on the remarkable sex differences in important traits such as growth, reproduction, disease resistance and behaviors. However, the SAGs resulting in the vast majority of phenotypic sex differences are still unknown. To provide a useful resource for the functional study of SAGs, we manually curated public RNA-seq datasets with paired female and male biological replicates from the same condition and systematically re-analyzed the datasets using standardized methods. We identified 27,793 female-biased SAGs and 64,043 male-biased SAGs from 2,828 samples of 21 species, including human, chimpanzee, macaque, mouse, rat, cow, horse, chicken, zebrafish, seven fly species and five worm species. All these data were cataloged into SAGD, a user-friendly database of SAGs where users can browse SAGs by gene, species, drug, and dataset. In SAGD, the expression, annotation, targeting drugs, homologs, ontology and related RNA-seq datasets of SAGs are provided to help researchers to explore their functions and potential applications in agriculture and human health.
FAIRsharing.SfXDoZ	French Biodiversity (meta)data repository	PNDB	Based on Metacat / Metacatui https://github.com/NCEAS/metacatui and Geoserver technology, This new born repository will act as a national hub for all biodiversity data produced notably by French researchers. Related to the French national Research infrastructure "Pôle national de données de Biodiversité" (PNDB)
FAIRsharing.sFzdV7	Protein Data Bank in Europe - Knowledge Base	PDBe-KB	PDBe-KB (Protein Data Bank in Europe - Knowledge Base) is a community-driven resource managed by the PDBe team, collating functional annotations and predictions for structure data in the PDB archive. PDBe-KB is a collaborative effort between PDBe and a diverse group of bioinformatics resources and research teams. The goal of PDBe-KB is two-fold: (i) to increase the visibility and reduce the fragmentation of annotations contributed by specialist data resources, and to make these data more findable, accessible, interoperable and reusable (FAIR) and (ii) to place macromolecular structure data in their biological context, thus facilitating their use by the broader scientific community in fundamental and applied research.
FAIRsharing.sggb1n	Gene Transfer Format	GTF	The Gene transfer format (GTF) is a file format used to hold information about gene structure. It is a tab-delimited text format based on the general feature format (GFF), but contains some additional conventions specific to gene information. A significant feature of the GTF is that it is validatable: given a sequence and a GTF file, one can check that the format is correct. This significantly reduces problems with the interchange of data between groups.
FAIRsharing.sgk7s0	Ontology of Core Data Mining Entities	OntoDM-core	OntoDM is a generic ontology for the domain of data mining. The ontology includes the information processing processes that occur in the domain of data mining, participants in the processes and their specifications. OntoDM is highly transferable and extendable due to its adherence to accepted standards, and compliance with existing ontology resources. The generality in scope allows wide number of applications of the ontology, such as semantic annotation of data mining scenarios, ontology based support for QSARs, etc.
FAIRsharing.sgqf4n	MapViewer	MapViewer	The Map Viewer is a tool of Entrez Genomes that provides special browsing capabilities for eukaryotic chromosomes. It allows the user to view and search an organisms complete genome, display chromosome maps, and zoom into progressively greater levels of detail, down to the sequence data for a region of interest.
FAIRsharing.shm2f2	Radiology Lexicon	RadLex	RadLex is a comprehensive lexicon—a unified language of radiology terms—for standardized indexing and retrieval of radiology information resources. With more than 68,000 terms, RadLex satisfies the needs of software developers, system vendors and radiology users by adopting the best features of existing terminology systems while producing new terms to fill critical gaps. RadLex also provides a comprehensive and technology-friendly replacement for the ACR Index for Radiological Diagnoses. It unifies and supplements other lexicons and standards, such as SNOMED-CT and DICOM. RadLex development has received support from both the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project.
FAIRsharing.shpqgt	Halocynthia roretzi Anatomy and Development Ontology	HAROREADO	The first ontology describing the anatomy and the development of Halocynthia roretzi.
FAIRsharing.sjk03h	Ontology-based Knowledgebase for Cell Adhesion Molecules	OKCAM	OKCAM (Ontology-based Knowledgebase for Cell Adhesion Molecules) is an online resource for human genes known or predicted to be related to the processes of cell adhesion. These genes include members of the cadherin, immunoglobulin/FibronectinIII (IgFn), integrin, neurexin, neuroligin, and catenin families.
FAIRsharing.sM5t5c	RepetDB	RepetDB	RepetDB provides repeat consensus detected and classified by TEdenovo and used by TEannot to annotate copies in genomes.
FAIRsharing.smqf7y	InterEvol database : Diving into the structure and evolution of protein complex interfaces	None	Evolution of protein-protein Interfaces InterEvol is a resource for researchers to investigate the structural interaction of protein molecules and sequences using a variety of tools and resources.
FAIRsharing.smr0rh	ANSI/NISO Z39.96 JATS: Journal Article Tag Suite	JATS	The Journal Article Tag Suite (JATS) provides a common XML format in which publishers and archives can exchange journal content. The JATS provides a set of XML elements and attributes for describing the textual and graphical content of journal articles as well as some non-article material such as letters, editorials, and book and product reviews. When the Tag Suite was originally released in 2003, it was named NLM Journal Archiving and Interchange Tag Suite. The most recent version is the ANSI/NISO Z39.96-2019 JATS version 1.2.
FAIRsharing.Sn06LV	Sharing and reuse of individual participant data from clinical trials: principles and recommendations	None	This policy provides recommendations for the sharing of and access to individual clinical trial data. It has a focus on non-commercial trials within a European context. The work was part of the Horizon 2020-funded project CORBEL (Coordinated Research Infrastructures Building Enduring Life-science Services) and coordinated by the European Clinical Research Infrastructure Network. The policy is composed of 10 principles and 50 recommendations set within the framework of those principles.
FAIRsharing.sN8d9i	Australian Data Archive	ADA	The Australian Data Archive (ADA) provides a national service for the collection and preservation of digital research data. ADA disseminates this data for secondary analysis by academic researchers and other users. The archive is based in the ANU Centre for Social Research and Methods (CSRM) at the Australian National University (ANU).
FAIRsharing.snAELz	National Space Science Data Center	NSSDC	NSSDC is the nation-level space science center which recognized by the Ministry of Science and Technology of China. As a repository for space science data, NSSDC assumes the responsibility of the long-term stewardship and offering a reliable service of space science data in China. It also has been the Chinese center for space science of the World Data Center (WDC) since 1988. In 2013, NSSDC became a regular member of World Data System. Data resources are concentrated in the following fields of space physics and space environment, space astronomy, lunar and planetary science, space application and engineering. In space physics, the NSSDC maintains space-based observation data and ground-based observation data of the middle and upper atmosphere, ionosphere and earth surface, from Geo-space Double Star Exploration Program and Meridian Project. In space astronomy, NSSDC archived pointed observation data of Hard X-ray Modulation Telescope. In lunar and planetary science, space application and engineering, NSSDC also collects detection data of Chang’E from Lunar Exploration Program and science products of BeiDou satellites.
FAIRsharing.sncr74	Syntheses, Chemicals, and Reactions In Patents DataBase	SCRIPDB	SCRIPDB is a chemical structure database designed to make patent metadata accessible. We index public-domain chemical information contained in U.S. patents, and provide the full patent text, reactions, and relationships described within any individual patent, as well as the original CDX, MOL, and TIFF files.
FAIRsharing.snnfj7	Pig Genomic Informatics System	PigGIS	The Pig Genomic Informatics System (PigGIS) presents accurate pig gene annotations in all sequenced genomic regions. It integrates various available pig sequence data, including 3.84 million whole-genome-shortgun (WGS) reads and 0.7 million Expressed Sequence Tags (ESTs) generated by Sino-Danish Pig Genome Project, and 1 million miscellaneous GenBank records.
FAIRsharing.SnTbUa	MAR databases	MAR	The MAR databases is a collection of manually curated marine microbial contextual and sequence databases, based at the Marine Metagenomics Portal. This was developed as a part of the ELIXIR EXCELERATE project in 2017 and is maintained by The Center for Bioinformatics (SfB) at the UiT The Arctic University of Norway. SfB is hosting the UiT node of ELIXIR Norway. The MarRef, MarDb, MarFun and MarCat contextual databases are built by compiling data from a number of public available sequence, taxonomy and literature databases in a semi-automatic fashion.
FAIRsharing.sp7hvb	Proteomics data and process provenance	ProPreO	A comprehensive proteomics data and process provenance ontology.
FAIRsharing.spjjv8	Functional Therapeutic Chemical Classification System	FTC	The Functional Therapeutic Chemical Classification System (FTC) defines over 20,000 mechanisms and modes of action for approved drugs. The resource abstracts away from the traditional chemical structure-based approach and focuses solely on the mode of action of drugs. The classification sorts therapeutic agents based on their function in the human body. Please note that this resource is no longer actively maintained (source: https://github.com/loopasam/ftc/issues/1).
FAIRsharing.spxmc4	ProPortal	ProPortal	ProPortal is a database containing genomic, metagenomic, transcriptomic and field data for the marine cyanobacterium Prochlorococcus. They provide a source of cross-referenced data across multiple scales of biological organization—from the genome to the ecosystem—embracing the full diversity of ecotypic variation within this microbial taxon, its sister group, Synechococcus and phages that infect them.
FAIRsharing.srgkaf	Hardwood Genomics Project	HWG	The Hardwood Genomics Project is a databases for expressed genes, genetic markers, genetic linkage maps, and reference populations. It provides lasting genomic and biological resources for the discovery and conservation of genes in hardwood trees for growth, adaptation and responses to environmental stresses such as drought, heat, insect pests and disease. All original sequence data is being deposited in NCBI's Sequence Read Archive and the genetic linkage maps and associated marker data will be available at the Dendrome database.
FAIRsharing.SrP8P7	Dynamic Ecological Information Management System - Site and Dataset Registry	DEIMS-SDR	DEIMS-SDR (Dynamic Ecological Information Management System - Site and Dataset Registry) is an information management system for the discovery of long-term environmental research and monitoring facilities around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR includes metadata such as site location, ecosystem, facilities, parameters measured and research themes.
FAIRsharing.SrUPH3	Policy for Quality Control Metrics for Resources	None	As IDG members may share their resources via different mechanisms (see Policy for Resource Sharing by IDG Members), the IDG Consortium expects that these resources comply with the quality control metrics listed on https://druggablegenome.net/QC_Metrics
FAIRsharing.ssx7a2	Comparative Fungal Genomics Platform	CFGP	The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with diverse fungal genomes.
FAIRsharing.sszk3y	Robert Hoehndorf's Version of MeSH	RH-MeSH	A modified version of the Medical Subjects Headings Thesaurus (MeSH) 2014. This is an OWL representation of MeSH so that it can be integrated with other ontologies represented in OWL. It contains all terms that are in MeSH and in the MeSH concept tree, including the pharmacological actions (represented as subclass relations). Concepts in the MeSH concept tree are merged with MeSH term ids. Note that, while this ontology is composed of MeSH terms, it does not correspond directly to UMLS MeSH. In particular, a single term in UMLS MeSH often results in multiple classes in this ontology.
FAIRsharing.st5f80	National Academy of Sciences - Proceedings of the National Academy of Sciences - Editorial Policies	None	As a publisher, PNAS must be able to archive the data essential to a published article. Where such archiving is not possible, deposition of data in public databases, such as GenBank, ArrayExpress, Protein Data Bank, Unidata, and others is acceptable. Only links to websites that are permanent public repositories, such as self-perpetuating online resources funded by government, academia, and industry, are permitted. To allow others to replicate and build on work published in PNAS, authors must make materials, data, and associated protocols, including code and scripts, available to readers. Authors must disclose upon submission of the manuscript any restrictions on the availability of materials or information. Before publication, authors must deposit large datasets (including microarray data, protein or nucleic acid sequences, and atomic coordinates for macromolecular structures) in an approved database and provide an accession number for inclusion in the published paper.
FAIRsharing.str8m4	Cigarette Smoke Exposure Ontology	CSEO	The Cigarette Smoke Exposure Ontology (CSEO) is a specialized ontology of environmental exposure with particular focus on the description of the experimental elements and the impact that environmental exposure, e.g. cigarette smoke, poses to biological systems. The scope of CSEO is centered on the following elements: Exposure experiment, Exposure condition, Test system, Sampling, and Disease outcome.
FAIRsharing.stYji6	IDG Antibody Resource Reporting Standards	None	Primary and secondary antibody resource reporting standards for the Illuminating the Druggable Genome (IDG) consortium.
FAIRsharing.SUv0eF	SECURE-Sickle Cell Disease Registry	Secure-SCD Registry	This registry is designed to capture pediatric and adult COVID-19 cases that are occurring across the world in patients living with sickle cell disease. The goal of the registry is to report on outcomes of cases of COVID-19 in this population of patients.
FAIRsharing.sv2rm8	TissueNet v.2	TissueNet	Knowledge of the molecular interactions of human proteins within tissues is important for identifying their tissue-specific roles and for shedding light on tissue phenotypes. However, many protein-protein interactions (PPIs) have no tissue-contexts. The TissueNet database bridges this gap by associating experimentally-identified PPIs with human tissues that were shown to express both pair-mates. Users can select a protein and a tissue, and obtain a network view of the query protein and its tissue-associated PPIs. TissueNet v.2 is an updated version of the TissueNet database previously featured in NAR. It includes over 40 human tissues profiled via RNA-sequencing or protein-based assays. Users can select their preferred expression data source and interactively set the expression threshold for determining tissue-association. The output of TissueNet v.2 underlines qualitative and quantitative features of query proteins and their PPIs. The tissue-specificity view highlights tissue-specific and globally-expressed proteins, and the quantitative view highlights proteins that were differentially expressed in the selected tissue relative to all other tissues. Together, these views allow users to quickly assess the unique versus global functionality of query proteins. Thus, TissueNet v.2 offers an extensive, quantitative and user-friendly interface to study the roles of human proteins across tissues.
FAIRsharing.svkzq3	Non-Redundant B.subtilis database	NRSub	This server allows to access the complete genome of Bacillus subtilis. Additional data on gene mapping and codon usage have been added, as well as cross-references with the SWISS-PROT, ENZYME and HOBACGEN databases.
FAIRsharing.SvsBRM	Let's Get Healthy! STEM Beliefs	LGH STEM	Let's Get Healthy! is a NIH-funded program that conducts health fairs. Students' beliefs about their STEM abilities in the context of impulsivity and mindset are described in a three state sample of secondary students across Oregon, Washington, and California.
FAIRsharing.svzbnp	DEscription Language for TAxonomy	DELTA	When taxonomic descriptions are prepared for input to computer programs, the form of the coding is usually dictated by the requirements of a particular program or set of programs. This restricts the type of data that can be represented, and the number of other programs that can use the data. Even when working with a particular program, it is frequently necessary to set up different versions of the same basic data, for example, when using restricted sets of taxa or characters to make special-purpose keys. The potential advantages of automation, especially in connexion with large groups, cannot be realized if the data have to be restructured by hand for every operation. The DELTA (DEscription Language for TAxonomy) system was developed to overcome these problems. It was designed primarily for easy use by people rather than for convenience in computer programming, and is versatile enough to replace the written description as the primary means of recording data. Consequently, it can be used as a shorthand method of recording data, even if computer processing of the data is not envisaged.
FAIRsharing.sw9xbj	Expressed Sequence Annotation for Humans	eVOC	Expressed Sequence Annotation for Humans provides structured controlled vocabularies for the annotation of expressed sequences with respect to anatomical system, cell type, developmental stage, experimental technique, microarray platform, pathology, pooling, tissue preparation and treatment. This record is no longer being maintained.
FAIRsharing.SWMYY2	Scholars' Mine	Scholars' Mine	Scholars' Mine is an online collection of scholarly and creative works produced by the faculty, staff, and students of the Missouri University of Science and Technology. This digital repository is a service of Missouri S&T Library and Learning Resources.
FAIRsharing.sxh2dp	HUPO PSI Mass Spectrometry Controlled Vocabulary	PSI-MS CV	The PSI-MS Controlled Vocabulary is developed in common with the PSI-Proteomics Informatics group. It consists of a large collection of structured terms covering description and use of Mass Spectrometry instrumentation as well as Protein Identification and Quantitation software. The source of the terms are multiple: they include vocabulary and definitions in chapter 12 of the IUPAC nomenclature book, instrument and software vendors and developers and other user-submitted terms. Although its structure and use is linked to mzML, mzIdentML and mzQuantML, it is dynamically maintained in a OBO format. The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS–related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance. Owing to the range of topics covered by the CV, collaborative development across several PSI working groups, including proteomics research groups, instrument manufacturers and software vendors, was necessary.
FAIRsharing.syayhh	E. coli K antigen 3-dimensional structure database	EK3D	EK3D - an E. coli K antigen 3-dimensional structure database is a repository of 72 E. coli K antigens that provides information about the sugar composition, epimeric & enantiomeric forms and linkages between the sugar monomers.
FAIRsharing.szexty	insectH	INSECTH	NeuroMorpho.Org insect brain regions ontology is compiled to create data annotation standard for depositing insect data. Currently at v6.2, NeuroMorpho.Org hosts over 17k neuronal reconstructions mostly from the fly. The insect ontology follows the standard nomenclature of the insect brain (Ito et al., 2013) and the virtualfly.org.
FAIRsharing.szgagY	Data.CDC.gov	Data.CDC.gov	Data.CDC.gov hosts data sets published by the Centers for Disease Control and Prevention on public health topics.
FAIRsharing.szj2xw	Health and Medical Care Archive	HMCA	The Health and Medical Care Archive (HMCA) is the data archive of the Robert Wood Johnson Foundation (RWJF), the largest philanthropy devoted exclusively to health and health care in the United States. Operated by the Inter-university Consortium for Political and Social Research (ICPSR) at the University of Michigan with funding from RWJF, HMCA preserves and disseminates data collected by selected research projects funded by RWJF and facilitates secondary analyses of the data. The data collections in HMCA primarily includes large-scale surveys of the American public about public health, attitudes towards health reform, and access to medical care; surveys of health care professionals and organizations, public health professionals, and nurses; evaluations of innovative programs for the delivery of health care, and many other topics and populations of interest. Our goal is to build a culture of health by increasing the understanding of health and health care and the factors that contribute to health in the United States through secondary analysis of RWJF-supported data collections.
FAIRsharing.szrmev	CDISC Controlled Terminology	CDISC CT	CDISC Controlled Terminology is the set of codelists and valid values used with data items within CDISC-defined datasets. Controlled Terminology provides the values required for submission to FDA and PMDA in CDISC-compliant datasets. Controlled Terminology does not tell you WHAT to collect; it tells you IF you collected a particular data item, how you should submit it in your electronic dataset.
FAIRsharing.szs7pn	MetaNetX	MNXref	MetaNetX/MNXref is a database for reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. The tools developed at MetaNetX are useful for accessing, analysing and manipulating metabolic networks. MetaNetX goal is to automate model construction and genome annotation for large-scale metabolic networks.
FAIRsharing.t05h3c	LINCS Extended Metadata Standard: Induced Pluripotent Stem Cells	LINCS 2: iPSCs	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project. Induced pluripotent stem cells (iPSCs) are adult cells that have been genetically reprogrammed to an embryonic stem cell–like state by being forced to express genes and factors important for maintaining the defining properties of embryonic stem cells.
FAIRsharing.t1tvm9	Australian Antarctic Data Centre	AADC	The AADC manages science data from Australia's Antarctic research, maps Australia's areas of interest in the Antarctic region, manages Australia's Antarctic state of the environment reporting, and provides advice and education and a range of other products.provide long-term management of Australia's Antarctic data, thereby improving the value and impact of our scientific activities. The Data Centre is committed to the free and open exchange of scientific data, consistent with the Antarctic Treaty's position that "to the greatest extent feasible and practicable scientific observations and results from Antarctica shall be exchanged and made freely available".
FAIRsharing.t2e1ss	Harvard Dataverse	Harvard Dataverse	Harvard Dataverse is a research data repository running on the open source web application Dataverse. Harvard Dataverse is fully open to the public, and allows upload and browsing of data from all fields of research, and is free for all researchers worldwide (up to 1 TB). Links to related grants, authors, software and research products are provided. Harvard Dataverse supports managed access (with an access request workflow) as well as embargoing generally and during peer review. Dataverse allows users to share, preserve, cite, explore, and analyse research data. It facilitates making data available to others, and allows you to replicate others' work more easily. Researchers, data authors, publishers, data distributors, and affiliated institutions all receive academic credit and web visibility. The Harvard Database receives support from Harvard University, public and private grants, and an emergent consortium model.
FAIRsharing.t2exm	PLOS Recommended Data Repositories	PLOS Recommended Repositories	A list of the biological repositories and standards recommended by the PLOS publishing group journals PLOS Biology, PLOS Medicine, PLOS ONE, PLOS Genetics, PLOS Pathogens, PLOS Computational Biology, and PLOS Neglected Tropical Diseases.
FAIRsharing.t43bf6	UK Polar Data Centre Data Archive	UK PDC	The UK Polar Data Centre (UK PDC) is the Natural Environment Research Council's (NERC) Designated Data Centre for polar science. It is the focal point for Arctic and Antarctic environmental data management in the UK.
FAIRsharing.t4be96	Wiley-Blackwell - Ecology Letters - Information for Authors	None	Ecology Letters is a forum for the very rapid publication of the most novel research in ecology. This document outlines guidance for authors, providing information on submission and manuscript specifications for the different types of articles published by the journal.
FAIRsharing.t4nd3r	LINCS Extended Metadata Standard: Cell lines	LINCS 2: Cell lines	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project. To describe cell lines, they incorporated some of the elements proposed in MIACA. The underlying theme among all cell types is their association with a tissue or organ from which the cells were derived. In many cases (especially with cell lines), the cells are also associated with a disease.
FAIRsharing.t4vtpa	American Chemical Society - Chemical Reviews - Information for Authors	ACS - CR Policy	This document outlines information for authors to support manuscript preparation and submission criteria.
FAIRsharing.t58zhj	Animals in Research: Reporting In Vivo Experiments	ARRIVE	The ARRIVE (Animal Research: Reporting In Vivo Experiments) guidelines are intended to improve the reporting of research using animals - maximising information published and minimising unnecessary studies. The ARRIVE guidelines were developed in consultation with the scientific community as part of an NC3Rs initiative to improve the standard of reporting of research using animals. They are available in Chinese (Mandarin), French, Italian, Japanese, Korean, Portuguese (including Brazilian Portuguese) and Spanish as well as the original English.
FAIRsharing.t5ha5j	Cell Centered Database	CCDB	The Cell Centered Database (CCDB) is a web accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging.
FAIRsharing.t6wjn7	probeBase	probeBase	probeBase is a manually maintained and curated database of rRNA-targeted oligonucleotide probes and primers. Contextual information and multiple options for evaluating in silico hybridization performance against the most recent rRNA sequence databases are provided for each oligonucleotide entry, which makes probeBase an important and frequently used resource for microbiology research and diagnostics. The major features of probeBase include a classification of probes and primers according to the NCBI taxonomy database, a powerful and customizable search function, which serves to query for target organisms, probe names, primers, target sites, and references. The probeBase match tool can be used to match near-full length rRNA sequences against probeBase and find all published probes targeting the query sequences. The new proxy match tool extends this analysis to partial rRNA sequences, which exploits full-length sequences in the rRNA sequence database SILVA to find published probes potentially targeting partial query sequences. A tool for submitting new or missing probe sequences or references helps to keep probeBase up-to-date.
FAIRsharing.t6y94s	OntoFood	OF	This is an ontology with SWRL rules of nutrition for diabetic patient. We can import the value of Blood Sugar and Weight by .xls and use that like instance for generate the rules with rule engine Jess.
FAIRsharing.t7mby9	ISO 19115-1:2014 Geographic information -- Metadata -- Part 1: Fundamentals	ISO 19115-1:2014	ISO 19115-1:2014 defines the schema required for describing geographic information and services by means of metadata. It provides information about the identification, the extent, the quality, the spatial and temporal aspects, the content, the spatial reference, the portrayal, distribution, and other properties of digital geographic data and services.
