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[ISBN:0521065488]", "Oceans, Vent fields: InterRidge Global Database of Active Submarine Hydrothermal Vent Fields. http://www.interridge.org/", "Philippines, Administrative areas: http://www.nscb.gov.ph/activestats/psgc/listreg.asp", "UK & former Empire: Naval ports: http://www.gwpda.org/naval/dkbk0000.htm", "Mexico: Municipalities: http://www.e-local.gob.mx/wb2/ELOCAL/ELOC_Enciclopedia", "Zimbabwe\" Administrative regions: www.law.co.zw/index.php/defence.../155-names-alteration-act.html", "General: The Permanent Committee on Geographical Names for British Official Use: http://www.pcgn.org.uk/", "UK: Coal mines etc: http://www.dmm.org.uk/colliery/index_a.htm", "UK: Placenames: Gazetteer of British Placenames: http://www.gazetteer.co.uk/", "Scotland: An Encyclopedia of Places and Landscape.\" Compiled by D. Munro. [ISBN:04724666]", "Australia: Placenames: http://www.ga.gov.au/map/names/", "Czech protected areas: http://www.cittadella.cz/europarc/index.php?p=index&site=default_enremark: General: Geonames: http://www.geonames.org/", "Islands: UNEP Islands: http://islands.unep.ch/", "This is an alpha version and is only for experimental implementation.", "US: Protected areas: http://www.wilderness.net/", "Antarctic: Bulgarian antarctic Gazetteer: http://id-team.org/apc/Apcbg-Web-New_files/gazet.htm", "Acknowledgements and sources: A large number of sources have been, and are being, used to build gaz.obo. By far", "India: Wetlands: http://envfor.nic.in/divisions/csurv/Wetland%20Inventory.pdf", "Scotland: Coasts: Steers, Coastline of Scotland, 1973. [ISBN:9780521086967]", "Antarctic: Antarctic Place-names Committee; http://www.antarctica.ac.uk/apc/", "Iceland: Halfdanarson (Ed) The Visitor's Key to Iceland. Reykjavik, 1999 (English edition). [ISBN:9979877227]", "Antarctic: http://geonames.usgs.gov/antform.html", "Mines: MINDAT: http://www.mindat.org/", "US: Hot sprinngs: http://www.ngdc.noaa.gov/nndc/struts/results?op_0=eq&v_0=&op_1=l&v_1=&op_2=l&v_2=&t=100006&s=1&d=1", "Australia: Rivers: http://www.environment.nsw.gov.au/vegetation/MajorRivers.htm#lcma", "Meglithic sites: http://www.megalithic.co.uk/", "World Heritage Sites: UN http://whc.unesco.org/en/list: http://whc.unesco.org/en/list", "Oceans and Seas: 4th edition: [IHO:Limits of Oceans and Seas, 1986 (Draft 4th edition)]", "UK: Ports: http://www.abports.co.uk/", "General: Columbia Gazetteer: http://www.columbiagazetteer.org/main/Home.html", "Greenland: Haug, Gazetteer of Greenland. http://www.ntnu.no/ub/formidl/utgivelser/til_opplysning/to_nr15.php", "General: Maps: Perry-Castaneda Library Map Collection: http://www.lib.utexas.edu/maps/", "France: rivers: SANDRE: http://sandre.eaufrance.fr", "Antarctica & Southern Oceans: Stonehouse (ed) Encyclopedia of Antractica and the Southern Oceans. J. Wiley, 2002. [ISBN:0471986658]", "Wetlands: The Wetlands Database: http://www.wetlands.or.id/wdb/wdb.php", "England Fen waterways: Blair, Fenland Waterways of the Middle Level. Imray Laurie Norie, 2009. [ISBN:9781846231896]", "Coral Reefs: Spalding et al. (eds) University of California Press, 2001; World Atlas of Coral Reefs, 2001. [ISBN:0520232550]", "Seamounts: Seamounts Online: http://seamounts.sdsc.edu/", "Japan: Wetlands: http://www.sizenken.biodic.go.jp/pc/wet_en/map.html", "Pacific, Protected areas; http://www.pbif.org/", "RAMSAR sites: http://www.ramsar.org/cda/en/ramsar-documents-list/main/ramsar/1-31-218_4000_0__", "Bangladesh/Inida enclaves: B.R. Whyte, 2002, Waiting for the Esquimo, Melbourne. [ISBN:0734022085]", "North Korea: libweb.uoregon.edu/ec/e-asia/read/northkorgaz.pdf", "South Africa: Reservoirs & dams: http://www.dwaf.gov.za/iwqs/gis_apps/dam/dams/index.htm", "UK Cumbria: http://www.thecumbriadirectory.com/", "Scotland: Islands: Haswell-Smith (1996) \"Scottish Islands\". Edinburgh. [ISBN:0862415799]", "Canada Census Divisions: http://dsp-psd.pwgsc.gc.ca/Collection/Statcan/92F0149X/92F0149XIB-e.html", "General: Maps: UN Map Library: http://www.un.org/depts/dhl/maplib/maplib.htm", "Scotland: Shetland. Shetlopedia: http://shetlopedia.com/Main_Page", "East Himalayas: East Himalaya Gazetteer: http://rbg-web2.rbge.org.uk/nepal/ehgaz/index.html", "the most used are the pages of Wikipedia, which seem to be quite accurate in this domain. Thanks to all", "used quite extensively and I wish to acknowledge, with thanks, the following (which is not exhaustive):" ]
