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    "deprecated": false,
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    "deprecated": false,
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    "homepage": "http://genome.crg.es/datasets/abs2005/",
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    "deprecated": false,
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    "deprecated": false,
    "description": "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.",
    "homepage": "http://addgene.org/",
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    "name": "Addgene Plasmid Repository",
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    "uri_format": "http://addgene.org/$1"
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    "description": "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology.",
    "homepage": "https://animaldiversity.org/",
    "id": "00000492",
    "name": "Animal Diversity Web",
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    "sampleId": "Lycalopex_vetulus",
    "uri_format": "https://animaldiversity.org/accounts/$1/"
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    "deprecated": false,
    "description": "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration.",
    "homepage": "http://www.affymetrix.com/",
    "id": "00000394",
    "name": "Affymetrix Probeset",
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "name": "Allergome",
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    "deprecated": false,
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    "homepage": "http://amoebadb.org/amoeba/",
    "id": "00000148",
    "name": "AmoebaDB",
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    "uri_format": "https://amoebadb.org/amoeba/app/record/gene/$1"
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    "deprecated": false,
    "description": "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.",
    "homepage": "http://antibodyregistry.org/",
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    "name": "Antibody Registry",
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    "uri_format": "http://antibodyregistry.org/AB_$1"
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    "deprecated": false,
    "description": "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.",
    "homepage": "http://www.antweb.org/",
    "id": "00000146",
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    "uri_format": "http://www.antweb.org/specimen.do?name=$1"
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    "deprecated": false,
    "description": "International repository of Adverse Outcome Pathways.",
    "homepage": "https://aopwiki.org/",
    "id": "00000617",
    "name": "AOPWiki",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
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    "uri_format": "https://aopwiki.org/aops/$1"
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    "deprecated": false,
    "description": "International repository of Adverse Outcome Pathways.",
    "homepage": "https://aopwiki.org/",
    "id": "00000652",
    "name": "AOPWiki (Key Event)",
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    "uri_format": "https://aopwiki.org/events/$1"
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    "deprecated": false,
    "description": "International repository of Adverse Outcome Pathways.",
    "homepage": "https://aopwiki.org/",
    "id": "00000653",
    "name": "AOPWiki (Key Event Relationship)",
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    "sampleId": "5",
    "uri_format": "https://aopwiki.org/relationships/$1"
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    "deprecated": false,
    "description": "International repository of Adverse Outcome Pathways.",
    "homepage": "https://aopwiki.org/",
    "id": "00000654",
    "name": "AOPWiki (Stressor)",
    "namespaceEmbeddedInLui": false,
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    "prefix": "aop.stressor",
    "sampleId": "9",
    "uri_format": "https://aopwiki.org/stressors/$1"
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    "deprecated": false,
    "description": "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.",
    "homepage": "http://aps.unmc.edu/AP/",
    "id": "00000278",
    "name": "APD",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d{5}$",
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    "sampleId": "01001",
    "uri_format": "http://aps.unmc.edu/AP/database/query_output.php?ID=$1"
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    "deprecated": false,
    "description": "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.",
    "homepage": "http://www.aphidbase.com/aphidbase",
    "id": "00000393",
    "name": "AphidBase Transcript",
    "namespaceEmbeddedInLui": false,
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    "uri_format": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1"
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    "deprecated": false,
    "description": "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous  organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on  quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.",
    "homepage": "http://cicblade.dep.usal.es:8080/APID/",
    "id": "00000576",
    "name": "APID Interactomes",
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    "deprecated": false,
    "description": "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information.",
    "homepage": "http://www.arachnoserver.org/",
    "id": "00000193",
    "name": "ArachnoServer",
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    "sampleId": "AS000060",
    "uri_format": "http://www.arachnoserver.org/toxincard.html?id=$1"
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    "deprecated": false,
    "description": "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.",
    "homepage": "http://ardb.cbcb.umd.edu/",
    "id": "00000522",
    "name": "Antibiotic Resistance Genes Database",
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    "deprecated": false,
    "description": "An Archival Resource Key (ARK) is a Uniform Resource Locator (URL) that is a multi-purpose persistent identifier for information objects of any type.",
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    "deprecated": false,
    "description": "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.",
    "homepage": "https://www.ebi.ac.uk/arrayexpress/",
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    "name": "ArrayExpress",
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        "homepage": "https://www.omicsdi.org/",
        "name": "ArrayExpress through OmicsDI",
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    "deprecated": false,
    "description": "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results.",
    "homepage": "https://www.ebi.ac.uk/arrayexpress/",
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    "name": "ArrayExpress Platform",
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    "uri_format": "https://www.ebi.ac.uk/arrayexpress/arrays/$1"
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    "deprecated": false,
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    "name": "ArrayMap",
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    "prefix": "arraymap",
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    "uri_format": "https://www.arraymap.org/pgx:$1"
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    "deprecated": false,
    "description": "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology.",
    "homepage": "https://arxiv.org/",
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    "namespaceEmbeddedInLui": false,
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    "prefix": "arxiv",
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    "uri_format": "https://arxiv.org/abs/$1"
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    "deprecated": false,
    "description": "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources.",
    "homepage": "http://asap.ahabs.wisc.edu/asap/home.php",
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    "name": "ASAP",
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    "deprecated": false,
    "description": "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).",
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    "id": "00000641",
    "name": "Astrophysics Source Code Library",
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    "deprecated": false,
    "description": "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue.",
    "homepage": "https://www.amazon.co.uk/gp/help/customer/display.html/277-3416785-8259466?ie=UTF8&nodeId=898182",
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    "name": "Amazon Standard Identification Number (ASIN)",
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    "deprecated": false,
    "description": "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information.",
    "homepage": "http://www.aspgd.org/",
    "id": "00000412",
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    "uri_format": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1"
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    "deprecated": false,
    "description": "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information.",
    "homepage": "http://www.aspgd.org/",
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    "uri_format": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1"
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    "deprecated": false,
    "description": "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.",
    "homepage": "https://www.ncbi.nlm.nih.gov/",
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    "description": "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences.",
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    "deprecated": false,
    "description": "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.",
    "homepage": "http://www.whocc.no/atcvet/atcvet_index/",
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    "description": "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.",
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    "description": "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research.",
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    "name": "Bloomington Drosophila Stock Center",
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    "homepage": "http://bgee.unil.ch/bgee/bgee",
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    "deprecated": false,
    "description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.",
    "homepage": "http://bgee.unil.ch/bgee/bgee",
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    "uri_format": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id=$1&stage_children=on"
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    "deprecated": false,
    "description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.",
    "homepage": "http://bigg.ucsd.edu/compartments/",
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    "uri_format": "http://bigg.ucsd.edu/models/universal/metabolites/$1"
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    "description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.",
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    "uri_format": "http://bigg.ucsd.edu/models/$1"
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    "description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.",
    "homepage": "http://bigg.ucsd.edu/universal/reactions",
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    "name": "BiGG Reaction",
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    "description": "BindingDB is the first public database of protein-small molecule affinity data.",
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    "name": "BindingDB",
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    "description": "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.",
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    "description": "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments.",
    "homepage": "http://bugs.sgul.ac.uk/E-BUGS",
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    "deprecated": false,
    "description": "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols.",
    "homepage": "http://bugs.sgul.ac.uk/E-BUGS",
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    "deprecated": false,
    "description": "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases,  providing structural and functional information.",
    "homepage": "https://bykdb.ibcp.fr/BYKdb/",
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    "deprecated": false,
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        "name": "CABRI Cell Lines catalogue in Brussels (SRS)",
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    "homepage": "https://cameo3d.org",
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
    "description": "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and  Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification.",
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    "deprecated": false,
    "description": "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.",
    "homepage": "http://www.candidagenome.org/",
    "id": "00000145",
    "name": "Candida Genome Database",
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    "pattern": "^CAL\\d{7}$",
    "prefix": "cgd",
    "sampleId": "CAL0003079",
    "uri_format": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1"
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    "deprecated": false,
    "description": "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature.",
    "homepage": "http://cgsc.biology.yale.edu/index.php",
    "id": "00000295",
    "name": "CGSC Strain",
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    "pattern": "^\\d+$",
    "prefix": "cgsc",
    "sampleId": "74",
    "uri_format": "http://cgsc.biology.yale.edu/Site.php?ID=$1"
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  "charprot": {
    "deprecated": false,
    "description": "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.",
    "homepage": "http://www.jcvi.org/charprotdb",
    "id": "00000341",
    "name": "CharProt",
    "namespaceEmbeddedInLui": false,
    "pattern": "^CH_\\d+$",
    "prefix": "charprot",
    "sampleId": "CH_001923",
    "uri_format": "http://www.jcvi.org/charprotdb/index.cgi/view/$1"
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  "chebi": {
    "deprecated": false,
    "description": "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.",
    "homepage": "https://www.ebi.ac.uk/chebi/",
    "id": "00000002",
    "name": "ChEBI",
    "namespaceEmbeddedInLui": true,
    "pattern": "^CHEBI:\\d+$",
    "prefix": "chebi",
    "sampleId": "36927",
    "uri_format": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1"
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  "chembl": {
    "deprecated": false,
    "description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.",
    "homepage": "https://www.ebi.ac.uk/chembl",
    "id": "00000799",
    "name": "ChEMBL",
    "namespaceEmbeddedInLui": false,
    "pattern": "^CHEMBL\\d+$",
    "prefix": "chembl",
    "sampleId": "CHEMBL4303805",
    "uri_format": "https://www.ebi.ac.uk/chembl/entity/$1"
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  "chembl.compound": {
    "deprecated": false,
    "description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.",
    "homepage": "https://www.ebi.ac.uk/chembldb/",
    "id": "00000084",
    "name": "ChEMBL compound",
    "namespaceEmbeddedInLui": false,
    "pattern": "^CHEMBL\\d+$",
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        "description": "ChEMBL compound RDF",
        "homepage": "https://github.com/egonw/chembl.rdf",
        "name": "ChEMBL compound RDF",
        "uri_format": "http://linkedchemistry.info/chembl/chemblid/$1"
      },
      {
        "code": "CURATOR_REVIEW",
        "description": "ChEMBL compound RDF through EBI RDF Platform",
        "homepage": "https://www.ebi.ac.uk/rdf/services/chembl/",
        "name": "ChEMBL compound RDF through EBI RDF Platform",
        "uri_format": "https://rdf.ebi.ac.uk/resource/chembl/molecule/$1"
      }
    ],
    "sampleId": "CHEMBL308052",
    "uri_format": "https://www.ebi.ac.uk/chembl/compound/inspect/$1"
  },
  "chembl.target": {
    "deprecated": false,
    "description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.",
    "homepage": "https://www.ebi.ac.uk/chembldb/",
    "id": "00000085",
    "name": "ChEMBL target",
    "namespaceEmbeddedInLui": false,
    "pattern": "^CHEMBL\\d+$",
    "prefix": "chembl.target",
    "providers": [
      {
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        "description": "ChEMBL target RDF",
        "homepage": "https://github.com/egonw/chembl.rdf",
        "name": "ChEMBL target RDF",
        "uri_format": "http://linkedchemistry.info/chembl/chemblid/$1"
      },
      {
        "code": "CURATOR_REVIEW",
        "description": "ChEMBL target RDF through EBI RDF Platform",
        "homepage": "https://rdf.ebi.ac.uk/resource/chembl/",
        "name": "ChEMBL target RDF through EBI RDF Platform",
        "uri_format": "https://rdf.ebi.ac.uk/resource/chembl/target/$1"
      }
    ],
    "sampleId": "CHEMBL3467",
    "uri_format": "https://www.ebi.ac.uk/chembl/target/inspect/$1"
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  "chemdb": {
    "deprecated": false,
    "description": "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds.",
    "homepage": "http://cdb.ics.uci.edu/",
    "id": "00000279",
    "name": "ChemDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "chemdb",
    "sampleId": "3966782",
    "uri_format": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1"
  },
  "chemidplus": {
    "deprecated": false,
    "description": "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.",
    "homepage": "https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp",
    "id": "00000096",
    "name": "ChemIDplus",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+\\-\\d+\\-\\d+$",
    "prefix": "chemidplus",
    "sampleId": "57-27-2",
    "uri_format": "https://chem.nlm.nih.gov/chemidplus/rn/$1"
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  "chemspider": {
    "deprecated": false,
    "description": "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources.",
    "homepage": "http://www.chemspider.com/",
    "id": "00000138",
    "name": "ChemSpider",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "chemspider",
    "sampleId": "56586",
    "uri_format": "http://www.chemspider.com/Chemical-Structure.$1.html"
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  "chickenqtldb": {
    "deprecated": false,
    "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.",
    "homepage": "https://www.animalgenome.org/QTLdb",
    "id": "00000505",
    "name": "Animal Genome Chicken QTL",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "chickenqtldb",
    "sampleId": "14362",
    "uri_format": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"
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  "civic.aid": {
    "deprecated": false,
    "description": "A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC.",
    "homepage": "https://civicdb.org/",
    "id": "00000835",
    "name": "CIViC Assertion",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]+$",
    "prefix": "civic.aid",
    "sampleId": "3",
    "uri_format": "https://civicdb.org/links/assertions/$1"
  },
  "civic.eid": {
    "deprecated": false,
    "description": "Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic \u2018event\u2019 that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract).",
    "homepage": "https://civicdb.org/",
    "id": "00000839",
    "name": "CIViC Evidence",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]+$",
    "prefix": "civic.eid",
    "sampleId": "1199",
    "uri_format": "https://civicdb.org/links/evidence/$1"
  },
  "cl": {
    "deprecated": false,
    "description": "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi.",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/cl",
    "id": "00000110",
    "name": "Cell Type Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^CL:\\d{7}$",