FAIRsharing.t7yckc	Pharmacogenomics Knowledge Base	PharmGKB	PharmGKB curates primary genotype and phenotype data, annotates gene variants and gene-drug-disease relationships via literature review, and summarizes important PGx genes and drug pathways. PharmGKB collects, curates and disseminates knowledge about the impact of human genetic variation on drug responses.
FAIRsharing.t80940	SiB Colombia IPT - GBIF Colombia Repository	None	The Colombian Biodiversity Information System (SiB Colombia) maintains this data repository, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Able to assign DOIs to datasets, it ensures the data is disseminated in standardized format in order to facilitate wider reuse and integration of the data, for example into GBIF.org. SiB Colombia supports researchers in Colombia by providing them helpdesk assistance and by hosting their data for free in this repository.
FAIRsharing.t8g7yc	Minimum Information About an RNAi Experiment Tabular	MIARE-TAB	Minimum Information About an RNAi Experiment Tabular (MIARE) is a set of reporting guidelines that describes the minimum information that should be reported about an RNAi experiment to enable the unambiguous interpretation and reproduction of the results. MIARE forms part of a larger effort to develop RNAi data standards that include a data model, data exchange format, controlled vocabulary and supporting software tools.
FAIRsharing.t955dp	Read Codes Clinical Terms Version 3	CTV3	Read Codes are a coded thesaurus of clinical terms. They have been used in the NHS since 1985. There are two versions: version 2 (v2) and version 3 (CTV3 or v3). Both versions provide a standard vocabulary for clinicians to record patient findings and procedures, in health and social care IT systems across primary and secondary care. The Read Codes were developed in 1985 by Dr. James Read. The U.K. National Health Service Centre for Coding and Classification (NHS CCC) acquired and now maintains the Read Codes. Read Codes contain hundreds of thousands of terms, synonyms, and abbreviations covering all aspects of patient care including signs and symptoms, treatments and therapies, investigations, occupations, diagnoses, and drugs and appliances. Read Codes are used by healthcare professionals in computerized information systems. Read Codes are now known as Clinical Terms. Clinical Terms Version 3 (CTV3) has been merged with the Systematized Nomenclature of Medicine – Reference Terminology (SNOMED RT), resulting in the creation of SNOMED – Clinical Terms (SNOMED CT). PLEASE NOTE: the retirement of Read v2 and v3 (CTV3) clinical terminologies has been scheduled. The last release of Read v2 was April 2016, with CTV3 due to be retired after the April 2018 release. Organisations should be well underway with their preparations to ensure they can use the dictionary of medicines and devices (dm+d) for medicines and SNOMED CT for clinical content. SNOMED CT is adopted across primary care and the wider NHS.
FAIRsharing.t98nav	Gemma	Gemma	Gemma is a database for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles. Gemma contains data from thousands of public studies, referencing thousands of published papers. Users can search, access and visualize co-expression and differential expression results.
FAIRsharing.tamp4p	Parkinson's Progression Markers Initiative	PPMI	PPMI is an observational clinical study to verify progression markers in Parkinson’s disease. The study is designed to establish a comprehensive set of clinical, imaging and biosample data that will be used to define biomarkers of PD progression. Once these biomarkers are defined, they can be used in therapeutic studies. The clinical, imaging and biologic data are accessible to researchers in real time through the website.
FAIRsharing.Tb0BKn	Science Data Bank	ScienceDB	ScienceDB (Science Data Bank) is an open generalist data repository developed and maintained by the CNIC. It promotes the publication and reuse of scientific data. Researchers and journal publishers can use it to store, manage and share science data.
FAIRsharing.tb6w4b	Cell Phenotype Ontology	CPO	The CPO is an ontology of morphological and physiological phenotypic characteristics of cells, cell components and cellular processes. Its prime application is to provide terms and uniform definition patterns for the annotation of cellular phenotypes. The CPO can be used for the annotation of observed abnormalities in domains, such as systems microscopy, in which cellular abnormalities are observed and for which no phenotype ontology has been created.
FAIRsharing.tbep2b	Physical Medicine and Rehabilitation	PhyMeRe	Knowledge representation related to computer-based decision support in rehabilitation; concepts and relationships in the rehabilitation domain, integrating clinical practice, the ICD (specifically its 11th revision), the clinical investigator record ontology, the ICF and SNOMED CT.
FAIRsharing.tber4e	Human Integrated Pathway Database	hiPathDB	Human Integrated Pathway Database (hiPathDB) provides two different types of integration. The pathway-level integration is a simple collection of individual pathways as described in the original database. The entity-level integration creates a super pathway that merged all pathways by unifying redundant components.
FAIRsharing.tbkzda	SURFACE	SURFACE	SURFACE is a database containing the results of a large-scale protein annotation and local structural comparison project. The homepage of the resource has not been updated since 2003 (and the maintainer's website since 2010). Until we have confirmation of the status of this project, we have classified it as uncertain.
FAIRsharing.tby3x7	Arabidopsis Thaliana Trans-factor and cis-Element prediction Database	ATTED-II	ATTED-II is a coexpression database for plant species with parallel views of multiple coexpression data sets and network analysis tools. The user can find functional gene relationships and design experiments to identify gene functions by reverse genetics and general molecular biology techniques.
FAIRsharing.tc2jbF	Optics terminology resource	None	Terminology resource used for indexing bibliographical records dealing with “Optics” in the PASCAL database, until 2014. It consists of 3177 entries in 4 languages (English, French, Spanish and German).
FAIRsharing.tcbwad	HIV ontology	HIV	The HIV ontology encompasses all knowledge about HIV
FAIRsharing.tdhkc6	Genome Sequence Archive	GSA	GSA is a data repository specialized for archiving raw sequence reads. It supports data generated from a variety of sequencing platforms ranging from Sanger sequencing machines to single-cell sequencing machines and provides data storing and sharing services free of charge for worldwide scientific communities. In addition to raw sequencing data, GSA also accommodates secondary analyzed files in acceptable formats (like BAM, VCF). Its user-friendly web interfaces simplify data entry and submitted data are roughly organized as two parts, viz., Metadata and File, where the former can be further assorted into BioProject, BioSample, Experiment and Run, and the latter contains raw sequence reads.
FAIRsharing.tej5wx	New Hampshire eXtended Format	None	NHX is based on the New Hampshire (NH) standard (also called "Newick tree format").
FAIRsharing.tepvv5	FOODIE core ontology	FOODIE	The FOODIE project is focused on building an open and interoperable agricultural specialized platform on the cloud for the management, discovery and large-scale integration of data relevant for farming production. The FOODIE ontology is an INSPIRE-based vocabulary for the publication of Agricultural Linked Data. The ontology provides a semantic representation of the FOODIE core data model, which was specified in UML by extending and specializing the INSPIRE data model for Agricultural and Aquaculture Facilities (AF), which is in turn based on the ISO/OGC standards for geographical information.
FAIRsharing.tf3mhc	Virtual Parts Repository	VPR	The Virtual Parts Repository (VPR) is a repository of reusable, modular and composable models of biological parts.
FAIRsharing.tf6kj8	Reactome		The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 15 non-human species including mouse, rat, chicken, zebrafish, worm, fly, and yeast.
FAIRsharing.TFhZ4P	RatMine	RatMine	RatMine integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms. You can run flexible queries, export results and analyse lists of data.
FAIRsharing.tfj7gt	EPA Comptox Chemicals Dashboard	None	The foundation of chemical safety testing relies on chemistry information such as high-quality chemical structures and physical chemical properties. This information is used by scientists to predict the potential health risks of chemicals. The Dashboard is part of a suite of dashboards developed by EPA to help evaluate the safety of chemicals. It provides access to a variety of information on over 700,000 chemicals currently in use. Within the Dashboard, users can access chemical structures, experimental and predicted physicochemical and toxicity data, and additional links to relevant websites and applications. It maps curated physicochemical property data associated with chemical substances to their corresponding chemical structures. These data are compiled from sources including the EPA’s computational toxicology research databases, and public domain databases such as the National Center for Biotechnology Information’s PubChem database.
FAIRsharing.tfvd5r	Glycosciences.de DB	None	Glycan database with focus on carbohydrate 3D structures
FAIRsharing.tghhc4	Pipeline Patterns Ontology	PP	To answer the need for a workflow representing a sequence of data transformations, a high-level process ontology was defined, denoted Pipeline Patterns (PP) ontology.  Every concept is generically a Data (class from EDAM), which can be further specified as an Entry (P:00002) or an Exit (P:00009). All Entries can be subjected to an Operation (class from EDAM) producing an Intermediate (P:00010). An Intermediate has a TemporalEntity associated to represent its time of creation. Some Entries are specifically of the type Exit, meaning that they will represent concepts that exit the current category and be passed to the next one on the workflow. Additionally, in order to permit the treatment of a set of objects as a single entity, this high-level ontology considers the concept of List (P:00004) and more specifically an Aggregate (P:00005), containing a set of Data or Entry, respectively. The concept Intermediate is an Entry, allowing for the successive application of an operation to an Element. This is particularly useful in the case of the application of sequential set of operations.
FAIRsharing.tgjsm4	bNAber	bNAber	Discovery of Broadly Neutralizing Antibodies (bNAbs) has given a great boost to HIV vaccine research. Study of bNAbs capable of neutralizing a broad array of different HIV strains is important for a number of reasons: (i) structures of antigens co-crystallized with bNAbs are used as templates in HIV vaccine design; (ii) bNAbs can be effective as therapeutics; (iii) preventive use of bNAbs is a promising direction in AIDS care. The goal of bNAber is to collect, analyze, compare and present bNAbs data, thus helping researchers to create HIV vaccine.
FAIRsharing.th72sy	IBP Wheat Plant Anatomy and Development Ontology	CO_121	The IBP Wheat Plant Anatomy and Development Ontology defines growth stages of wheat and is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information. Although this ontology seems to have a stable status on its homepage, it is listed as Retired in AgroPortal. Therefore we have marked its record status as Uncertain. Please get in touch if you have information regarding the current status of this resource.
FAIRsharing.thskvr	Code Ocean	CO	Code Ocean is a cloud-based computational reproducibility platform that provides researchers and developers an easy way to share, discover and run code published in academic journals and conferences. The platform provides open access to the published software code and data to view and download for everyone for free. Users can execute all published code without installing anything on their personal computer. Everything runs in the cloud on CPUs or GPUs according to the user needs.
FAIRsharing.tIqykQ	Global Collaboration Engine	GLOBE	GLOBE (Global Collaboration Engine) is an online collaborative environment that enables land change researchers to share, compare and integrate local and regional studies with global data to assess the global relevance of their work.
FAIRsharing.tj9xv0	NERC British Oceanographic Data Centre Data Archive	BODC	BODC makes available biological, chemical, physical and geophysical data on the marine environment.
FAIRsharing.tje0nv	The ITHANET Portal	ITHANET	The ITHANET Portal represents an expanding resource for clinicians and researchers dealing with haemoglobinopathies and a port of call for patients in search of professional advice. The ITHANET Portal integrates information on news, events, clinical trials and thalassaemia-related organisations, research projects and other scientific networks, wiki-based content of protocols, clinical guidelines and educational articles. Most importantly, disease-specific databases are developed and maintained on the ITHANET Portal, such as databases of haemoglobin variations (IthaGenes), epidemiology (IthaMaps) and HbF inducers (IthaDrugs).
FAIRsharing.tjf1jg	NIH 3D Print Exchange	None	Few scientific 3D-printable models are available online, and the expertise required to generate and validate such models remains a barrier. The NIH 3D Print Exchange eliminates this gap with an open, comprehensive, and interactive website for searching, browsing, downloading, and sharing biomedical 3D print files, modeling tutorials, and educational material. The NIH 3D Print Exchange is a collaborative effort led by the National Institute of Allergy and Infectious Diseases in collaboration with the Eunice Kennedy Shriver National Institute for Child Health and Human Development and the National Library of Medicine.
FAIRsharing.Tk7tqj	ChemTHEATRE	ChemTHEATRE	ChemTHEATRE is an online resource for browsing and analyzing curated and user-contributed data sets of environmental contaminants. ChemTHEATRE also stores metadata of the samples and of the experimental methods.
FAIRsharing.tlbUpj	Materials Cloud	Materials Cloud	The Materials Cloud Archive provides FAIR & long-term storage of research data from computational materials science, with particular focus on sharing the full provenance of calculations.
FAIRsharing.tn11nn	RIKEN Bioresource Research Center	RIKEN BRC	RIKEN BRC collects, preserves and distributes five important bioresources: experimental mouse strains, Arabidopsis thaliana and other laboratory plants, cultured cell lines of human and animal origin, microorganisms, genetic materials of human, animal and microbe origin.
FAIRsharing.tn7et	FlyGlycoDB Ontology	None	The glycobiology of Drosophila has been extensively studied in recent years, and much information has accumulated regarding glycan-related genes and proteins in Drosophila. The FlyGlycoDB ontology describes glycogenes of Drosophila and includes mutants, activity, references and links to FlyBase and UniProt. It is part of the FlyGlycoDB database.
FAIRsharing.tn873z	INSD sequence record XML	INSDSeq	The International Nucleotide Sequence Database Collaboration (INSDC) is a long-standing foundational initiative that operates between DDBJ, EMBL-EBI and NCBI. INSDC covers the spectrum of data raw reads, though alignments and assemblies to functional annotation, enriched with contextual information relating to samples and experimental configurations. The INSDSeq is the official supported XML format of the International Nucleotide Sequence Database Collaboration (INSDC). The current production version of the XML is INSDSeq v1.5.
FAIRsharing.tnByoG	ClinicalStudyDataRequest.com	CSDR	ClinicalStudyDataRequest.com (CSDR) is a consortium of clinical study Sponsors/Funders. It is a leader in the data sharing community inspired to drive scientific innovation and improve medical care by facilitating access to patient-level data from clinical studies. CSDR seeks to be the researcher-preferred and trusted platform for responsible sharing of high quality patient-level data for the purpose of facilitating innovative data-driven research leading to improvements in patient care. This will be accomplished through the facilitation of the responsible sharing of patient-level data from a range of clinical study Sponsors/Funders through a researcher-friendly platform, utilizing industry leading practices, including an independent review of proposals and protection of patient privacy and confidentiality.
FAIRsharing.tNQAlF	LSHTM Research Online	None	LSHTM Research Online is a freely accessible open access repository of research conducted by staff from the London School of Hygiene & Tropical Medicine.
FAIRsharing.tnu8V7	Data Quality Vocabulary	DQV	Aiming to facilitate the publication of such data quality information on the Web, especially in the growing area of data catalogues, the W3C Data Web Best Practices Working (DWBP) group has developed the Data Quality Vocabulary (DQV). DQV is a (meta)data model implemented as an RDF vocabulary with properties and classes suitable for expressing the quality of datasets and their distributions. DQV has been conceived as a high-level, interoperable framework that must accommodate various views over data quality. DQV does not seek to determine what "quality" means. Quality lies in the eye of the beholder; and there is no objective, ideal definition of it. Some datasets will be judged as low-quality resources by some data consumers, while they will perfectly fit others' needs. There are heuristics designed to fit specific assessment situations that rely on quality indicators, such as pieces of data content, pieces of data meta-information and human ratings, to give indications about the suitability of data for some intended use. DQV re-uses the notions of quality dimensions, categories and metrics to represent various approaches to data quality assessments. It also stresses the importance of allowing different actors to assess the quality of datasets and publish their annotations, certificates, or mere opinions about a dataset.
FAIRsharing.toIDed	BioDare2 - Biological Data Repository	BioDare2	BioDare2 is a repository for circadian, biological data, providing a platform for data sharing and period analysis. The main features of BioDare2 are: fast period analysis, timeseries processing, attractive visualizations, simple data description and modern UI, all of it to assure the best user experience.
FAIRsharing.tp9z4q	ArchDB	ArchDB	ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.
FAIRsharing.tpey2t	Online Mendelian Inheritance in Animals	OMIA	Online Mendelian Inheritance in Animals is a a database of inherited disorders, other (single-locus) traits, and genes in animal species (other than human and mouse).
FAIRsharing.tpqndj	Model Archive	Model Archive	The Model Archive provides a stable archive for computational macro-molecular models published in the scientific literature. The model archive provides a unique stable accession code (DOI) for each deposited model, which can be directly referenced in the corresponding manuscripts.
FAIRsharing.TrcBD2	Chemistry vocabulary	None	Controlled vocabulary used for indexing bibliographical records dealing with chemistry in the PASCAL database (1972-2015). It is aligned with the terms of the ChEBI (Chemical Entities of Biological Interest), RXNO (name reaction ontology), MOP (molecular process ontology), REX (Physico-chemical process), FIX (Physico-chemical methods and properties), ontologies and the terms of the IUPAC Gold Book. This resource contains 9150 entries in 2 languages (English and French) grouped under 21 collections.
FAIRsharing.TS3gpY	CodeMeta	CodeMeta	CodeMeta contributors are creating a minimal metadata schema for science software and code, in JSON and XML. The goal of CodeMeta is to create a concept vocabulary that can be used to standardize the exchange of software metadata across repositories and organizations.
FAIRsharing.ts6zgq	NCCN EHR Oncology Categories	NCCNEHR	The NCCN EHR Oncology Advisory Group was formed to address the high variance in oncology history documentation within EHR systems. Specifically, there is a lack of standardization in the names of oncology history categories across institutions. Moreover, no synonym list or mapping currently exists between the varied category names. Furthermore, oncology history documentation is often inconsistent, incomplete, and not updated appropriately. The NCCN EHR Oncology Advisory Group has established best practices and is working with EHR vendors to implement and enhance tools for documentation of oncology history. This ontology is a result of the work of the group, and provides users with a list of oncology history categories and synonyms. It is our sincere hope that this work can form the basis of improving standardization and interoperability of oncology history documentation within EHR systems.
FAIRsharing.tsp58	Elsevier - Current Opinion in Cell Biology - Guide for Authors	None	The Information for Authors page contains a broad range of guidelines for publishing in Current Opinion in Cell Biology. The Current Opinion journals were developed out of the recognition that it is increasingly difficult for specialists to keep up to date with the expanding volume of information published in their subject. Elsevier encourages authors to connect articles with external databases, giving readers access to relevant databases that help to build a better understanding of the described research.
FAIRsharing.TUq8Zj	FAIR Metrics - Identifier Persistence	FM-F1B	The FM-F1B Metric provides information regarding whether or not there is a policy that describes what the provider will do in the event an identifier scheme becomes deprecated. The change to an identifier scheme will have widespread implications for resource lookup, linking, and data sharing. Providers of digital resources must ensure that they have a policy to manage changes in their identifier scheme, with a specific emphasis on maintaining/redirecting previously generated identifiers. This metric applies to part F1 of the FAIR Principles.
FAIRsharing.tv1yg0	Reporting guidElines For randomized controLled trials for livEstoCk and food safeTy	REFLECT	REFLECT stands for Reporting guidElines For randomized controLled trials for livEstoCk and food safeTy. It is an evidence-based minimum set of items for trials reporting production, health, and food-safety outcomes.The aim of the REFLECT Statement is to help authors improve the reporting livestock trials with production, health, and food-safety outcomes. The REFLECT Statement consists of a 22-item checklist. It is an evolving document that is subject to change periodically as new evidence emerges.
FAIRsharing.tv6fxt	PMut Data Repository	PMutData	PMut Data Repository collects predictions of the pathological effect of all possible single amino acid variants on Uniref Human protein sequences. Predictions were prepared using PMut 2017 predictor (2017 version).
FAIRsharing.TVImPv	VODataService: a VOResource Schema Extension for Describing Collections and Services	VODataService	VODataService refers to an XML encoding standard for a specialized extension of the IVOA Resource Metadata that is useful for describing data collections and the services that access them. It is defined as an extension of the core resource metadata encoding standard known as VOResource using XML Schema. The specialized resource types defined by the VODataService schema allow one to describe how the data underlying the resource cover the sky as well as cover frequency and time. This coverage description leverages heavily the Space-Time Coordinates (STC) standard schema. VODataService also enables detailed descriptions of tables that includes information useful to the discovery of tabular data. It is intended that the VODataService data types will be particularly useful in describing services that support standard IVOA service protocols.
FAIRsharing.tw6ecm	LinkProt: A database of proteins with topological links	LinkProt	LinkProt collects information about protein chains and complexes that form links. LinkProt detects deterministic links (with loops closed by cysteine), and determines likelihood of formation of links in networks of protein chains called MacroLinks. Links are presented graphically in an intuitive way, using tools that involves surfaces of minimal area spanned on closed loops. The database presents extensive information about biological functions of proteins with links and enables users to analyze new structures.
FAIRsharing.tw7vf	Human Disease-Related Viral Integration Sites	Dr.VIS	Dr.VIS collects and locates human disease-related viral integration sites. So far, about 600 sites covering 5 virus organisms and 11 human diseases are available. Integration sites in Dr.VIS are located against chromesome, cytoband, gene and refseq position as specific as possible. Viral-cellular junction sequences are extracted from papers and nucleotide databases, and linked to cooresponding integration sites Graphic views summarizing distribution of viral integration sites are generated according to chromosome maps.
FAIRsharing.twp7vn	Bionutrition Ontology	BNO	The Bionutrition Ontology relates concepts and terminologies used for human nutrition in a clinical and biomedical setting.
FAIRsharing.tx8cgr	RNA Binding Protein Variant Database	RBP-Var	RBP-Var is a database of functional variants involved in regulation mediated by RNA-binding proteins. Human genome variants can change the RNA structure and affect RNA-protein interactions.
FAIRsharing.txcn6k	NBDC RDF Portal	RDF Portal	The NBDC RDF Portal provides a collection of life science datasets in RDF (Resource Description Framework). The portal aims to accelerate integrative utilization of the heterogeneous datasets deposited by various research institutions and groups. In this portal, each dataset comes with a summary, downloadable files and a SPARQL endpoint.
FAIRsharing.txkh36	Database of Genomic Variants Archive	DGVa	The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.
FAIRsharing.tXtp2S	Extended Knowledge Organization System	XKOS	Extended Knowledge Organization System (XKOS) extends the Simple Knowledge Organization System (SKOS) for statistical classifications. It does so in two main directions. First, it defines a number of terms that enable the representation of statistical classifications with their structure and textual properties, as well as the relations between classifications. Second, it refines SKOS semantic properties to allow the use of more specific relations between concepts. Those specific relations can be used for the representation of classifications or for any other case where SKOS is employed. XKOS adds the extensions that are desirable to meet the requirements of the statistical community.
FAIRsharing.ty3dqs	Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins	PANTHER	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a unique resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence.
FAIRsharing.tyyn81	Health Canada Drug Product Database	HC DPD	The Health Canada Drug Product Database contains product specific information on drugs approved for use in Canada. The database is managed by Health Canada and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. It contains approximately 15,000 products which companies have notified Health Canada as being marketed.
FAIRsharing.tYYt1o	Astromaterials Data System	AstroMat	The Astromaterials Data System is a NASA funded data infrastructure that supports the preservation, discovery, access and analysis of laboratory analytical data generated by the study of astromaterials samples. The Astromaterials Data System operates the Astromaterials Data Repository (AstroRepo), which archives, publishes and makes accessible data generated by the study of lunar samples (samples collected during the Apollo missions), meteorites, interstellar dust, solar wind, presolar grains, and other extraterrestrial materials. AstroRepo follows international best practices for trusted data repositories. The Astromaterials Data System is operated at the Lamont-Doherty Earth Observatory of Columbia University as part of a suite of data systems for Earth and planetary sample data (chemical, mineralogical, and petrological observations), including EarthChem, the System for Earth Sample Registration, and the Library of Experimental Phase Relations.
FAIRsharing.tz3682	Phallusia fumigata Anatomy and Development Ontology	PHFUMIADO	The first ontology describing the anatomy and the development of Phallusia fumigata.