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        "title" : "Ontology for genetic interval",
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        "description" : "OGI formalized the genomic element by defining an upper class 'genetic interval'.\n\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.\" \n\nRelated paper:\n\n1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)\nYu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)\nYu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)\n\n\n",
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          "dc:abstract" : [ "Sickle cell disease (SCD) is one of the most common monogenic diseases in humans with multiple phenotypic expressions that can manifest as both acute and chronic complications. Although described more than a century ago, challenges in comprehensive disease management and collaborative research on this disease are compounded by the complex molecular and clinical phenotypes of SCD, environmental and psychosocial factors, limited therapeutic options and ambiguous terminology. This ambiguous terminology has hampered the integration and interoperability of existing SCD knowledge, and SCD research translation. The SCD Ontology (SCDO), which is a community-driven integrative and universal knowledge representation system for SCD, overcomes this issue by providing a controlled vocabulary developed by a group of experts in both SCD and ontology design. SCDO is the first and most comprehensive standardized human- and machine-readable resource that unambiguously represents terminology and concepts about SCD for researchers, patients and clinicians. It is built around the central concept ‘hemoglobinopathy’, allowing inclusion of non-SCD haemoglobinopathies, such as thalassaemias, which may interfere with or influence SCD phenotypic manifestations. This collaboratively developed ontology constitutes a comprehensive knowledge management system and standardized terminology of various SCD-related factors. The SCDO will promote interoperability of different research datasets, facilitate seamless data sharing and collaborations, including meta-analyses within the SCD community, and support the development and curation of data-basing and clinical informatics in SCD." ],
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        "description" : "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators.",
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          "comment" : [ "The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (\"bfo_classes_only.owl\") includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (\"bfo.owl\"). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.\n \nIf you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies. \n \nSee the BFO 2 release notes for further information about BFO 2. Please note that the current release of bfo.owl uses temporal relations when the subject or object is a continuant, a major change from BFO 1.", "This is an early version of BFO version 2 and has not yet been extensively reviewed by the project team members. Please see the project site http://code.google.com/p/bfo/ , the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel , the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx . This ontology is generated from a specification at http://bfo.googlecode.com/svn/trunk/src/ontology/owl-group/specification/ and with the code that generates the OWL version in http://bfo.googlecode.com/svn/trunk/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif" ],
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          "seeAlso" : [ "", "bfo-discuss", "bfo-devel", "owl", "bfo-owl-devel", "The SEPIO ontology is in its early stages of development, undergoing iterative refine,ent as new requirements emerge and alignment wiht existing standards is explored. The SEPIO core file imports two files which can be resolved at the URLs below:\n\nIAO ontology-metadata import: https://raw.githubusercontent.com/monarch-initiative/SEPIO-ontology/master/src/ontology/imports/ontology-metadata.owl\n\nbfo mireot: https://raw.githubusercontent.com/monarch-initiative/SEPIO-ontology/master/src/ontology/mireots/bfo.owl" ]
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          "title" : [ "Semanticscience Integrated Ontology (SIO)" ],
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