    "prefix": "cl",
    "sampleId": "0000232",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:$1"
  },
  "classyfire": {
    "deprecated": false,
    "description": "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API.",
    "homepage": "http://classyfire.wishartlab.com/",
    "id": "00000770",
    "name": "ClassyFire",
    "namespaceEmbeddedInLui": false,
    "pattern": "^C[0-9]{7}$",
    "prefix": "classyfire",
    "sampleId": "C0004828",
    "uri_format": "http://classyfire.wishartlab.com/tax_nodes/$1"
  },
  "cldb": {
    "deprecated": false,
    "description": "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through  distributors, allowing cell line requests to be made from collections and laboratories.",
    "homepage": "http://bioinformatics.hsanmartino.it/hypercldb/indexes.html",
    "id": "00000390",
    "name": "CLDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^(cl|tum)\\d+$",
    "prefix": "cldb",
    "sampleId": "cl3603",
    "uri_format": "http://bioinformatics.hsanmartino.it/hypercldb/$1.html"
  },
  "clinicaltrials": {
    "deprecated": false,
    "description": "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries",
    "homepage": "https://clinicaltrials.gov/",
    "id": "00000137",
    "name": "ClinicalTrials.gov",
    "namespaceEmbeddedInLui": false,
    "pattern": "^NCT\\d{8}$",
    "prefix": "clinicaltrials",
    "sampleId": "NCT00222573",
    "uri_format": "https://clinicaltrials.gov/ct2/show/$1"
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  "clinvar": {
    "deprecated": false,
    "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.",
    "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
    "id": "00000596",
    "name": "ClinVar Variant",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "clinvar",
    "sampleId": "12345",
    "uri_format": "https://www.ncbi.nlm.nih.gov/clinvar/variation/$1"
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  "clinvar.record": {
    "deprecated": false,
    "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of  the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.",
    "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
    "id": "00000534",
    "name": "ClinVar Record",
    "namespaceEmbeddedInLui": false,
    "pattern": "^RCV\\d+(\\.\\d+)?$",
    "prefix": "clinvar.record",
    "sampleId": "RCV000033555.3",
    "uri_format": "http://www.ncbi.nlm.nih.gov/clinvar/$1/"
  },
  "clinvar.submission": {
    "deprecated": false,
    "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.",
    "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
    "id": "00000595",
    "name": "ClinVar Submission",
    "namespaceEmbeddedInLui": false,
    "pattern": "^SCV\\d+(\\.\\d+)?$",
    "prefix": "clinvar.submission",
    "sampleId": "SCV000151292",
    "uri_format": "http://www.ncbi.nlm.nih.gov/clinvar?term=$1"
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  "clinvar.submitter": {
    "deprecated": false,
    "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs).",
    "homepage": "https://www.ncbi.nlm.nih.gov/clinvar/",
    "id": "00000769",
    "name": "ClinVar Submitter",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "clinvar.submitter",
    "sampleId": "26957",
    "uri_format": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1"
  },
  "combine.specifications": {
    "deprecated": false,
    "description": "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.",
    "homepage": "https://co.mbine.org/standards/",
    "id": "00000258",
    "name": "COMBINE specifications",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+(\\-|\\.|\\w)*$",
    "prefix": "combine.specifications",
    "sampleId": "sbgn.er.level-1.version-1.2",
    "uri_format": "https://co.mbine.org/specifications/$1"
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    "deprecated": false,
    "description": "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases.",
    "homepage": "https://www.ebi.ac.uk/complexportal",
    "id": "00000657",
    "name": "Complex Portal",
    "namespaceEmbeddedInLui": false,
    "pattern": "^CPX-[0-9]+$",
    "prefix": "complexportal",
    "sampleId": "CPX-2158",
    "uri_format": "https://www.ebi.ac.uk/complexportal/complex/$1"
  },
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    "deprecated": false,
    "description": "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks.",
    "homepage": "https://comptox.epa.gov/dashboard",
    "id": "00000658",
    "name": "CompTox Chemistry Dashboard",
    "namespaceEmbeddedInLui": false,
    "pattern": "^DTXSID\\d+$",
    "prefix": "comptox",
    "sampleId": "DTXSID2021028",
    "uri_format": "https://comptox.epa.gov/dashboard/$1"
  },
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    "deprecated": false,
    "description": "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record.",
    "homepage": "http://compluyeast2dpage.dacya.ucm.es/",
    "id": "00000198",
    "name": "Compulyeast",
    "namespaceEmbeddedInLui": false,
    "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
    "prefix": "compulyeast",
    "sampleId": "O08709",
    "uri_format": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1"
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  "conoserver": {
    "deprecated": false,
    "description": "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails.",
    "homepage": "http://www.conoserver.org/",
    "id": "00000254",
    "name": "Conoserver",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "conoserver",
    "sampleId": "2639",
    "uri_format": "http://www.conoserver.org/?page=card&table=protein&id=$1"
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  "coriell": {
    "deprecated": false,
    "description": "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.",
    "homepage": "http://ccr.coriell.org/",
    "id": "00000439",
    "name": "Coriell Cell Repositories",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z]{2}\\d+$",
    "prefix": "coriell",
    "sampleId": "GM17027",
    "uri_format": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1"
  },
  "corrdb": {
    "deprecated": false,
    "description": "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies.",
    "homepage": "https://www.animalgenome.org",
    "id": "00000831",
    "name": "CorrDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]+$",
    "prefix": "corrdb",
    "sampleId": "37232",
    "uri_format": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1"
  },
  "corum": {
    "deprecated": false,
    "description": "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.",
    "homepage": "https://mips.helmholtz-muenchen.de/genre/proj/corum/",
    "id": "00000440",
    "name": "CORUM",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "corum",
    "sampleId": "100",
    "uri_format": "https://mips.helmholtz-muenchen.de/corum/?id=$1"
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    "deprecated": false,
    "description": "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.",
    "homepage": "http://cancer.sanger.ac.uk/cosmic/",
    "id": "00000601",
    "name": "COSMIC Gene",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z0-9]+$",
    "prefix": "cosmic",
    "sampleId": "BRAF",
    "uri_format": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1"
  },
  "covid19": {
    "deprecated": false,
    "description": "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.",
    "homepage": "https://covid19.sfb.uit.no",
    "id": "00000789",
    "name": "SARS-CoV-2",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+_COVID19_[-\\w]+$",
    "prefix": "covid19",
    "sampleId": "SFB_COVID19_MW286762",
    "uri_format": "https://covid19.sfb.uit.no/api/records/$1"
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  "cpc": {
    "deprecated": false,
    "description": "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013.",
    "homepage": "https://worldwide.espacenet.com/classification",
    "id": "00000539",
    "name": "Cooperative Patent Classification",
    "namespaceEmbeddedInLui": false,
    "pattern": "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$",
    "prefix": "cpc",
    "sampleId": "A01M1/026",
    "uri_format": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1"
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  "crisprdb": {
    "deprecated": false,
    "description": "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data.",
    "homepage": "http://crispr.i2bc.paris-saclay.fr/",
    "id": "00000626",
    "name": "CRISPRdb",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]+$",
    "prefix": "crisprdb",
    "sampleId": "551115",
    "uri_format": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1"
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  "cryptodb": {
    "deprecated": false,
    "description": "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
    "homepage": "https://cryptodb.org/cryptodb/",
    "id": "00000149",
    "name": "CryptoDB",
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    "homepage": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/",
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    "uri_format": "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG"
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    "deprecated": false,
    "description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.",
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    "homepage": "http://www.cellsignal.com/catalog/index.html",
    "id": "00000430",
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    "uri_format": "http://www.cellsignal.com/products/$1.html"
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    "deprecated": false,
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    "uri_format": "https://cn.dataone.org/cn/v2/resolve/{$1}"
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    "deprecated": false,
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    "name": "DASHR",
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    "homepage": "https://dashr1.lisanwanglab.org/show-expression-table.php?start=0",
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    "uri_format": "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable"
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    "deprecated": false,
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    "deprecated": false,
    "description": "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.",
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    "deprecated": false,
    "description": "\tDatanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.",
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    "uri_format": "https://datanator.info/reaction/$1"
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    "deprecated": false,
    "description": "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.",
    "homepage": "http://datf.cbi.pku.edu.cn/",
    "id": "00000456",
    "name": "DATF",
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    "uri_format": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1"
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    "deprecated": false,
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        "name": "dbEST through European Nucleotide Archive (ENA)",
        "uri_format": "https://www.ebi.ac.uk/ena/data/view/$1"
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    "deprecated": false,
    "description": "The Database for Bacterial Group II Introns  provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank.",
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    "homepage": "http://github.com/ga4gh/data-object-service-schemas",
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    "deprecated": false,
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    "id": "00000286",
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    "name": "Database of Interacting Proteins",
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    "namespaceEmbeddedInLui": false,
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    "deprecated": false,
    "description": "DOULIX lab-tested standard biological parts, in this case, full length constructs.",
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    "deprecated": false,
    "description": "The Digital Object Identifier System is for identifying content objects in the digital environment.",
    "homepage": "https://www.doi.org/",
    "id": "00000019",
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        "homepage": "https://scholia.toolforge.org/",
        "name": "Scholia",
        "uri_format": "https://scholia.toolforge.org/doi/$1"
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    "sampleId": "10.1038/nbt1156",
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    "deprecated": false,
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    "homepage": "https://www.ebi.ac.uk/ols/ontologies/doid",
    "id": "00000233",
    "name": "Human Disease Ontology",
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        "homepage": "http://disease-ontology.org/",
        "name": "Human Disease Ontology at Northwestern University",
        "uri_format": "http://disease-ontology.org/term/DOID:$1"
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    "sampleId": "11337",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/doid/terms?obo_id=DOID:$1"
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    "deprecated": false,
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    "name": "DOMMINO",
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    "sampleId": "2GC4",
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    "deprecated": false,
    "description": "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes.",
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    "deprecated": false,
    "description": "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models.",
    "homepage": "http://doqcs.ncbs.res.in/",
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    "deprecated": false,
    "description": "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways.",
    "homepage": "http://doqcs.ncbs.res.in/",
    "id": "00000135",
    "name": "Database of Quantitative Cellular Signaling: Pathway",
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    "homepage": "http://www.dpvweb.net/",
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    "deprecated": false,
    "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information.",
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    "deprecated": false,
    "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information.",
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    "uri_format": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA"
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    "deprecated": false,
    "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information.",
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    "id": "00000299",
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    "deprecated": false,
    "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information.",
    "homepage": "http://www.antirrhinum.net/",
    "id": "00000298",
    "name": "DragonDB Protein",
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    "uri_format": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide"
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    "description": "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides  information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene.",
    "homepage": "http://flyrnai.org/",
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    "name": "DRSC",
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    "description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information.",
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    "deprecated": false,
    "description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.",
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    "deprecated": false,
    "description": "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.",
    "homepage": "https://www.ebi.ac.uk/intenz/",
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        "name": "ExploreEnz at Trinity College",
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        "name": "Enzyme nomenclature database, ExPASy (Expert Protein Analysis System)",
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    "description": "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.",
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    "deprecated": false,
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    "homepage": "https://www.ebi.ac.uk/ols/ontologies/eco",
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    "deprecated": false,
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    "homepage": "http://ecogene.org/",
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    "deprecated": false,
    "description": "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.",
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    "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction \u2014 as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities.",
    "homepage": "http://www.e-cyanobacterium.org/bcs/entity/",
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    "homepage": "https://www.e-cyanobacterium.org/experiments-repository/",
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    "deprecated": false,
    "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction \u2014 as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models.",
    "homepage": "http://e-cyanobacterium.org/models/",
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    "uri_format": "http://e-cyanobacterium.org/models/model/$1/"
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    "deprecated": false,
    "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction \u2014 as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules.",
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    "deprecated": false,
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    "deprecated": false,
    "description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes.",
    "homepage": "https://plants.ensembl.org/",
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    "deprecated": false,
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    "deprecated": false,
    "description": "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.",
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    "homepage": "https://www.ebi.ac.uk/ols/ontologies/envo",
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    "description": "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population.",
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    "namespaceEmbeddedInLui": false,
    "pattern": "^FR\\-FCM\\-\\w{4}$",
    "prefix": "flowrepository",
    "sampleId": "FR-FCM-ZYGW",
    "uri_format": "https://flowrepository.org/id/$1"
  },
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    "deprecated": false,
    "description": "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body.  Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/fma/",
    "id": "00000067",
    "name": "FMA",
    "namespaceEmbeddedInLui": true,
    "pattern": "^FMA:\\d+$",
    "prefix": "fma",
    "sampleId": "67112",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/fma/terms?obo_id=FMA:$1"
  },
  "foodb.compound": {
    "deprecated": false,
    "description": "FooDB is resource on food and its constituent compounds. It includes data on the compound\u2019s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.",
    "homepage": "http://foodb.ca/foods",
    "id": "00000530",
    "name": "FooDB Compound",
    "namespaceEmbeddedInLui": false,
    "pattern": "^FDB\\d+$",
    "prefix": "foodb.compound",
    "sampleId": "FDB002100",
    "uri_format": "http://foodb.ca/compounds/$1"
  },
  "foodon": {
    "deprecated": false,
    "description": "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.",
    "homepage": "https://foodon.org",
    "id": "00000661",
    "name": "FoodOn Food Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^FOODON:[0-9]{8}$",
    "prefix": "foodon",
    "sampleId": "03307879",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:$1"
  },
  "fplx": {
    "deprecated": false,
    "description": "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.",