FAIRsharing.tz6hz6	Ontology of Consumer Health Vocabulary	OCHV	A SKOS-encoded implementation of the "Open Access, Collaborative Consumer Health Vocabulary Initiative" by the University of Utah (consumerhealthvocab.org and layhealthinformatics.com)
FAIRsharing.tzlO4X	Adaptive Immune Receptor Repertoire Data Commons API Specification	ADC API Specification	The AIRR Data Commons (ADC) API provides programmatic access to query and download AIRR-seq data. The ADC API uses JSON as its communication format, and standard HTTP methods like GET and POST. The ADC API is read-only and the mechanism of inclusion of AIRR-seq studies into a data repository is left up to the repository. The ADC API Specification explains how to construct and execute API requests and interpret API responses.
FAIRsharing.U7rBYm	Vocabulary of Earth Sciences	None	Earth and Universe Sciences controlled vocabulary used for indexing bibliographical records for the PASCAL database. This resource contains 10835 entries grouped into 60 collections, in two languages (English and French).
FAIRsharing.U9GXhB	National Coronial Information System	NCIS	The National Coronial Information System (NCIS) is a secure database of information on deaths reported to a coroner in Australia and New Zealand. The NCIS contains data on almost 400,000 cases, investigated by a coroner. Data includes demographic information on the deceased, contextual details on the nature of the fatality and searchable medico-legal case reports including the coronial finding, autopsy and toxicology report and police notification of death. The database is available to coroners to assist investigations and access is available on application (subject to ethics approval processes) for research projects.
FAIRsharing.UiP2kL	Therapeutic Structural Antibody Database	Thera-SAbDab	The Therapeutic Structural Antibody Database tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab are downloadable as a single file with accompanying metadata.
FAIRsharing.uo8Q3Z	International Virtual Observatory Alliance UCD Maintenance Policy	IVOA UCD Policy	According to the IVOA Recommendation 'An IVOA standard for Unified Content Descriptors', this procedural document describes the maintenance (add, change, suppress words) of the IVOA list of UCD1+ words 'The UCD1+ Controlled Vocabulary'.
FAIRsharing.uovQrT	Vivli	Vivli	The Vivli data repository provides a global data-sharing and analytics platform serving all elements of the international research community. It is focused on sharing individual participant-level data from completed clinical trials to serve the international research community. Vivli acts as a neutral broker between data contributor and data user and the wider data sharing community. Vivli is a non-profit organization focused on data sharing and analysis. Vivli provides managed access for human subject clinical research data. At a minimum, Vivli will make data available for researchers for 10 years, unless they are contractually unable to do so. On an ongoing basis, Vivli evaluates its data holdings with regard to maintaining access and reserves the right to discontinue the distribution of a data collections when deemed appropriate.When materials are deaccessioned, the data are no longer publicly accessible at Vivli, although they may still be preserved in Vivli’s storage vault. Because digital files are assigned a persistent digital object identifier (DOI), the study description is still available to view, but is not searchable through Vivli. Web crawlers are instructed to ignore the descriptions (via the robots exclusion protocol).
For more information about Vivli’s policy, please contact Vivli at support@vivli.org
It provides a no-charge period for data only available within their secure research environment. There are costs after the no-charge time period ends. Vivli supports managed access as well as embargoing generally and during peer review. Vivli is funded via grants and member fees.
FAIRsharing.uXrXUe	Pregnancy CoRonavIrus Outcomes RegIsTrY	PRIORITY	PRIORITY (Pregnancy CoRonavIrus Outcomes RegIsTrY) is a nationwide study of pregnant or recently pregnant people who are either under investigation for Coronavirus infection (COVID-19) or have been confirmed to have COVID-19. This study is being done to help patients and healthcare providers better understand how COVID-19 impacts pregnant people and their newborns.
FAIRsharing.uxwZ3f	LocustMine	LocustMine	An integrated Omics data warehouse for Locust, Locusta migratoria
FAIRsharing.v033mj	proBed	proBed	The Proteomics Informatics Working Group is developing standards for describing the results of identification and quantification processes for proteins, peptides, small molecules and protein modifications from mass spectrometry. This working group is developing proBed, a tab delimited text file format to report “proteogenomics” results, i.e. the identification and mapping of peptide/protein sequences back against a genome, to assist in annotation efforts. The original BED format is used to describe genome coordinate data across lines, for use on annotation tracks. In BED, data lines are defined as tab-separated plain text with 12 mandatory fields (columns). Of those, only the first three fields are required, and the other 9 are optional. The proBed format builds upon this original structure by extending the 12 original BED fields to include a further 13 fields to describe information primarily on peptide-spectrum matches (PSMs). The format can also accommodate peptides (as groups of PSMs).
FAIRsharing.v11s0z	Neuroscience Information Framework	NIF	NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web.
FAIRsharing.v1dcm3	Digenic diseases database	DIDA	DIDA (DIgenic diseases DAtabase) is a novel database that provides for the first time detailed information on genes and associated genetic variants involved in digenic diseases, the simplest form of oligogenic inheritance.
FAIRsharing.v1h8rk	Atlas of Living Australia IPT - GBIF Australia Repository	ALA IPT - GBIF Australia Repository	The Atlas of Living Australia (GBIF Australia) maintains this data repository in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Able to assign DOIs to datasets, it ensures the data is disseminated in standardized format in order to facilitate wider reuse and integration of the data, for example into GBIF.org. GBIF Australia supports researchers in Australia by providing them helpdesk assistance and by hosting their data for free in this repository.
FAIRsharing.v1knrj	Dash	Dash	Dash is an open source, community driven project that takes a unique approach to data publication and digital preservation. Dash focuses on search, presentation, and discovery and delegates the responsibility for the data preservation function to the underlying repository with which it is integrated. Dash is based at the University of California Curation Center (UC3), a program at California Digital Library (CDL) that aims to develop interdisciplinary research data infrastructure. Dash employs a multi-tenancy user interface providing partners with extensive opportunities for local branding and customization, use of existing campus login credentials, and, importantly, offering the Dash service under a tenant-specific URL, an important consideration helping to drive adoption. We welcome collaborations with other organizations wishing to provide a simple, intuitive data publication service on top of more cumbersome legacy systems.
FAIRsharing.v248nq	Glycomics Ontology	GLYCO	The GlycO ontology provides an up-to-date knowledge base of experimentally verified glycan structures. Glycan (oligosaccharide or polysaccharide) structures are represented as trees of monosaccharide residues. Linkage to proteins and lipids is supported as well. Insertion of a new glycan is controlled by curation process that includes matching the new glycan against a canonical glyco-tree (a highly branched representation for a family of glycans).
FAIRsharing.v2f7t2	Drug Adverse Reaction Target	DART	A database for facilitating the search for drug adverse reaction target. DART contains information about known drug adverse reaction targets, functions and properties.
FAIRsharing.v2sjcy	Canadensys IPT - GBIF Canadensys Repository	None	Canadensys maintains this data repository, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Able to assign DOIs to datasets, it ensures the data is disseminated in standardized format in order to facilitate wider reuse and integration of the data, for example into GBIF.org. Canadensys supports researchers in Canada by providing them helpdesk assistance and by hosting their data for free in this repository.
FAIRsharing.v32qa1	Pre-Clustering File Format	None	The PCL file format is a tab delimited file format that describes an expression dataset.
FAIRsharing.v39er7	Apollo XSD 4.0.1	Apollo XSD	This XML Schema Definition (XSD) contains types for representing infectious disease scenarios for simulation (with and without control measures); diverse kinds of information about epidemics including case count data, seroprevalence study results, infectious disease control measures, disease parameters and infection transmission parameters; and case series.
FAIRsharing.v3jf2q	Human Oral Microbiome Database	HOMD	The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information.
FAIRsharing.v448pt	eCrystals	eCrystals	eCrystals is the archive for Crystal Structures generated by the Southampton Chemical Crystallography Group and the EPSRC UK National Crystallography Service. It contains all the fundamental and derived data resulting from a single crystal X-ray structure determination, but excluding the raw images.
FAIRsharing.v4mara	Data Sharing for Demographic Research	DSDR	Data Sharing for Demographic Research (DSDR) supports the demographic community by disseminating, archiving, and preserving data relevant for population studies. The mission of DSDR is to serve as a locus of information for researchers who collect, analyze, and distribute primary data as well as researchers who analyze secondary data. DSDR aims to foster interdisciplinary collaborations between Demography and other disciplines. DSDR is located within ICPSR and supported by the Population Dynamics Branch (PDB) of the Eunice Kennedy Shriver National Institute of Child Health and Human Development (U24 HD048404).
FAIRsharing.V527H4	Center for Expanded Data Annotation and Retrieval Workbench	CEDAR Workbench	The Center for Expanded Data Annotation and Retrieval (CEDAR) Workbench is a database of metadata templates that define the data elements needed to describe particular types of biomedical experiments. The templates include controlled terms and synonyms for specific data elements. CEDAR is an end-to-end process that enables community-based organizations to collaborate to create metadata templates, investigators or curators to use the templates to define the metadata for individual experiments, and scientists to search the metadata to access and analyze the corresponding online datasets.
FAIRsharing.V52Eqe	PolyASite	PolyASite	Alternative cleavage and polyadenylation (APA) of RNAs gives rise to isoforms with different terminal exons, which in turn determine the fate of the RNA and the encoded protein. APA has thus been implicated in the regulation of cell proliferation, differentiation and disease development. PolyASite is a portal to the curated set of poly(A) sites inferred from publicly available 3’ end sequencing datasets. It allows efficient finding, exploration and export of poly(A) sites in several organisms. In constructing our poly(A) site atlas, we applied uniform quality measures, including the flagging of putative internal priming sites, to input datasets originating from different 3’ end sequencing techniques, cell types or tissues. Through integrated processing of all data, we identified and clustered sites that are closely spaced and share polyadenylation signals, as these are likely the result of stochastic variations in processing. For each cluster, we identified the representative - most frequently processed - site and estimated the relative use in the transcriptome across all samples. While other existing alternative polyadenylation databases rely on a single experimental method, or on poly(A) site estimation from RNA-seq data, PolyASite is built on data from several 3’ end sequencing techniques. This allows a broader coverage of cell types and poly(A) sites to support further genomics studies.
FAIRsharing.v5q4zc	DataMed	DataMed	DataMed is a prototype biomedical data search engine. Its goal is to discover data sets across data repositories or data aggregators. In the future it will allow searching outside these boundaries. DataMed supports the NIH-endorsed FAIR principles of Findability, Accessibility, Interoperability and Reusability of datasets with current functionality assisting in finding datasets and providing access information about them. The data repositories covered in this initial release have been selected by the bioCADDIE team and represent only a small sample of biomedical data. DataMed indexes the core metadata available for most datasets, but it offers enhanced search functions when repositories provide additional metadata.
FAIRsharing.v5xfnf	Globally Unique Identifier and Life Science Identifier Applicability Statement	GUID and LSID Applicability Statements	GUIDs are Globally Unique Identifiers which should be referentially consistent and resolvable in order to support tests of uniqueness and the acquisition of associated metadata. Further, permanent and robust resolution services need to be available. The TDWG Globally Unique Identifiers Task Group (TDWG GUID), after meeting twice in 2006, recommended the use of the Life Sciences Identifiers (LSID) to uniquely identify shared data objects in the biodiversity domain.
FAIRsharing.v5ymcw	Radiation Oncology Structures Ontology	ROS	This ontology describes commonly contoured (anatomical and treatment planning) structures for radiation treatment planning. 22000 structures labels (created over a 16 years period in our radiation department) were extracted, classified and categorized to produce this ontology. Lymph nodes delineation international guidelines are provided. This ontology was created to ease and standardize the integration of radiation oncology data into clinical datawarehouses for multicentric studies. The high granularity of this ontology will allow precise dosimetric evaluations.
FAIRsharing.v665h	Minimal Standard Terminology for Gastrointestinal Endoscopy	MST	The Minimal Standard Terminology (MST) for gastrointestinal endoscopy  is the result of a continuous work by WEO, the European Society of Gastrointestinal Endoscopy (ESGE), the American Society of Gastrointestinal Endoscopy (ASGE) and a large group of international collaborators. Standardization of the language of gastrointestinal endoscopy is becoming increasingly important on account of international collaboration, standardized documentation requirements, and computer-based reporting. The MST offers a selection of terms and attributes for appropriate description of findings, procedures and complications with regards to gastrointestinal endoscopy. It does not offer a complete reference for the endoscopic report.
FAIRsharing.v7ft18	imaging mz Markup Language	imzML	The purpose of imzML is to facilitate the exchange and processing of mass spectrometry imaging data. This website is intended to provide all information neccesary to implement imzML. imzML was developed in the framework of the EU funded project COMPUTIS. The main goals during the development were complete description of MS imaging experiments and efficient storage of (very large) data sets. imzML is it not limited to MS imaging, but is also useful for other MS applications generating large data sets such as LC-FTMS. The metadata part of imzML is based on the mzML format by HUPO-PSI.
FAIRsharing.v8nve2	Joint Committee on Atomic and Molecular Physical data - working group on Data eXchange	JCAMP-DX	JCAMP-DX is used for exchanging moderate numbers of spectra. JCAMP-DX was one of the earliest specifications providing a standard file format for data exchange in mass spectrometry. It was initially developed for infrared spectrometry and related chemical and physical information between spectrometer data systems of different manufacture. It was also used later for nuclear magnetic resonance spectroscopy. JCAMP-DX is an ASCII based format and includes standards for file compression. All data are stored as labeled fields of variable length using printable ASCII characters. JCAMP-DX was found impractical for today's large MS data sets, but it is still used for exchanging moderate numbers of spectra. IUPAC is currently in charge of its maintenance and the latest protocol is from 2005.
FAIRsharing.v8sf83	Standardization in Laboratory Automation Consortium	SiLA	SiLA is a global not-for-profit consortium of laboratory automation users, device suppliers, and integrators. Its mission is to establish international standards which create open connectivity in lab automation. SiLA enables vendor-independent device control and data exchange, through standard instrument interfaces and common command dictionaries, as well as data capture and labware description file standards.
FAIRsharing.V9QrV3	Earth Observing Laboratory Data Archive	EOL Data Archive	The Earth Observing Laboratory (EOL) Data Archive contains atmospheric, meteorological, and other geophysical datasets from operational sources and the scientific research programs and projects for which NCAR/EOL has provided data management support.
FAIRsharing.va1hck	Minimum Information about a (Meta)Genome Sequence	MIxS - MIGS/MIMS	MIGS/MIMS (Minimum Information About a (Meta)Genome Sequence) outlines a conceptual structure for extending the core information that has been traditionally captured by the INSDC (DDBJ/EMBL/Genbank) to describe genomic and metagenomic sequences. The MIMS extension describes key aspects of environmental context.
FAIRsharing.va62ke	BiGG Models	BiGG Models	BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions. BiGG Models integrates more than 70 published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs.
FAIRsharing.vb7991	Ontology of Genes and Genomes - Mouse	OGG-MM	OGG-Mm is the OGG Mus musculus (mouse) subset. The OGG (Ontology of Genes and Genomes) is a formal ontology of genes and genomes of biological organisms. OGG is developed by following OBO Foundry principles and aligning with the BFO top-level ontology.
FAIRsharing.vbejb6	Genomic Feature and Variation Ontology	GFVO	The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). The GFVO specifically addresses genomic data as it is regularly shared using the GFF3 (incl. FASTA), GTF, GVF and VCF file formats. GFVO simplifies data integration and enables linking of genomic annotations across datasets through common semantics of genomic types and relations. NOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed.
FAIRsharing.VBxAep	arthistoricum.net@heiDATA	arthistoricum.net@heiDATA	arthistoricum.net@heiDATA is the research data repository of arthistoricum.net (Specialized Information Service Art - Photography - Design). It provides art historians with the opportunity to permanently publish and archive research data in the field of art history in connection with an open access online publication (e.g. article, ejournal, ebook) hosted by Heidelberg University Library. All research data e.g. images, videos, audio files, tables, graphics etc. receive a DOI (Digital Object Identifier). The data publications can be cited, viewed and permanently linked to as distinct academic output.
FAIRsharing.vc9xtj	General Formal Ontology: Biology	GFO-BIO	GFO-Bio is a biological core ontology based on the top-level ontology General Formal Ontology (GFO).
FAIRsharing.vcmz9h	SICAS Medical Image Repository	SMIR	The Sicas Medical Image Repository is a medical database for academic, scientific, technical and clinical biomedical research and collaboration. Registration is required for data download and usage, although browsing and searching is available without registration.
FAIRsharing.vd25jp	J-GLOBAL	J-GLOBAL	J-GLOBAL links information related to research and development, such as linking articles and patents with people (authors and inventors). It also contains other research information including chemical substances, genes, technical terms and research projects. The Japanese Chemical Substances Dictionary Web (Nikkaji Web, an organic compound dictionary database) and J-GLOBAL were integrated in March 2016, and since that time the name J-GLOBAL has been used.
FAIRsharing.vd694s	Agricultural Metadata Element Set	AgMES	The Agricultural Metadata Element Set (AgMES) provides a solution to semantic data standards such as the description, resource discovery, interoperability and data exchange for different types of information resources. AgMES as a namespace is designed to include agriculture specific extensions for terms and refinements from established standard metadata namespaces like Dublin Core, AGLS etc.
FAIRsharing.vdenk6	Phylogenetic Ontology	PHYLONT	Ontology for Phylogenetic Analysis
FAIRsharing.ve0710	Molecular Interaction Tabular	MITAB	The MITAB27 format is an extension of the PSI-MI 2.5 (1) and 2.6 standard. It has been derived from the tabular format provided by BioGrid. MITAB27 only describes binary interactions, with one pair of interactors per row.
FAIRsharing.vebj4e	RNA Characterization of Secondary Structure Motifs	RNA CoSSMos	RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops.
FAIRsharing.vekcbe	HIVOntologymain.owl	HIVO004	This ontology does not appear to have a project homepage, and complete metadata cannot be found. Please get in touch with us if you have any information.
FAIRsharing.VErHgW	EMODnet Human Activities	None	EMODnet Human Activities provides access to existing marine data on activities carried out in EU waters by building a single entry point for geographic information on 14 different themes. The portal includes information on geographical position, spatial extent of a series of activities related to the sea, their temporal variation, time when data was provided, and attributes to indicate the intensity of each activity. The data are aggregated and presented so as to preserve personal privacy and commercially-sensitive information. The data also include a time interval so that historic as well as current activities can be included.
FAIRsharing.vfgn70	MycoBrowser marinum	None	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.
FAIRsharing.vgw1m6	Neuroscience Information Framework Standard Ontology	NIFSTD	NIF Standard ontology (NIFSTD) is a core component of Neuroscience Information Framework (NIF) project (http://neuinfo.org), a semantically enhanced portal for accessing and integrating neuroscience data, tools and information. NIFSTD includes a set of modular ontologies that provide a comprehensive collection of terminologies to describe neuroscience data and resources.
FAIRsharing.vgx074	Master Drug Data Base Clinical Drugs	MDDB	Master Drug Data Base provides comprehensive and current drug information from a single source. The resource provides pricing and descriptive drug information on name brand, generic, prescription and OTC medications, and herbal products. It includes industry standard identifiers for all brand and generic drugs on the market including National Drug Code (NDC), Universal Product Code (UPC) and Health Related Item (HRI) numbers.
FAIRsharing.vh2ye1	Minimum Information About Cell Migration Experiment	MIACME	The Minimum Information About Cell Migration Experiment is being defined by the Cell Migration Standardization Organization.
FAIRsharing.vh9jbb	Ontology for Genetic Interval	OGI	Using BFO (Basic Formal Ontology) as its upper-level ontology, the Ontology for Genetic Interval (OGI) represents gene as an entity with its 3D shape, topography, and primary DNA sequence as the foundation for its 3D structure. There is no official homepage for this resource, and it is not currently in active development. However, the maintainer has described it as available for use via BioPortal and OBO Foundry.
FAIRsharing.vhgehd	Subcellular Anatomy Ontology	SAO	SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.
FAIRsharing.vhsxbz	Gordon and Betty Moore Foundation Data Sharing Philosophy and Plan	GBMF Data Sharing Policy	As part of the grant development process, the foundation may ask prospective grantees to develop a Data Sharing and/or Intellectual Property Plan. In this case, before funding is approved, the foundation and prospective grantee will agree on a plan that reflects the objectives of this policy. Implementation of the plan will be a condition of the grant and incorporated by reference in the grant agreement. The plan should address the topics described in our Data Sharing and Intellectual Property Packet.
FAIRsharing.VJDEtl	Cooler file format	.cool	Cooler is a file format that implements genomically-labeled sparse 2D arrays (matrices) with identical axes in HDF5. It is also the name of the Python package that supports the format. Cooler was designed for the storage and manipulation of extremely large Hi-C datasets at any resolution, but is not limited to Hi-C data in any way. Standard file extensions are .cool for single-resolution cooler files and .mcool for files storing multiple resolutions.
FAIRsharing.vjWUT7	SupraBank	SupraBank	SupraBank is a resource for intermolecular interactions, in particular host:guest but also ligand:protein and polymer interactions as well as surface adsorption processes. The reporting of conditions during the analysis of intermolecular interactions, such as binding isotherms, are in general annotated via text-based notations for human readability. In order to compare binding data, the conditions of the experiments should be structured and machine readable for ease of processing. SupraBank offers the scientists a platform to view experimental data as well as machine-readable access. This platform is intended for all natural sciences, but especially for physical chemistry and supramolecular chemistry.
FAIRsharing.vk0ax6	MicrosporidiaDB	MicrosporidiaDB	MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
FAIRsharing.vk3v6s	GermOnline	GermOnline	GermOnline is a cross-species database gateway focusing on high-throughput expression data relevant for germline development, the meiotic cell cycle and mitosis in healthy versus malignant cells. The portal provides access to the Saccharomyces Genomics Viewer (SGV) which facilitates online interpretation of complex data from experiments with high-density oligonucleotide tiling microarrays that cover the entire yeast genome.
FAIRsharing.vkr57k	GWAS Central	GWAS Central	GWAS Central stores genome-wide association study data. The database content comprises direct submissions received from GWAS authors and consortia in addition to actively gathered data sets from various public sources. GWAS data are discoverable from the perspective of genetic markers, genes, genome regions or phenotypes, via graphical visualizations and detailed downloadable data reports.
FAIRsharing.vm1x6q	Medical Error Ontology	MEDEON	This is a demo version of the patient safety ontology.
FAIRsharing.vm4688	RDL	RDL	RDL
FAIRsharing.vm6g21	Integrated Genomic Database of Non-Small Cell Lung Cancer	IGDB.NSCLC	Integrated Genomic Database of Non-Small Cell Lung Cancer.
FAIRsharing.vM7i3k	IVOA Single-Sign-On Profile: Authentication Mechanisms	SSO - Authentication	Single-Sign-On Profile: Authentication Mechanisms is a guideline describing approved client-server authentication mechanisms for the IVOA single-sign-on profile. These mechanisms include: No Authentication; HTTP Basic Authentication; TLS with passwords; TLS with client certificates; Cookies; Open Authentication; Security Assertion Markup Language; OpenID. Normative rules are given for the implementation of these mechanisms, mainly by reference to pre-existing standards. The Authorization mechanisms are out of the scope of this document.
FAIRsharing.vmfdmh	Springer Nature Research Data Policy Type 2	None	The Springer Nature Research Data Policy Type 2 encourages data sharing and evidence of data sharing. Materials described in the manuscript, including all relevant raw data, will be freely available to any researcher wishing to use them for non-commercial purposes, without breaching participant confidentiality. The journal strongly encourages that all datasets on which the conclusions of the paper rely should be available to readers. Authors are encouraged to ensure that their datasets are either deposited in publicly available repositories (where available and appropriate) or presented in the main manuscript or additional supporting files whenever possible. Journals adhering to this policy recommend 1) the resources listed directly within this record, and 2) all resources listed in this record's parent policies (see the "extends" relationship).
FAIRsharing.vmq5yj	Orfeus - European Integrated Data Archive	Orfeus - EIDA	EIDA, an initiative within ORFEUS, is a distributed federation of datacenters established to (a) securely archive seismic waveform data and metadata gathered by European research infrastructures, and (b) to provide transparent access to the archives by the geosciences research communities.
