{
  "metaregistry": [
    {
      "availability": {
        "alternate_providers": "irrelevant",
        "contact": "missing",
        "description": "required",
        "example": "irrelevant",
        "fair": true,
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "irrelevant",
        "search": true,
        "synonyms": "missing",
        "version": "present"
      },
      "contact": {
        "email": "ali.syed@kaust.edu.sa",
        "github": "aliraza995",
        "name": "Ali Syed",
        "orcid": "0000-0002-5103-9058"
      },
      "description": "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets.",
      "download": "http://aber-owl.net/api/ontology/?format=json",
      "example": "CHEBI",
      "homepage": "http://aber-owl.net",
      "name": "AberOWL",
      "prefix": "aberowl",
      "provider_uri_format": "http://aber-owl.net/ontology/$1",
      "resolver_type": "lookup",
      "resolver_uri_format": "http://aber-owl.net/ontology/$1/#/Browse/<http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2F$1_$2>"
    },
    {
      "availability": {
        "alternate_providers": "irrelevant",
        "contact": "present",
        "description": "required",
        "example": "irrelevant",
        "fair": false,
        "fair_note": "The API for AgroPortal requires authentication",
        "homepage": "required",
        "license": "present",
        "name": "required",
        "pattern": "missing",
        "provider": "irrelevant",
        "search": false,
        "synonyms": "missing",
        "version": "present"
      },
      "contact": {
        "email": "clement.jonquet@inrae.fr",
        "github": "jonquet",
        "name": "Clement Jonquet",
        "orcid": "0000-0002-2404-1582"
      },
      "description": "A vocabulary and ontology repository for agronomy and related domains.",
      "example": "ENVO",
      "homepage": "http://agroportal.lirmm.fr",
      "name": "AgroPortal",
      "prefix": "agroportal",
      "provider_uri_format": "http://agroportal.lirmm.fr/ontologies/$1"
    },
    {
      "availability": {
        "alternate_providers": "missing",
        "contact": "missing",
        "description": "missing",
        "example": "missing",
        "fair": true,
        "homepage": "missing",
        "license": "present",
        "name": "required",
        "pattern": "missing",
        "provider": "required",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "bioregistry_prefix": "biolink",
      "contact": {
        "email": "deepak.unni3@lbl.gov",
        "github": "deepakunni3",
        "name": "Deepak Unni",
        "orcid": "0000-0002-3583-7340"
      },
      "description": "A modeling paradigm-specific registry of prefixes and their URL expansions",
      "download": "https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.yaml",
      "example": "doi",
      "homepage": "https://github.com/biolink/biolink-model",
      "name": "Biolink Model Registry",
      "prefix": "biolink"
    },
    {
      "availability": {
        "alternate_providers": "irrelevant",
        "contact": "present",
        "description": "required",
        "example": "irrelevant",
        "fair": false,
        "fair_note": "The API for BioPortal requires authentication",
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "irrelevant",
        "search": false,
        "synonyms": "missing",
        "version": "required"
      },
      "bioregistry_prefix": "bioportal",
      "contact": {
        "email": "jgraybeal@stanford.edu",
        "github": "graybeal",
        "name": "John Graybeal",
        "orcid": "0000-0001-6875-5360"
      },
      "description": "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry",
      "example": "CHEBI",
      "homepage": "https://bioportal.bioontology.org/",
      "name": "BioPortal Prefixes",
      "prefix": "bioportal",
      "provider_uri_format": "https://bioportal.bioontology.org/ontologies/$1"
    },
    {
      "availability": {
        "alternate_providers": "present",
        "contact": "present",
        "description": "required",
        "example": "required",
        "fair": true,
        "homepage": "required",
        "license": "present",
        "name": "required",
        "pattern": "present",
        "provider": "present",
        "search": false,
        "synonyms": "present",
        "version": "present"
      },
      "bioregistry_prefix": "bioregistry",
      "contact": {
        "email": "cthoyt@gmail.com",
        "github": "cthoyt",
        "name": "Charles Tapley Hoyt",
        "orcid": "0000-0003-4423-4370"
      },
      "description": "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.",
      "download": "https://bioregistry.io/api/registry/",
      "example": "chebi",
      "homepage": "https://bioregistry.io",
      "name": "Bioregistry",
      "prefix": "bioregistry",
      "provider_uri_format": "https://bioregistry.io/registry/$1",
      "resolver_type": "resolver",
      "resolver_uri_format": "https://bioregistry.io/$1:$2"
    },
    {
      "availability": {
        "alternate_providers": "missing",
        "contact": "missing",
        "description": "missing",