    "homepage": "https://sorgerlab.github.io/famplex",
    "id": "00000651",
    "name": "FamPlex",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[a-zA-Z0-9][A-Za-z0-9_]+$",
    "prefix": "fplx",
    "sampleId": "RAS",
    "uri_format": "https://sorgerlab.github.io/famplex/$1"
  },
  "fsnp": {
    "deprecated": false,
    "description": "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.",
    "homepage": "http://compbio.cs.queensu.ca/F-SNP/",
    "id": "00000496",
    "name": "F-SNP",
    "namespaceEmbeddedInLui": false,
    "pattern": "^rs\\d+$",
    "prefix": "fsnp",
    "sampleId": "rs17852708",
    "uri_format": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=$1"
  },
  "funcbase.fly": {
    "deprecated": false,
    "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.",
    "homepage": "http://func.mshri.on.ca/fly",
    "id": "00000461",
    "name": "FuncBase Fly",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "funcbase.fly",
    "sampleId": "10194",
    "uri_format": "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1"
  },
  "funcbase.human": {
    "deprecated": false,
    "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.",
    "homepage": "http://func.mshri.on.ca/human/",
    "id": "00000462",
    "name": "FuncBase Human",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "funcbase.human",
    "sampleId": "119514",
    "uri_format": "http://func.mshri.on.ca/human/genes/list_functional_scores/$1"
  },
  "funcbase.mouse": {
    "deprecated": false,
    "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.",
    "homepage": "http://func.mshri.on.ca/mouse/",
    "id": "00000463",
    "name": "FuncBase Mouse",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "funcbase.mouse",
    "sampleId": "1351341",
    "uri_format": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1"
  },
  "funcbase.yeast": {
    "deprecated": false,
    "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.",
    "homepage": "http://func.mshri.on.ca/yeast",
    "id": "00000464",
    "name": "FuncBase Yeast",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "funcbase.yeast",
    "sampleId": "2701",
    "uri_format": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1"
  },
  "funderregistry": {
    "deprecated": false,
    "description": "The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world.",
    "homepage": "https://www.crossref.org/",
    "id": "00000847",
    "name": "FunderRegistry",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d{9,9}$",
    "prefix": "funderregistry",
    "sampleId": "100000001",
    "uri_format": "http://data.crossref.org/fundingdata/funder/10.13039/$1"
  },
  "fungidb": {
    "deprecated": false,
    "description": "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.",
    "homepage": "https://fungidb.org/fungidb",
    "id": "00000365",
    "name": "FungiDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Za-z_0-9]+$",
    "prefix": "fungidb",
    "sampleId": "CNBG_0001",
    "uri_format": "https://fungidb.org/fungidb/app/record/gene/$1"
  },
  "ga4ghdos": {
    "deprecated": false,
    "description": "Assists in resolving data across cloud resources.",
    "homepage": "http://github.com/ga4gh/data-object-service-schemas",
    "id": "00000671",
    "name": "Data Object Service",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[a-zA-Z0-9\\-:#/\\.]+$",
    "prefix": "ga4ghdos",
    "sampleId": "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d",
    "uri_format": "https://dataguids.org/ga4gh/dos/v1/dataobjects/$1"
  },
  "gabi": {
    "deprecated": false,
    "description": "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.",
    "homepage": "http://www.gabipd.org/",
    "id": "00000164",
    "name": "GABI",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "gabi",
    "sampleId": "2679240",
    "uri_format": "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject"
  },
  "gateway": {
    "deprecated": false,
    "description": "The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access.",
    "homepage": "https://www.hdruk.ac.uk",
    "id": "00000796",
    "name": "gateway",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$",
    "prefix": "gateway",
    "sampleId": "fd8d0743-344a-4758-bb97-f8ad84a37357",
    "uri_format": "https://web.www.healthdatagateway.org/dataset/$1"
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  "gcst": {
    "deprecated": false,
    "description": "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide.",
    "homepage": "https://www.ebi.ac.uk",
    "id": "00000715",
    "name": "GWAS Catalog",
    "namespaceEmbeddedInLui": false,
    "pattern": "^GCST\\d{6}\\d*$",
    "prefix": "gcst",
    "sampleId": "GCST000035",
    "uri_format": "https://www.ebi.ac.uk/gwas/studies/$1"
  },
  "gdc": {
    "deprecated": false,
    "description": "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.",
    "homepage": "https://gdc.cancer.gov",
    "id": "00000604",
    "name": "Genomic Data Commons Data Portal",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$",
    "prefix": "gdc",
    "sampleId": "ae8c77fe-e6c8-44d5-8265-4a38c637bbef",
    "uri_format": "https://portal.gdc.cancer.gov/cases/$1"
  },
  "gdsc": {
    "deprecated": false,
    "description": "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies.",
    "homepage": "https://www.cancerrxgene.org",
    "id": "00000678",
    "name": "Genomics of Drug Sensitivity in Cancer",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]+$",
    "prefix": "gdsc",
    "sampleId": "1242",
    "uri_format": "https://www.cancerrxgene.org/translation/Drug/$1"
  },
  "genatlas": {
    "deprecated": false,
    "description": "GenAtlas is a database containing information on human genes, markers and phenotypes.",
    "homepage": "http://genatlas.medecine.univ-paris5.fr/",
    "id": "00000208",
    "name": "Genatlas",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "genatlas",
    "sampleId": "HBB",
    "uri_format": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1"
  },
  "genecards": {
    "deprecated": false,
    "description": "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.",
    "homepage": "http://www.genecards.org/",
    "id": "00000323",
    "name": "GeneCards",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Za-z-0-9_]+(\\@)?$",
    "prefix": "genecards",
    "sampleId": "ABL1",
    "uri_format": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1"
  },
  "genedb": {
    "deprecated": false,
    "description": "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.",
    "homepage": "https://www.genedb.org/",
    "id": "00000106",
    "name": "GeneDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[\\w\\d\\.-]*$",
    "prefix": "genedb",
    "sampleId": "LinJ.20.0070",
    "uri_format": "https://www.genedb.org/gene/$1"
  },
  "genefarm": {
    "deprecated": false,
    "description": "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.",
    "homepage": "http://urgi.versailles.inra.fr/Genefarm/",
    "id": "00000211",
    "name": "GeneFarm",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "genefarm",
    "sampleId": "4892",
    "uri_format": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1"
  },
  "genetree": {
    "deprecated": false,
    "description": "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.",
    "homepage": "http://www.ensembl.org/",
    "id": "00000214",
    "name": "GeneTree",
    "namespaceEmbeddedInLui": false,
    "pattern": "^ENSGT\\d+$",
    "prefix": "genetree",
    "sampleId": "ENSGT00550000074763",
    "uri_format": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1"
  },
  "genewiki": {
    "deprecated": false,
    "description": "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI.",
    "homepage": "http://en.wikipedia.org/wiki/Gene_Wiki",
    "id": "00000487",
    "name": "Gene Wiki",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "genewiki",
    "sampleId": "1017",
    "uri_format": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1"
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  "genpept": {
    "deprecated": false,
    "description": "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.",
    "homepage": "https://www.ncbi.nlm.nih.gov/protein",
    "id": "00000345",
    "name": "GenPept",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w{3}\\d{5}(\\.\\d+)?$",
    "prefix": "genpept",
    "sampleId": "CAA71118.1",
    "uri_format": "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept"
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  "genprop": {
    "deprecated": false,
    "description": "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.",
    "homepage": "https://www.ebi.ac.uk/interpro/genomeproperties/",
    "id": "00000443",
    "name": "Genome Properties",
    "namespaceEmbeddedInLui": false,
    "pattern": "^GenProp\\d+$",
    "prefix": "genprop",
    "sampleId": "GenProp0699",
    "uri_format": "https://www.ebi.ac.uk/interpro/genomeproperties/#$1"
  },
  "geo": {
    "deprecated": false,
    "description": "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.",
    "homepage": "https://www.ncbi.nlm.nih.gov/geo/",
    "id": "00000054",
    "name": "GEO",
    "namespaceEmbeddedInLui": false,
    "pattern": "^G(PL|SM|SE|DS)\\d+$",
    "prefix": "geo",
    "sampleId": "GDS1234",
    "uri_format": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1"
  },
  "geogeo": {
    "deprecated": false,
    "description": "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction.  We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\".",
    "homepage": "https://github.com/ufbmi",
    "id": "00000824",
    "name": "Geographical Entity Ontology",
    "namespaceEmbeddedInLui": false,
    "pattern": "^GEO_[0-9]{9}$",
    "prefix": "geogeo",
    "sampleId": "GEO_000000021",
    "uri_format": "http://purl.obolibrary.org/obo/$1"
  },
  "giardiadb": {
    "deprecated": false,
    "description": "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
    "homepage": "https://giardiadb.org/giardiadb/",
    "id": "00000151",
    "name": "GiardiaDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "giardiadb",
    "sampleId": "GL50803_102438",
    "uri_format": "https://giardiadb.org/giardiadb/app/record/gene/$1"
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    "deprecated": false,
    "description": "GitHub is an online host of Git source code repositories.",
    "homepage": "https://github.com/",
    "id": "00000853",
    "name": "github",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[a-zA-Z0-9-_]+/[a-zA-Z0-9-_]+$",
    "prefix": "github",
    "sampleId": "identifiers-org/registry",
    "uri_format": "https://github.com/$1"
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  "gitlab": {
    "deprecated": false,
    "description": "GitLab is The DevOps platform that empowers organizations to maximize the overall return on software development by delivering software faster and efficiently, while strengthening security and compliance. With GitLab, every team in your organization can collaboratively plan, build, secure, and deploy software to drive business outcomes faster with complete transparency, consistency and traceability.",
    "homepage": "https://gitlab.com/",
    "id": "00000901",
    "name": "GitLab",
    "namespaceEmbeddedInLui": false,
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    "prefix": "gitlab",
    "sampleId": "morpheus.lab/morpheus",
    "uri_format": "https://gitlab.com/$1"
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  "glida.gpcr": {
    "deprecated": false,
    "description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.",
    "homepage": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/",
    "id": "00000493",
    "name": "GLIDA GPCR",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z-_0-9]+$",
    "prefix": "glida.gpcr",
    "sampleId": "ACM1_HUMAN",
    "uri_format": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1"
  },
  "glida.ligand": {
    "deprecated": false,
    "description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.",
    "homepage": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/",
    "id": "00000494",
    "name": "GLIDA Ligand",
    "namespaceEmbeddedInLui": false,
    "pattern": "^L\\d+$",
    "prefix": "glida.ligand",
    "sampleId": "L000001",
    "uri_format": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1"
  },
  "glycoepitope": {
    "deprecated": false,
    "description": "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.",
    "homepage": "https://www.glycoepitope.jp/epitopes/",
    "id": "00000478",
    "name": "GlycoEpitope",
    "namespaceEmbeddedInLui": false,
    "pattern": "^EP\\d{4}$",
    "prefix": "glycoepitope",
    "sampleId": "EP0311",
    "uri_format": "https://www.glycoepitope.jp/epitopes/$1"
  },
  "glycomedb": {
    "deprecated": false,
    "description": "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.",
    "homepage": "https://glytoucan.org/",
    "id": "00000114",
    "name": "GlycomeDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "glycomedb",
    "sampleId": "G77500AY",
    "uri_format": "https://glytoucan.org/Structures/Glycans/$1"
  },
  "glyconavi": {
    "deprecated": false,
    "description": "GlycoNAVI is a website for carbohydrate research. It consists of the \"GlycoNAVI Database\" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the \"GlycoNAVI tools\" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools.",
    "homepage": "https://www.noguchi.or.jp/",
    "id": "00000830",
    "name": "GlycoNAVI",
    "namespaceEmbeddedInLui": false,
    "pattern": "^GN_[A-Za-z0-9]+$",
    "prefix": "glyconavi",
    "sampleId": "GN_G03681DA",
    "uri_format": "https://glyconavi.org/hub/?id=$1"
  },
  "glycopost": {
    "deprecated": false,
    "description": "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines.",
    "homepage": "https://glycopost.glycosmos.org",
    "id": "00000721",
    "name": "GlycoPOST",
    "namespaceEmbeddedInLui": false,
    "pattern": "^GPST[0-9]{6}$",
    "prefix": "glycopost",
    "sampleId": "GPST000024",
    "uri_format": "https://glycopost.glycosmos.org/entry/$1"
  },
  "glytoucan": {
    "deprecated": false,
    "description": "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data.",
    "homepage": "https://glytoucan.org",
    "id": "00000608",
    "name": "GlyTouCan",
    "namespaceEmbeddedInLui": false,
    "pattern": "^G[0-9]{5}[A-Z]{2}$",
    "prefix": "glytoucan",
    "sampleId": "G00054MO",
    "uri_format": "https://glytoucan.org/Structures/Glycans/$1"
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    "deprecated": false,
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    "homepage": "http://gmd.mpimp-golm.mpg.de/",
    "id": "00000274",
    "name": "Golm Metabolome Database",
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    "prefix": "gmd",
    "sampleId": "68513255-fc44-4041-bc4b-4fd2fae7541d",
    "uri_format": "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx"
  },
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    "deprecated": false,
    "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes.",
    "homepage": "http://gmd.mpimp-golm.mpg.de/",
    "id": "00000426",
    "name": "Golm Metabolome Database Analyte",
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    "uri_format": "http://gmd.mpimp-golm.mpg.de/Analytes/$1"
  },
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    "deprecated": false,
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    "homepage": "http://gmd.mpimp-golm.mpg.de/",
    "id": "00000424",
    "name": "Golm Metabolome Database GC-MS spectra",
    "namespaceEmbeddedInLui": false,
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    "sampleId": "53d583d8-40c6-40e1-9296-23f821cd77a5",
    "uri_format": "http://gmd.mpimp-golm.mpg.de/Spectrums/$1"
  },
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    "deprecated": false,
    "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.",
    "homepage": "http://gmd.mpimp-golm.mpg.de/",
    "id": "00000423",
    "name": "Golm Metabolome Database Profile",
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    "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
    "prefix": "gmd.profile",
    "sampleId": "10b38aaf-b977-4950-85b8-f4775f66658d",
    "uri_format": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1"
  },
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    "deprecated": false,
    "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.",
    "homepage": "http://gmd.mpimp-golm.mpg.de/",
    "id": "00000425",
    "name": "Golm Metabolome Database Reference Substance",
    "namespaceEmbeddedInLui": false,
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    "prefix": "gmd.ref",
    "sampleId": "8cf84adb-b4db-4807-ac98-0004247c35df",
    "uri_format": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1"
  },
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    "deprecated": false,
    "description": "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.",
    "homepage": "https://urgi.versailles.inra.fr/gnpis/",
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    "sampleId": "AY109603",
    "uri_format": "https://urgi.versailles.inra.fr/gnpis/#result/term=$1"
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    "deprecated": false,
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    "name": "Gene Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^GO:\\d{7}$",
    "prefix": "go",
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        "homepage": "https://www.ebi.ac.uk/QuickGO/",
        "name": "QuickGO (Gene Ontology browser)",
        "uri_format": "https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:$1"
      },
      {
        "code": "CURATOR_REVIEW",
        "description": "GO Browser",
        "homepage": "http://www.informatics.jax.org/searches/GO_form.shtml",
        "name": "GO Browser",
        "uri_format": "http://www.informatics.jax.org/searches/GO.cgi?id=GO:$1"
      },
      {
        "code": "CURATOR_REVIEW",
        "description": "GO through PANTHER",
        "homepage": "http://www.pantherdb.org/",
        "name": "GO through PANTHER",
        "uri_format": "http://www.pantherdb.org/panther/category.do?categoryAcc=GO:$1"
      }
    ],
    "sampleId": "0006915",
    "uri_format": "http://amigo.geneontology.org/amigo/term/GO:$1"
  },
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    "deprecated": false,
    "description": "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made.",
    "homepage": "http://www.geneontology.org/cgi-bin/references.cgi",
    "id": "00000450",
    "name": "Gene Ontology Reference",
    "namespaceEmbeddedInLui": true,
    "pattern": "^GO_REF:\\d{7}$",
    "prefix": "go_ref",
    "sampleId": "0000041",
    "uri_format": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/goref-$1.md"
  },
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    "deprecated": false,
    "description": "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.",
    "homepage": "https://www.ebi.ac.uk/GOA/",
    "id": "00000196",
    "name": "GOA",
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    "pattern": "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$",
    "prefix": "goa",
    "sampleId": "P12345",
    "uri_format": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1"
  },
  "gold": {
    "deprecated": false,
    "description": "The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.",
    "homepage": "https://gold.jgi.doe.gov/",
    "id": "00000733",
    "name": "Genomes OnLine Database (GOLD)",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z][a-z][0-9]+$",
    "prefix": "gold",
    "sampleId": "Gs0000008",
    "uri_format": "https://gold.jgi.doe.gov/resolver?id=$1"
  },
  "gold.genome": {
    "deprecated": false,
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    "homepage": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi",
    "id": "00000401",
    "name": "GOLD genome",
    "namespaceEmbeddedInLui": false,
    "pattern": "^(Gi|Gc)\\d+$",
    "prefix": "gold.genome",
    "sampleId": "Gi07796",
    "uri_format": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1"
  },
  "gold.meta": {
    "deprecated": false,
    "description": "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by \u2018gold\u2019 prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed \u2018gold\u2019 namespace. \n\nThe GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples.",