FAIRsharing.vmsc5w	Simulation Delivery and Documentation Deviations	SD3	The taxonomy will facilitate quality assurance in scenario delivery, permit standardized descriptors of simulation delivery deviations, and enable researchers to quantify the impact that scenario delivery and documentation deviations have upon participant performance. Though created specifically for high-fidelity mannequin-based simulation, the taxonomy can be applied to other simulation modalities.
FAIRsharing.vnfaxd	LINCS Pilot Phase 1 Metadata Standards: Other Reagents	LINCS 1: Other Reagents	The LINCS Pilot Phase 1 metadata standards annotate reagents outside the context of the experiments in which they were used. This category serves to describe generic reagents that fall outside of any of the previously listed specific categories.
FAIRsharing.vpy0jx	Knowledge Object Reference Ontology	KORO	An ontology to define the parts of a Knowledge Object and their relations built using the Basic Formal Ontology and Information Artifact Ontology
FAIRsharing.vrhbra	Minimum Information Required for A Glycomics Experiment -  Sample Preparation	MIRAGE - Sample Preparation	MIRAGE (Minimum Information Required for A Glycomics Experiment) was created to improve the quality of glycomics data in the scientific literature. The sample preparation guidelines are designed to include all aspects of sample generation, purification and modification from biological and/or synthetic material. Fundamentally, the application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets. In addition, these guidelines are considered as a common basis for any further MIRAGE reporting guidelines in order to keep the requirements for data analysis short and consistent.
FAIRsharing.VRo9Dl	FAIR Maturity Indicator Gen2-MI-F1B	None	The FAIR Maturity Indicator Gen2-MI-F1B measures whether the GUID matches (regexp) a GUID scheme recognized as being persistent. The change to an identifier scheme will have widespread implications for resource lookup, linking, and data sharing. Providers of digital resources must try to use GUID types that are guaranteed, by stable third-parties, to be persistent. This includes stable providers of PURLs.
FAIRsharing.VrP6sm	FAIR Maturity Indicator Gen2-MI-A1.2	None	The FAIR Maturity Indicator Gen2-MI-A1.2 measures if the resolution protocol supports authentication and authorization for access to restricted content.
FAIRsharing.vrs7vz	Turkish Journal of Veterinary Research	TJVR	The Turkish Journal of Veterinary Research (TJVR) is a biannual (March-April and November-December), open access, peer-reviewed veterinary medical journal that publishes manuscripts online in the general area of veterinary medical research.
FAIRsharing.vszknv	Nuclear Receptor Signaling Atlas	NURSA	The mission of NURSA is to accrue, develop, and communicate information that advances our understanding of the roles of nuclear receptors (NRs) and coregulators in human physiology and disease.
FAIRsharing.vttygv	BEDgraph	BEDgraph	The bedGraph format allows display of continuous-valued data in track format. This display type is useful for probability scores and transcriptome data. This track type is similar to the wiggle (WIG) format, but unlike the wiggle format, data exported in the bedGraph format are preserved in their original state.
FAIRsharing.vv9tsb	ISO-15926-2_2003_entityMembershipCandidates	ENTITYCANDIDATES	ISO entity candidates for oil and gas
FAIRsharing.vVdc4Q	IVOA Web Services Basic Profile	None	The IVOA Web Services Basic Profile describes rules to take into account when implementing SOAP-based web services for the Virtual Observatory. It explains also how to check conformance to these rules. It can be read as a "Guideline to VO Web Service Interoperability" or a "How to provide interoperable VO web services".
FAIRsharing.vvhpss	Minimum Information About Somatic Mutation	MIASM	MIASM was developed for the collection of somatic variations to promote standards for annotations of somatic variation data, and to promote data integration with other data resources. The guidelines have been published and recently updated.
FAIRsharing.VW2yBw	Genome3D	Genome3D	Genome3D is a resource that provides structural annotation and 3D models of genomes of model organisms such as human, yeast and E.coli. The database can be used to predict protein structures that have not yet been identified. Genome3D uses structural classification data from several UK-based resources including CATH and SCOP.
FAIRsharing.vwmc9h	AceView genes	AceView	AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes.
FAIRsharing.vx5OEv	ViruSurf	ViruSurf	ViruSurf is a large public database of viral sequences and integrated and curated metadata from heterogeneous sources (RefSeq, GenBank, COG-UK and NMDC); it also exposes computed nucleotide and amino acid variants, called from original sequences. A GISAID-specific ViruSurf database offers a subset of these functionalities. Given the current pandemic outbreak, SARS-CoV-2 data are collected from the four sources; but ViruSurf contains other virus species harmful to humans, including SARS-CoV, MERS-CoV, Ebola, and Dengue. The database is centered on sequences, described from their biological, technological, and organizational dimensions. In addition, the analytical dimension characterizes the sequence in terms of its annotations and variants. The web interface enables expressing complex search queries in a simple way; arbitrary search queries can freely combine conditions on attributes from the four dimensions, extracting the resulting sequences. Several example queries on the database confirm and possibly improve results from recent research papers; results can be recomputed over time and upon selected populations. Effective search over large and curated sequence data may enable faster responses to future threats that could arise from new viruses.
FAIRsharing.VXoFLf	Domain-centric GO	dcGO	Domain-centric GO provides associations between ontological terms and protein domains at the superfamily and family levels. Some functional units consist of more than one domain acting together or acting at an interface between domains; therefore, ontological terms associated with pairs of domains, triplets and longer supra-domains are also provided.
FAIRsharing.vxyt0f	Lipid Ontology	LiPrO	Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical functions can be applied. The ontology describes the LIPIDMAPS nomenclature classification explicitly using description logics (OWL-DL).
FAIRsharing.vy4h4j	Minimal Information for QTLs and Association Studies	MIQAS	The MIQAS set of rules accompanied with the standardized XML and tab-delimited file formats will serve two goals: to encourage research groups that wish to publish a QTL paper to provide and submit the necessary information that would make meta-analysis possible. to allow easy interchange of data between different QTL and association analysis databases. Databases that implement the standardized XML format will typically write an import and an export filter to read data from and dump data into that an XML file.
FAIRsharing.vywjrq	New Taxonomy database	NEWT	While the original homepage was http://www.ebi.ac.uk/newt/, this link no longer works as NEWT is deprecated. Therefore, to have a valid homepage, a link has been provided to the resource that should be used instead.
FAIRsharing.vzrsab	Uniprot Tissues controlled vocabulary	Uniprot Tisslist	The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues in the "TISSUE" topic of the RC line type. It also contains cross-references to other ontologies where tissue types are specified.
FAIRsharing.w13xsb	National Center for Atmospheric Research Climate Data Gateway	NCAR Climate Data Gateway	The NCAR Climate Data Gateway is a gateway to scientific data on environmental and earth science around the globe. It provides data discovery and access services for global and regional climate model data, knowledge, and software. The NCAR Climate Data Gateway supports community access to data products from many of NCAR's community modeling efforts, including the IPCC, PCM, AMPS, CESM, NARCCAP, and NMME activities.
FAIRsharing.w1y0c7	European Union Drug Regulating Authorities Clinical Trials	EudraCT	EudraCT (European Union Drug Regulating Authorities Clinical Trials) is the European Clinical Trials Database of all interventional clinical trials of medicinal products commencing in the European Union from 1 May 2004 onwards. The EudraCT database has been established in accordance with Directive 2001/20/EC.
FAIRsharing.w2cepp	Assembling the Fungal Tree of Life	AFTOL	The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life.
FAIRsharing.w2mrnx	Computer Assisted Brain Injury Rehabilitation Ontology	CABRO	CABRO is a web ontology for the semantic representation of the computer assisted brain trauma rehabilitation domain. This research area employs the use of robotic devices, adaptation software and machine learning to facilitate interactive, adaptive and personalized rehabilitation care, patient monitoring and assisted living.
FAIRsharing.w2vev5	Biodiversity Information Serving Our Nation IPT - USGS	BISON IPT - USGS	The U.S. node to GBIF represents an integral part of the U.S. Geological Survey’s activities to collect, organize and share biological information. As with other initiatives, the U.S. GBIF node streamlines access to U.S. biodiversity information and links it with broader geoscience data to address critical societal issues. BISON is the primary project contributing to the node. It provides a specialized view of GBIF records for the U.S. and assists with provision of U.S. records to GBIF.
FAIRsharing.w4bthd	Springer Nature Research Data Policy Type 3 (for life sciences)	None	Springer Nature Research Data Policy Type 3 (for life sciences) encourages data sharing and requires statements of data availability. This ensures that materials described in the manuscript, including all relevant raw data, will be freely available to any researcher wishing to use them for non-commercial purposes, without breaching participant confidentiality. The journal strongly encourages that all datasets on which the conclusions of the paper rely should be available to readers. They also encourage authors to ensure that their datasets are either deposited in publicly available repositories (where available and appropriate) or presented in the main manuscript or additional supporting files whenever possible. Journals adhering to this policy recommend 1) the resources listed directly within this record, and 2) all resources listed in this record's parent policies (see the "extends" relationship).
FAIRsharing.w4g3sj	Space Physics Archive Search and Extract Data Model	SPASE Data Model	An exclusive set of resource types which can be used to describe all the resources in a heliophysics data environment, the data along with its scientific context, source, provenance, content and location. It is designed to support a federated data system where data may reside at different locations and may be seperated from the metadata which describes it. While the data model is neutral on how to it may be expressed, the preferred expression form is XML
FAIRsharing.w4k4nr	Nature Scientific Data - Data Repository Guidance		A list of the repositories and standards recommended by the Nature Publishing Group journal, Scientific Data. Scientific Data mandates the release of datasets accompanying our Data Descriptors. Data should be submitted to discipline-specific, community-recognized repositories where possible, or to generalist repositories if no suitable community resource is available. Journals adhering to this policy recommend 1) the resources listed directly within this record, and 2) all resources listed in this record's parent policies (see the "extends" relationship).
FAIRsharing.w55kwn	DANS-EASY Electronic Archiving System	EASY	EASY is the online archiving system of Data Archiving and Networked Services (DANS). EASY provides access to thousands of datasets in the humanities, the social sciences and other disciplines. EASY can also be used for the online depositing of research data. DANS encourages researchers to make there digital research data and related outputs Findable, Accessible, Interoperable and Reusable.
FAIRsharing.w5kj3q	Loggerhead Nesting Ontology	None	A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms. An ontology for Loggerhead sea turtle (Caretta caretta) nesting behavior, based on the published ethogram of Hailman and Elowson.
FAIRsharing.W6zGvD	Universal Worker Service Pattern	UWS	The Universal Worker Service (UWS) pattern defines how to manage asynchronous execution of jobs on a service. Any application of the pattern defines a family of related services with a common service contract. Possible uses of the pattern are also described.
FAIRsharing.w7a76x	Plant Environmental Ontology	EO	EO is a structured, controlled vocabulary for the representation of plant environmental conditions. EO has now been replaced by PECO. If you are using classes like EO:nnnnnn then you should be able to substitute this for PECO:nnnnnn, as all of the numeric parts of the ID are preserved. For a more robust mechanism, peco.obo contains alt_ids, and peco.owl contains the equivalent replaced_by assertions, which point from an obsoleted EO class to the corresponding PECO class.
FAIRsharing.w7kfdn	Cardiac Electrophysiology Ontology	EP	The Cardiac Electrophysiology Ontology contains terms describing single-channel electrophysiological experiments and data obtained using voltage-clamp, current clamp and fluorescence imaging techniques applied at the cell level and multi-channel fluorescence imaging techniques applied at the cell, tissue and whole heart levels. This tool is part of the Cardiovascular Research Grid project (http://wiki.cvrgrid.org/index.php/Main_Page) which is part funded by the NIH. This ontology does not seem to be actively maintained, and has therefore been marked as having an Uncertain status within FAIRsharing. Please contact us if you have any information concerning the current status of this resource.
FAIRsharing.w7Yuyx	PhytoMine	PhytoMine	An InterMine interface to data from Phytozome
FAIRsharing.w8g777	Human Interaction Network Ontology	HINO	The Human Interaction Network Ontology (HINO) is an INO extension for the domain of human interaction networks. It has incorporated Reactome reactions and pathways. Like INO, HINO aligns with BFO. HINO is developed following the OBO Foundry principles. Please note that the homepage listed is an indirect homepage only, as no project-specific homepage could be found.
FAIRsharing.w8wbq0	Springer Nature - Nature Immunology - Availability of Data and materials	None	Nature Publishing Group policy on data and material availability is based on the principle that all data should be freely available to the research community. This policy describes the reporting requirements as well as the data, material and computer code availability. The policy also describes the requirements for experimental protocols and clinical trials.
FAIRsharing.w8wbyj	BRCA Share	BRCA Share	BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory organizations around the world with open access to BRCA Share (formerly UMD-BRCA1) contains BRCA1 and BRCA2 genetic data. The program’s goal is to accelerate research on BRCA gene mutations, particularly variants of uncertain significance, to improve the ability of clinical laboratory diagnostics to predict which individuals are at risk of developing these cancers.
FAIRsharing.wBOua0	PLAZA	PLAZA	PLAZA is a platform for comparative, evolutionary, and functional genomics. The platform consists of multiple instances, where each instance contains additional genomes, improved genome annotations, new software tools, etc.
FAIRsharing.wcfkac	PhysicalFields	Field	"PhysicalFields" was an ontology standard. Unfortunately, we have been unable to find any further information about PhysicalFields. If you know more, such as the contact details for the people involved, or a legacy website or publication, please do get in touch with the FAIRsharing team via the 'Suggest an edit/Ask a question' button available via the drop-down menu on the top right of this record.
FAIRsharing.wd68xv	Brain Region & Cell Type Terminology	BRCT	The Brain Region and Cell Type terminology (BRCT) describes brain anatomy with a top-down granularity, from gross regions to cell types. This resource has been created for use in the IMI-funded AETIONOMY project (www.aetionomy.org).
FAIRsharing.wd8j2q	bibliotek-o	bibliotek-o	bibliotek-o is an ontology framework for modeling bibliographic metadata based on the Library of Congress BIBFRAME ontology. It includes: the bibliotek-o ontology, which defines extensions and modifications to BIBFRAME and is intended to be used as a supplement to the core BIBFRAME ontology; a set of external ontology fragments (including BIBFRAME) intended for use with the bibliotek-o ontology; and a data model and application profile - i.e., a set of recommended models and patterns for expressing bibliographic metadata using BIBFRAME, the bibliotek-o ontology, and other external ontologies. bibliotek-o 2017-07-06 Release of Version 1.1.0 will remain frozen until further notice.
FAIRsharing.wdbd3r	MetaCrop 2.0	MetaCrop 2.0	The MetaCrop resource contains information on the major metabolic pathways mainly in crops of agricultural and economic importance. The database includes manually curated information on reactions and the kinetic data associated with these reactions. Ontology terms are used and publication identification available to ease mining the data.
FAIRsharing.WDGf1A	Arctic Data Archive System	ADS	The Arctic Data Archive System is a collection of many observational (atmosphere, ocean, terrestrial, and ecology) and model simulation datasets, and promote utilization of these datasets. ADS is the central repository of archived data on Arctic research in Japan.
FAIRsharing.wdrf9x	MIAPE: Mass Spectrometry Quantification	MIAPE-Quant	This module identifies the minimum information required to report the use of quantification techniques in a proteomics experiment, sufficient to support both the effective interpretation and assessment of the data and the potential recreation of the results of the data analysis.
FAIRsharing.we178a	World-2DPAGE Repository	World-2DPAGE	A public standards-compliant repository for gel-based proteomics data linked to protein identification published in the literature. The repository is continuously extended, putting together a large collection of multi-species reference maps, with thousands of identified spots..
FAIRsharing.wf28wm	UniProt Taxonomy	UP Taxonomy	The taxonomy database that is maintained by the UniProt group is based on the NCBI taxonomy database, which is supplemented with data specific to the UniProt Knowledgebase (UniProtKB). While the NCBI taxonomy is updated daily to be in sync with GenBank/EMBL-Bank/DDBJ, the UniProt taxonomy is updated only at UniProt releases to be in sync with UniProtKB. It may therefore happen that for the time period of a UniProt release, you can find new taxa at the NCBI that are not yet in UniProt (and vice versa for deleted taxa). Species with manually annotated and reviewed protein sequences in the Swiss-Prot section of UniProtKB are named according to UniProt nomenclature. In particular, we have adopted a systematic convention for naming viral and bacterial strains and isolates.
FAIRsharing.wf9q40	Wellcome Open Research Data Guidelines	None	This is a non-exhaustive list of databases, standards, and policies that have been approved for a Wellcome Open Research article.
FAIRsharing.wFo3UE	SCPortalen	SCPortalen	SCPortalen is a single-cell database created to facilitate and enable researchers to access and explore published single-cell datasets. It integrates human and mouse single-cell transcriptomics datasets, single-cell metadata, cell images and sequence information.
FAIRsharing.wfrsvq	gpDB	gpDB	GpDB is a publicly accessible, relational database of G-proteins and their interactions with GPCRs and effector molecules. The sequences are classified according to a hierarchy of different classes, families and sub-families, based on extensive literature search.
FAIRsharing.wfyvvz	APA Treatment Cluster	APATREATMENT	APA Treatment Cluster
FAIRsharing.wgfrmg	Crop Ontology	CO	The Crop Ontology project is a service of the Integrated Breeding Platform to harmonize the traits measured by breeders. Crop Ontology provides trait names and standard variables that annotate precisely the trait observation made. CO is to be used from data capture with fieldbooks to storing data files in databases and repositories.
FAIRsharing.wggn02	LINCS Extended Metadata Standard: Nucleic Acid Reagents	LINCS 2: Nucleic Acid Reagents	LINCS Production Phase 2 Extended Metadata Standards, including this guideline on Nucleic Acid Reagents, were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project.
FAIRsharing.wgvr02	Minimal Information for QTLs and Association Studies Tabular	MIQAS-TAB	The MIQAS set of rules accompanied with the standardized XML and tab-delimited file formats will serve two goals: to encourage research groups that wish to publish a QTL paper to provide and submit the necessary information that would make meta-analysis possible. to allow easy interchange of data between different QTL and association analysis databases. Databases that implement the standardized XML format will typically write an import and an export filter to read data from and dump data into that an XML file. This is the same approach as used for the exchange of sequences between NCBI, Ensembl and DDBJ at the early stages of the Human Genome Project.
FAIRsharing.wjhf24	openSNP	openSNP	A crowdsourced collection of personal genomics data. Includes SNP genotyping, exome sequencing data, phenotypic annotation and quantified self tracking data.
FAIRsharing.wjqnt4	Multi-Omics Metadata Checklist	MOMDC	We have created a Multi-Omics Metadata checklist to ensure consistent data quality and comprehensive meta-data. We used previously developed data submission policies for PRIDE and GEO as starting points for gathering information on the experimental design, experimental protocols, instrumentation, data processing and analysis methods. Through DELSA community outreach and the Advisory Committee, we will continue to refine and finalize the Multi-Omics Metadata checklist using a combination of reputable ontologies available through Open Biological and Biomedical Ontologies, best community practices, and developments from the NSF-funded Research Data Alliance and GSC.
FAIRsharing.wjwb5c	CHADO XML	CHADO XML	Chado is a modular schema covering many aspects of biology, not just sequence data. Chado-XML has exactly the same scope as the Chado schema.
FAIRsharing.wk5azf	Database of Sequence Tagged Sites	dbSTS	dbSTS is an NCBI resource that contains sequence data for short genomic landmark sequences or Sequence Tagged Sites.
FAIRsharing.wkggtx	Dryad	Dryad	Dryad is an open-source, community-led data curation, publishing, and preservation platform for CC0 publicly available research data. Dryad has a long-term data preservation strategy, and is a Core Trust Seal Certified Merritt repository with storage in US and EU at the San Diego Supercomputing Center, DANS, and Zenodo. While data is undergoing peer review, it is embargoed if the related journal requires / allows this. Dryad is an independent non-profit that works directly with: researchers to publish datasets utilising best practices for discovery and reuse; publishers to support the integration of data availability statements and data citations into their workflows; and institutions to enable scalable campus support for research data management best practices at low cost. Costs are covered by institutional, publisher, and funder members, otherwise a one-time fee of $120 for authors to cover cost of curation and preservation. Dryad also receives direct funder support through grants.
FAIRsharing.wkh9j2	nucleotide inFormation binary Format	None	The .nib format pre-dates the .2bit format and is less compact. It describes a DNA sequence by packing two bases into each byte.
FAIRsharing.wkhxc8	Predictive Model Markup Language	PMML	PMML (Predictive Model Markup Language) uses XML to represent data mining models. The structure of the models is described by an XML Schema. One or more mining models can be contained in a PMML document. A PMML document is an XML document with a root element of type PMML.
FAIRsharing.wL29nJ	Digital Repository of Ireland	DRI	The Digital Repository of Ireland (DRI) is a national trusted digital repository (TDR) for Ireland’s social and cultural data. We preserve, curate, and provide sustained access to a wealth of Ireland’s humanities and social sciences data through a single online portal. The repository houses unique and important collections from a variety of organisations including higher education institutions, cultural institutions, government agencies, and specialist archives. DRI has staff members from a wide variety of backgrounds, including software engineers, designers, digital archivists and librarians, data curators, policy and requirements specialists, educators, project managers, social scientists and humanities scholars. DRI is certified by the CoreTrustSeal, the current TDR standard widely recommended for best practice in Open Science.  In addition to providing trusted digital repository services, the DRI is also Ireland’s research centre for best practices in digital archiving, repository infrastructures, preservation policy, research data management and advocacy at the national and European levels. DRI contributes to policy making nationally (e.g. via the National Open Research Forum and the IRC), and internationally, including European Commission expert groups, the Digital Preservation Coalition, DARIAH, and the OECD.
FAIRsharing.wmB5Os	Archive of Data on Disability to Enable Policy and research	ADDEP	The Archive of Data on Disability to Enable Policy and research (ADDEP) is a repository of data on disability and rehabilitation. ADDEP was created to provide access to disability and rehabilitation data; provide technical assistance for data users; and build a connection between research data, community outreach, and activism. Types of data in ADDEP include disability status, health care, rehabilitation services and medicine, disability employment, income, education, and disability policies.
FAIRsharing.wmZz9V	WormMine	WormMine	WormMine integrates many types of data for C. elegans and related nematodes. You can run flexible queries, export results and analyse lists of data.
FAIRsharing.wn5ts1	American Society of Clinical Oncology - Journal of Clinical Oncology - Manuscript Guidelines	None	This document describes the requirements of the Journal of Clinical Oncology for author submissions, and include information on data deposition and submission both to the journal and to public repositories. The Journal requires that data sets relevant to the development of predictive or prognostic markers, as well as those relevant to risk assessment, be submitted along with the original work as a supplemental file. Prior to publication, data sets or sequences relevant to the research must be provided in full, including gene expression profiling data with clinical correlative information. Such data must be anonymized and may be provided either as a supplementary file or by depositing the data in a public data base such as GenBank, Gene Expression Omnibus, or Array Express, with the accession number provided in the text of the final manuscript. As a condition of publication, it is expected that authors will share all data relevant to the manuscript with readers who may wish to replicate the results.
FAIRsharing.wnbDmb	TAPRegExt	TAPRegExt	TAPRegExt is a VOResource schema extension for describing TAP services. It is an XML encoding standard for metadata about services implementing the table access protocol (TAP). Instance documents are part of the service's registry record or can be obtained from the service itself. They deliver information to both humans and software on the languages, output formats, and upload methods supported by the service, as well as data models implemented by the exposed tables, optional language features, and certain limits enforced by the service. To accommodate a wide variety of requirements, the TAP specification offers implementors many choices on optional features, resource limits, or locally defined functionality. One purpose of TAPRegExt is to allow the service to communicate such choices to remote clients using the mechanisms laid down in the VO Service Interfaces standard
FAIRsharing.wOcTaM	Genomic Observatories Meta-Database	GEOME	The Genomic Observatories Meta-Database (GEOME) is a web-based database that captures the who, what, where, and when of biological samples and associated genetic sequences. GEOME helps users with the following goals: ensure the metadata from your biological samples is findable, accessible, interoperable, and reusable; improve the quality of your data and comply with global data standards; and integrate with R, ease publication to NCBI's sequence read archive, and work with an associated LIMS. The initial use case for GEOME came from the Diversity of the Indo-Pacific Network (DIPnet) resource.