        "example": "missing",
        "fair": true,
        "fair_note": "Data is available but requires custom parser",
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "required",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "Amos.Bairoch@sib.swiss",
        "github": "AmosBairoch",
        "name": "Amos Bairoch",
        "orcid": "0000-0003-2826-6444"
      },
      "description": "The set of prefixes used in the Cellosaurus resource",
      "example": "4DN",
      "homepage": "https://web.expasy.org/cellosaurus/",
      "name": "Cellosaurus Registry",
      "prefix": "cellosaurus"
    },
    {
      "availability": {
        "alternate_providers": "missing",
        "contact": "missing",
        "description": "missing",
        "example": "missing",
        "fair": false,
        "fair_note": "No additional metadata included besides name in ontology",
        "homepage": "missing",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "missing",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "bioregistry_prefix": "cheminf",
      "contact": {
        "email": "egon.willighagen@gmail.com",
        "github": "egonw",
        "name": "Egon Willighagen",
        "orcid": "0000-0001-7542-0286"
      },
      "description": "Contains entries for various database identifiers",
      "example": "000140",
      "homepage": "https://github.com/semanticchemistry/semanticchemistry",
      "name": "Chemical Information Ontology",
      "prefix": "cheminf",
      "provider_uri_format": "https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http%3A%2F%2Fsemanticscience.org%2Fresource%2FCHEMINF_$1"
    },
    {
      "availability": {
        "alternate_providers": "irrelevant",
        "contact": "missing",
        "description": "missing",
        "example": "irrelevant",
        "fair": true,
        "homepage": "irrelevant*",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "irrelevant",
        "search": true,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "helpdesk@cropontology-curationtool.org",
        "name": "Crop Ontology Support"
      },
      "description": "The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms",
      "download": "https://github.com/bioversity/Crop-Ontology/blob/master/public/dump.json",
      "example": "CO_010",
      "homepage": "https://www.cropontology.org",
      "name": "Crop Ontology Curation Tool",
      "prefix": "cropoct",
      "provider_uri_format": "https://www.cropontology.org/ontology/$1"
    },
    {
      "availability": {
        "alternate_providers": "irrelevant",
        "contact": "present",
        "description": "required",
        "example": "irrelevant",
        "fair": false,
        "fair_note": "The API for EcoPortal requires authentication",
        "homepage": "present",
        "license": "present",
        "name": "required",
        "pattern": "missing",
        "provider": "irrelevant",
        "search": false,
        "synonyms": "missing",
        "version": "present"
      },
      "contact": {
        "email": "service.centre@lifewatch.eu",
        "name": "EcoPortal Support"
      },
      "description": "The LifeWatch ERIC repository of semantic resources for the ecological domain.",
      "example": "ALIENSPECIES",
      "homepage": "http://ecoportal.lifewatchitaly.eu",
      "name": "EcoPortal",
      "prefix": "ecoportal",
      "provider_uri_format": "http://ecoportal.lifewatchitaly.eu/ontologies/$1"
    },
    {
      "availability": {
        "alternate_providers": "missing",
        "contact": "required",
        "description": "required",
        "example": "missing",
        "fair": false,
        "fair_note": "The API for FAIRsharing requires authentication",
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "missing",
        "search": true,
        "synonyms": "missing",
        "version": "missing"
      },
      "bioregistry_prefix": "fairsharing",
      "contact": {
        "email": "allyson.lister@oerc.ox.ac.uk",
        "github": "allysonlister",
        "name": "Allyson Lister",
        "orcid": "0000-0002-7702-4495"
      },
      "description": "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies.",
      "example": "FAIRsharing.62qk8w",
      "homepage": "https://fairsharing.org/",
      "name": "FAIRSharing",
      "prefix": "fairsharing",
      "provider_uri_format": "https://fairsharing.org/$1"
    },
    {
      "availability": {
        "alternate_providers": "present",
        "contact": "missing",
        "description": "present",
        "example": "present",
        "fair": true,
        "homepage": "present",
        "license": "missing",
        "name": "required",
        "pattern": "present",
        "provider": "present",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "cjmungall@lbl.gov",
        "github": "cmungall",
        "name": "Chris Mungall",
        "orcid": "0000-0002-6601-2165"
      },
      "description": "A database-specific registry supporting curation in the Gene Ontology",
      "download": "https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml",
      "example": "CHEBI",