    "homepage": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi",
    "id": "00000402",
    "name": "GOLD metadata",
    "namespaceEmbeddedInLui": false,
    "pattern": "^Gm\\d+$",
    "prefix": "gold.meta",
    "sampleId": "Gm00047",
    "uri_format": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1"
  },
  "google.patent": {
    "deprecated": false,
    "description": "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date.",
    "homepage": "https://www.google.com/patents/",
    "id": "00000537",
    "name": "Google Patents",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z]{2}\\d+([A-Z])?$",
    "prefix": "google.patent",
    "sampleId": "US4145692",
    "uri_format": "https://www.google.com/patents/$1"
  },
  "gpcrdb": {
    "deprecated": false,
    "description": "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models.",
    "homepage": "http://www.gpcrdb.org/",
    "id": "00000212",
    "name": "GPCRDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "gpcrdb",
    "sampleId": "RL3R1_HUMAN",
    "uri_format": "http://www.gpcrdb.org/protein/$1/"
  },
  "gpmdb": {
    "deprecated": false,
    "description": "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.",
    "homepage": "http://gpmdb.thegpm.org/",
    "id": "00000649",
    "name": "GPMDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^GPM\\d+$",
    "prefix": "gpmdb",
    "providers": [
      {
        "code": "omicsdi",
        "description": "GPMDB through OmicsDI",
        "homepage": "https://www.omicsdi.org/",
        "name": "GPMDB through OmicsDI",
        "uri_format": "https://www.omicsdi.org/dataset/gpmdb/$1"
      }
    ],
    "sampleId": "GPM32310002988",
    "uri_format": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1"
  },
  "gramene.gene": {
    "deprecated": false,
    "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene.",
    "homepage": "http://www.gramene.org/",
    "id": "00000182",
    "name": "Gramene genes",
    "namespaceEmbeddedInLui": false,
    "pattern": "^GR\\:\\d+$",
    "prefix": "gramene.gene",
    "sampleId": "GR:0080039",
    "uri_format": "http://www.gramene.org/db/genes/search_gene?acc=$1"
  },
  "gramene.growthstage": {
    "deprecated": false,
    "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.",
    "homepage": "http://www.gramene.org/",
    "id": "00000508",
    "name": "Gramene Growth Stage Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^GRO\\:\\d+$",
    "prefix": "gramene.growthstage",
    "sampleId": "0007133",
    "uri_format": "http://www.gramene.org/db/ontology/search?id=GRO:$1"
  },
  "gramene.protein": {
    "deprecated": false,
    "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene.",
    "homepage": "http://www.gramene.org/",
    "id": "00000181",
    "name": "Gramene protein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "gramene.protein",
    "sampleId": "78073",
    "uri_format": "http://www.gramene.org/db/protein/protein_search?protein_id=$1"
  },
  "gramene.qtl": {
    "deprecated": false,
    "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene.",
    "homepage": "http://www.gramene.org/",
    "id": "00000184",
    "name": "Gramene QTL",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "gramene.qtl",
    "sampleId": "CQG5",
    "uri_format": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1"
  },
  "gramene.taxonomy": {
    "deprecated": false,
    "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.",
    "homepage": "http://www.gramene.org/",
    "id": "00000183",
    "name": "Gramene Taxonomy",
    "namespaceEmbeddedInLui": false,
    "pattern": "^GR\\_tax\\:\\d+$",
    "prefix": "gramene.taxonomy",
    "sampleId": "GR_tax:013681",
    "uri_format": "http://www.gramene.org/db/ontology/search?id=$1"
  },
  "greengenes": {
    "deprecated": false,
    "description": "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.",
    "homepage": "http://greengenes.lbl.gov/",
    "id": "00000165",
    "name": "GreenGenes",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "greengenes",
    "sampleId": "100000",
    "uri_format": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1"
  },
  "grid": {
    "deprecated": false,
    "description": "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally.",
    "homepage": "https://www.grid.ac/",
    "id": "00000593",
    "name": "GRID",
    "namespaceEmbeddedInLui": false,
    "pattern": "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$",
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    "uri_format": "https://www.grid.ac/institutes/$1"
  },
  "grin.taxonomy": {
    "deprecated": false,
    "description": "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact.",
    "homepage": "http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en",
    "id": "00000166",
    "name": "GRIN Plant Taxonomy",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "grin.taxonomy",
    "sampleId": "19333",
    "uri_format": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1"
  },
  "grsdb": {
    "deprecated": false,
    "description": "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank.",
    "homepage": "http://bioinformatics.ramapo.edu/GRSDB2/",
    "id": "00000495",
    "name": "GRSDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "grsdb",
    "sampleId": "10142",
    "uri_format": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1"
  },
  "gsso": {
    "deprecated": false,
    "description": "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology.",
    "homepage": "https://bioportal.bioontology.org/",
    "id": "00000712",
    "name": "Gender, Sex, and Sexual Orientation (GSSO) Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^GSSO:\\d{6}$",
    "prefix": "gsso",
    "sampleId": "002368",
    "uri_format": "http://purl.obolibrary.org/obo/GSSO_$1"
  },
  "gtex": {
    "deprecated": false,
    "description": "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation.",
    "homepage": "https://www.gtexportal.org",
    "id": "00000663",
    "name": "GTEx",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w.+$",
    "prefix": "gtex",
    "sampleId": "BRIP1",
    "uri_format": "https://www.gtexportal.org/home/gene/$1"
  },
  "gudmap": {
    "deprecated": false,
    "description": "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract.",
    "homepage": "http://www.gudmap.org/",
    "id": "00000643",
    "name": "GUDMAP",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$",
    "prefix": "gudmap",
    "sampleId": "Q-2958",
    "uri_format": "https://gudmap.org/id/$1"
  },
  "gwascentral.marker": {
    "deprecated": false,
    "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker.",
    "homepage": "https://www.gwascentral.org/markers/",
    "id": "00000542",
    "name": "GWAS Central Marker",
    "namespaceEmbeddedInLui": false,
    "pattern": "^HGVM\\d+$",
    "prefix": "gwascentral.marker",
    "sampleId": "HGVM15354",
    "uri_format": "https://www.gwascentral.org/marker/$1"
  },
  "gwascentral.phenotype": {
    "deprecated": false,
    "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype.",
    "homepage": "https://www.gwascentral.org/phenotypes",
    "id": "00000543",
    "name": "GWAS Central Phenotype",
    "namespaceEmbeddedInLui": false,
    "pattern": "^HGVPM\\d+$",
    "prefix": "gwascentral.phenotype",
    "sampleId": "HGVPM623",
    "uri_format": "https://www.gwascentral.org/phenotype/$1"
  },
  "gwascentral.study": {
    "deprecated": false,
    "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study.",
    "homepage": "https://www.gwascentral.org/studies",
    "id": "00000540",
    "name": "GWAS Central Study",
    "namespaceEmbeddedInLui": false,
    "pattern": "^HGVST\\d+$",
    "prefix": "gwascentral.study",
    "sampleId": "HGVST1828",
    "uri_format": "https://www.gwascentral.org/study/$1"
  },
  "gxa.expt": {
    "deprecated": false,
    "description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments.",
    "homepage": "https://www.ebi.ac.uk/gxa/",
    "id": "00000379",
    "name": "GXA Expt",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[AEP]-\\w{4}-\\d+$",
    "prefix": "gxa.expt",
    "providers": [
      {
        "code": "omicsdi",
        "description": "GXA Expt through OmicsDI",
        "homepage": "https://www.omicsdi.org/",
        "name": "GXA Expt through OmicsDI",
        "uri_format": "https://www.omicsdi.org/dataset/atlas-experiments/$1"
      }
    ],
    "sampleId": "E-MTAB-2037",
    "uri_format": "https://www.ebi.ac.uk/gxa/experiments/$1"
  },
  "gxa.gene": {
    "deprecated": false,
    "description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.",
    "homepage": "https://www.ebi.ac.uk/gxa/",
    "id": "00000378",
    "name": "GXA Gene",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "gxa.gene",
    "sampleId": "AT4G01080",
    "uri_format": "https://www.ebi.ac.uk/gxa/genes/$1"
  },
  "hamap": {
    "deprecated": false,
    "description": "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.",
    "homepage": "https://hamap.expasy.org/",
    "id": "00000292",
    "name": "HAMAP",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MF_\\d+$",
    "prefix": "hamap",
    "sampleId": "MF_01400",
    "uri_format": "https://hamap.expasy.org/unirule/$1"
  },
  "hcvdb": {
    "deprecated": false,
    "description": "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses.",
    "homepage": "http://euhcvdb.ibcp.fr/euHCVdb/",
    "id": "00000207",
    "name": "HCVDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^M\\d{5}$",
    "prefix": "hcvdb",
    "sampleId": "M58335",
    "uri_format": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1"
  },
  "hdr": {
    "deprecated": false,
    "description": "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders.",
    "homepage": "http://research.nhgri.nih.gov/apps/homeodomain/web/",
    "id": "00000497",
    "name": "Homeodomain Research",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "hdr",
    "sampleId": "63",
    "uri_format": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=$1"
  },
  "hgmd": {
    "deprecated": false,
    "description": "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases.",
    "homepage": "http://www.hgmd.cf.ac.uk/ac/index.php",
    "id": "00000392",
    "name": "HGMD",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z_0-9]+$",
    "prefix": "hgmd",
    "sampleId": "CALM1",
    "uri_format": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1"
  },
  "hgnc": {
    "deprecated": false,
    "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene.  All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.",
    "homepage": "https://www.genenames.org",
    "id": "00000080",
    "name": "HGNC",
    "namespaceEmbeddedInLui": false,
    "pattern": "^((HGNC|hgnc):)?\\d{1,5}$",
    "prefix": "hgnc",
    "sampleId": "2674",
    "uri_format": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1"
  },
  "hgnc.family": {
    "deprecated": true,
    "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides symbols for both structural and functional gene families. This collection refers to records using the HGNC family symbol.",
    "id": "00000520",
    "name": "HGNC Family",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z0-9-]+(#[A-Z0-9-]+)?$",
    "prefix": "hgnc.family",
    "sampleId": "PADI"
  },
  "hgnc.genefamily": {
    "deprecated": false,
    "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.",
    "homepage": "https://www.genenames.org/",
    "id": "00000573",
    "name": "HGNC gene family",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "hgnc.genefamily",
    "sampleId": "141",
    "uri_format": "https://www.genenames.org/cgi-bin/genefamilies/set/$1"
  },
  "hgnc.genegroup": {
    "deprecated": false,
    "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.",
    "homepage": "https://www.genenames.org",
    "id": "00000709",
    "name": "HGNC Gene Group",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "hgnc.genegroup",
    "sampleId": "141",
    "uri_format": "https://www.genenames.org/cgi-bin/genefamilies/set/$1"
  },
  "hgnc.symbol": {
    "deprecated": false,
    "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.",
    "homepage": "https://www.genenames.org/",
    "id": "00000362",
    "name": "HGNC Symbol",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Za-z-0-9_]+(\\@)?$",
    "prefix": "hgnc.symbol",
    "sampleId": "DAPK1",
    "uri_format": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1"
  },
  "hinv.locus": {
    "deprecated": false,
    "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view.",
    "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
    "id": "00000167",
    "name": "H-InvDb Locus",
    "namespaceEmbeddedInLui": false,
    "pattern": "^HIX\\d{7}(\\.\\d+)?$",
    "prefix": "hinv.locus",
    "sampleId": "HIX0004394",
    "uri_format": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1"
  },
  "hinv.protein": {
    "deprecated": false,
    "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view.",
    "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
    "id": "00000169",
    "name": "H-InvDb Protein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^HIP\\d{9}(\\.\\d+)?$",
    "prefix": "hinv.protein",
    "sampleId": "HIP000030660",
    "uri_format": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1"
  },
  "hinv.transcript": {
    "deprecated": false,
    "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view.",
    "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
    "id": "00000168",
    "name": "H-InvDb Transcript",
    "namespaceEmbeddedInLui": false,
    "pattern": "^HIT\\d{9}(\\.\\d+)?$",
    "prefix": "hinv.transcript",
    "sampleId": "HIT000195363",
    "uri_format": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1"
  },
  "hmdb": {
    "deprecated": false,
    "description": "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.",
    "homepage": "http://www.hmdb.ca/",
    "id": "00000051",
    "name": "HMDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^HMDB\\d+$",
    "prefix": "hmdb",
    "sampleId": "HMDB00001",
    "uri_format": "http://www.hmdb.ca/metabolites/$1"
  },
  "hogenom": {
    "deprecated": false,
    "description": "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.",
    "homepage": "http://pbil.univ-lyon1.fr/databases/hogenom/",
    "id": "00000213",
    "name": "HOGENOM",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "hogenom",
    "sampleId": "HBG284870",
    "uri_format": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1"
  },
  "homd.seq": {
    "deprecated": false,
    "description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.",
    "homepage": "http://www.homd.org/index.php",
    "id": "00000170",
    "name": "HOMD Sequence Metainformation",
    "namespaceEmbeddedInLui": false,
    "pattern": "^SEQF\\d+$",
    "prefix": "homd.seq",
    "sampleId": "SEQF1003",
    "uri_format": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1"
  },
  "homd.taxon": {
    "deprecated": false,
    "description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.",
    "homepage": "http://www.homd.org/index.php",
    "id": "00000171",
    "name": "HOMD Taxonomy",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "homd.taxon",
    "sampleId": "811",
    "uri_format": "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$1&view=dynamic"
  },
  "homologene": {
    "deprecated": false,
    "description": "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.",
    "homepage": "https://www.ncbi.nlm.nih.gov/homologene/",
    "id": "00000275",
    "name": "HomoloGene",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "homologene",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "Bio2RDF",
        "homepage": "http://homologene.bio2rdf.org/fct",
        "name": "Bio2RDF",
        "uri_format": "http://homologene.bio2rdf.org/describe/?url=http://bio2rdf.org/homologene:$1"
      }
    ],
    "sampleId": "1000",
    "uri_format": "https://www.ncbi.nlm.nih.gov/homologene/$1"
  },
  "hovergen": {
    "deprecated": false,
    "description": "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.",
    "homepage": "http://pbil.univ-lyon1.fr/databases/hovergen.php",
    "id": "00000074",
    "name": "HOVERGEN",
    "namespaceEmbeddedInLui": false,
    "pattern": "^HBG\\d+$",
    "prefix": "hovergen",
    "sampleId": "HBG004341",
    "uri_format": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN"
  },
  "hp": {
    "deprecated": false,
    "description": "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.",
    "homepage": "http://human-phenotype-ontology.github.io/",
    "id": "00000571",
    "name": "Human Phenotype Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^HP:\\d{7}$",
    "prefix": "hp",
    "sampleId": "0000118",
    "uri_format": "https://hpo.jax.org/app/browse/term/HP:$1"
  },
  "hpa": {
    "deprecated": false,
    "description": "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.",
    "homepage": "http://www.proteinatlas.org/",
    "id": "00000336",
    "name": "HPA",
    "namespaceEmbeddedInLui": false,
    "pattern": "^ENSG\\d{11}$",
    "prefix": "hpa",
    "sampleId": "ENSG00000026508",
    "uri_format": "http://www.proteinatlas.org/$1"
  },
  "hpm.peptide": {
    "deprecated": false,
    "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.",
    "homepage": "http://www.humanproteomemap.org/index.php",
    "id": "00000527",
    "name": "Human Proteome Map Peptide",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "hpm.peptide",
    "sampleId": "9606117",
    "uri_format": "http://www.humanproteomemap.org/spectrum.php?pep_id=$1"
  },
  "hpm.protein": {
    "deprecated": false,
    "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.",
    "homepage": "http://www.humanproteomemap.org/index.php",
    "id": "00000526",
    "name": "Human Proteome Map Protein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "hpm.protein",
    "sampleId": "1968",
    "uri_format": "http://www.humanproteomemap.org/protein.php?hpm_id=$1"
  },
  "hprd": {
    "deprecated": false,
    "description": "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.",
    "homepage": "http://www.hprd.org/",
    "id": "00000377",
    "name": "HPRD",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "hprd",
    "sampleId": "00001",
    "uri_format": "http://www.hprd.org/protein/$1"
  },
  "hpscreg": {
    "deprecated": false,
    "description": "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).",
    "homepage": "https://hpscreg.eu/",
    "id": "00000674",
    "name": "Human Pluripotent Stem Cell Registry",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$",
    "prefix": "hpscreg",
    "sampleId": "BCRTi001-A",
    "uri_format": "https://hpscreg.eu/cell-line/$1"
  },
  "hssp": {
    "deprecated": false,
    "description": "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.",
    "homepage": "http://swift.cmbi.kun.nl/swift/hssp/",
    "id": "00000215",
    "name": "HSSP",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w{4}$",
    "prefix": "hssp",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "HSSP at CMBI",
        "homepage": "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/",
        "name": "HSSP at CMBI",
        "uri_format": "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/$1.hssp.bz2"
      }
    ],
    "sampleId": "102l",
    "uri_format": "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2"
  },
  "huge": {
    "deprecated": false,
    "description": "The Human Unidentified Gene-Encoded (HUGE) protein database contains  results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.",
    "homepage": "http://www.kazusa.or.jp/huge/",
    "id": "00000263",
    "name": "HUGE",
    "namespaceEmbeddedInLui": false,
    "pattern": "^KIAA\\d{4}$",
    "prefix": "huge",
    "sampleId": "KIAA0001",
    "uri_format": "http://www.kazusa.or.jp/huge/gfpage/$1/"
  },
  "iao": {
    "deprecated": false,
    "description": "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.",
    "homepage": "http://www.ontobee.org/ontology/IAO",
    "id": "00000603",
    "name": "Information Artifact Ontology",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d{7}$",
    "prefix": "iao",
    "sampleId": "0000030",
    "uri_format": "http://purl.obolibrary.org/obo/IAO_$1"
  },
  "icd": {
    "deprecated": false,
    "description": "The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes.",
    "homepage": "http://www.who.int/classifications/icd/en/",
    "id": "00000009",
    "name": "ICD",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z]\\d+(\\.[-\\d+])?$",