FAIRsharing.wp0134	Clusters of Orthologous Groups (COG) Analysis Ontology	CAO	CAO ontology is designed for supporting the COG enrichment study by using Fisher's exact test. It is used for the ontology based application for statistical analysis on COG db.
FAIRsharing.wP3t2L	Complex Portal	CP	The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms. The majority of complexes are made up of proteins but may also include nucleic acids or small molecules. All data is freely available for search and download.
FAIRsharing.wpxab1	Current Procedural Terminology	CPT	Current Procedural Terminology is a medical nomenclature used to report medical procedures and services under public and private health insurance programs.
FAIRsharing.WQLolR	HEALPix Multi-Order Coverage Map	MOC	This document describes the Multi-Order Coverage map method (MOC) to specify arbitrary sky regions. The goal is to be able to provide a very fast comparison mechanism between coverage maps. The mechanism is based on the HEALPix sky tessellation algorithm. It is essentially a simple way to map regions of the sky into hierarchically grouped predefined cells. The encoding method described in this document allows one to define and manipulate any region of the sky in such a way that basic operations like union, intersection, equality test can be performed very efficiently. It is dedicated to Virtual Observatory (VO) applications or VO data servers for building efficient procedures for which mapping knowledge is required like generic catalog cross-match, computation of data set intersections, or similar operations.
FAIRsharing.wqSgg8	Data format for custom-compiled Project Tycho 2.0 dataset CSV files	Project Tycho Custom-compiled Data Standard	Data format for datasets compiled and downloaded through the Project Tycho Graphical User Interface or API.
FAIRsharing.wqtfkv	MINAS - A Database of Metal Ions in Nucleic AcidS	MINAS	MINAS contains the exact geometric information on the first and second-shell coordinating ligands of every metal ion present in nucleic acid structures that are deposited in the PDB and NDB. Containing also the sequence information of the binding pocket-proximal nucleotides, this database allows for a detailed search of all combinations of potential ligands and of coordination environments of metal ions. MINAS is therefore a perfect new tool to classify metal ion binding pockets in nucleic acids by statistics and to draw general conclusions about the different coordination properties of these ions. This record has been marked as Uncertain because the homepage for this resource is no longer active, and we have not been able to get in touch with the owners of the resource. Please contact us if you have any information regarding MINAS.
FAIRsharing.wqy605	Ontology Metadata Vocabulary	OMV	A standard for ontology metadata; a vocabulary of terms and definitions describing ontologies which specifies reusability-enhancing ontology features for human and machine processing purposes.
FAIRsharing.wqyw8s	Interrupted coding sequences	ICDS	ICDS database is a database containing ICDS detected by a similarity-based approach. The definition of each interrupted gene is provided as well as the ICDS genomic localisation with the surrounding sequence.
FAIRsharing.ws7cgw	Influenza Research Database	IRD	The Influenza Research Database (IRD) is a free, open, publicly-accessible resource funded by the U.S. National Institute of Allergy and Infectious Diseases through the Bioinformatics Resource Centers program. IRD provides a comprehensive, integrated database and analysis resource for influenza sequence, surveillance, and research data, including user-friendly interfaces for data retrieval, visualization, and comparative genomics analysis, together with personal login- protected ‘workbench’ spaces for saving data sets and analysis results. IRD integrates genomic, proteomic, immune epitope, and surveillance data from a variety of sources, including public databases, computational algorithms, external research groups, and the scientific literature.
FAIRsharing.wstthd	CONSOlidated Standards of Reporting Trials - Official Extensions	CONSORT - OE	The main CONSORT Statement is based on the "standard" two-group parallel design. However, there are several variations to the standard trial methodology, including different design aspects (e.g., cluster), interventions (e.g., herbals) and data (e.g., harms). To help improve the reporting of these trials the main CONSORT Statement has been extended and modified by members of the CONSORT group for application in these various areas.
FAIRsharing.wUoZKE	Research Object Crate	RO-Crate	RO-Crate is a community effort to establish a lightweight approach to packaging research data with their metadata. It is based on schema.org annotations in JSON-LD, and aims to make best-practice in formal metadata description accessible and practical for use in a wide variety of situations. An RO-Crate is a structured archive of all the items that contributed to the research outcome, including their identifiers, provenance, relations and annotations.
FAIRsharing.wv5q9d	ProtoNet	ProtoNet	This resource is a hierarchical clustering of UniProt protein sequences into hierarchical trees. This resource allows for the study of sub-family and super-family of a protein, using UniRef50 clusters.
FAIRsharing.wvdvwp	Electron Microscope Exchange Initiative	EMX	The Electron Microscopy Exchange (EMX) format is a standard for metadata exchange in 3D electron microscopy.
FAIRsharing.wvgta9	Hierarchical Data Format	HDF5	HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
FAIRsharing.WWI10U	The FAIR Principles	FAIR	One of the grand challenges of data-intensive science is to facilitate knowledge discovery by assisting humans and machines in their discovery of, access to, integration and analysis of, task-appropriate scientific data and their associated algorithms and workflows. The term "FAIR" was launched at a Lorentz workshop in 2014, attended by a wide range of academic, corporate, and governmental stakeholders. The resulting draft FAIR Principles were initially made available for public comment via the websites of peer-initiatives such as, for example, Force11. Based on this feedback, the final Principles were published in 2016 (https://www.nature.com/articles/sdata201618).  FAIR is a set of guiding principles to make data Findable, Accessible, Interoperable, and Re-usable. These guidelines provide advice for those wishing to enhance the (re)usability of their data holdings. Distinct from peer initiatives that focus on the human scholar, the FAIR Principles put specific emphasis on enhancing the ability of machines to automatically find and use the data, in addition to supporting its reuse by individuals.
FAIRsharing.wx1yak	MitoMiner	MitoMiner	MitoMiner is an integrated data warehouse of mammalian localisation evidence, phenotypes and diseases. This data has been integrated to allow the creation of sophisticated data mining queries spanning many different sources. It is primarily concerned with data for mammals, zebrafish and yeasts.
FAIRsharing.wxh9gn	MycoBrowser smegmatis	None	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.
FAIRsharing.wy4egf	Zenodo	Zenodo	Zenodo is a generalist research data repository built and developed by OpenAIRE and CERN. It was developed to aid Open Science and is built on open source code. Zenodo helps researchers receive credit by making the research results citable and through OpenAIRE integrates them into existing reporting lines to funding agencies like the European Commission. Citation information is also passed to DataCite and onto the scholarly aggregators. Content is available publicly under any one of 400 open licences (from opendefinition.org and spdx.org). Restricted and Closed content is also supported. Free for researchers below 50 GB/dataset. Content is both online on disk and offline on tape as part of a long-term preservation policy. Zenodo supports managed access (with an access request workflow) as well as embargoing generally and during peer review. The base infrastructure of Zenodo is provided by CERN, a non-profit IGO. Projects are funded through grants.
FAIRsharing.wYScsE	Minimum Information about Animal Toxicology Experiments In Vivo	MIATE/invivo	MIATE/invivo defines a minimum set of metadata requirements for an in vivo animal toxicology experiment and recommended ontologies. It is intended to standardize (meta)data collection for traditional in vivo toxicology study designs.
FAIRsharing.wyz5he	Conformation Angles Database	CADB	Conformation Angles DataBase [ CADB-3.0 ] is a comprehensive, authoritative and timely knowledge base developed to facilitate retrieval of information related to the conformational angles (main-chain and side-chain) of the amino acid residues present in the non-redundant (both 25% and 90%) data set.
FAIRsharing.wz1w7t	Minimum Information About a Spinal Cord Injury experiment	MIASCI	Standards for “Minimum Information about a Animal Spinal Cord Injury Experiment” (MIASCI) facilitates bioinformatic efforts and allow investigators to more accurately replicate and extend studies.
FAIRsharing.wzp79x	Big Chain	bigChain	The bigChain format describes a pairwise alignment that allow gaps in both sequences simultaneously, just as chain files do; however, bigChain files are compressed and indexed as bigBeds. Chain files are converted to bigChain files using the program bedToBigBed, run with the -as option to pull in a special autoSql (.as) file that defines the fields of the bigChain.
FAIRsharing.x05a9p	thesaurus alternativa	thealternativa	No information can currently be found about thesaurus alternativa. If you know more about this taxonomy, please do not hesitate to contact us.
FAIRsharing.x0dzdt	Type IV Secretion system Resource	SecReT4	A web-based bacterial type IV secretion system resource for type IV secretion systems (T4SSs) and cognate effectors in bacteria.
FAIRsharing.X0q5BG	Ciona robusta Anatomy and Development Ontology	None	The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental tables.
FAIRsharing.x13tv8	Santa Barbara Coastal Observation Ontology	OBOE SBC	Extensible Observation Ontology for the Santa Barbara Coastal Long Term Ecological Research project (SBC-LTER). OBOE SBC extends core concepts defined in the OBOE suite that are particular to the Santa Barbara Coastal Long Term Ecological Research project's data collection activities. These include specific measurement protocols, sites, etc. This is mean as a case study ontology for the Semtools project.
FAIRsharing.x16th8	RTPrimerDB	RTPrimerDB	RTPrimerDB is a public database for primer and probe sequences used in real-time PCR assays employing popular chemistries (SYBR Green I, Taqman, Hybridisation Probes, Molecular Beacon) to prevent time-consuming primer design and experimental optimisation, and to introduce a certain level of uniformity and standardisation among different laboratories.
FAIRsharing.x18jh7	HaploReg	HaploReg	HaploReg is a tool for exploring annotations of the noncoding genome at variants on haplotype blocks, such as candidate regulatory SNPs at disease-associated loci. Using LD information from the 1000 Genomes Project, linked SNPs and small indels can be visualized along with chromatin state and protein binding annotation from the Roadmap Epigenomics and ENCODE projects, sequence conservation across mammals, the effect of SNPs on regulatory motifs, and the effect of SNPs on expression from eQTL studies. HaploReg is designed for researchers developing mechanistic hypotheses of the impact of non-coding variants on clinical phenotypes and normal variation.
FAIRsharing.x1ar7v	MIAPE: Gel Electrophoresis	MIAPE-GE	This module identifies guidelines for the minimum information to report about the use of n- dimensional gel electrophoresis in a proteomics experiment.
FAIRsharing.x1f1l4	FAIR Maturity Indicator Gen2-MI-F4	None	The FAIR Maturity Indicator Gen2-MI-F4 measures the degree to which the digital resource can be found using web-based search engines.
FAIRsharing.X2qqiE	Minimum information for publication of microplastics studies	MIMS	This guideline focuses on components to report in seafood studies for microplastic research.
FAIRsharing.x2vch3	Virulence Factor Database	VFDB	VFDB is an integrated and comprehensive database of virulence factors for bacterial pathogens (also including Chlamydia and Mycoplasma).
FAIRsharing.x38D2k	BioImage Archive	BioImage Archive	The BioImage Archive stores and distributes biological images that are useful to life-science researchers. Its development will provide data archiving services to the broader bioimaging database community. This includes added-value bioimaging data resources such as EMPIAR, Cell-IDR and Tissue-IDR.
FAIRsharing.x3hgaw	World Data Center for Climate at DRKZ	WDCC	The World Data Center Climate (WDCC) at the German Climate Computing Center (DKRZ: Deutsches Klimarechenzentrum GmbH) is part of an international effort to set up domain specific data portals as a service for the scientific community. The WDCC provides a long-term archiving service for large climate or Earth System research data sets. This service includes archiving and retrieval capability of data for time periods of 10 years or longer.  The WDCC focuses on climate and climate-related data products, specifically those resulting from climate simulations. Metadata and research data in WDCC is curated in collaboration with the data providers. Data in WDCC is citable and can be directly integrated into scientific publications.
FAIRsharing.x4zrrg	VertNet IPT	VertNet IPT	VertNet uses the Integrated Publishing Toolkit (IPT) to host published biodiversity data on the VertNet IPT for its participating institutions. The IPT is a free, open source web application designed to publish primary occurrence data, species checklists and taxonomies, and associated dataset metadata available for use on the Internet. Data are published as web-based Darwin Core Archives (simple ZIP files that contain tab-delimited or comma-separated text files organized using the Darwin Core Standard).
FAIRsharing.x54ymh	Streptococcus agalactiae NEM316 / Serotype III genome database	SagaList	SagaList contains a database dedicated to the analysis of the genomes of the food-borne pathogen, Streptococcus agalactiae.
FAIRsharing.x5f7dq	RNAiDB	RNAiDB	RNAiDB provides access to results from RNAi interference studies in C. elegans , including images, movies, phenotypes, and graphical maps.
FAIRsharing.x68mjp	Publications at Bielefeld University	PUB	Publications at Bielefeld University (PUB) is the institutional repository of Bielefeld University and preserves the scholarly output of its members. Operated by Bielefeld University Library, PUB provides open access to Bielefeld's scholarly publications and research data in accordance with Bielefeld University's open access and research data resolutions. PUB also collects digital theses. With more than 50,000 publications, PUB is the most comprehensive bibliography on scholarly activities at Bielefeld University. Faculty and researchers self-archive full texts when possible. As a plus, PUB cross-references leading indexing services and disciplinary archives such as the Web of Science, CrossRef, PubMed, Europe PubMed Central, arXiv or INSPIRE HEP.
FAIRsharing.x68yjk	CARRE Risk Factor ontology	CARRE	Clinical risk factors, evidence and observables
FAIRsharing.x6d6sx	Bgee DataBase for Gene Expression Evolution	Bgee	Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.
FAIRsharing.x6dcc7	Minimum Information about an ENVironmental transcriptomic experiment	MIAME/Env	MIAME defines a conceptual structure for defining the core information that is common to most microarray experiments. MIAME/Env is an extension of these guidelines to cover environmental genomics.
FAIRsharing.x6nr7d	Tropical Data Hub	TDH	The Tropical Data Hub (TDH) is an open portal enabling researchers to submit information relating to the tropics in an open and collaborative way. The TDH complements existing data repositories and will come to be acknowledged as the definitive source of information relating to the tropics, both within Australia and internationally. The information available through within the TDH relates to the physical and natural environment, societies and communities (e.g. linguistic and cultural data), and economies. The use of metadata will ensure that the TDH is readily accessible to governments, researchers and the business sector.
FAIRsharing.x6sgd3	Body System	Body System	This is a set of body-system terms used in the ICD 11 revision
FAIRsharing.x6y19r	Citrination	Citrination	Citrination is an open database and analytics platform for material and chemical information. Registration is required to access all data, but is free for academics, researchers and other non-commercial users.
FAIRsharing.x7nef0	Minimum Information Model for Dielectric Measurements of Biological Tissues	MINDER	The dielectric properties of biological tissues quantify the interaction of electromagnetic fields with the body. Specifically, the dielectric properties include the relative permittivity and conductivity. These properties are different for each tissue, and vary with temperature and frequency. This standard is for data and metadata collection of dielectric data, in order to facilitate accurate and repeatable measurements.
FAIRsharing.x7pwnw	short Open Reading Frame database	sorfs.org	sORFs.org is a database for sORFs identified using ribosome profiling. Starting from ribosome profiling, sORFs.org identifies sORFs, incorporates state-of-the-art tools and metrics and stores results in a public database. Two query interfaces are provided, a default one enabling quick lookup of sORFs and a BioMart interface providing advanced query and export possibilities. At present, sORFs.org harbors 263 354 sORFs that demonstrate ribosome occupancy, originating from three different cell lines: HCT116 (human), E14_mESC (mouse) and S2 (fruit fly).
FAIRsharing.x80z26	The Cardiovascular Research Grid	CVRG	The CardioVascular Research Grid (CVRG) project is creating an infrastructure for sharing cardiovascular data and data analysis tools. CVRG tools are developed using the Software as a Service model, allowing users to access tools through their browser, thus eliminating the need to install and maintain complex software.
FAIRsharing.x8rkjt	MIAPE: Column Chromatography	MIAPE-CC	MIAPE - Column Chromatography (MIAPE-CC) is one module of the Minimal Information About a Proteomics Experiment (MIAPE) documentation system. MIAPE is developed by the Proteomics Standards Initiative of the Human Proteome Organisation (HUPO-PSI). It aims at delivering a set of technical guidelines representing the minimal information required to report and sufficiently support assessment and interpretation of a proteomics experiment. This MIAPE-CC module is the result of work carried out through the Sample Processing Workgroup of the Proteome Standards Initiative. It has been designed to specify a minimal set of information to document a column chromatography experiment.
FAIRsharing.x8xt3k	PhosphoSite Plus	PSP	PhosphoSite Plus provides extensive information on mammalian post-translational modifications (PTMs). The resource supersedes PhosphoSite a mammalian protein database that provides information about in vivo phosphorylation sites.
FAIRsharing.x93ckv	Stanford Microarray Database	SMD	The Stanford Microarray Database is a repository a microarray based gene expression and comparative genomics data. This resource is no longer being maintained please us public repositories NCBI Gene Expression Omnibus or EBI Array Express
FAIRsharing.x964fb	MicroArray Gene Expression Markup Language	MAGE-ML	This document is a standard that addresses the representation of gene expression data and relevant annotations, as well as mechanisms for exchanging these data. The field of gene expression experiments has several distinct technologies that a standard must include (e.g., single vs. dual channel experiments, cDNA vs. oligonucleotides). Because of these different technologies and different types of gene expression experiments, it is not expected that all aspects of the standard will be used by all organizations. With the acceptance of XML Metadata Interchange as an OMG standard it is possible to specify a normative UML model using a tool such as Rational Rose that describes the data structures for Gene Expression/
FAIRsharing.x9k6a1	bigWig Track Format	None	The bigWig format is for display of dense, continuous data that will be displayed in the Genome Browser as a graph. The bigWig files are in an indexed binary format. The main advantage of this format is that only those portions of the file needed to display a particular region are transferred to the Genome Browser server. Because of this, bigWig files have considerably faster display performance than regular wiggle files when working with large data sets. The bigWig file remains on your local web-accessible server (http, https or ftp), not on the UCSC server, and only the portion needed for the currently displayed chromosomal position is locally cached as a "sparse file".
FAIRsharing.x9rqf7	Incorporated Research Institutions for Seismology Data	IRIS Data	IRIS provides management of, and access to, observed and derived data for the global earth science community. IRIS membership comprises virtually all US universities with research programs in seismology, and is dedicated to the operation of science facilities for the acquisition, management, and distribution of seismological data. IRIS programs contribute to scholarly research, education, earthquake hazard mitigation, and verification of the Comprehensive Nuclear-Test-Ban Treaty.
FAIRsharing.x9s8e	Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology	RPO	The Resource of Asian Primary Immunodeficiency Diseases (RAPID) Phenotype Ontology (RPO) is a controlled vocabulary for phenotypic terms for primary immunodeficiency diseases (PIDs) used within the RAPID database. It is intended to facilitate global sharing and free exchange of PID data with users’ communities. Please note that, while available via BioPortal, the RAPID phenotype ontology is no longer being updated.
FAIRsharing.Xb3LBL	Population Health Data Archive	PHDA	The National Population Health Data Center (NPHDC) is one of the 20 national science data center approved by the Ministry of Science and Technology and the Ministry of Finance. The Population Health Data Archive (PHDA) is developed by NPHDC relying on the Institute of Medical Information, Chinese Academy of Medical Sciences. PHDA mainly receives scientific data from science and technology projects supported by the national budget, and also collects data from other multiple sources such as medical and health institutions, research institutions and social individuals, which is oriented to the national big data strategy and the healthy China strategy. The data resources cover basic medicine, clinical medicine, public health, traditional Chinese medicine and pharmacy, pharmacy, population and reproduction. PHDA supports data collection, archiving, processing, storage, curation, verification, certification and release in the field of population health. Provide multiple types of data sharing and application services for different hierarchy users and help them find, access, interoperate and reuse the data in a safe and controlled environment. PHDA provides important support for promoting the open sharing of scientific data of population health and domestic and foreign cooperation.
FAIRsharing.xbg0xd	eXtensible Experiment Markup Language	XEML	The eXtensible Experiment Markup Language (XEML) is a XML dialect. The language provides a flexible way to formulate experimental setups, encompassing information about environmental parameters in a continuous timeline, individual germplasm information, sampling structure and handling from specified plant material, sample data mapping to heterogeneous databases and general annotations.
FAIRsharing.xbvhg2	Scalable Vector Graphics	SVG	Scalable Vector Graphics (SVG) Version 1.1, a modularized language for describing two-dimensional vector and mixed vector/raster graphics in XML.
FAIRsharing.xcvp6a	Extracellular RNA Atlas	exRNA Atlas	The exRNA Atlas is the data and metadata repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline. ERCC-developed quality metrics are uniformly applied to the datasets. The exRNA Atlas accepts submissions for RNA-seq or qPCR data.
FAIRsharing.xd3wmy	Environmental Data Initiative Data Portal	EDI Data Portal	The Environmental Data Initiative is an NSF-funded project meant to accelerate curation and archive of environmental data. With mature repository functionality and data curators on staff it supports the large and varied community of environmental researchers. The repository is open to all environmental research data and hosts data that provide a context to evaluate the nature and pace of ecological change, to interpret its effects, and to forecast the range of future biological responses to change. DOIs are assigned making all datasets first class, citable research objects and strict version control allows for immutability while also supporting updates to long-term datasets.
FAIRsharing.xeh248	Ontology for Genetic Disease Investigations	OGDI	This ontology is used to model scientific investigation, especially Genome-Wide Association Studies (GWAS), to discover genetic susceptibility factors to disease, such as Diabetes. It models the genetic variants, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes: Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism (OGMD). Together, these three ontologies form the Ontology for Genetic Susceptibility Factor (OGSF), which is the project where information about this ontology is stored.
FAIRsharing.xFI5ob	Propylaeum@heiDATA	Propylaeum@heiDATA	Propylaeum@heiDATA is the research data repository of Propylaeum (Specialized Information Service Classics). It provides classical scholars with the opportunity to archive their research data permanently in connection with an open access online publication (e.g. article, ejournal, ebook) hosted by Heidelberg University Library. All research data e.g. images, videos, audio files, tables, graphics receive a DOI (Digital Object Identifier). The data publications can be cited, viewed and permanently linked to as distinct academic output.
FAIRsharing.xfje21	Metagenome Sample Vocabulary	MSV	An ontology for metagenome sample metadata. This ontology mainly defines predicates.
FAIRsharing.XfpPv7	History and Sciences of Religions Vocabulary	None	Controlled vocabulary used for indexing bibliographical records for the "History and Sciences of Religions" FRANCIS database (1972-2015). It consists of 4579 entries available in 3 languages (English, French, and Spanish).
FAIRsharing.xfrgsf	Metabolomics Workbench	MW	The Metabolomics Workbench serves as a national and international repository for metabolomics data and metadata and provides analysis tools and access to metabolite standards, protocols, tutorials, training, and more.
FAIRsharing.xfUA7e	Determination of Ectomycorrhizae	DEEMY	DEEMY collects descriptive data on ectomycorrhizae, including extant character descriptions and definitions. Ectomycorrhizae are mutualistic structures formed by fungi and the roots of forest trees. They are predominantly found in the temperate and boreal climate zones but occur also in humid tropic regions, as well as in soils of poor nutrition. Without mycorrhizae, trees would not be able to take up water and minerals. Ectomycorrhizae show a wide range of anatomical diversity which represents their possible function in tree nutrition and ecology. Their anatomical data, in general, allow a quick determination and provide at the same time ecologically important information about possible functions for tree nutrition.
FAIRsharing.xfz72j	Economic Botany Data Collection Standard	EBDCS	This standard provides a system whereby uses of plants (in their cultural context) can be described, using standardised descriptors and terms, and attached to taxonomic data sets. It resulted from discussions at the International Working Group on Taxonomic Databases for Plant Sciences (TDWG) between 1989 and 1992. Users and potential users of the standard include: economic botanists and ethnobotanists whose purpose is to record all known information about the uses of a taxon; educationalists, taxonomists, biochemists, anatomists etc. who wish to record plant use, often at a broad level; economic botany collection curators who need to describe accurately the uses and values of specimens in their collections; bibliographers who need to describe plant uses referred to in publications and to apply keywords consistently for ease of data retrieval. While this standard is still in use, it is no longer actively maintained (labelled as prior on the TDWG website).