      "homepage": "http://geneontology.org/",
      "name": "Gene Ontology Registry",
      "prefix": "go"
    },
    {
      "availability": {
        "alternate_providers": "present",
        "contact": "missing",
        "description": "required",
        "example": "required",
        "fair": true,
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "required",
        "provider": "required",
        "search": true,
        "synonyms": "missing",
        "version": "missing"
      },
      "bioregistry_prefix": "identifiers.namespace",
      "contact": {
        "email": "hhe@ebi.ac.uk",
        "github": "hHermjakob",
        "name": "Henning Hermjakob",
        "orcid": "0000-0001-8479-0262"
      },
      "description": "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession).",
      "download": "https://registry.api.identifiers.org/resolutionApi/getResolverDataset",
      "example": "chebi",
      "homepage": "https://identifiers.org",
      "name": "Identifiers.org",
      "prefix": "miriam",
      "provider_uri_format": "https://registry.identifiers.org/registry/$1",
      "resolver_type": "resolver",
      "resolver_uri_format": "https://identifiers.org/$1:$2"
    },
    {
      "availability": {
        "alternate_providers": "present",
        "contact": "missing",
        "description": "required",
        "example": "required",
        "fair": true,
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "required",
        "provider": "required",
        "search": false,
        "synonyms": "present",
        "version": "missing"
      },
      "contact": {
        "email": "cdl@www.cdlib.org",
        "name": "California Digital Library Support"
      },
      "description": "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org",
      "download": "https://n2t.net/e/n2t_full_prefixes.yaml",
      "example": "chebi",
      "homepage": "https://n2t.net",
      "name": "Name-to-Thing",
      "prefix": "n2t",
      "provider_uri_format": "https://n2t.net/$1:",
      "resolver_type": "resolver",
      "resolver_uri_format": "https://n2t.net/$1:$2"
    },
    {
      "availability": {
        "alternate_providers": "missing",
        "contact": "missing",
        "description": "missing",
        "example": "required",
        "fair": false,
        "fair_note": "Requires web scraping",
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "missing",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "gb-admin@ncbi.nlm.nih.gov",
        "name": "GenBank Support"
      },
      "description": "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources",
      "example": "ECOCYC",
      "homepage": "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/",
      "name": "National Center for Biotechnology Information Registry",
      "prefix": "ncbi"
    },
    {
      "availability": {
        "alternate_providers": "missing",
        "contact": "required",
        "description": "required",
        "example": "missing",
        "fair": true,
        "homepage": "required",
        "license": "required",
        "name": "required",
        "pattern": "missing",
        "provider": "missing",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "cjmungall@lbl.gov",
        "github": "cmungall",
        "name": "Chris Mungall",
        "orcid": "0000-0002-6601-2165"
      },
      "description": "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate.",
      "download": "http://www.obofoundry.org/registry/ontologies.yml",
      "example": "chebi",
      "homepage": "http://www.obofoundry.org/",
      "name": "OBO Foundry",
      "prefix": "obofoundry",
      "provider_uri_format": "http://www.obofoundry.org/ontology/$1",
      "resolver_type": "resolver",
      "resolver_uri_format": "http://purl.obolibrary.org/obo/$1_$2"
    },
    {
      "availability": {
        "alternate_providers": "irrelevant",
        "contact": "present",
        "description": "required",
        "example": "irrelevant",
        "fair": true,
        "homepage": "present",
        "license": "required",
        "name": "required",
        "pattern": "missing",
        "provider": "irrelevant",
        "search": true,
        "synonyms": "missing",
        "version": "present"
      },
      "contact": {
        "email": "henriette007@ebi.ac.uk",
        "github": "henrietteharmse",
        "name": "Henriette Harmse",
        "orcid": "0000-0001-7251-9504"
      },
      "description": "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. ",
      "example": "chebi",
      "homepage": "https://www.ebi.ac.uk/ols",
      "name": "Ontology Lookup Service",
      "prefix": "ols",
      "provider_uri_format": "https://www.ebi.ac.uk/ols/ontologies/$1"
    },
    {
      "availability": {
        "alternate_providers": "irrelevant",
        "contact": "required",
        "description": "required",
        "example": "irrelevant",
        "fair": false,
        "fair_note": "No API available, data download requires web scraping",
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "irrelevant",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "yongqunh@med.umich.edu",
        "github": "yongqunh",