    "prefix": "icd",
    "sampleId": "C34",
    "uri_format": "http://apps.who.int/classifications/icd10/browse/2010/en#/$1"
  },
  "icdc": {
    "deprecated": false,
    "description": "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.",
    "homepage": "https://caninecommons.cancer.gov/#/",
    "id": "00000812",
    "name": "Integrated Canine Data Commons",
    "namespaceEmbeddedInLui": false,
    "pattern": "^ICDC[0-9][0-9][0-9][0-9][0-9][0-9]$",
    "prefix": "icdc",
    "sampleId": "ICDC000101",
    "uri_format": "https://caninecommons.cancer.gov/#/study/$1"
  },
  "iceberg.element": {
    "deprecated": false,
    "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.",
    "homepage": "http://db-mml.sjtu.edu.cn/ICEberg/",
    "id": "00000469",
    "name": "ICEberg element",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "iceberg.element",
    "sampleId": "100",
    "uri_format": "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$1"
  },
  "iceberg.family": {
    "deprecated": false,
    "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.",
    "homepage": "http://db-mml.sjtu.edu.cn/ICEberg/",
    "id": "00000470",
    "name": "ICEberg family",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "iceberg.family",
    "sampleId": "1",
    "uri_format": "http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$1"
  },
  "ideal": {
    "deprecated": false,
    "description": "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.",
    "homepage": "http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/",
    "id": "00000398",
    "name": "IDEAL",
    "namespaceEmbeddedInLui": false,
    "pattern": "^IID\\d+$",
    "prefix": "ideal",
    "sampleId": "IID00001",
    "uri_format": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1"
  },
  "identifiers.namespace": {
    "deprecated": false,
    "description": "Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain.",
    "homepage": "https://www.ebi.ac.uk",
    "id": "00000859",
    "name": "Identifiers.org namespace",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[a-z_\\.]+$",
    "prefix": "identifiers.namespace",
    "sampleId": "pubmed",
    "uri_format": "https://registry.identifiers.org/registry/$1"
  },
  "ido": {
    "deprecated": false,
    "description": "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/ido",
    "id": "00000677",
    "name": "Infectious Disease Ontology",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]+$",
    "prefix": "ido",
    "sampleId": "0000504",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:$1"
  },
  "idoo": {
    "deprecated": false,
    "description": "Identifiers.org Ontology",
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    "sampleId": "SRS086444",
    "uri_format": "https://www.ebi.ac.uk/metagenomics/samples/$1"
  },
  "mi": {
    "deprecated": false,
    "description": "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/mi",
    "id": "00000109",
    "name": "Molecular Interactions Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^MI:\\d{4}$",
    "prefix": "mi",
    "sampleId": "0308",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:$1"
  },
  "microscope": {
    "deprecated": false,
    "description": "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.",
    "homepage": "http://www.genoscope.cns.fr/agc/microscope",
    "id": "00000631",
    "name": "MicroScope",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "microscope",
    "sampleId": "5601141",
    "uri_format": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"
  },
  "microsporidia": {
    "deprecated": false,
    "description": "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
    "homepage": "http://microsporidiadb.org/micro/",
    "id": "00000152",
    "name": "MicrosporidiaDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "microsporidia",
    "sampleId": "ECU03_0820i",
    "uri_format": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
  },
  "mim": {
    "deprecated": false,
    "description": "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.",
    "homepage": "https://omim.org/",
    "id": "00000016",
    "name": "OMIM",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[*#+%^]?\\d{6}$",
    "prefix": "mim",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "OMIM mirror at John Hopkins",
        "homepage": "http://mirror.omim.org/",
        "name": "OMIM mirror at John Hopkins",
        "uri_format": "http://mirror.omim.org/entry/$1"
      }
    ],
    "sampleId": "603903",
    "uri_format": "https://omim.org/entry/$1"
  },
  "mimodb": {
    "deprecated": false,
    "description": "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.",
    "homepage": "http://immunet.cn/bdb/",
    "id": "00000251",
    "name": "MimoDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "mimodb",
    "sampleId": "1",
    "uri_format": "http://immunet.cn/bdb/index.php/mimoset/$1"
  },
  "minid": {
    "deprecated": false,
    "description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.",
    "homepage": "https://fair-research.org",
    "id": "00000645",
    "name": "Minimal Viable Identifier",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Za-z0-9]+$",
    "prefix": "minid",
    "sampleId": "b97957",
    "uri_format": "https://hdl.handle.net/hdl:20.500.12582/$1"
  },
  "minid.test": {
    "deprecated": false,
    "description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. ",
    "homepage": "https://fair-research.org",
    "id": "00000707",
    "name": "MINID Test",
    "namespaceEmbeddedInLui": false,
    "pattern": "[A-Za-z0-9]+$",
    "prefix": "minid.test",
    "sampleId": "3SBPLMKKVEVR",
    "uri_format": "https://hdl.handle.net/hdl:20.500.12633/$1"
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  "mint": {
    "deprecated": false,
    "description": "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.",
    "homepage": "http://mint.bio.uniroma2.it/mint/",
    "id": "00000042",
    "name": "MINT",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MINT\\-\\d{1,7}$",
    "prefix": "mint",
    "providers": [
      {
        "code": "ebi",
        "description": "MINT subset through IntAct",
        "homepage": "https://www.ebi.ac.uk/intact/",
        "name": "MINT subset through IntAct",
        "uri_format": "https://www.ebi.ac.uk/intact/query/interaction_id:$1"
      }
    ],
    "sampleId": "MINT-10000",
    "uri_format": "http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$1"
  },
  "mipmod": {
    "deprecated": false,
    "description": "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.",
    "homepage": "http://bioinfo.iitk.ac.in/MIPModDB",
    "id": "00000256",
    "name": "MIPModDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "mipmod",
    "sampleId": "HOSAPI0399",
    "uri_format": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1"
  },
  "mir": {
    "deprecated": false,
    "description": "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form \u201cPREFIX:ACCESSION\u201d or \"PROVIDER/PREFIX:ACCESSION\u201d commonly used to specify bioinformatics and other data resources.",
    "homepage": "https://registry.identifiers.org/registry",
    "id": "00000599",
    "name": "Identifiers.org Registry",
    "namespaceEmbeddedInLui": true,
    "pattern": "^MIR:\\d{8}$",
    "prefix": "mir",
    "sampleId": "00100037",
    "uri_format": "https://registry.identifiers.org/registry?query=\"MIR:$1\""
  },
  "mirbase": {
    "deprecated": false,
    "description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).",
    "homepage": "http://www.mirbase.org/",
    "id": "00000078",
    "name": "miRBase Sequence",
    "namespaceEmbeddedInLui": false,
    "pattern": "MI\\d{7}",
    "prefix": "mirbase",
    "sampleId": "MI0000001",
    "uri_format": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"
  },
  "mirbase.mature": {
    "deprecated": false,
    "description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.",
    "homepage": "http://www.mirbase.org/",
    "id": "00000235",
    "name": "miRBase mature sequence",
    "namespaceEmbeddedInLui": false,
    "pattern": "MIMAT\\d{7}",
    "prefix": "mirbase.mature",
    "sampleId": "MIMAT0000001",
    "uri_format": "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1"
  },
  "mirex": {
    "deprecated": false,
    "description": "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT\u2013qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.",
    "homepage": "http://comgen.pl/mirex/?page=home",
    "id": "00000329",
    "name": "mirEX",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+(\\w+)?$",
    "prefix": "mirex",
    "sampleId": "165a",
    "uri_format": "http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes"
  },
  "miriam.collection": {
    "deprecated": true,
    "description": "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.",
    "id": "00000008",
    "name": "MIRIAM Registry collection",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MIR:000\\d{5}$",
    "prefix": "miriam.collection",
    "sampleId": "MIR:00000008"
  },
  "miriam.resource": {
    "deprecated": false,
    "description": "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.",
    "homepage": "https://www.ebi.ac.uk/miriam/",
    "id": "00000188",
    "name": "MIRIAM Registry resource",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MIR:001\\d{5}$",
    "prefix": "miriam.resource",
    "sampleId": "MIR:00100005",
    "uri_format": "https://www.ebi.ac.uk/miriam/main/resources/$1"
  },
  "mirnest": {
    "deprecated": false,
    "description": "miRNEST is a database of animal, plant and virus microRNAs, containing  miRNA predictions conducted on Expressed Sequence Tags of animal and  plant species.",
    "homepage": "http://rhesus.amu.edu.pl/mirnest/copy/",
    "id": "00000246",
    "name": "miRNEST",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MNEST\\d+$",
    "prefix": "mirnest",
    "sampleId": "MNEST029358",
    "uri_format": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1"
  },
  "mirtarbase": {
    "deprecated": false,
    "description": "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.",
    "homepage": "http://mirtarbase.mbc.nctu.edu.tw/",
    "id": "00000562",
    "name": "miRTarBase",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MIRT\\d{6}$",
    "prefix": "mirtarbase",
    "sampleId": "MIRT000002",
    "uri_format": "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=$1"
  },
  "mlc": {
    "deprecated": false,
    "description": "MLCommons Association artifacts, including benchmark results, datasets, and saved models.",
    "homepage": "https://mlcommons.org/en/",
    "id": "00000828",
    "name": "MLCommons Association",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9a-zA-Z\\.\\-\\_]+$",
    "prefix": "mlc",
    "sampleId": "0.7-123",
    "uri_format": "https://www.mlcommons.org/mlc-id/$1"
  },
  "mmdb": {
    "deprecated": false,
    "description": "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.",
    "homepage": "http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure",
    "id": "00000121",
    "name": "Molecular Modeling Database",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d{1,5}$",
    "prefix": "mmdb",
    "sampleId": "50885",
    "uri_format": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"
  },
  "mmmp:biomaps": {
    "deprecated": false,
    "description": "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.",
    "homepage": "http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp",
    "id": "00000075",
    "name": "Melanoma Molecular Map Project Biomaps",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "mmmp:biomaps",
    "sampleId": "37",
    "uri_format": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1"
  },
  "mmp.cat": {
    "deprecated": false,
    "description": "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.",
    "homepage": "https://mmp.sfb.uit.no/databases/marcat/",
    "id": "00000615",
    "name": "MarCat",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MMP\\d+.\\d+$",
    "prefix": "mmp.cat",
    "sampleId": "MMP743597.11",
    "uri_format": "https://mmp.sfb.uit.no/databases/marcat/#/records/$1"
  },
  "mmp.db": {
    "deprecated": false,
    "description": "MarDB includes all sequenced marine microbial genomes regardless of level of completeness.",
    "homepage": "https://mmp.sfb.uit.no/databases/mardb/",
    "id": "00000614",
    "name": "MarDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MMP\\d+.\\d+$",
    "prefix": "mmp.db",
    "sampleId": "MMP02954345.1",
    "uri_format": "https://mmp.sfb.uit.no/databases/mardb/#/records/$1"
  },
  "mmp.fun": {
    "deprecated": false,
    "description": "MarFun is manually curated database for marine fungi which is a part of the MAR databases.",
    "homepage": "https://mmp.sfb.uit.no/databases/marfun",
    "id": "00000729",
    "name": "MarFun",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MMP\\d+.\\d+$",
    "prefix": "mmp.fun",
    "sampleId": "MMP3888430",
    "uri_format": "https://mmp.sfb.uit.no/databases/marfun/#/records/$1"
  },
  "mmp.ref": {
    "deprecated": false,
    "description": "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.",
    "homepage": "https://mmp.sfb.uit.no/databases/marref/",
    "id": "00000613",
    "name": "MarRef",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MMP\\d+.\\d+$",
    "prefix": "mmp.ref",
    "sampleId": "MMP3312982.2",
    "uri_format": "https://mmp.sfb.uit.no/databases/marref/#/records/$1"
  },
  "mmrrc": {
    "deprecated": false,
    "description": "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.",
    "homepage": "http://www.mmrrc.org/",
    "id": "00000324",
    "name": "MMRRC",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "mmrrc",
    "sampleId": "70",
    "uri_format": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1"
  },
  "mo": {
    "deprecated": false,
    "description": "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.",
    "homepage": "http://bioportal.bioontology.org/",
    "id": "00000303",
    "name": "MGED Ontology",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "mo",
    "providers": [
      {
        "code": "ebi",
        "description": "MGED Ontology at SourceForge",
        "homepage": "https://mged.sourceforge.net/ontologies/MGEDontology.php",
        "name": "MGED Ontology at SourceForge",
        "uri_format": "https://mged.sourceforge.net/ontologies/MGEDontology.php#$1"
      }
    ],
    "sampleId": "ArrayGroup",
    "uri_format": "http://purl.bioontology.org/ontology/MO/$1"
  },
  "mobidb": {
    "deprecated": false,
    "description": "MobiDB is a database of protein disorder and mobility annotations.",
    "homepage": "https://mobidb.org/",
    "id": "00000637",
    "name": "MobiDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$",
    "prefix": "mobidb",
    "sampleId": "P10636",
    "uri_format": "https://mobidb.org/$1"
  },
  "mod": {
    "deprecated": false,
    "description": "The Proteomics Standards Initiative modification ontology (PSI-MOD)  aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/mod",
    "id": "00000056",
    "name": "Protein Modification Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^MOD:\\d{5}",
    "prefix": "mod",
    "sampleId": "00001",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/mod/terms?obo_id=MOD:$1"
  },
  "modeldb": {
    "deprecated": false,
    "description": "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.",
    "homepage": "http://senselab.med.yale.edu/ModelDB/",
    "id": "00000131",
    "name": "ModelDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "modeldb",
    "sampleId": "45539",
    "uri_format": "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$1"
  },
  "molbase": {
    "deprecated": false,
    "description": "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.",
    "homepage": "http://www.molbase.com/",
    "id": "00000458",
    "name": "Molbase",
    "namespaceEmbeddedInLui": false,
    "pattern": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$",
    "prefix": "molbase",
    "sampleId": "128796-39-4",
    "uri_format": "http://www.molbase.com/en/index.php?app=search&search_keyword=$1"
  },
  "molmedb": {
    "deprecated": false,
    "description": "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. ",
    "homepage": "http://www.upol.cz/en/",
    "id": "00000768",
    "name": "MolMeDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[m,M]{2}[0-9]{5}[0-9]*$",
    "prefix": "molmedb",
    "sampleId": "MM00040",
    "uri_format": "https://molmedb.upol.cz/mol/$1"
  },
  "morpheus": {
    "deprecated": false,
    "description": "The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.\n",
    "homepage": "https://morpheus.gitlab.io/",
    "id": "00000725",
    "name": "Morpheus model repository",
    "namespaceEmbeddedInLui": false,
    "pattern": "^M[0-9]{4,}$",
    "prefix": "morpheus",
    "sampleId": "M0001",
    "uri_format": "https://morpheus.gitlab.io/models/$1"
  },
  "mp": {
    "deprecated": false,
    "description": "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.",
    "homepage": "http://www.informatics.jax.org/",
    "id": "00000580",
    "name": "Mammalian Phenotype Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^MP:\\d{7}$",
    "prefix": "mp",
    "sampleId": "0005452",
    "uri_format": "http://www.informatics.jax.org/searches/Phat.cgi?id=MP:$1"
  },
  "mpid": {
    "deprecated": false,
    "description": "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.",
    "homepage": "http://www.jcvi.org/mpidb/about.php",
    "id": "00000124",
    "name": "Microbial Protein Interaction Database",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "mpid",
    "providers": [
      {
        "code": "ebi",
        "description": "Microbial Protein Interaction Database subset through IntAct",
        "homepage": "https://www.ebi.ac.uk/intact/",
        "name": "Microbial Protein Interaction Database subset through IntAct",
        "uri_format": "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-$1"
      }
    ],
    "sampleId": "172",
    "uri_format": "http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1"
  },
  "ms": {
    "deprecated": false,
    "description": "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/ms",
    "id": "00000590",
    "name": "Mass Spectrometry Controlled Vocabulary",
    "namespaceEmbeddedInLui": true,
    "pattern": "^MS:\\d{7}$",
    "prefix": "ms",
    "sampleId": "1000001",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/ms/terms?obo_id=MS:$1"
  },
  "multicellds.cell_line": {
    "deprecated": false,
    "description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.",
    "homepage": "http://multicellds.org/MultiCellDB.php",
    "id": "00000584",
    "name": "MultiCellDS Digital Cell Line",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MCDS_L_[a-zA-Z0-9]{1,10}$",
    "prefix": "multicellds.cell_line",
    "sampleId": "MCDS_L_0000000001",
    "uri_format": "http://multicellds.org/MultiCellDB/$1"
  },
  "multicellds.collection": {
    "deprecated": false,
    "description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).",
    "homepage": "http://multicellds.org/MultiCellDB.php",
    "id": "00000582",
    "name": "MultiCellDS collection",
    "namespaceEmbeddedInLui": false,
    "pattern": "^MCDS_C_[a-zA-Z0-9]{1,10}$",
    "prefix": "multicellds.collection",
    "sampleId": "MCDS_C_0000000001",
    "uri_format": "http://multicellds.org/MultiCellDB/$1"
  },
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    "uri_format": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1"
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    "description": "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.",
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    "sampleId": "NOR00681",
    "uri_format": "http://bioinfo.lifl.fr/norine/result.jsp?ID=$1"
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    "homepage": "http://www.receptors.org/nucleardb/",
    "id": "00000356",
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    "uri_format": "http://www.receptors.org/nucleardb/proteins/$1"
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    "deprecated": false,
    "description": "The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.",
    "homepage": "https://www.ncbi.nlm.nih.gov/",
    "id": "00000882",
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    "id": "00000738",
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    "uri_format": "https://ocid.ontochem.com/prefname?ocid=$1"