FAIRsharing.xg0685	Diagnostic Ontology	None	The Diagnostic Ontology is a computational diagnostic ontology containing 91 elements, including classes and sub-classes, which are required to conduct Systematic Reviews - Meta Analysis (SR-MA) for diagnostic studies, which will assist in standardized reporting of diagnostic articles. SR-MA are studies that aggregate several studies to come to one conclusion for a particular research question.
FAIRsharing.xhpn6z	Botryllus schlosseri anatomy and development ontology	BSAO	The Botryllus schlosseri Ontology of Development and Anatomy (BODA) is the first ontology describing the anatomy and the development of Botryllus schlosseri. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this organism. BODA features allow the users to easily search and identify anatomical structures in the colony, to define the developmental stage, and to follow the morphogenetic events of a tissue and/or organ of interest throughout asexual development.
FAIRsharing.xhxe2j	e-Mouse Atlas	EMA	The e-Mouse Atlas (EMA) is a detailed model of the developing mouse. Its purpose is not only to provide information about the shape, gross anatomy and detailed histological structure of the mouse, but also to provide a framework into which information about gene function can be mapped. The spatial, temporal and anatomical integration achieved by mapping diverse data to the organism itself rather than simply to database tables, allows powerful computational analyses. The website presents 3D volumetric models of the embryo linked, in most cases, to comprehensive and detailed images of histological structure. The embryo models and anatomy in EMA are organized by standard developmental stage (TS. after Theiler, 1989) and age of the embryo in days post coitum (dpc.). Gene-expression and other image data is also available.
FAIRsharing.xhzfk0	National Archive of Computerized Data on Aging	NACDA	The National Archive of Computerized Data on Aging (NACDA), located within ICPSR, is funded by the National Institute on Aging. NACDA's mission is to advance research on aging by helping researchers to profit from the under-exploited potential of a broad range of datasets. NACDA acquires and preserves data relevant to gerontological research, processing as needed to promote effective research use, disseminates them to researchers, and facilitates their use. By preserving and making available the largest library of electronic data on aging in the United States, NACDA offers opportunities for secondary analysis on major issues of scientific and policy relevance.
FAIRsharing.XIxciC	U.S. Antarctic Program Data Center	USAP-DC	The U.S. Antarctic Program Data Center (USAP-DC) provides a central USAP Project Catalog for all projects funded by the NSF Antarctic program and a Data Repository for research datasets derived from these projects. Data managed include the NSF research related glaciology data collection formerly managed through NSIDC. Datasets are registered in the Antarctic Master Directory to comply with the Antarctic Treaty and represent the U.S. in Scientific Committee on Antarctic Research (SCAR) activities.
FAIRsharing.xj5egt	BIBFRAME 2.0	BIBFRAME	Initiated by the Library of Congress, BIBFRAME provides a foundation for the future of bibliographic description, both on the web, and in the broader networked world. This site presents general information about the project, including presentations, FAQs, and links to working documents. In addition to being a replacement for MARC, BIBFRAME serves as a general model for expressing and connecting bibliographic data. A major focus of the initiative will be to determine a transition path for the MARC 21 formats while preserving a robust data exchange that has supported resource sharing and cataloging cost savings in recent decades.
FAIRsharing.xj7m8y	Natural Environmental Research Council Data Catalogue Service	NERC Data Catalogue Service	A compendium of the United Kingdom's largest repository of Environmental and Earth Science data.
FAIRsharing.xjj977	Influenza Ontology	FLU	The influenza ontology is an application ontology. Consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS).
FAIRsharing.xjx7vy	LINCS Extended Metadata Standard: Proteins	LINCS 2: Proteins	LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are focused on the minimum required information to model LINCS assays and results and have been recommended by LINCS for adoption beyond the LINCS project. A standardized description of protein reagents is critical to link results of different LINCS assay types. Protein reagents need to be identified in a manner that enables screening results associated with a specific protein reagent (e.g., KINOMEscan) to be linked with data obtained by other assays in which that protein participates as a (material) component (e.g., in a cell-based assay readout via the L1000 transcript profiling method).
FAIRsharing.xk98ez	NimbleGen Gene Description	None	The NimbleGen Gene Description is a text tabular format that contains descriptive information (annotation) about the genes on an array. Please note that Roche issued a statement in 2012 as follows: "As previously announced in June 2012, Roche has exited the DNA microarray business. All products and services for NimbleGen CGH, ChIP-chip, DNA Methylation, AccuSNP, CGS, and Gene Expression microarrays and their associated workflows are no longer available from Roche" (Source: http://genomics.nd.edu/nimblegen-microarrays).
FAIRsharing.xm7tkj	Nuclear Magnetic Resonance Controlled Vocabulary	nmrCV	nmrCV is a MSI-sanctioned NMR controlled vocabulary, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with standardized meaningful data descriptors. This CV is the successor of the (now deprecated) 'NMR-instrument specific component of metabolomics investigations' CV of 2006. This standard is currently financed via the PhenoMeNal EU project. It is a simple taxonomy build according to the same design principles as its role model artefact, the Mass Spec CV of PSI.
FAIRsharing.xMmOCL	CORE	CORE	CORE’s mission is to aggregate all open access research outputs from repositories and journals worldwide and make them available to the public. In this way CORE facilitates free unrestricted access to research for all. CORE supports the right of citizens and the general public to access the results of research towards which they contributed by paying taxes; facilitates access to open access content for all by offering services to general public, academic institutions, libraries, software developers, researchers, etc.; provides support to both content consumers and content providers by working with digital libraries, institutional and subject repositories and journals, ; enriches the research content using state-of-the-art technology and provides access to it through a set of services including search, API and analytical tools, ; contributes to a cultural change by promoting open access, a fast growing movement.
FAIRsharing.xmmsmr	Epigenome Ontology	EGO	The Epigenome Ontology (EGO) a biomedical ontology for integrative epigenome knowledge representation and data analysis.
FAIRsharing.xnkbk	HRB Open Research	None	This is a non-exhaustive list of databases, standards, and policies that have been approved for an HRB Open Research article.
FAIRsharing.XO6ppp	EBRAINS	EBRAINS	EBRAINS is a platform for sharing brain research data ranging in type as well as spatial and temporal scale. The EBRAINS data curation service aims to provide maximum impact, visibility, reusability, and longevity. The user interface of the EBRAINS Knowledge Graph allows you to easily find data of interest. EBRAINS hosts a wide range of data types and models from different species. All data are well described and can be accessed immediately for further analysis.
FAIRsharing.xp1x9c	Ascidian Network for In Situ Expression and Embryological Data	ANISEED	ANISEED is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, spatial gene expression, protein annotation), of the cell (cell shapes, fate, lineage) or of the whole embryo (anatomy, morphogenesis).
FAIRsharing.XrXzcm	EMODnet Physics	EMODnet Physics	EMODnet-Physics map portal (www.emodnet-physics.eu/map) provides a single point of access to validated in situ datasets, products and their physical parameter metadata of European Seas and global oceans.
FAIRsharing.xs4ge6	Brucellosis Ontology	IDOBRU	The Brucellosis Ontology is an extension of the Infectious Disease Ontology. It is a biomedical ontology describing the zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular bacterium. The ontology is intended as an aid in brucellosis-related data standardization and integration.
FAIRsharing.xshwbf	Sanger Pfam Mirror	Sanger Pfam	The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.
FAIRsharing.xtq1xf	TIGRFAMs	TIGRFAMs	TIGRFAMs is a collection of manually curated protein families focusing primarily on prokaryotic sequences.It consists of hidden Markov models (HMMs), multiple sequence alignments, Gene Ontology (GO) terminology, Enzyme Commission (EC) numbers, gene symbols, protein family names, descriptive text, cross-references to related models in TIGRFAMs and other databases, and pointers to literature. Originally developed at The Institute for Genomic Research (TIGR) and later at its successor, the J. Craig Venter Institute (JCVI), it is now maintained by the NCBI.
FAIRsharing.xUkfh7	Mitochondrial Disease Sequence Data Resource	MSeqDR	The Mitochondrial Disease Sequence Data Resource (MSeqDR) is a centralized genome and phenome bioinformatics resource built by the mitochondrial disease community to facilitate clinical diagnosis and research investigations of individual patient phenotypes, genomes, genes, and variants. It integrates community knowledge from expert‐curated databases with genomic and phenotype data shared by clinicians and researchers.
FAIRsharing.XuvIC0	Open Provenance Model for Workflows Ontology	OPMW-PROV	OPMW is an ontology for describing workflows based on the Open Provenance Model. It has been designed as a profile for OPM, extending and reusing OPM's core ontologies OPMV (OPM-Vocabulary) and OPMO (OPM-Ontology). Since the publication of the PROV-O standard, the ontology also extends the W3C recommendation. The OPMW profile was originally created as an extension of OPM to represent abstract workflows in addition to workflow execution traces. This requirement was motivated by the goal of publishing workflows of scientific articles.
FAIRsharing.xVAQX9	ERN common data elements	None	Semantic data model of the set of common data elements for rare disease registration. To make rare disease registry data Interoperable (the 'I' in FAIR). Version 2.0. License CC0. Here, we present a semantic data model of the set of common data elements for rare diseases registration recommended by the European commission joint research centre. There are 16 data elements: ‘Pseudonym’, ‘Date of Birth’, ‘Sex’, ‘Patient’s status’, ‘Date of death’, ‘First contact with specialised centre’, ‘Age at onset’, Age at diagnosis’, ‘Diagnosis of the rare disease’, ‘Genetic diagnosis’, ‘Undiagnosed case’, ‘Agreement to be contacted for research purposes’, ‘Consent to the reuse of data’, ’Biological sample’, ‘Link to a biobank’, ‘Classification of functioning/disability’. The semantic data model is presented in 11 modules describing the different 16 data elements. Central to each module is the 'person'. Each module has in addition different characteristics assigned to the person.
FAIRsharing.xvash1	Flexible Image Transport System	FITS	This standard defines a digital file format useful for storage, transmission and processing of scientific and other images in astronomy. Unlike many image formats, FITS is designed specifically for scientific data and hence includes many provisions for describing photometric and spatial calibration information, together with image origin metadata. A major feature of the FITS format is that image metadata is stored in a human-readable ASCII header, so that an interested user can examine the headers to investigate an archived file of unknown provenance.
FAIRsharing.xvf5y3	Darwin Core	DwC	Darwin Core (DwC) is a vocabulary that includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to facilitate the sharing of information about biological diversity by providing identifiers, labels, and definitions. The Darwin Core is primarily based on the observation, specimen and samples of taxa. The Darwin Core standard is comprised of one vocabulary (the Darwin Core vocabulary), and six associated documents. The vocabulary itself is composed of four term lists: Darwin Core terms borrowed from the Dublin Core legacy and terms namespace, Darwin Core IRI-value Term Analogs, and the core terms defined by Darwin Core.
FAIRsharing.xvfqAC	Open Databases Integration for Materials Design	OPTIMADE	Designing new materials suitable for specific applications is a long, complex, and costly process. Researchers think of new ideas based on intuition and experience. Their synthesis and evaluation require a tremendous amount of trial and error. In the last few years, there has been a major game change in materials design. Thanks to the exponential growth of computer power and the development of robust first-principles electronic structure codes, it has become possible to perform large sets of calculations automatically. This is the burgeoning area of high-throughput ab initio computation. Such calculations have been used to create large databases containing the calculated properties of existing and hypothetical materials, many of which have appeared online: - the AFLOW distributed materials property repository - the Harvard Clean Energy Project Database - the Materials Cloud - the Materials Project - the NoMaD (Novel Materials Discovery) Repository - the Open Quantum Materials Database - the Computational Materials Repository - the Data Catalyst Genome - the Materials Platform for Data Science - the Joint Automated Repository for Various Integrated Simulations … The Open Databases Integration for Materials Design (OPTIMADE) consortium aims to make materials databases interoperational by developing a common REST API.
FAIRsharing.xvsv9z	Biospecimen Reporting for Improved Study Quality	BRISQ	The Biospecimen Reporting for Improved Study Quality (BRISQ) recommendations outlined are intended to apply to any study in which human biospecimens are used. The BRISQ guidelines are proposed as an important and timely resource tool to strengthen communication and publications around biospecimen-related research and help reassure patient contributors and the advocacy community that the contributions are valued and respected.
FAIRsharing.xw1wj5	Immune Tolerance Network TrialShare	TrialShare	The immune tolerance data management and visualization portal for studies sponsored by the Immune Tolerance Network (ITN) and collaborating investigators. Data from published studies are accessible to any user; data from current in-progress studies are accessible to study investigators and collaborators. Includes links to published figures, tools for visualization and analysis of data, and ability to query study data by subject, group, or any other study parameter.
FAIRsharing.xwexs	American Society for Biochemistry and Molecular Biology - Molecular and Cellular Proteomics - Resources for Authors	ASBMB - MCP Policy	The mission of Molecular and Cellular Proteomics is to foster the development and applications of proteomics in both basic and translational research. The Resources for Authors document contains guidelines and requirements for authors submitting manuscripts to the journal. Information on data deposition and standardization prior to manuscript submission is available from a number of guidelines linked from this document. Authors of accepted papers containing nucleotide sequences must submit the sequence data to approved repositories. Authors of papers describing new structure determinations must submit to the Protein Data Bank. Authors are encouraged to place raw data from clinical proteomics in publicly accessible database storage sites. Annotated spectra must be provided for proteins identified on the basis of single peptide and post-translationally modified peptides.
FAIRsharing.xwnZRC	Advanced Genetics	None	A list of the biological repositories and standards recommended by the Wiley journal, Advanced Genetics (formerly Genetics & Genomics Next).
FAIRsharing.xx2wv5	Pharmacogenomics Ontology	PharmGKB-owl	The PharmGKB Ontology imports genetic sequence data, collected in relational format, into the OWL, and aims to automate the process of updating the links between the ontology and data acquisition when the ontology changes. They have linked PharmGKB with data acquisition from a relational model of genetic sequence information.
FAIRsharing.xxdxtv	Human Proteinpedia	None	Human Proteinpedia is a community portal for sharing and integration of human protein data. It allows research laboratories to contribute and maintain protein annotations.
FAIRsharing.xxtmjs	Melanoma Molecular Map Project	MMMP	A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.
FAIRsharing.XYFbZD	Human Diseases Thesaurus	None	The Human Diseases Thesaurus describes human diseases, and is part of the Medicine vocabulary used from 1972 to 2015 for indexing bibliographical records in the now-archived PASCAL database (http://pascal-francis.inist.fr/). It is available in English and French.
FAIRsharing.xyj0nr	Cognitive Paradigm Ontology	CogPO	This ontology is used to describe the experimental conditions within cognitive/behavioral experiments, primarily in humans. CogPO is a framework for the formal representation of the cognitive paradigms used in behavioral experiments, driven by cognitive neuroscience and neuroimaging examples.
FAIRsharing.xypv6g	ViBE-Z: The Virtual Brain Explorer for Zebrafish	ViBE-Z	ViBE-Z, the Virtual Brain Explorer for Zebrafish is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. ViBE-Z contains a database with precisely aligned gene expression patterns (1um 3 resolution), an anatomical atlas, and a software. This software creates high-quality data sets by fusing multiple confocal microscopic image stacks, and aligns these data sets to the standard larva.
FAIRsharing.y0df7m	Inter-university Consortium for Political and Social Research	ICPSR	ICPSR is a data archive of behavioral and social science research data. An international consortium of more than 750 academic institutions and research organizations, ICPSR provides leadership and training in data access, curation, and methods of analysis for the social science research community. ICPSR is a CoreTrustSeal core certified repository and was a 2019 United States National Medal for Museum and Library Service recipient, the nation’s highest honor given to museums and libraries that make significant and exceptional contributions to their communities.
FAIRsharing.y0fDAA	Data Access Layer Interface	DALI	The Data Access Layer Interface (DALI) standard defines the base web service interface common to all Data Access Layer (DAL) services. This standard defines the behaviour of common resources, the meaning and use of common parameters, success and error responses, and DAL service registration. The goal of this specification is to define the common elements that are shared across DAL services in order to foster consistency across concrete DAL service specifications and to enable standard re-usable client and service implementations and libraries to be written and widely adopted.
FAIRsharing.y0kqgt	Library of Congress Medium of Performance Thesaurus for Music	LCMPT	The Library of Congress Medium of Performance Thesaurus (LCMPT) for Music is a stand-alone vocabulary that provides terminology to describe the instruments, voices, etc., used in the performance of musical works. The core terms in LCMPT are based chiefly on existing LC subject headings (LCSH), but some additional terms that do not already appear in LCSH have also been included.
FAIRsharing.y1qpdm	caNanoLab	caNanoLab	caNanoLab is a data sharing portal designed to facilitate information sharing across the international biomedical nanotechnology research community to expedite and validate the use of nanotechnology in biomedicine. caNanoLab provides support for the annotation of nanomaterials with characterizations resulting from physico-chemical, in vitro and in vivo assays and the sharing of these characterizations and associated nanotechnology protocols in a secure fashion.
FAIRsharing.y2dt83	Cell Behavior Ontology	CBO	The Cell Behavior Ontology (CBO) describes multi-cell computational models. In particular to describe both the existential behaviors of cells (spatiality, growth, movement, adhesion, death, ...) and computational models of those behaviors.
FAIRsharing.y2vm4r	Taiwan Biodiversity Information Facility IPT - GBIF Taiwan	TaiBIF IPT - GBIF Taiwan	TaiBIF (Taiwan Biodiversity Information Facility) is the Taiwan portal of GBIF. Although Taiwan’s land is not spacious, it possesses extraordinarily abundant biodiversity resources and many endemic species. TaiBIF is in charge of integrating Taiwan's biodiversity information, including lists of species and local experts, illustrations of species, introduction of endemic species and invasive species, Taiwan's terrestrial and marine organisms, biodiversity literature, geographical and environmental information, information about relevant institutions, organizations, projects, and observation spots, the Catalog of Life (a list of Taiwanese endemic species), and publications.
FAIRsharing.y2yct1	Allele frequency resource for research and teaching	ALFRED	ALFRED is designed to make allele frequency data on human population samples readily available for use by the scientific and educational communities.
FAIRsharing.y3mwym	Numerical Markup Language	NuML	The Numerical Markup Language (NuML) (pronounce "neumeul" and not "new em el", that sounds like NewML) is a simple XML format to exchange multidimensional arrays of numbers to be used with model and simulation descriptions. NuML was initially developed as part of the Systems Biology Results Markup Language (SBRML).
FAIRsharing.y3vp4j	Ontology of Language Disorder in Autism	LDA	Language terms used in the domain of autism. The language terms were obtained via text mining and automatic retrieval of terms from the corpus of PubMed abstracts.
FAIRsharing.y47s7f	International Classification for Nursing Practice	ICNP	The International Classification for Nursing Practice (INCP) was accepted by WHO within the WHO Family of International Classifications (FIC) to extend the coverage of the domain of nursing practice as an essential and complementary part of professional health services. ICNP classifies patient data and clinical activity in the domain of nursing and can be used for decision-making and policy development aimed at improving health status and health care delivery. ICNP can represent diagnoses, interventions, and outcomes. A number of subsets are available to provide precoordinated concepts for select health priorities, including nursing outcome indicators, paediatric pain management, palliative care, and partnering with patients and families to promote adherence to treatment.
FAIRsharing.y49yj6	Herbarium information standards and protocols for interchange of data	HISPID3	The 'Herbarium Information Standards and Protocols for Interchange of Data' (HISPID) is a standard format for the interchange of electronic herbarium specimen information. HISPID has been developed by a committee of representatives from all major Australian herbaria. This interchange standard was first published in 1989, with a revised version published in 1993./nHISPID3 (version 3) is an accession-based interchange standard. Although many fields refer to attributes of the taxon they should be construed as applying to the specimen represented by the record, not to the taxon per se. The interchange of taxonomic, nomenclatural, bibliographic, typification, rare and endangered plant conservation, and other related information is not dealt with in this standard, unless it specifically refers to a particular accession (record). While this standard is still in use, it is no longer actively maintained (labelled as prior on the TDWG website).
FAIRsharing.y4RpVy	Data Documentation Initiative Controlled Vocabularies	DDI CVs	The Data Documentation Initiative (DDI) Controlled Vocabularies Group (CVG) has created a set of controlled vocabularies (CVs) that can be used with DDI as well as for other purposes and applications. The DDI CVs are used to aid in the description and documentation of data in the social science research community. The published DDI-CVs work with both versions of the DDI specification (DDI-L and DDI-C).
FAIRsharing.y4z3tx	Clinical Study Ontology	CSO	Ontology to describe general clinical studies.
FAIRsharing.y6w78m	Coherent X-ray Imaging Data Bank	CXIDB	The Coherent X-ray Imaging Data Bank (CXIDB) offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. It arose from the need to share the terabytes of data generated from X-ray free-electron laser experiments although it caters to all light sources. Accessibility is crucial not only to make efficient use of experimental facilities, but also to improve the reproducibility of results and enable new research based on previous experiments.
FAIRsharing.y74cjw	Cell Press - Neuron - Information for Authors	None	Neuron is part of the Cell Press family of journals, and shares much of its guidelines with them. The Information for Authors page contains a broad range of guidelines for publishing in Neuron. With regards to data deposition, data sets must be made freely available to readers from the date of publication and must be provided to editors and peer reviewers at submission for the purposes of evaluating the manuscript. For many data types, submission of the full data set to a community-endorsed, public repository is mandatory. In such cases, accession numbers must be provided in the paper.
FAIRsharing.y9d8rt	Proteomics Pipeline Infrastructure for CPTAC	CPTAC	A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project
FAIRsharing.ya2wjp	Interaction Ontology	IxnO	The Interaction ontology (IxnO) was developed to enable curation of chemical-gene and chemical-protein interactions for the Comparative Toxicogenomics Database (CTD). CTD is a freely available resource that aims to promote understanding and novel hypothesis development about the effects of the environment on human health.
FAIRsharing.YAdSwh	FAIR Maturity Indicator Gen2-MI-R1.1	None	The FAIR Maturity Indicator Gen2-MI-R1.1 Maturity Indicator measures the presence of a pointer in the metadata to the data license. Data that does not have a license cannot (legitimately) be reused, since the conditions of that reuse are not known.
FAIRsharing.yc237s	Multi-Scale Multi-Step Ontology	MS2O	The Multi-scale Multi-step ontology (MS2O) is an ontology to describe transformation processes. MS2O was created for an interdisciplinary project concerning transformation processes in food science. The use case concerns the production of stabilized micro-organisms performed at INRA (French National Institute for Agricultural Research). Experimental observations are available for some inputs of the production processes, at different steps and at a certain scale.
FAIRsharing.yd76dk	Major Intrinsic Proteins Modification Database	MIPModDB	This is a database of comparative protein structure models of the MIP (Major Intrinsic Protein) family of proteins. The MIPs have been identified from the completed genome sequence of organisms available at NCBI.
FAIRsharing.yd91ak	Belgian BIF IPT - GBIF Belgium Repository	None	The Belgium Biodiversity Platform maintains this data repository in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). The Belgian Biodiversity Platform is a science-policy interface that offers a privileged access to primary biodiversity data and research information. The Platform encourages interdisciplinary cooperation among scientists and serves as an interface between researchers and science-policy organizations. It provides advice on the designation of biodiversity research priorities and promotes Belgian biodiversity research in international fora.
FAIRsharing.yDJci5	FAIR Metrics - Access Protocol	FM-A1.1	FM-A1.1 provides a metric for the nature and use limitations of the access protocol. Access to a resource may be limited by the specified communication protocol. Protocols that are closed source or that have royalties associated with them could prevent users from being able to obtain the resource. To fulfil this metric, the following must be provided: i) A URL to the description of the protocol, ii) true/false as to whether the protocol is open source, iii) true/false as to whether the protocol is (royalty) free. This metric applies to part A1.1 of the FAIR Principles.