        "name": "Yongqun Oliver He",
        "orcid": "0000-0001-9189-9661"
      },
      "description": " Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis.",
      "example": "AGRO",
      "homepage": "http://www.ontobee.org/",
      "name": "OntoBee",
      "prefix": "ontobee",
      "provider_uri_format": "http://www.ontobee.org/ontology/$1",
      "resolver_type": "lookup",
      "resolver_uri_format": "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2"
    },
    {
      "availability": {
        "alternate_providers": "present",
        "contact": "missing",
        "description": "missing",
        "example": "missing",
        "fair": true,
        "homepage": "missing",
        "license": "missing",
        "name": "missing",
        "pattern": "missing",
        "provider": "required",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "richard@cyganiak.de",
        "github": "cygri",
        "name": "Richard Cyganiak",
        "orcid": "0000-0001-9950-5209"
      },
      "description": "A web-developer centric archive of prefixes and URI prefixes",
      "download": "https://prefix.cc/context.jsonld",
      "example": "foaf",
      "homepage": "https://prefix.cc/",
      "name": "Prefix.cc",
      "prefix": "prefixcc",
      "provider_uri_format": "https://prefix.cc/$1"
    },
    {
      "availability": {
        "alternate_providers": "required",
        "contact": "missing",
        "description": "present",
        "example": "present",
        "fair": true,
        "homepage": "present",
        "license": "missing",
        "name": "required",
        "pattern": "present",
        "provider": "present",
        "search": true,
        "synonyms": "present",
        "version": "missing"
      },
      "contact": {
        "email": "michel.dumontier@gmail.com",
        "github": "micheldumontier",
        "name": "Michel Dumontier",
        "orcid": "0000-0003-4727-9435"
      },
      "description": "A registry of commonly used prefixes in the life sciences and linked data",
      "download": "https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/commons_context.jsonld",
      "example": "CHEBI",
      "homepage": "https://prefixcommons.org",
      "name": "Prefix Commons",
      "prefix": "prefixcommons",
      "provider_uri_format": "https://prefixcommons.org/?q=$1"
    },
    {
      "availability": {
        "alternate_providers": "missing",
        "contact": "missing",
        "description": "missing",
        "example": "missing",
        "fair": false,
        "fair_note": "There is not a structured resource that lists what prefixes are covered by Scholia",
        "homepage": "missing",
        "license": "missing",
        "name": "missing",
        "pattern": "missing",
        "provider": "missing",
        "search": false,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "faan@dtu.dk",
        "github": "fnielsen",
        "name": "Finn Årup Nielsen",
        "orcid": "0000-0001-6128-3356"
      },
      "description": "A frontend to Wikidata",
      "example": "doi",
      "homepage": "https://scholia.toolforge.org/",
      "name": "Scholia",
      "prefix": "scholia",
      "resolver_type": "lookup",
      "resolver_uri_format": "https://scholia.toolforge.org/$1/$2"
    },
    {
      "availability": {
        "alternate_providers": "missing",
        "contact": "missing",
        "description": "missing",
        "example": "missing",
        "fair": true,
        "homepage": "required",
        "license": "missing",
        "name": "required",
        "pattern": "missing",
        "provider": "required",
        "search": true,
        "synonyms": "missing",
        "version": "missing"
      },
      "contact": {
        "email": "agb@ebi.ac.uk",
        "github": "bateman-research",
        "name": "Alex Bateman",
        "orcid": "0000-0002-6982-4660"
      },
      "description": "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources.",
      "download": "https://www.uniprot.org/database/?format=rdf",
      "example": "0174",
      "homepage": "https://www.uniprot.org/database/",
      "name": "UniProt Cross-ref database",
      "prefix": "uniprot",
      "provider_uri_format": "https://www.uniprot.org/database/DB-$1"
    },
    {
      "availability": {
        "alternate_providers": "present",
        "contact": "present*",
        "description": "required",
        "example": "present",
        "fair": true,
        "homepage": "present",
        "license": "present*",
        "name": "required",
        "pattern": "present",
        "provider": "present",
        "search": true,
        "synonyms": "missing",
        "version": "present*"
      },
      "bioregistry_prefix": "wikidata",
      "contact": {
        "email": "info@wikidata.org",
        "name": "WikiData Support"
      },
      "description": "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries.",
      "example": "P683",
      "homepage": "https://www.wikidata.org",
      "name": "Wikidata Property",
      "prefix": "wikidata",
      "provider_uri_format": "https://www.wikidata.org/wiki/Property:$1"
    }
  ]
}