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    "deprecated": false,
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    "homepage": "https://www.oclc.org/en/about.html",
    "id": "00000669",
    "name": "Online Computer Library Center (OCLC) WorldCat",
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    "pattern": "^[0-9]+$",
    "prefix": "oclc",
    "sampleId": "634515043",
    "uri_format": "https://www.worldcat.org/oclc/$1"
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    "deprecated": false,
    "description": "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed.",
    "homepage": "https://metabolome.cgfb.u-bordeaux.fr/",
    "id": "00000722",
    "name": "Open Data for Access and Mining",
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    "prefix": "odam",
    "sampleId": "frim1",
    "uri_format": "http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1"
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    "deprecated": false,
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    "name": "Open Data Commons for Spinal Cord Injury",
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    "pattern": "^[0-9]*$",
    "prefix": "odc.sci",
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    "uri_format": "https://odc-sci.org/data/$1"
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    "homepage": "https://odc-tbi.org",
    "id": "00000816",
    "name": "Open Data Commons for Traumatic Brain Injury",
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    "pattern": "^[0-9]*$",
    "prefix": "odc.tbi",
    "sampleId": "408",
    "uri_format": "https://odc-tbi.org/data/$1"
  },
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    "deprecated": false,
    "description": "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors",
    "homepage": "http://senselab.med.yale.edu/OdorDB",
    "id": "00000500",
    "name": "Odor Molecules DataBase",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "odor",
    "sampleId": "74",
    "uri_format": "http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5"
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    "deprecated": false,
    "description": "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.",
    "homepage": "http://www.oid-info.com/introduction.htm",
    "id": "00000673",
    "name": "OID Repository",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[\\d.]+$",
    "prefix": "oid",
    "sampleId": "2.16.840",
    "uri_format": "http://www.oid-info.com/cgi-bin/display?oid=$1&submit=Display&action=display"
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    "deprecated": false,
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    "homepage": "https://omabrowser.org/cgi-bin/gateway.pl",
    "id": "00000343",
    "name": "OMA Group",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z]+$",
    "prefix": "oma.grp",
    "sampleId": "LCSCCPN",
    "uri_format": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1"
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    "deprecated": false,
    "description": "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. ",
    "homepage": "https://omabrowser.org",
    "id": "00000785",
    "name": "OMA HOGs",
    "namespaceEmbeddedInLui": true,
    "pattern": "^HOG:[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$",
    "prefix": "oma.hog",
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    "uri_format": "https://omabrowser.org/oma/hog/resolve/HOG:$1/"
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  "oma.protein": {
    "deprecated": false,
    "description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.",
    "homepage": "https://omabrowser.org/cgi-bin/gateway.pl",
    "id": "00000342",
    "name": "OMA Protein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z0-9]{5}\\d+$",
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    "sampleId": "HUMAN16963",
    "uri_format": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1"
  },
  "omia": {
    "deprecated": false,
    "description": "Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse).",
    "homepage": "http://omia.angis.org.au/",
    "id": "00000142",
    "name": "OMIA",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "omia",
    "sampleId": "1000",
    "uri_format": "http://omia.angis.org.au/$1/"
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  "omit": {
    "deprecated": false,
    "description": "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/omit/",
    "id": "00000605",
    "name": "OMIT",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d{7}$",
    "prefix": "omit",
    "sampleId": "0005506",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_$1"
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    "deprecated": false,
    "description": "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.",
    "homepage": "http://bioportal.bioontology.org/ontologies/OPB",
    "id": "00000129",
    "name": "Ontology of Physics for Biology",
    "namespaceEmbeddedInLui": false,
    "pattern": "^OPB_\\d+$",
    "prefix": "opb",
    "sampleId": "OPB_00573",
    "uri_format": "http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23$1"
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    "deprecated": false,
    "description": "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.",
    "homepage": "http://opm.phar.umich.edu/",
    "id": "00000333",
    "name": "OPM",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9][A-Za-z0-9]{3}$",
    "prefix": "opm",
    "sampleId": "1h68",
    "uri_format": "http://opm.phar.umich.edu/protein.php?pdbid=$1"
  },
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    "deprecated": false,
    "description": "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.",
    "homepage": "https://orcid.org",
    "id": "00000382",
    "name": "ORCID",
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    "pattern": "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$",
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    "sampleId": "0000-0002-5355-2576",
    "uri_format": "https://orcid.org/$1"
  },
  "ordb": {
    "deprecated": false,
    "description": "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs).",
    "homepage": "http://senselab.med.yale.edu/OrDB/",
    "id": "00000499",
    "name": "Olfactory Receptor Database",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "ordb",
    "sampleId": "8497",
    "uri_format": "http://senselab.med.yale.edu/ORDB/Data/$1"
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  "oridb.sacch": {
    "deprecated": false,
    "description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae.",
    "homepage": "http://cerevisiae.oridb.org/index.php",
    "id": "00000369",
    "name": "OriDB Saccharomyces",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "oridb.sacch",
    "sampleId": "1",
    "uri_format": "http://cerevisiae.oridb.org/details.php?id=$1"
  },
  "oridb.schizo": {
    "deprecated": false,
    "description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe.",
    "homepage": "http://pombe.oridb.org/index.php",
    "id": "00000368",
    "name": "OriDB Schizosaccharomyces",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "oridb.schizo",
    "sampleId": "1",
    "uri_format": "http://pombe.oridb.org/details.php?id=$1"
  },
  "orphanet": {
    "deprecated": false,
    "description": "Orphanet is a reference portal for information on rare diseases and orphan drugs. It\u2019s aim is to help improve the diagnosis, care and treatment of patients with rare diseases.",
    "homepage": "http://www.orpha.net/consor/",
    "id": "00000220",
    "name": "Orphanet",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "orphanet",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "Bio2RDF",
        "homepage": "http://orphanet.bio2rdf.org/fct",
        "name": "Bio2RDF",
        "uri_format": "http://orphanet.bio2rdf.org/describe/?url=http://bio2rdf.org/orphanet:$1"
      }
    ],
    "sampleId": "85163",
    "uri_format": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1"
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  "orphanet.ordo": {
    "deprecated": false,
    "description": "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/ordo",
    "id": "00000532",
    "name": "Orphanet Rare Disease Ontology",
    "namespaceEmbeddedInLui": false,
    "pattern": "^Orphanet(_|:)C?\\d+$",
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    "sampleId": "Orphanet_C023",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=$1"
  },
  "orthodb": {
    "deprecated": false,
    "description": "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups",
    "homepage": "http://cegg.unige.ch/orthodb4",
    "id": "00000221",
    "name": "OrthoDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "orthodb",
    "sampleId": "Q9P0K8",
    "uri_format": "http://cegg.unige.ch/orthodb/results?searchtext=$1"
  },
  "oryzabase.gene": {
    "deprecated": false,
    "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.",
    "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
    "id": "00000482",
    "name": "Oryzabase Gene",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "oryzabase.gene",
    "sampleId": "117",
    "uri_format": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1"
  },
  "oryzabase.mutant": {
    "deprecated": false,
    "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.",
    "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
    "id": "00000483",
    "name": "Oryzabase Mutant",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "oryzabase.mutant",
    "sampleId": "21393",
    "uri_format": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1"
  },
  "oryzabase.reference": {
    "deprecated": false,
    "description": "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan.",
    "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
    "id": "00000689",
    "name": "Oryzabase",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "oryzabase.reference",
    "sampleId": "42840",
    "uri_format": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1"
  },
  "oryzabase.stage": {
    "deprecated": false,
    "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information.",
    "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
    "id": "00000485",
    "name": "Oryzabase Stage",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "oryzabase.stage",
    "sampleId": "34",
    "uri_format": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1"
  },
  "oryzabase.strain": {
    "deprecated": false,
    "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information.",
    "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
    "id": "00000484",
    "name": "Oryzabase Strain",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "oryzabase.strain",
    "sampleId": "1",
    "uri_format": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1"
  },
  "otl": {
    "deprecated": false,
    "description": "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information.",
    "homepage": "http://oryzatagline.cirad.fr/",
    "id": "00000486",
    "name": "Oryza Tag Line",
    "namespaceEmbeddedInLui": false,
    "pattern": "^A[A-Z]+\\d+$",
    "prefix": "otl",
    "sampleId": "AADB12",
    "uri_format": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1"
  },
  "p3db.protein": {
    "deprecated": false,
    "description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites.",
    "homepage": "http://www.p3db.org/",
    "id": "00000501",
    "name": "P3DB Protein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "p3db.protein",
    "sampleId": "70",
    "uri_format": "http://www.p3db.org/protein.php?id=$1&amp;ref=0"
  },
  "p3db.site": {
    "deprecated": false,
    "description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins.",
    "homepage": "http://www.p3db.org/",
    "id": "00000502",
    "name": "P3DB Site",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "p3db.site",
    "sampleId": "65",
    "uri_format": "http://www.p3db.org/phosphosite.php?id=$1&ref=0"
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  "paleodb": {
    "deprecated": false,
    "description": "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data.",
    "homepage": "http://paleodb.org/",
    "id": "00000197",
    "name": "PaleoDB",
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    "pattern": "^\\d+$",
    "prefix": "paleodb",
    "sampleId": "83088",
    "uri_format": "http://fossilworks.org/?a=taxonInfo&taxon_no=$1"
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  "panther.family": {
    "deprecated": false,
    "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families.",
    "homepage": "http://www.pantherdb.org/",
    "id": "00000060",
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    "pattern": "^PTHR\\d{5}(\\:SF\\d{1,3})?$",
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    "deprecated": false,
    "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent \u2018all\u2019 of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes.",
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    "id": "00000374",
    "name": "PANTHER Node",
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    "deprecated": false,
    "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components.",
    "homepage": "http://www.pantherdb.org/",
    "id": "00000363",
    "name": "PANTHER Pathway",
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    "prefix": "panther.pathway",
    "sampleId": "P00024",
    "uri_format": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1"
  },
  "panther.pthcmp": {
    "deprecated": false,
    "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation.",
    "homepage": "http://www.pantherdb.org/",
    "id": "00000422",
    "name": "PANTHER Pathway Component",
    "namespaceEmbeddedInLui": false,
    "pattern": "^G|P|U|C|S\\d{5}$",
    "prefix": "panther.pthcmp",
    "sampleId": "P00266",
    "uri_format": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1"
  },
  "pass2": {
    "deprecated": false,
    "description": "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.",
    "homepage": "http://caps.ncbs.res.in/pass2/",
    "id": "00000468",
    "name": "PASS2",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "pass2",
    "sampleId": "46977",
    "uri_format": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$1"
  },
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    "deprecated": false,
    "description": "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.",
    "homepage": "http://www.pathwaycommons.org/pc/",
    "id": "00000073",
    "name": "Pathway Commons",
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    "pattern": "^\\d+$",
    "prefix": "pathwaycommons",
    "sampleId": "485991",
    "uri_format": "http://www.pathwaycommons.org/pc/record2.do?id=$1"
  },
  "pato": {
    "deprecated": false,
    "description": "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype  annotation.",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/pato",
    "id": "00000112",
    "name": "PATO",
    "namespaceEmbeddedInLui": true,
    "pattern": "^PATO:\\d{7}$",
    "prefix": "pato",
    "sampleId": "0001998",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/pato/terms?obo_id=PATO:$1"
  },
  "paxdb.organism": {
    "deprecated": false,
    "description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.",
    "homepage": "http://pax-db.org/",
    "id": "00000488",
    "name": "PaxDb Organism",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "paxdb.organism",
    "sampleId": "9606",
    "uri_format": "http://pax-db.org/#!species/$1"
  },
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    "deprecated": false,
    "description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.",
    "homepage": "http://pax-db.org/",
    "id": "00000489",
    "name": "PaxDb Protein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "paxdb.protein",
    "sampleId": "977869",
    "uri_format": "http://pax-db.org/#!protein/$1"
  },
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    "deprecated": false,
    "description": "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors.",
    "homepage": "http://www.pazar.info/",
    "id": "00000306",
    "name": "Pazar Transcription Factor",
    "namespaceEmbeddedInLui": false,
    "pattern": "^TF\\w+$",
    "prefix": "pazar",
    "sampleId": "TF0001053",
    "uri_format": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1"
  },
  "pdb": {
    "deprecated": false,
    "description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.",
    "homepage": "https://www.pdb.org/",
    "id": "00000020",
    "name": "Protein Data Bank",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9][A-Za-z0-9]{3}$",
    "prefix": "pdb",
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        "homepage": "http://www.proteopedia.org/",
        "name": "Proteopedia",
        "uri_format": "http://proteopedia.org/wiki/index.php/$1"
      },
      {
        "code": "ebi",
        "description": "Protein Databank through PDBsum",
        "homepage": "https://www.ebi.ac.uk/pdbsum/",
        "name": "Protein Databank through PDBsum",
        "uri_format": "https://www.ebi.ac.uk/pdbsum/$1"
      }
    ],
    "sampleId": "2gc4",
    "uri_format": "https://www.rcsb.org/structure/$1"
  },
  "pdb-ccd": {
    "deprecated": false,
    "description": "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.",
    "homepage": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/",
    "id": "00000113",
    "name": "Chemical Component Dictionary",
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    "pattern": "^\\w{3}$",
    "prefix": "pdb-ccd",
    "sampleId": "AB0",
    "uri_format": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"
  },
  "pdb.ligand": {
    "deprecated": false,
    "description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.",
    "homepage": "http://www.pdb.org/",
    "id": "00000490",
    "name": "Protein Data Bank Ligand",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Za-z0-9]+$",
    "prefix": "pdb.ligand",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "PDB Ligand at Protein Databank in Europe (PDBe)",
        "homepage": "https://www.pdbe.org/",
        "name": "PDB Ligand at Protein Databank in Europe (PDBe)",
        "uri_format": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"
      }
    ],
    "sampleId": "TRQ",
    "uri_format": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1"
  },
  "ped": {
    "deprecated": false,
    "description": "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.",
    "homepage": "https://proteinensemble.org/",
    "id": "00000777",
    "name": "Protein Ensemble Database",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PED\\d{5}$",
    "prefix": "ped",
    "sampleId": "PED00037",
    "uri_format": "https://proteinensemble.org/$1"
  },
  "ped.ensemble": {
    "deprecated": false,
    "description": "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.",
    "homepage": "https://proteinensemble.org/",
    "id": "00000795",
    "name": "Protein Ensemble Database ensemble",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PED\\d{5}e\\d{3}$",
    "prefix": "ped.ensemble",
    "sampleId": "PED00017e001",
    "uri_format": "https://proteinensemble.org/$1"
  },
  "peptideatlas": {
    "deprecated": false,
    "description": "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.",
    "homepage": "http://www.peptideatlas.org/",
    "id": "00000053",
    "name": "PeptideAtlas",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PAp[0-9]{8}$",
    "prefix": "peptideatlas",
    "sampleId": "PAp00000009",
    "uri_format": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1"
  },
  "peptideatlas.dataset": {
    "deprecated": false,
    "description": "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas.",
    "homepage": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary",
    "id": "00000690",
    "name": "PeptideAtlas Dataset",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PASS\\d{5}$",
    "prefix": "peptideatlas.dataset",
    "sampleId": "PASS01237",
    "uri_format": "http://www.peptideatlas.org/PASS/$1"
  },
  "peroxibase": {
    "deprecated": false,
    "description": "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.",
    "homepage": "http://peroxibase.toulouse.inra.fr/",
    "id": "00000222",