FAIRsharing.ydnwd9	Ontology of General Purpose Datatypes	OntoDT	This ontology contains entities such as: datatype, datatype generator, datatype quality and others giving the possibility to represent arbitrary complex datatypes. This is an important fact for a general data mining ontology that wants to represent and query over modeling algorithms for mining structured data. The ontology was first developed under the OntoDM (Ontology of Data Mining is available at http://kt.ijs.si/panovp/OntoDM) ontology, but for generality and reuse purpose it was decided to export it as a separate ontology. Additionally, the OntoDT ontology is based on and ISO/IEC 11404 (http://www.iso.org/iso/catalogue_detail.htm?csnumber=39479) standard and can be reused used independently by any domain ontology that requires representation and reasoning about general purpose datatypes.
FAIRsharing.Yedluf	Clinical Interpretation of Variants in Cancer	CIViC	CIViC is an expert-crowdsourced knowledgebase for Clinical Interpretation of Variants in Cancer describing the therapeutic, prognostic, diagnostic and predisposing relevance of inherited and somatic variants of all types. Realizing precision medicine will require information to be centralized, debated and interpreted for application in the clinic. CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer. Our goal is to enable precision medicine by providing an educational forum for dissemination of knowledge and active discussion of the clinical significance of cancer genome alterations.
FAIRsharing.yedsf5	FAANG metadata sample specification standard	None	The FAANG metadata sample specification document describes the principles and structure for the FAANG metadata guidance. The main goal of the FAANG standards is to ensure all FAANG samples are well described and that the description is well structured. In the sample context, we consider donor animals, tissue samples, primary cells or any other biological material to be samples. The FAANG project will establish an infrastructure capable of efficiently analyzing genome-wide functional data for animal species.
FAIRsharing.YEsQFH	International Virtual Observatory Alliance Document Standards Policy	IVOA Doc Std Policy	This document describes the types of official IVOA documents and the process by which documents are advanced from Working Drafts to formal Recommendations and from Notes to Endorsed Notes.
FAIRsharing.yfc7pa	mzData	mzData	mzData is an XML format for representing mass spectrometry data in such a way as to completely describe the instrumental aspects of the experiment.
FAIRsharing.yfk4w2	Genomics England | PanelApp	PanelApp	Genomics England PanelApp is a publically-available knowledgebase that allows virtual gene panels related to human disorders to be created, stored and queried. It includes a crowdsourcing tool that allows genes to be added or reviewed by experts throughout the worldwide scientific community, providing an opportunity for the standardisation of gene panels, and a consensus on which genes have sufficient evidence for disease association. The diagnostic grade ‘Green’ genes and their modes of inheritance in the Version 1+ PanelApp virtual gene panels are used to direct the variant tiering process for the interpretation of genomes in the 100,000 Genomes Project and for the National Health Service England Genomic Medicine Service. As panels in PanelApp are publically available, they can also be utilised by others. Experts are asked to register (https://panelapp.genomicsengland.co.uk/accounts/registration/) in order to review and rate the genes on the panel to indicate whether there is a diagnostic-grade level of evidence for the gene to be implicated in a given disease. Bioinformaticians can access the data via the PanelApp API (https://panelapp.genomicsengland.co.uk/#!API). More detailed background information, instructions and updates can be found on the PanelApp homepage tabs.
FAIRsharing.yfk79s	Fluxdata	Fluxdata	A data portal for the Fluxnet community across the globe which supports the access to and sharing of data on the eddy covariance flux measurements of carbon, water vapor and energy exchange.
FAIRsharing.yg0zpm	Computer-based Patient Record Ontology	CPR	A uniform core set of data elements (whose formal semantics are captured in OWL) for use in a Computer-Based Patient Record (CPR).
FAIRsharing.YGPmfW	Minimum Information Required for A Glycomics Experiment - Guidelines for Reporting NMR Data on Binding of Glycans to Receptors	MIRAGE NMR Guidelines - Glycan Recognition	These guidelines are proposed to comprehensively describe the NMR experiments and data obtained to characterize glycan recognition by various receptors. The receptor can be a glycan binding protein (such as lectins and antibodies), a glycan binding organism (such as cells) or can have a different nature including synthetic glycan binding molecules.
FAIRsharing.yhLgTV	Investigation Study Assay JSON	ISA-JSON	Investigation Study Assay JSON (ISA-JSON) describes the ISA Abstract Model reference implementation specified using the JavaScript Object Notation (JSON) format, a text format for serializing structured data. The ISA model consists of three core entities to capture experimental metadata: investigation, study and assay. The extensible, hierarchical structure of this model enables the representation of studies employing one or a combination of technologies, focusing on the description of its experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships).
FAIRsharing.yhxj0x	APA Tests and Testing cluster	APATANDT	APA Tests and Testing Cluster
FAIRsharing.yIYItV	Transcription Factor Class Schema	TFClass Schema	The TFClass Schema is an identifier schema for classifying transcription factors according to a six-level schema, four of which are abstractions according to different criteria, while the fifth level represents TF genes and the sixth individual gene products. The first four levels of the TFClass schema are Superclass, Class, Family and Subfamily, with Subfamily an optional category. Two lower levels represent physical entities (i.e. genes and gene products) and have been termed Genera and Species (or "molecular species", to avoid confusion with biological species).
FAIRsharing.yjr7et	Autism Spectrum Disorder Phenotype Ontology	ASDPTO	Autism Spectrum Disorder Phenotype Ontology encapsulates the Autism Spectrum Disorder behavioral phenotype, informed by the standard ASD assessment instruments and the currently known characteristics of this disorder. http://www.ncbi.nlm.nih.gov/pubmed/24163114
FAIRsharing.YKGuWm	Covid-19 Thesaurus	None	This bilingual thesaurus (French-English), developed at Inist-CNRS, covers the concepts from the emerging COVID-19 outbreak which reminds the past SARS coronavirus outbreak and Middle East coronavirus outbreak. This thesaurus is based on the vocabulary used in scientific publications for SARS-CoV-2 and other coronaviruses, like SARS-CoV and MERS-CoV. It provides a support to explore the coronavirus infectious diseases.
FAIRsharing.yknezb	DataCite Repository	DataCite	DataCite is a leading global non-profit organisation that provides persistent identifiers (DOIs) for research data. Their goal is to help the research community locate, identify, and cite research data with confidence. They support the creation and allocation of DOIs and accompanying metadata. They provide services that support the enhanced search and discovery of research content. They also promote data citation and advocacy through community-building efforts and responsive communication and outreach materials. DataCite gathers metadata for each DOI assigned to an object. The metadata is used for a large index of research data that can be queried directly to find data, obtain stats and explore connections. All the metadata is free to access and review. To showcase and expose the metadata gathered, DataCite provides an integrated search interface, where it is possible to search, filter and extract all the details from a collection of millions of records.
FAIRsharing.YlASKr	SECURE-Cirrhosis Registry	None	SECURE-Cirrhosis Registry is a secure, online, de-identified Personal Health Identifier (PHI)-free reporting registry for patients with chronic liver disease and post-liver transplantation
FAIRsharing.ym3jjm	GWIPS-viz	GWIPS-viz	GWIPS-viz is a freely available on-line genome browser which provides pre-populated ribosome profiling (Ribo-seq) and mRNA-seq tracks from published studies.
FAIRsharing.YmkBZX	Pathogen-Host Interaction Data integration and Analysis System	PHIDIAS	PHIDIAS is a web-based database and analysis system that aims to manually curate, computationally analyze, and address different scientific issues in the areas of pathogen-host interactions (PHI, or called host-pathogen interactions or HPI). PHIDIAS has emphasized the study of those pathogens that cause various infectious diseases in humans and animals. The recently published Victors analysis program is a relatively independent system within the PHIDIAS database and analysis resource.
FAIRsharing.yNNTvk	Biodiversity Heritage Library	BHL	The Biodiversity Heritage Library (BHL) is the world’s largest open access digital library for biodiversity literature and archives. Operating as an international library consortium, BHL provides free access to millions of pages, representing over 500 years of scientific research, alongside services like data exports, APIs, and taxonomic intelligence tools to facilitate discovery and reuse of data and collections.
FAIRsharing.ynxB7A	Algorithm Selection Library	ASlib	A benchmark library for algorithm selection problems in AI, with a standard data format and tools to work with the format. This record describes the project repository, which contains data sets retrieved from literature. However, new algorithm selection scenarios can be submitted by opening a pull request in the repository. A very simple starter script is also provided to generate a ASlib scenarios from two csv files with runtime data and instance features.
FAIRsharing.yOKiQs	Iowa State University's DataShare	ISU DataShare	Iowa State University’s DataShare is an open access repository for sharing, publishing, and archiving research data created by Iowa State University scholars and researchers.
FAIRsharing.YovxU6	Vocabulary of Philosophy	None	Controlled vocabulary used for indexing bibliographical records for the "Philosophy" FRANCIS database (1972-2015). It consists of 4435 entries in mainly 2 languages (English and French) grouped into 102 collections.
FAIRsharing.yp3rcg	Eukaryotic Paralog Group Database	EPGD	The database is gene-centered and organized by paralog family. It focused on the paralogs and the duplication events in the evolution. The paralog families and paralogons can be searched by text or sequence, and are downloadable from the website in plain text files.
FAIRsharing.ypfgeq	Translational Medicine Ontology	TMO	This project focuses on the development of a high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research, hypothesis management, experimental studies, compounds, formulation, drug development, market size, competitive data, population data, etc. to be brought together. This would enable scientists to answer new questions, and to answer existing scientific questions more quickly. This will help pharmaceutical companies to model patient-centric information, which is essential for the tailoring of drugs, and for early detection of compounds that may have sub-optimal safety profiles. The ontology should link to existing publicly available domain ontologies.
FAIRsharing.ypkpgf	ISO-15926-2_2003_annotations	ISO-ANNOTATIONS	Oil and Gas Annotations
FAIRsharing.ypqwvr	Spinal Cord Injury Ontology	SCIO	representation of pre-clinical studies in the domain of spinal cord injury therapies
FAIRsharing.yr61md	CDISC Define eXtensible Markup Language	CDISC Define-XML	Define-XML transmits metadata that describes any tabular dataset structure. When used with the CDISC content standards, it provides the metadata for human and animal model datasets using the SDTM and/or SEND standards and analysis datasets using ADaM. Define-XML is required by the United States Food and Drug Administration (FDA) and the Japanese Pharmaceuticals and Medical Devices Agency (PMDA) for every study in each electronic submission to inform the regulators which datasets, variables, controlled terms, and other specified metadata were used.
FAIRsharing.yr6mb8	Pilot Ontology	POL	"Pilot Ontology" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1399. This text was generated automatically. If you work on the project responsible for "Pilot Ontology" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.yrkkbt	The Chemical Probes Portal	None	The Chemical Probes Portal is an online open access catalog of annotated small molecule inhibitors, agonists and other chemical tools for biological research and preclinical drug discovery. Annotations for are extensive and distinguish between activity in cells and model organisms. Probe records also include ratings and commentary from our Scientific Advisory Board, which consists of known experts in medicinal chemistry, chemical biology, pharmacology and related fields.
FAIRsharing.ys5ta3	System for Earth Sample Registration Catalog	SESAR Catalog	SESAR operates a registry that distributes the International Geo Sample Number IGSN. SESAR catalogs and preserves metadata profiles of physical samples, and provides access to the sample catalog via the Global Sample Search.
FAIRsharing.ysih8m	CityJSON - A JSON-based encoding for 3D city models	CityJSON	CityJSON is a JSON-based encoding for storing 3D city models, also called digital maquettes or digital twins. The aim of CityJSON is to offer a compact and developer-friendly format, so that files can be easily visualised, manipulated, and edited. It was designed with programmers in mind, so that tools and APIs supporting it can be quickly built, and several have been created already.
FAIRsharing.ysp7ke	Plant Resistance Gene Database	PRGdb	PRGdb is an open and daily updated space about plant resistance genes, in which all information about this family is stored, curated and discussed. This resource encourages research community curation of plant resistance genes.
FAIRsharing.ytfz9g	uni-ece	uni-ece	"uni-ece" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/3048. This text was generated automatically. If you work on the project responsible for "uni-ece" then please consider helping us by claiming this record and updating it appropriately.
FAIRsharing.YugnuL	Hyper Text Markup Language	HTML	Hyper Text Markup Language (HTML) is the World Wide Web’s core markup language. It is used to create and design web pages and other information which can be displayed in a web browser. This specification defines an abstract language for describing documents and applications, and some APIs for interacting with in-memory representations of resources that use this language.
FAIRsharing.yuJ8gl	Global Information System of the International Treaty on Plant Genetic Resources for Food and Agriculture	GLIS of the ITPGRFA	GLIS is made available according to Art. 17 of the International Treaty to facilitate access and exchange, based on existing information systems, on scientific, technical and environmental matters related to plant genetic resources for food and agriculture. This service assigns Digital Object Identifiers (DOIs) to Plant Genetic Resources for Food and Agriculture (PGRFA) for reference in third party systems and scientific literature. Access to the system is free and open to anyone.
FAIRsharing.yvhq61	Educational and Research Picture Archiving and Communication System	None	The core of the system is tailored PACS (Picture Archiving and Communication System). It forms the basis for educational and research applications such as the development of databases of case studies describing the treatment of real patients. Images appropriate for teaching or research purposes are made anonymous. This database is in Czech and has restricted access.
FAIRsharing.yvmb9y	Transparency and Openness Promotion Guidelines	TOP	Transparency, open sharing, and reproducibility are core values of science, but not always part of daily practice. Journals, funders, and scholarly societies can increase reproducibility of research by adopting the Transparency and Openness Promotion (TOP) Guidelines and helping them evolve to meet the needs of researchers and publishers while pursuing the most transparent practices. Published in 2015, the TOP guidelines include eight modular standards, each with three levels of increasing stringency. Journals and funders select which of the eight transparency standards they wish to adopt and select a level of implementation for each standard. These features provide flexibility for adoption depending on disciplinary variation, but simultaneously establish community standards.
FAIRsharing.yxkdpg	Proteome-pI : proteome isoelectric point database	Proteome-pI	Proteome-pI is an online database containing information about predicted isoelectric points for 5,029 proteomes (21 million of sequences) calculated using 18 methods. The isoelectric point, the pH at which a particular molecule carries no net electrical charge, is an important parameter for many analytical biochemistry and proteomics techniques, especially for 2D gel electrophoresis (2D-PAGE), capillary isoelectric focusing, liquid chromatography–mass spectrometry and X-ray protein crystallography. The database allows the retrieval of virtual 2D-PAGE plots and the development of customized fractions of proteome based on isoelectric point and molecular weight. Moreover, Proteome-pI facilitates statistical comparisons of the various prediction methods as well as biological investigation of protein isoelectric point space in all kingdoms of life (http://isoelectricpointdb.org/statistics.html). The database includes various statistics and tools for interactive browsing, searching and sorting. It can be searched and browsed by organism name, average isoelectric point, molecular weight or amino acid frequencies. Proteins with extreme pI values are also available. For individual proteomes, users can retrieve proteins of interest given the method, isoelectric point and molecular weight ranges (this particular feature can be highly useful to limit potential targets in analysis of 2DPAGE gels or before conducting mass spectrometry). Finally, some general statistics (total number of proteins, amino acids, average sequence length, amino acid and di-amino acid frequencies) and datasets corresponding to major protein databases such as UniProtKB/TrEMBL and the NCBI non-redundant (nr) database have also been precalculated.
FAIRsharing.yXNjR7	The American Society for Hematology Research Collaborative COVID-19 Registry for Hematologic Malignancy	ASH RC COVID-19 Registry for Hematology	The ASH Research Collaborative (ASH RC) COVID-19 Registry for Hematology, a global public reference tool that is part of the ASH RC Data Hub platform, captures data on individuals who test positive for COVID-19, have a hematologic condition (past or present) and/or have experienced a post-COVID-19 hematologic complication. As data are analyzed, real-time observational summaries are available via a dashboard.
FAIRsharing.yXPvpU	TISSUES	TISSUES	TISSUES is a weekly updated web resource that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. All evidence to common protein identifiers and Brenda Tissue Ontology terms is mapped, and confidence scores that facilitate comparison of the different types and sources of evidence are assigned. These scores are visualized on a schematic human body to provide a convenient overview.
FAIRsharing.yxrs8t	MethylomeDB	MethylomeDB	This resource details DNA methylation profiles in human and mouse brain. This database includes genome-wide DNA methylation profiles for human and mouse brains. The DNA methylation profiles were generated by Methylation Mapping Analysis by Paired-end Sequencing (Methyl-MAPS) method and analyzed by Methyl-Analyzer software package. The methylation profiles cover over 80% CpG dinucleotides in human and mouse brains in single-CpG resolution. The integrated genome browser (modified from UCSC Genome Browser allows users to browse DNA methylation profiles in specific genomic loci, to search specific methylation patterns, and to compare methylation patterns between individual samples.
FAIRsharing.yxs0d0	BCCM/DCG Diatoms Collection	BCCM/DCG	The BCCM/DCG public collection is the only culture collection worldwide specialized in diatoms, the most species-rich and ecologically important algal group. Other microalgae interesting from an applied perspective are included in the collection as well. Strains are kept as safe deposits or are publicly available for the scientific community. These are distributed worldwide as research or reference material to scientific institutions and companies.
FAIRsharing.yy18av	Minimum Information About a Cellular Assay for Regenerative Medicine	MIACARM	Currently, there are more than 20 human cell information storage sites around the world. However, reproducibility and data exchange among different laboratories or cell information providers are usually inadequate or nonexistent because of the lack of a standardized format for experiments. This study, which is the fruit of collaborative work by scientists at stem cell banks and cellular information registries worldwide, including those in the U.S., the U.K., Europe, and Japan, proposes new minimum information guidelines, Minimum Information About a Cellular Assay for Regenerative Medicine (MIACARM), for cellular assay data deposition. MIACARM was developed based on the existing guideline called MIACA. MIACARM is intended to promote data exchange and facilitation of practical regenerative medicine.
FAIRsharing.yyf78h	DataONE	DataONE	DataONE is a community driven project providing access to data across multiple member repositories, supporting enhanced search and discovery of Earth and environmental data.
FAIRsharing.yYjZWb	Data Model for Astronomical DataSet Characterisation	CharDM	The Data Model for Astronomical DataSet Characterisation defines the high level metadata necessary to describe the physical parameter space of observed or simulated astronomical data sets, such as 2D-images, data cubes, X-ray event lists, IFU data, etc.. The Characterisation data model is an abstraction which can be used to derive a structured description of any relevant data and thus to facilitate its discovery and scientific interpretation. The model aims at facilitating the manipulation of heterogeneous data in any VO framework or portal. A VO Characterisation instance can include descriptions of the data axes, the range of coordinates covered by the data, and details of the data sampling and resolution on each axis. These descriptions should be in terms of physical variables, independent of instrumental signatures as far as possible.
FAIRsharing.yzagph	Common Data Index	CDI	The Common Data Index (CDI) service gives users a highly detailed insight in the availability and geographical spreading of marine data sets that are managed by the SeaDataNet data centres. Moreover it provides a unique interface for requesting access, and if granted, for downloading data sets from the distributed data centres across Europe.
FAIRsharing.YzTIE8	National Tibetan Plateau/Third Pole Environment Data Center	TPDC	The National Tibetan Plateau/Third Pole Environment Data Center (TPDC) stores research data concerning the Tibetan Plateau and surrounding regions. TPDC provides online and offline sharing protocols for data users with bilingual data sharing in Chinese and English. There are more than 2400 datasets shared by TPDC, covering geography, atmospheric science, cryospheric science, hydrology, ecology, geology, geophysics, natural resource science, social economy, and other fields. TPDC aims to provide data according to the FAIR ( findable, accessible, interoperable, and reusable) data sharing principles. Digital Object Identifiers (DOI) are used for scientific data access, tracking, and citation.
FAIRsharing.z057ar	GenePattern GeneSet Table Format	None	GenePattern GeneSet Table Format is an analytical tool and file format for the analysis of gene expression and network analysis provided by GenePattern.
FAIRsharing.z09fg9	Policy for use and oversight of samples and data arising from the Biomedical Resource of the 1958 Birth Cohort (National Child Development Study)	None	The 1958 birth cohort (1958BC) or National Child Development Study (NCDS) started out as a study of Perinatal Mortality that recruited just over 17,000 births in a single week (3rd- 9th March) in 1958. It aimed to identify social and obstetric factors linked to stillbirth and neonatal death and its findings contributed to the improvement of maternity services in Britain and to a subsequent reduction in perinatal mortality. Although the original survey was not planned as a longitudinal study, the participants have been followed ever since, and in 2002-2003, a Biomedical Survey of the cohort (aged 44–45 yr) was conducted, with several collaborating partners, under the Medical Research Council’s (MRC) ‘Health of the Public’ initiative. This has led to new governance requirements, described in this policy.
FAIRsharing.z0ea6a	doRiNA	doRiNA	Database of RNA interactions in post-transcriptional regulation.
FAIRsharing.z0rqUk	Food and Agriculture Organization Corporate Statistical Database	FAOSTAT	Food and Agriculture Organization Corporate Statistical Database (FAOSTAT) provides free access to food and agriculture data for over 245 countries and territories and covers all FAO regional groupings from 1961 to the most recent year available.
FAIRsharing.z1ars2	Database of Bacterial Exotoxins for Human	DBETH	DBETH is the Database of Bacterial Exotoxins for Human. The aim of this database is to assemble information on the toxins responsible for causing bacterial pathogenesis in humans.
FAIRsharing.Z1Y4J2	ZBW Journal Data Archive	JDA	The ZBW Journal Data Archive is a service for editors of journals in economics and management. The aim of this newly established web service is to offer scholarly journals an easy to handle infrastructure for managing and storing data sets of published articles and to link the data sets to their corresponding publication. The service is free of charge for academic journals.
FAIRsharing.z2cz7s	Molgula oculata Anatomy and Development Ontology	MOOCULADO	The first ontology describing the anatomy and the development of Molgula oculata.
FAIRsharing.z4xpxx	AgroPortal	AgroPortal	AgroPortal is an ontology repository for agronomy as well as food, plant, agriculture and biodiversity sciences. It provides ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. To align with the needs of the agronomy community, AgroPortal uses SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities).
FAIRsharing.z67ht2	Joint Data Archiving Policy	JDAP	The Joint Data Archiving Policy (JDAP) describes a requirement that data supporting publications be publicly available. This policy was adopted in a joint and coordinated fashion by many leading journals in the field of evolution in 2011, and JDAP has since been adopted by additional journals across various disciplines. Other journals are welcome to endorse and implement JDAP, or use it as a model. Journals that adopt JDAP often recommend Dryad as an appropriate data repository, however, the JDAP initiative is distinct from Dryad.
FAIRsharing.z6rbe3	BacMap	BacMap	BacMap is a picture atlas of annotated bacterial genomes. It is an interactive visual database containing hundreds of fully labeled, zoomable, and searchable maps of bacterial genomes.
FAIRsharing.z87h0e	Minimal Information for Studies of Extracellular Vesicles	MISEV	The MISEV2018 guidelines include tables and outlines of suggested protocols and steps to follow to document specific extracellular vesicle (EV)-associated functional activities, as well as a checklist that summarizes key points. The International Society for Extracellular Vesicles (ISEV) proposed Minimal Information for Studies of Extracellular Vesicles (“MISEV”) guidelines for the field in 2014, which have been updated again in 2018.
FAIRsharing.z8hGUU	TreeSnap	TreeSnap	Invasive diseases and pests threaten the health of America’s forests. Scientists are working to understand what allows some individual trees to survive, but they need to find healthy, resilient trees in the forest to study. That’s where concerned foresters, landowners, and citizens (you!) can help. Tag trees you find in your community, on your property, or out in the wild using TreeSnap! Scientists will use the data you collect to locate trees for research projects like studying the genetic diversity of tree species and building better tree breeding programs.