    "name": "Peroxibase",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "peroxibase",
    "sampleId": "5282",
    "uri_format": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1"
  },
  "pfam": {
    "deprecated": false,
    "description": "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.",
    "homepage": "https://pfam.xfam.org/",
    "id": "00000028",
    "name": "Pfam",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PF\\d{5}$",
    "prefix": "pfam",
    "sampleId": "PF01234",
    "uri_format": "https://pfam.xfam.org/family/$1"
  },
  "pgs": {
    "deprecated": false,
    "description": "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation.",
    "homepage": "http://pgscatalog.org",
    "id": "00000753",
    "name": "Polygenic Score Catalog",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PGS[0-9]{6}$",
    "prefix": "pgs",
    "sampleId": "PGS000018",
    "uri_format": "https://www.pgscatalog.org/pgs/$1/"
  },
  "pgx": {
    "deprecated": false,
    "description": "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.",
    "homepage": "https://progenetix.org/",
    "id": "00000600",
    "name": "Progenetix",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$",
    "prefix": "pgx",
    "sampleId": "pgxbs-kftva5zv",
    "uri_format": "https://progenetix.org/services/ids/$1"
  },
  "pharmgkb.disease": {
    "deprecated": false,
    "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
    "homepage": "http://www.pharmgkb.org/",
    "id": "00000090",
    "name": "PharmGKB Disease",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PA\\d+$",
    "prefix": "pharmgkb.disease",
    "sampleId": "PA447218",
    "uri_format": "http://www.pharmgkb.org/disease/$1"
  },
  "pharmgkb.drug": {
    "deprecated": false,
    "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
    "homepage": "http://www.pharmgkb.org/",
    "id": "00000091",
    "name": "PharmGKB Drug",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PA\\d+$",
    "prefix": "pharmgkb.drug",
    "sampleId": "PA448710",
    "uri_format": "http://www.pharmgkb.org/drug/$1"
  },
  "pharmgkb.gene": {
    "deprecated": false,
    "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
    "homepage": "http://www.pharmgkb.org/",
    "id": "00000245",
    "name": "PharmGKB Gene",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PA\\w+$",
    "prefix": "pharmgkb.gene",
    "sampleId": "PA131",
    "uri_format": "http://www.pharmgkb.org/gene/$1"
  },
  "pharmgkb.pathways": {
    "deprecated": false,
    "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r\nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.",
    "homepage": "http://www.pharmgkb.org/",
    "id": "00000089",
    "name": "PharmGKB Pathways",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PA\\d+$",
    "prefix": "pharmgkb.pathways",
    "sampleId": "PA146123006",
    "uri_format": "http://www.pharmgkb.org/pathway/$1"
  },
  "phenolexplorer": {
    "deprecated": false,
    "description": "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis.",
    "homepage": "http://www.phenol-explorer.eu/foods/",
    "id": "00000268",
    "name": "Phenol-Explorer",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "phenolexplorer",
    "sampleId": "75",
    "uri_format": "http://phenol-explorer.eu/foods/$1"
  },
  "phosphopoint.kinase": {
    "deprecated": false,
    "description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information.",
    "homepage": "http://kinase.bioinformatics.tw/",
    "id": "00000385",
    "name": "PhosphoPoint Kinase",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "phosphopoint.kinase",
    "sampleId": "AURKA",
    "uri_format": "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1"
  },
  "phosphopoint.protein": {
    "deprecated": false,
    "description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information.",
    "homepage": "http://kinase.bioinformatics.tw/",
    "id": "00000386",
    "name": "PhosphoPoint Phosphoprotein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "phosphopoint.protein",
    "sampleId": "AURKA",
    "uri_format": "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0"
  },
  "phosphosite.protein": {
    "deprecated": false,
    "description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database.",
    "homepage": "http://www.phosphosite.org/homeAction.do",
    "id": "00000105",
    "name": "PhosphoSite Protein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d{5}$",
    "prefix": "phosphosite.protein",
    "sampleId": "12300",
    "uri_format": "http://www.phosphosite.org/proteinAction.do?id=$1"
  },
  "phosphosite.residue": {
    "deprecated": false,
    "description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence.",
    "homepage": "http://www.phosphosite.org/homeAction.do",
    "id": "00000125",
    "name": "PhosphoSite Residue",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "phosphosite.residue",
    "sampleId": "2842",
    "uri_format": "http://www.phosphosite.org/siteAction.do?id=$1"
  },
  "phylomedb": {
    "deprecated": false,
    "description": "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.",
    "homepage": "http://phylomedb.org/",
    "id": "00000223",
    "name": "PhylomeDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "phylomedb",
    "sampleId": "Phy000CLXM_RAT",
    "uri_format": "http://phylomedb.org/?seqid=$1"
  },
  "phytozome.locus": {
    "deprecated": false,
    "description": "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.",
    "homepage": "http://www.phytozome.net/",
    "id": "00000432",
    "name": "Phytozome Locus",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Za-z0-9]+$",
    "prefix": "phytozome.locus",
    "sampleId": "Glyma0021s00410",
    "uri_format": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1"
  },
  "pid.pathway": {
    "deprecated": false,
    "description": "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information.",
    "homepage": "http://pid.nci.nih.gov/",
    "id": "00000133",
    "name": "NCI Pathway Interaction Database: Pathway",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "pid.pathway",
    "sampleId": "pi3kcipathway",
    "uri_format": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1"
  },
  "pigqtldb": {
    "deprecated": false,
    "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.",
    "homepage": "https://www.animalgenome.org/QTLdb",
    "id": "00000506",
    "name": "Animal Genome Pig QTL",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "pigqtldb",
    "sampleId": "14",
    "uri_format": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"
  },
  "pina": {
    "deprecated": false,
    "description": "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.",
    "homepage": "http://cbg.garvan.unsw.edu.au/pina/",
    "id": "00000359",
    "name": "PINA",
    "namespaceEmbeddedInLui": false,
    "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
    "prefix": "pina",
    "sampleId": "Q13485",
    "uri_format": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac=$1&showExtend=null"
  },
  "piroplasma": {
    "deprecated": false,
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    "homepage": "http://piroplasmadb.org/",
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    "name": "PiroplasmaDB",
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    "prefix": "piroplasma",
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    "uri_format": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
  },
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    "deprecated": false,
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    "homepage": "https://pir.georgetown.edu/",
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    "name": "PIRSF",
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    "pattern": "^PIRSF\\d{6}$",
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    "sampleId": "PIRSF000100",
    "uri_format": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1"
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    "deprecated": false,
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    "homepage": "https://www.hu-berlin.de/?set_language=en&cl=en",
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    "name": "PK-DB",
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    "prefix": "pkdb",
    "sampleId": "PKDB00198",
    "uri_format": "https://pk-db.com/data/$1"
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    "deprecated": false,
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    "homepage": "http://planttfdb.cbi.pku.edu.cn",
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    "name": "Plant Transcription Factor Database",
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    "sampleId": "Ath_AT1G01030.1",
    "uri_format": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1"
  },
  "plasmodb": {
    "deprecated": false,
    "description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
    "homepage": "http://plasmodb.org/plasmo/",
    "id": "00000150",
    "name": "PlasmoDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "plasmodb",
    "sampleId": "PF11_0344",
    "uri_format": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
  },
  "pmap.cutdb": {
    "deprecated": false,
    "description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites).",
    "homepage": "http://cutdb.burnham.org",
    "id": "00000225",
    "name": "CutDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
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    "sampleId": "25782",
    "uri_format": "http://cutdb.burnham.org/relation/show/$1"
  },
  "pmap.substratedb": {
    "deprecated": false,
    "description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.",
    "homepage": "http://substrate.burnham.org/",
    "id": "00000224",
    "name": "SubstrateDB",
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    "sampleId": "1915",
    "uri_format": "http://substrate.burnham.org/protein/annotation/$1/html"
  },
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    "deprecated": false,
    "description": "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature.",
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    "name": "PMC International",
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    "sampleId": "PMC3084216",
    "uri_format": "http://europepmc.org/articles/$1"
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    "deprecated": false,
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    "homepage": "https://bioinformatics.cineca.it/PMDB/",
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    "name": "Protein Model Database",
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    "sampleId": "PM0012345",
    "uri_format": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1"
  },
  "pmp": {
    "deprecated": false,
    "description": "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.",
    "id": "00000227",
    "name": "PMP",
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    "prefix": "pmp",
    "sampleId": "Q0VCA6"
  },
  "pmr": {
    "deprecated": false,
    "description": "Resource for the community to store, retrieve, search, reference, and reuse CellML models.",
    "homepage": "https://www.auckland.ac.nz/en.html",
    "id": "00000845",
    "name": "Physiome Model Repository",
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    "uri_format": "https://models.physiomeproject.org/exposure/$1"
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    "deprecated": false,
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    "homepage": "http://www.plantontology.org/",
    "id": "00000307",
    "name": "Plant Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^PO:\\d+$",
    "prefix": "po",
    "sampleId": "0009089",
    "uri_format": "http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:$1"
  },
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    "deprecated": false,
    "description": "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.",
    "homepage": "http://www.pocketome.org/sfSearch.cgi?act=browseall",
    "id": "00000400",
    "name": "Pocketome",
    "namespaceEmbeddedInLui": false,
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    "sampleId": "1433C_TOBAC_1_252",
    "uri_format": "http://www.pocketome.org/files/$1.html"
  },
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    "deprecated": false,
    "description": "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity.",
    "homepage": "http://polbase.neb.com/",
    "id": "00000355",
    "name": "PolBase",
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    "pattern": "^[A-Za-z-0-9]+$",
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    "sampleId": "19-T4",
    "uri_format": "https://polbase.neb.com/polymerases/$1#sequences"
  },
  "pombase": {
    "deprecated": false,
    "description": "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.",
    "homepage": "http://www.pombase.org/",
    "id": "00000335",
    "name": "PomBase",
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    "pattern": "^S\\w+(\\.)?\\w+(\\.)?$",
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    "sampleId": "SPCC13B11.01",
    "uri_format": "http://www.pombase.org/spombe/result/$1"
  },
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    "deprecated": false,
    "description": "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.",
    "homepage": "https://proconsortium.org/",
    "id": "00000141",
    "name": "Protein Ontology",
    "namespaceEmbeddedInLui": true,
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    "prefix": "pr",
    "sampleId": "000000024",
    "uri_format": "https://proconsortium.org/app/entry/PR:$1"
  },
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    "deprecated": false,
    "description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.",
    "homepage": "https://www.ebi.ac.uk/pride/",
    "id": "00000065",
    "name": "PRIDE",
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    "pattern": "^\\d+$",
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    "sampleId": "1",
    "uri_format": "https://www.ebi.ac.uk/pride/archive/assays/$1"
  },
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    "deprecated": false,
    "description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.",
    "homepage": "https://www.ebi.ac.uk/pride/",
    "id": "00000515",
    "name": "PRIDE Project",
    "namespaceEmbeddedInLui": false,
    "pattern": "^P(X|R)D\\d{6}$",
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      {
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        "homepage": "https://www.omicsdi.org/",
        "name": "PRIDE Project through OmicsDI",
        "uri_format": "https://www.omicsdi.org/dataset/pride/$1"
      }
    ],
    "sampleId": "PXD000440",
    "uri_format": "https://www.ebi.ac.uk/pride/archive/projects/$1"
  },
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    "deprecated": false,
    "description": "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours.",
    "homepage": "http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/",
    "id": "00000061",
    "name": "PRINTS",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PR\\d{5}$",
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    "sampleId": "PR00001",
    "uri_format": "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false&regexpr=off"
  },
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    "deprecated": false,
    "description": "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae.  It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities.",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/probonto",
    "id": "00000575",
    "name": "ProbOnto",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PROB_c\\d+$",
    "prefix": "probonto",
    "sampleId": "PROB_c0000005",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form=$1"
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  "prodom": {
    "deprecated": false,
    "description": "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.",
    "homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
    "id": "00000117",
    "name": "ProDom",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PD\\d+$",
    "prefix": "prodom",
    "sampleId": "PD10000",
    "uri_format": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1"
  },
  "proglyc": {
    "deprecated": false,
    "description": "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information.",
    "homepage": "http://www.proglycprot.org/",
    "id": "00000354",
    "name": "ProGlycProt",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z]C\\d{1,3}$",
    "prefix": "proglyc",
    "sampleId": "AC119",
    "uri_format": "http://www.proglycprot.org/detail.aspx?ProId=$1"
  },
  "prosite": {
    "deprecated": false,
    "description": "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.",
    "homepage": "https://www.expasy.org/prosite/",
    "id": "00000032",
    "name": "PROSITE",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PS\\d{5}$",
    "prefix": "prosite",
    "sampleId": "PS00001",
    "uri_format": "https://prosite.expasy.org/$1"
  },
  "protclustdb": {
    "deprecated": false,
    "description": "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.",
    "homepage": "https://www.ncbi.nlm.nih.gov/proteinclusters?db=proteinclusters",
    "id": "00000226",
    "name": "ProtClustDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "protclustdb",
    "sampleId": "O80725",
    "uri_format": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1"
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  "proteomicsdb.peptide": {
    "deprecated": false,
    "description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.",
    "homepage": "https://www.proteomicsdb.org/#peptideSearch",
    "id": "00000525",
    "name": "ProteomicsDB Peptide",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "proteomicsdb.peptide",
    "sampleId": "53504",
    "uri_format": "https://www.proteomicsdb.org/#human/proteinDetails/$1/peptides/"
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  "proteomicsdb.protein": {
    "deprecated": false,
    "description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information  from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins.",
    "homepage": "https://www.proteomicsdb.org/#human",
    "id": "00000524",
    "name": "ProteomicsDB Protein",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "proteomicsdb.protein",
    "sampleId": "53504",
    "uri_format": "https://www.proteomicsdb.org/#human/proteinDetails/$1/summary"
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  "protonet.cluster": {
    "deprecated": false,
    "description": "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information.",
    "homepage": "http://www.protonet.cs.huji.ac.il/",
    "id": "00000229",
    "name": "ProtoNet Cluster",
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    "pattern": "^\\d+$",
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    "uri_format": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1"
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  "protonet.proteincard": {
    "deprecated": false,
    "description": "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information.",
    "homepage": "http://www.protonet.cs.huji.ac.il/",
    "id": "00000228",
    "name": "ProtoNet ProteinCard",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
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    "uri_format": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$1"
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  "pscdb": {
    "deprecated": false,
    "description": "The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion.",
    "homepage": "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html",
    "id": "00000370",
    "name": "PSCDB",
    "namespaceEmbeddedInLui": false,
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    "uri_format": "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html"
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  "pseudomonas": {
    "deprecated": false,
    "description": "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation.",
    "homepage": "http://www.pseudomonas.com/",
    "id": "00000180",
    "name": "Pseudomonas Genome Database",
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    "pattern": "^P\\w+$",
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    "sampleId": "PSEEN0001",
    "uri_format": "http://www.pseudomonas.com/feature/show/?locus_tag=$1"