FAIRsharing.z8nb52	legalapa	LEGALAPA	this is a test with the legal cluster of apa ontology
FAIRsharing.z9kvry	Systems Biology Graphical Notation	SBGN	The Systems Biology Graphical Notation (SBGN) project is an effort to standardize the graphical notation used in maps of biological processes. The mission of SBGN project is to develop high quality, standard graphical languages for representing biological processes and interactions. Each SBGN language is based on the consensus of the broad international SBGN community of biologists, curators and software developers.
FAIRsharing.zaa7w	HumanCyc	HumanCyc	HumanCyc is a bioinformatics database that describes human metabolic pathways and the human genome. By presenting metabolic pathways as an organizing framework for the human genome, HumanCyc provides the user with an extended dimension for functional analysis of Homo sapiens at the genomic level.
FAIRsharing.zABkyi	heiDATA	heiDATA	heiDATA is Heidelberg University’s research data repository. It is managed by the Competence Centre for Research Data, a joint institution of the University Library and the Computing Centre. All researchers affiliated with Heidelberg University can use this service for archiving and publishing their data. heiDATA runs on software from the Dataverse Project.
FAIRsharing.zb33h5	TAIR annotation data Format	None	At TAIR, we display Gene Ontology and Plant Ontology annotations made by TAIR curators and those made by the community including individual researchers and contributors to the GO Consortium. The GO annotations in TAIR are made using a combination of manual and computational methods.
FAIRsharing.zbff4z	Gene Regulation Ontology	GRO	The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes.
FAIRsharing.zbmg97	Essential Study Quality Descriptors for Data from Nutritional Epidemiologic Research	None	Pooled analysis of secondary data increases the power of research and enables scientific discovery in nutritional epidemiology. Information on study characteristics that determine data quality is needed to enable correct reuse and interpretation of data. This study aims to define essential quality characteristics for data from observational studies in nutrition. To ensure interoperability of nutrition data systems, ENPADASI is developing an Ontology for Nutritional Studies (ONS). All descriptors of these study data characteristics will be made part of ONS and implemented as such in the research infrastructure. The descriptors for data quality will be mapped to existing or newly developed ontology terms. Integration of study quality characteristics with the ONS will enable the consideration of study quality during the querying of the nutrition research infrastructure and interoperability with other data systems.
FAIRsharing.zc2tfa	Fanconi Anemia Ontology	IFAR	An application ontology devoted to the standardized recording of data related to Fanconi Anemia (FA). This ontology was created using an OWL file provided by Dr. Ada Hamish (and Francois Schiettecatte) at the Centers for Mendelian Genetics, with their permission. Their original ontology can be found at: http://phenodb.net/help/features. Modifications were made using HPO, OMIM, NCI, and SNOMED. Novel classes pertaining to FA were added and defined as appropriate.
FAIRsharing.zcfp65	Biomedical Resource Ontology	BRO	Biomedical Resource Ontology (BRO) enables semantic annotation and discovery of biomedical resources. The biomedical research community relies on a diverse set of resources, both within their own institutions and at other research centers. Without effective means to locate and query these resources, it is challenging, if not impossible, for investigators to be aware of the myriad resources available, or to effectively perform resource discovery when the need arises.
FAIRsharing.zcjkc7	Standard for Documentation of Astronomical Catalogues	SDAC	A set of conventions for archiving astronomical data. As well as path, filename and data format conventions, the key file is a plain text description file, including all the necessary metadata information related to the catalogue: author(s), reference(s) of the related published papers, brief summary, scientific keys, caption and accurate description of each table of the catalogue.
FAIRsharing.zcveaz	4TU.ResearchData	4TU.ResearchData	4TU.ResearchData is an international data repository for science, engineering and design, open to anyone in the world to upload and download data. Its services include curation, sharing, long-term access and preservation of research datasets. These services are available to anyone around the world. In addition, 4TU.ResearchData also offers training and resources to researchers to support them in making research data findable, accessible, interoperable and reproducible (FAIR).
FAIRsharing.ZEbjok	Rolling Deck to Repository	R2R	Rolling Deck to Repository (R2R) catalogs and submits the underway environmental sensor data routinely acquired on research expeditions to long-term public archives. Data from each cruise are submitted directly to R2R by the vessel operator, rather than by the science party. Individual data sets are broken out according to instrument system and disseminated via the appropriate National Data Center after any proprietary holds (as permitted by the funding agency) are cleared. R2R provides remote download links as part of the Catalog. R2R provides essential documentation and standard products for each expedition, as well as tools to document shipboard data acquisition activities while underway. Post-cruise quality assessment of selected underway data types is provided, designed to evaluate the completeness of data and data documentation and to provide measures of instrument operation. Assessment of underway meteorological data is implemented in near-real-time in partnership with the SAMOS program at FSU.
FAIRsharing.zevp0z	Systems Biology Results Markup Language	SBRML	Systems Biology Results markup language (SBRML) specifies models composed of molecular species, and their interactions (including reactions). The markup language is intended to specify results from operations carried out on models Ñ SBRML. This resource can be used to communicate experimental data as long as it is possible to express the data in terms of a reference SBML model. SBRML is a means of specifying quantitative results in the context of a systems biology model.
FAIRsharing.zf8s5t	The Signaling Gateway	None	The UCSD Signaling Gateway Molecule Pages provides information on the proteins involved in cell signaling. This database combines expert authored reviews with curated, highly-structured data (e.g. protein interactions) and automatic annotation from publicly available data sources (e.g. UniProt and Genbank). 
FAIRsharing.zfdxet	BCCM/LMG Bacteria Collection	BCCM/LMG	BCCM/LMG is a bacterial culture collection currently comprising over 25.000 well-characterized strains. The biological origin of our collection is very broad, including bacterial isolates from food, clinical, veterinary, agricultural, aquatic and other environmental sources. This way, the biological resources of BCCM/LMG may serve the needs of various R&D sectors, including green, red, blue and white biotechnology.
FAIRsharing.ZFdYEf	biotracks	biotracks	Biotracks provides a standard format for cell migration tracking files and a series of converters from popular tracking sofware packages to the biotracks format, which is a specialization of the Frictionless Tabular Data Package .
FAIRsharing.zgqy0v	Case Reports	CARE	The CARE guidelines provide a framework that supports transparency and accuracy in the publication of case reports and the reporting of information from patient encounters. The publication of case reports following the CARE guidelines will provide practice-based data on interventions and outcomes that can be compared across therapeutic interventions and inform clinical practice guidelines.
FAIRsharing.zgwrmg	Minimum Information Model for tolAPC	MITAP	The minimum information model for tolAPC (MITAP) guideline is an initiative of members of the tolAPC field to provide a reporting framework that will make differences and similarities between tolAPC products transparent. Cellular therapies with tolerogenic antigen-presenting cells (tolAPC) show great promise for the treatment of autoimmune diseases and for the prevention of destructive immune responses after transplantation. The methodologies for generating tolAPC vary greatly between different laboratories, making it difficult to compare data from different studies; thus constituting a major hurdle for the development of standardised tolAPC therapeutic products. MITAP constitutes a first but important step towards the production of standardised and reproducible tolAPC for clinical application.
FAIRsharing.zI0vGD	ISO 28500:2017 Information and documentation — Web ARChive file format	WARC	The WARC (Web ARChive) file format offers a convention for concatenating multiple resource records (data objects), each consisting of a set of simple text headers and an arbitrary data block into one long file. The WARC format is an extension of the ARC file format (ARC) that has traditionally been used to store “web crawls” as sequences of content blocks harvested from the World Wide Web. Besides the primary content recorded in ARCs, the extended WARC format accommodates related secondary content, such as assigned metadata, abbreviated duplicate detection events, later-date transformations, and segmentation of large resources. The extension may also be useful for more general applications than web archiving. To aid the development of tools that are backwards compatible, WARC content is clearly distinguishable from pre-revision ARC content.
FAIRsharing.zj6y9h	Minimum Information About a Simulation Experiment	MIASE	The MIASE Guidelines, initiated by the BioModels.net effort, are a community effort to identify the Minimal Information About a Simulation Experiment, necessary to enable the reproducible simulation experiments. Consequently, the MIASE Guidelines list the information that a modeller needs to provide to enable the execution and reproduction of a numerical simulation experiment, derived from a given set of quantitative models. MIASE is a set of guidelines suitable for use with any structured format for simulation experiments. As such, MIASE is designed to help modelers and software tools to exchange their simulation settings and to foster collaboration.
FAIRsharing.zj850n	UniProtKB XML Format	None	XML Schema definition for the UniProtKB XML format.
FAIRsharing.zjcys8	Structure, Interfaces and Alignments for Protein-Protein Interactions Database	SNAPPI-DB	SNAPPI-DB is an object-oriented database of domain-domain interactions observed in structural data. The structural data is obtained from the MSD data warehouse as the MSD provides consistent data with links to many types of data about proteins and nucleic acids.
FAIRsharing.zjdfxz	Gramene: A curated, open-source, integrated data resource for comparative functional genomics in plants	Gramene	Gramene's purpose is to provide added value to plant genomics data sets available within the public sector, which will facilitate researchers' ability to understand the plant genomes and take advantage of genomic sequence known in one species for identifying and understanding corresponding genes, pathways and phenotypes in other plant species. It represents a broad spectrum of species ranging from unicellular photo-autotrophs, algae, monocots, dicots and other important taxonomic clades. Within Plant Reactome, a database portal of Gramene, there are over 60 plant genomes as well as pathways for more than 80 species.
FAIRsharing.zk8p4g	Open Microscopy Environment eXtensible Markup Language	OME-XML	OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data. It is a joint project between universities, research establishments, industry and the software development community. The purpose of OME-XML is to provide a rich, extensible way to save information concerning microscopy experiments and the images acquired therein.  OME-XML as a file format is superseded by OME-TIFF, which is the preferred container format for image data making use of the OME Data Model.
FAIRsharing.ZKahvn	DNA Methylation Interactive Visualization Database	DNMIVD	DNMIVD is a comprehensive annotation and interactive visualization database for DNA methylation profile of diverse human cancer constructed with high throughput microarray data from TCGA and GEO databases, and it also integrates some data from Pancan-meQTL and HACER databases.
FAIRsharing.zkdn1d	Food and Agriculture Organization (FAO)-IPGRI-Bioversity Multi-Crop Passport Descriptor	CO_020	The FAO/IPGRI Multi-Crop Passport Descriptor is part of the Crop Ontology (CO) project. The ontology has been adapted from the December 2015 version of the FAO/Bioversity Multi-Crop Passport Descriptors. Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. This ontology is one of these reference plant ontologies integrated within the Crop Ontology.
FAIRsharing.ZkwSlo	Animal Health Ontology for Livestock	AHOL	The AHOL ontology (Animal Health Ontology for Livestock) was built collaboratively within a network of experts in the livestock health field, in order to describe production diseases. Its structure is based on the type of disease: communicable, non communicable, genetic, metabolic, physical or psychological. The properties of each disease are related to associated symptoms (the expression of a phenotypical character), the affected organism (livestock, poultry, mammals, fishes) or the one causing the disease (virus, bacteria, fungus, parasite).
FAIRsharing.zmhqcq	European Mouse Mutant Cell Repository	EuMMCR	The EuMMCR (European Mouse Mutant cell Repository) is the mouse ES cell distribution unit in Europe. The EuMMCR has been founded as distribution unit of EUCOMM (European Mouse Mutagenesis Program). The EuMMCR provides an online database to help users discover and choose targeting vectors and mutant ES cell lines produced in the EUCOMM and EUCOMMTOOLS consortia.
FAIRsharing.zn05ta	Parkinson's Disease Ontology	PDON	The Parkinson's Disease Ontology (PDO) was created to represent and model the Parkinson's Disease knowledge domain. This ontology with a covers major biomedical concepts from molecular to clinical features of the disease as well as the different views on disease features held by molecular biologists, clinicians and drug developers. This resource has been created for use in the IMI-funded AETIONOMY project (www.aetionomy.org).
FAIRsharing.znjr4p	Tumor Associated Gene database	TAG	The tumor-associated gene (TAG) database was designed to utilize information from well-characterized oncogenes and tumor suppressor genes to facilitate cancer research. All target genes were identified through text-mining approach from the PubMed database.
FAIRsharing.znmpch	Data format for Project Tycho 2.0 pre-compiled dataset CSV files	Project Tycho Pre-compiled Data Format	Project Tycho Pre-compiled Data Format specifies the variables used and file format of pre-compiled datasets released by Project Tycho version 2.0.
FAIRsharing.ZNOAf5	Beilstein Journal of Nanotechnology	BJNano	The Beilstein Journal of Nanotechnology is an international, peer-reviewed, Open Access journal. It provides a unique platform for rapid publication without any charges (free for author and reader) – Platinum Open Access. In addition, authors retain copyright with a CC-BY 4.0 license.
FAIRsharing.znrhmd	Heart Failure Ontology	HFO	Heart failure ontology is an attempt to define heart-failure-relevant information including the causes and risk factors, signs and symptoms, diagnostic tests and results, and treatment.
FAIRsharing.znvzhj	Predictive Networks	None	Integration, navigation, visualization, and analysis of gene interaction networks. This record has been marked as "Uncertain" because its homepage no longer exists. If you have any information on the current status of this resource, please contact us via the "Ask Question" button at the top of this page, or contact us through any of the methods described in the footer.
FAIRsharing.zp55mz	Springer Nature Research Data Policy Type 4	None	The Springer Nature Research Data Policy Type 4 requires data sharing, evidence of data sharing and peer review of data. The policy text includes information on the Springer Nature list of recommended repositories; guidance on data citation; information on writing a data availability statement; and a link to the Springer Nature Research Data Helpdesk. Peer reviewers are encouraged to check the data availability statement for compliance with the policy, and are entitled to request access to the data (and code). The policy text also includes a list of considerations for peer reviewers when reviewing both the data availability statement and the dataset itself. Journals adhering to this policy recommend 1) the resources listed directly within this record, and 2) all resources listed in this record's parent policies (see the "extends" relationship). 
FAIRsharing.zpCPN7	Minimum Information about a Molecular Interaction Causal Statement	MI2CAST	The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST) guidelines describe the minimum and necessary information to depict causal interactions in molecular biology, as well as contextual details. The aim is to homogenize their representation for better usability and understanding, by making the data “FAIR” (Findable, Accessible, Interoperable and Reproducible). This checklist considers terms used in different formats (e.g., PSI-MITAB2.8, BEL, GO-CAM) and covers the full range of metadata that should ideally be annotated during the curation process to enrich the description of a molecular causal interaction. Complying with these guidelines should be considered as good practice for the annotation of causal statements to generate high quality statements.
FAIRsharing.ZPRtfG	Agronomic Linked Data	AgroLD	The Agronomic Linked Data (AgroLD) is a knowledge-based system relying on Semantic Web technologies and exploiting standard domain ontologies, which integrates data about plant species of high interest for the plant science community. AgroLD is an RDF knowledge base of 100M triples created by annotating and integrating more than 50 datasets from 10 data sources and linked using 10 ontologies.
FAIRsharing.zqzvyc	NCBI Structure		NCBI Structure, as part of the Entrez system, facilitates access to structure data by connecting them with associated literature, protein and nucleic acid sequences, chemicals, biomolecular interactions, and more.
Note that this resource was also known as Molecular Modeling Database (MMDB).
FAIRsharing.zr52g5	Crystallographic Information Framework	CIF	The acronym CIF is used both for the Crystallographic Information File, the data exchange standard file format of Hall, Allen & Brown (1991) (see Documentation), and for the Crystallographic Information Framework, a broader system of exchange protocols based on data dictionaries and relational rules expressible in different machine-readable manifestations, including, but not restricted to, Crystallographic Information File and XML.
FAIRsharing.zrmjr7	Minimum Information about an array-based toxicogenomics experiment	MIAME/Tox	MIAME/Tox was developed to extend MIAME for array-based toxicogenomics experiments.
FAIRsharing.ZS8uWa	MetaSRA	MetaSRA	MetaSRA is a database of normalized SRA human sample-specific metadata following a schema inspired by the metadata organization of the ENCODE project. This schema involves mapping samples to terms in biomedical ontologies, labeling each sample with a sample-type category, and extracting real-valued properties.
FAIRsharing.zsnv69	Multiple alignment	MAO	MAO is an ontology for multiple alignments of nucleic and protein sequences. MAO is designed to improve interoperation and data sharing between different alignment protocols for the construction of a high quality, reliable multiple alignment in order to facilitate knowledge extraction and the presentation of the most pertinent information to the biologist.
FAIRsharing.ztr3n9	FAIR Metrics - Machine-readability of metadata	FM-F2	FM-F2 measures the availability of machine-readable metadata that describes a digital resource. This metric does not attempt to measure (or even define) "Richness" - this will be defined in a future Metric. This metric is intended to test the format of the metadata - machine readability of metadata makes it possible to optimize discovery. For instance, Web search engines suggest the use of particular structured metadata elements to optimize search. Thus, the machine-readability aspect can help people and machines find a digital resource of interest. To conform to this metric, a URL to a document that contains machine-readable metadata for the digital resource must be provided. Furthermore, the file format must be specified. This metric applies to part F2 of the FAIR Principles.
FAIRsharing.ZTrlTh	National Institute of Polar Research Repository	NIPR Repository	This site provides access to the research output of the institution. The site interface is available in Japanese or English.
FAIRsharing.zve9cc	Proteasix Ontology	PxO	The Proteasix Ontology (PxO) is an ontology that supports the Proteasix tool; an open-source peptide-centric tool that can be used to predict automatically and in a large-scale fashion in silico the proteases involved in the generation of proteolytic cleavage fragments (peptides). PxO aims to describe the known proteases and their target cleavage sites, to enable the description of proteolytic cleavage fragments as the outputs of observed and predicted proteolysis, and to use knowledge about the function, species and cellular location of a protease and protein substrate to support the prioritisation of proteases in observed and predicted proteolysis. Although the Proteasix project website remains active, download / browse links to the ontology are no longer available and the owners of the resource have not confirmed its current status. Therefore we have marked this resource with an Uncertain status. Please get in touch if you can provide FAIRsharing with up-to-date information regarding this resource.
FAIRsharing.zvh04m	Alternative Poly(A) Sites database	APASdb	APASdb can visualize the precise map and usage quantification of different APA isoforms for all genes. The datasets are deeply profiled by the sequencing alternative polyadenylation sites (SAPAS) method capable of high-throughput sequencing 3'-ends of polyadenylated transcripts. Thus, APASdb details all the heterogeneous cleavage sites downstream of poly(A) signals, and maintains near complete coverage for APA sites. Furthermore, APASdb provides the quantification of a given APA variant among transcripts with different APA sites by computing their corresponding normalized-reads. In addition, APASdb supports URL-based retrieval, browsing and display of exon-intron structure, poly(A) signals, poly(A) sites location and usage reads, and 3'-untranslated regions (3'-UTRs). Currently, APASdb involves APA in various biological processes and diseases in human, mouse and zebrafish.
FAIRsharing.ZvHsiN	HydroShare	HydroShare	HydroShare is a system operated by The Consortium of Universities for the Advancement of Hydrologic Science Inc. (CUAHSI) that enables users to share and publish water-related data and models in a variety of flexible formats, and to make this information available in a citable, shareable and discoverable manner. HydroShare includes a repository for data and models, and tools (web apps) that can act on content in HydroShare providing users with a gateway to high performance computing and computing in the cloud. With HydroShare you can: share data and models with colleagues; manage access to shared content; share, access, visualize, and manipulate a broad set of hydrologic data types and models; publish data and models and obtain a citable digital object identifier (DOI); aggregate resources into collections; discover and access data and models published by others; use the web services application programming interface (API) to programmatically access resources; and use integrated web applications to visualize, analyze and run models with data in HydroShare.
FAIRsharing.zVIgGf	Crossref	Crossref	Crossref is a central reference linking service, providing cross-publisher citation links via an API and visualization tools. Links to funders and other related events and outputs are also available. There are additional services for members such as content registration and reference linking.
FAIRsharing.zvrep1	Minimum Information about a MARKer gene Sequence	MIxS - MIMARKS	MIMARKS is the metadata reporting standard of the Genomic Standards Consortium that covers marker gene sequences from environmental surveys or individual organisms
FAIRsharing.zvytda	International Classification of Primary Care Version 2 PLUS	ICPC-2 PLUS	The International Classification of Primary Care Version 2 PLUS (ICPC-2 PLUS, also known as the BEACH coding system) is a clinical terminology which extends the International Classification of Primary Care, Version 2 (ICPC-2). ICPC-2 PLUS can be used in age-sex disease registers, morbidity registers and full electronic health records in primary care. Primarily used in Australia, ICPC-2 PLUS is used within software packages and electronic health record (EHR) systems. It is also used in research projects, including the BEACH (Bettering the Evaluation And Care of Health) program, the national study of general practice activity. The terminology is therefore often referred to as the BEACH coding system.  ICPC-2 PLUS has been specifically designed by the FMRC for use in computerised clinical systems, recall systems, disease registers and secondary coding of clinical data. It is not part of the ICPC-2 standard. Charges apply for end users of ICPC-2 PLUS. All end users must sign an ICPC-2 PLUS end user contract before being given access to ICPC-2 PLUS. The World Organization of Family Doctors (WONCA) and the WONCA International Classification Committee (WICC) have no control over it although they do have control over the ICPC classification which the PLUS extension makes use of.
FAIRsharing.zwjNAh	Adaptive Immune Receptor Repertoire Rearrangement Schema	AIRR Rearrangement Schema	The Adaptive Immune Receptor Repertoire (AIRR) Rearrangement Schema, part of the AIRR Data Model, defines the annotations needed for rearrangements, which are sequences describing a rearranged adaptive immune receptor chain (e.g., antibody heavy chain or TCR beta chain). Data for Rearrangement objects are stored as rows in a tab-delimited file and should be compatible with any TSV reader. A dataset is defined in this context as: a TSV file, a TSV with a companion YAML file containing metadata, or a directory containing multiple TSV files and YAML files.
FAIRsharing.ZXDCn7	Policies for IP/ Licensing for Data and Resources Generated by IDG Members	None	It is imperative to avoid restrictive accessibility to the broad scientific community when establishing licenses and sharing practices, especially with consideration to the Resource Sharing Plan stated in the original IDG FOAs: “A primary goal of the IDG Program is to facilitate discoveries of the broad scientific community for the improvement of public health. Restrictive licensing and sharing practices for IDG-generated data, tools, and resources could substantially diminish their value and public benefit. Accordingly, awardees should manage data, resources, protocols, tools, and software in a way that achieves this goal. Sharing practices that would prevent or block access to or use of IDG Program data, tools, and resources for research purposes will be considered to be hindering the goals of the IDG Program.” IDG members remain committed to this goal of the IDG Program and it will be utilized as guidance for allowing access of resources.
FAIRsharing.Zz0lIi	Brainbase	Brainbase	Brainbase is a data management, collaboration and sharing platform for the human neuroscience community.  The platform provides private research collaboration workspaces, tools to flexibly organize and track subjects and sessions within studies, validation tools to check that metadata and datasets are complete and public sharing tools. Publicly shared data is searchable. FAIRsharing has marked this record as Uncertain because the homepage for Brainbase (https://brainbase.io) now sits behind a login screen, and therefore we cannot accurately assess the status of the resource. If you have any information on this resource, please get in touch.
FAIRsharing.zzaykv	Side Effect Resource	SIDER	SIDER contains information on marketed medicines and their recorded adverse drug reactions. The information is extracted from public documents and package inserts. The available information include side effect frequency, drug and side effect classifications as well as links to further information, for example drug_target relations.
FAIRsharing.zzgvrv	RNAJunction	RNAJunction	RNAJunction is a database of RNA junctions and kissing loop structures. It contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. It allows searching by PDB code, structural classification, sequence, keyword or inter-helix angles. RNAJunction is designed to aid analysis of RNA structures as well as design of novel RNA structures on a nanoscale. 
FAIRsharing.ZZZvAw	Units in the Virtual Observatory	VOUnits	VOUnits is a recommended syntax for writing the string representation of unit labels. In addition, it describes a set of recognised and deprecated units, which is as far as possible consistent with other relevant standards (BIPM, ISO/IEC and the IAU). The intention is that units written to conform to this specification will likely also be parsable by other well-known parsers. To this end, we include machine-readable grammars for other units syntaxes.