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  "psipar": {
    "deprecated": false,
    "description": "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms.",
    "homepage": "https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PAR",
    "id": "00000533",
    "name": "Protein Affinity Reagents",
    "namespaceEmbeddedInLui": false,
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    "uri_format": "https://www.ebi.ac.uk/ontology-lookup/?termId=$1"
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  "pubchem.bioassay": {
    "deprecated": false,
    "description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results.",
    "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay",
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    "uri_format": "https://pubchem.ncbi.nlm.nih.gov/bioassay/$1"
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    "deprecated": false,
    "description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records.",
    "homepage": "https://pubchem.ncbi.nlm.nih.gov/",
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        "homepage": "https://scholia.toolforge.org/",
        "name": "Scholia",
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    "sampleId": "100101",
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    "deprecated": false,
    "description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records.",
    "homepage": "https://pubchem.ncbi.nlm.nih.gov/",
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    "uri_format": "https://pubchem.ncbi.nlm.nih.gov/substance/$1"
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    "deprecated": false,
    "description": "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.",
    "homepage": "https://www.ncbi.nlm.nih.gov/PubMed/",
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    "providers": [
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        "homepage": "http://www.hubmed.org/",
        "name": "HubMed",
        "uri_format": "http://www.hubmed.org/display.cgi?uids=$1"
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        "code": "epmc",
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        "homepage": "http://europepmc.org/",
        "name": "Europe PMC",
        "uri_format": "http://europepmc.org/abstract/MED/$1"
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      {
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        "homepage": "http://linkedlifedata.com/",
        "name": "PubMed through Linkedlife data",
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        "code": "scholia",
        "description": "Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata.",
        "homepage": "https://scholia.toolforge.org/",
        "name": "Scholia",
        "uri_format": "https://scholia.toolforge.org/pubmed/$1"
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    "uri_format": "https://www.ncbi.nlm.nih.gov/pubmed/$1"
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    "deprecated": false,
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    "deprecated": false,
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    "prefix": "repeatsdb.protein",
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    "uri_format": "https://repeatsdb.org/protein/$1"
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    "deprecated": false,
    "description": "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database.",
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    "uri_format": "https://repeatsdb.org/structure/$1"
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    "deprecated": false,
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    "deprecated": false,
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    "homepage": "https://rfam.xfam.org/",
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    "uri_format": "https://rfam.xfam.org/family/$1"
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    "deprecated": false,
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    "homepage": "http://rgd.mcw.edu/",
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    "deprecated": false,
    "description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes.",
    "homepage": "http://rgd.mcw.edu/",
    "id": "00000451",
    "name": "Rat Genome Database qTL",
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    "uri_format": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1"
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    "deprecated": false,
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    "uri_format": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1"
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    "deprecated": false,
    "description": " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB.",
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    "id": "00000082",
    "name": "Rhea",
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    "deprecated": false,
    "description": "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.",
    "homepage": "http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml",
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    "name": "Rice Genome Annotation Project",
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    "deprecated": false,
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    "deprecated": false,
    "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
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    "deprecated": false,
    "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
    "description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.",
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    "prefix": "sasbdb",
    "sampleId": "SASDAX8",
    "uri_format": "http://www.sasbdb.org/data/$1"
  },
  "sbo": {
    "deprecated": false,
    "description": "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.",
    "homepage": "https://www.ebi.ac.uk/sbo/",
    "id": "00000024",
    "name": "Systems Biology Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^SBO:\\d{7}$",
    "prefix": "sbo",
    "sampleId": "0000262",
    "uri_format": "https://www.ebi.ac.uk/sbo/main/SBO:$1"
  },
  "scop": {
    "deprecated": false,
    "description": "The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes.",
    "homepage": "http://scop.mrc-lmb.cam.ac.uk/scop/",
    "id": "00000371",
    "name": "SCOP",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "scop",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "SCOP at Berkeley",
        "homepage": "http://scop.berkeley.edu/",
        "name": "SCOP at Berkeley",
        "uri_format": "http://scop.berkeley.edu/sunid=$1"
      }
    ],
    "sampleId": "47419",
    "uri_format": "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sunid=$1"
  },
  "scretf": {
    "deprecated": false,
    "description": "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.",
    "homepage": "http://stormo.wustl.edu/ScerTF/",
    "id": "00000244",
    "name": "ScerTF",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "scretf",
    "sampleId": "RSC3",
    "uri_format": "http://stormo.wustl.edu/ScerTF/details/$1/"
  },
  "sdbs": {
    "deprecated": false,
    "description": "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra.",
    "homepage": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi",
    "id": "00000319",
    "name": "Spectral Database for Organic Compounds",
    "namespaceEmbeddedInLui": false,
    "pattern": "\\d+$",
    "prefix": "sdbs",
    "sampleId": "4544",
    "uri_format": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$1"
  },
  "sedml.format": {
    "deprecated": false,
    "description": "Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).",
    "homepage": "http://sed-ml.org/",
    "id": "00000841",
    "name": "SED-ML data format",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[a-z]+(\\..*?)?$",
    "prefix": "sedml.format",
    "sampleId": "csv",
    "uri_format": "https://sed-ml.org/urns.html#format:$1"
  },
  "sedml.language": {
    "deprecated": false,
    "description": "Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).",
    "homepage": "http://sed-ml.org/",
    "id": "00000843",
    "name": "SED-ML model format",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[a-z]+(\\..*?)?$",
    "prefix": "sedml.language",
    "sampleId": "sbml.level-3.version-2",
    "uri_format": "https://sed-ml.org/urns.html#language:$1"
  },
  "seed": {
    "deprecated": false,
    "description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.",
    "id": "00000552",
    "name": "SEED Subsystem",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "seed",
    "sampleId": "Biotin_biosynthesis"
  },
  "seed.compound": {
    "deprecated": false,
    "description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.",
    "homepage": "http://modelseed.org/",
    "id": "00000553",
    "name": "SEED Compound",
    "namespaceEmbeddedInLui": false,
    "pattern": "^cpd\\d+$",
    "prefix": "seed.compound",
    "sampleId": "cpd15380",
    "uri_format": "http://modelseed.org/biochem/compounds/$1"
  },
  "seed.reaction": {
    "deprecated": false,
    "description": "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.",
    "homepage": "http://modelseed.org/biochem/reactions/",
    "id": "00000692",
    "name": "SEED Reactions",
    "namespaceEmbeddedInLui": false,
    "pattern": "^rxn\\d+$",
    "prefix": "seed.reaction",
    "sampleId": "rxn00001",
    "uri_format": "http://modelseed.org/biochem/reactions/$1"
  },
  "sgd": {
    "deprecated": false,
    "description": "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.",
    "homepage": "https://www.yeastgenome.org/",
    "id": "00000023",
    "name": "SGD",
    "namespaceEmbeddedInLui": false,
    "pattern": "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$",
    "prefix": "sgd",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "Bio2RDF",
        "homepage": "http://sgd.bio2rdf.org/fct",
        "name": "Bio2RDF",
        "uri_format": "http://sgd.bio2rdf.org/describe/?url=http://bio2rdf.org/sgd:$1"
      },
      {
        "code": "bioentitylink",
        "description": "SGD through BioEntity Link",
        "homepage": "https://bioentity.link/",
        "name": "SGD through BioEntity Link",
        "uri_format": "https://bioentity.link/#/lexicon/public/$1"
      },
      {
        "code": "agr",
        "description": "SGD through the Alliance of Genome Resources",
        "homepage": "https://www.alliancegenome.org",
        "name": "SGD through the Alliance of Genome Resources",
        "uri_format": "https://www.alliancegenome.org/gene/SGD:$1"
      }
    ],
    "sampleId": "S000003909",
    "uri_format": "https://www.yeastgenome.org/locus/$1"
  },
  "sgd.pathways": {
    "deprecated": false,
    "description": "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).",
    "homepage": "http://pathway.yeastgenome.org/",
    "id": "00000057",
    "name": "Saccharomyces genome database pathways",
    "namespaceEmbeddedInLui": false,
    "pattern": "^PWY\\w{2}\\-\\d{3}$",
    "prefix": "sgd.pathways",
    "sampleId": "PWY3O-214",
    "uri_format": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"
  },
  "sgn": {
    "deprecated": false,
    "description": "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.",
    "homepage": "http://solgenomics.net/",
    "id": "00000185",
    "name": "Sol Genomics Network",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "sgn",
    "sampleId": "0001",
    "uri_format": "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"
  },
  "sheepqtldb": {
    "deprecated": false,
    "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.",
    "homepage": "https://www.animalgenome.org/QTLdb",
    "id": "00000507",
    "name": "Animal Genome Sheep QTL",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "sheepqtldb",
    "sampleId": "19803",
    "uri_format": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"
  },
  "sider.drug": {
    "deprecated": false,
    "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.",
    "homepage": "http://sideeffects.embl.de/",
    "id": "00000435",
    "name": "SIDER Drug",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "sider.drug",
    "sampleId": "2244",
    "uri_format": "http://sideeffects.embl.de/drugs/$1/"
  },
  "sider.effect": {
    "deprecated": false,
    "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.",
    "homepage": "http://sideeffects.embl.de/",
    "id": "00000436",
    "name": "SIDER Side Effect",
    "namespaceEmbeddedInLui": false,
    "pattern": "^C\\d+$",
    "prefix": "sider.effect",
    "sampleId": "C0017565",
    "uri_format": "http://sideeffects.embl.de/se/$1/"
  },
  "signaling-gateway": {
    "deprecated": false,
    "description": "The Signaling Gateway provides  information on  mammalian proteins involved in cellular signaling.",
    "homepage": "http://www.signaling-gateway.org/molecule",
    "id": "00000045",
    "name": "Signaling Gateway",
    "namespaceEmbeddedInLui": false,
    "pattern": "A\\d{6}$",
    "prefix": "signaling-gateway",
    "sampleId": "A001094",
    "uri_format": "http://www.signaling-gateway.org/molecule/query?afcsid=$1"
  },
  "signor": {
    "deprecated": false,
    "description": "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature.",
    "homepage": "https://signor.uniroma2.it/",
    "id": "00000808",
    "name": "SIGNOR",
    "namespaceEmbeddedInLui": false,
    "pattern": "^SIGNOR\\-[A-Z]+\\d+$",
    "prefix": "signor",
    "sampleId": "SIGNOR-C2",
    "uri_format": "https://signor.uniroma2.it/relation_result.php?id=$1"
  },
  "sio": {
    "deprecated": false,
    "description": "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities.",
    "homepage": "https://www.ebi.ac.uk",
    "id": "00000851",
    "name": "Semanticscience Integrated Ontology",
    "namespaceEmbeddedInLui": false,
    "pattern": "^SIO_\\d{6,6}$",
    "prefix": "sio",
    "sampleId": "SIO_000276",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/sio/terms?short_form=$1"
  },
  "sisu": {
    "deprecated": false,
    "description": "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.",
    "homepage": "http://www.sisuproject.fi/",
    "id": "00000624",
    "name": "SISu",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]+:[0-9]+$",
    "prefix": "sisu",
    "sampleId": "17:41223048",
    "uri_format": "http://search.sisuproject.fi/#/variant/$1"
  },
  "sitex": {
    "deprecated": false,
    "description": "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.",
    "homepage": "http://www-bionet.sscc.ru/sitex/",
    "id": "00000252",
    "name": "SitEx",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "sitex",
    "sampleId": "1000",
    "uri_format": "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"
  },
  "slm": {
    "deprecated": false,
    "description": "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.",
    "homepage": "http://www.swisslipids.org/#/",
    "id": "00000550",
    "name": "SwissLipids",
    "namespaceEmbeddedInLui": true,
    "pattern": "^SLM:\\d+$",
    "prefix": "slm",
    "sampleId": "000048885",
    "uri_format": "http://www.swisslipids.org/#/entity/SLM:$1/"
  },
  "smart": {
    "deprecated": false,
    "description": "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.",
    "homepage": "http://smart.embl-heidelberg.de/",
    "id": "00000118",
    "name": "SMART",
    "namespaceEmbeddedInLui": false,
    "pattern": "^SM\\d{5}$",
    "prefix": "smart",
    "sampleId": "SM00015",
    "uri_format": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"
  },
  "smpdb": {
    "deprecated": false,
    "description": "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.",
    "homepage": "https://smpdb.ca/",
    "id": "00000104",
    "name": "Small Molecule Pathway Database",
    "namespaceEmbeddedInLui": false,
    "pattern": "^SMP\\d+$",
    "prefix": "smpdb",
    "sampleId": "SMP00001",
    "uri_format": "http://smpdb.ca/view/$1"
  },
  "snomedct": {
    "deprecated": false,
    "description": "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.",
    "homepage": "http://www.snomedbrowser.com/",
    "id": "00000269",
    "name": "SNOMED CT",
    "namespaceEmbeddedInLui": false,
    "pattern": "^(\\w+)?\\d+$",
    "prefix": "snomedct",
    "sampleId": "284196006",
    "uri_format": "http://www.snomedbrowser.com/Codes/Details/$1"
  },
  "snp2tfbs": {
    "deprecated": false,
    "description": "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome.",
    "homepage": "https://ccg.epfl.ch/snp2tfbs/",
    "id": "00000766",
    "name": "SNP2TFBS",
    "namespaceEmbeddedInLui": false,
    "pattern": "^rs[0-9]+$",
    "prefix": "snp2tfbs",
    "sampleId": "rs11603840",
    "uri_format": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1"
  },
  "so": {
    "deprecated": false,
    "description": "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.",
    "homepage": "http://www.sequenceontology.org/",
    "id": "00000081",
    "name": "Sequence Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^SO:\\d{7}$",
    "prefix": "so",
    "sampleId": "0000704",
    "uri_format": "http://www.sequenceontology.org/miso/current_release/term/SO:$1"
  },
  "soybase": {
    "deprecated": false,
    "description": "SoyBase is a repository for curated genetics, genomics and related data resources for soybean.",
    "homepage": "http://soybase.org/",
    "id": "00000291",
    "name": "SoyBase",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+(\\-)?\\w+(\\-)?\\w+$",
    "prefix": "soybase",
    "sampleId": "BARC-013845-01256",
    "uri_format": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"
  },
  "spdx": {
    "deprecated": false,
    "description": "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.",
    "homepage": "https://spdx.org",
    "id": "00000687",
    "name": "SPDX License List",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9A-Za-z\\-.]+$",
    "prefix": "spdx",
    "sampleId": "CC-BY-1.0",
    "uri_format": "https://spdx.org/licenses/$1"
  },
  "spike.map": {
    "deprecated": false,
    "description": "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.",
    "homepage": "http://www.cs.tau.ac.il/~spike/",
    "id": "00000321",
    "name": "SPIKE Map",
    "namespaceEmbeddedInLui": false,
    "pattern": "^spike\\d{5}$",
    "prefix": "spike.map",
    "sampleId": "spike00001",
    "uri_format": "http://www.cs.tau.ac.il/~spike/maps/$1.html"
  },
  "splash": {
    "deprecated": false,
    "description": "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance.",
    "homepage": "http://mona.fiehnlab.ucdavis.edu/",
    "id": "00000566",
    "name": "SPLASH",
    "namespaceEmbeddedInLui": false,
    "pattern": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$",
    "prefix": "splash",
    "sampleId": "splash10-0zq2000000-77302b0326a418630a84",
    "uri_format": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1"
  },
  "spp": {
    "deprecated": false,
    "description": "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways.",
    "homepage": "https://www.signalingpathways.org/index.jsf",
    "id": "00000726",
    "name": "Signaling Pathways Project",
    "namespaceEmbeddedInLui": false,
    "pattern": "^10.\\w{4}/\\w{10}$",
    "prefix": "spp",
    "sampleId": "10.1621/vwN2g2HaX3",
    "uri_format": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1"
  },
  "stap": {
    "deprecated": false,
    "description": "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).",
    "homepage": "http://psb.kobic.re.kr/STAP/refinement/",
    "id": "00000399",
    "name": "STAP",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9][A-Za-z0-9]{3}$",
    "prefix": "stap",
    "sampleId": "1a24",
    "uri_format": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"
  },
  "stitch": {
    "deprecated": false,
    "description": "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.",
    "homepage": "http://stitch.embl.de/",
    "id": "00000266",
    "name": "STITCH",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w{14}$",
    "prefix": "stitch",
    "sampleId": "BQJCRHHNABKAKU",
    "uri_format": "http://stitch.embl.de/interactions/$1"
  },
  "storedb": {
    "deprecated": false,
    "description": "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.",
    "homepage": "https://www.storedb.org/",
    "id": "00000577",
    "name": "STOREDB",
    "namespaceEmbeddedInLui": false,
    "pattern": "^STOREDB:(STUDY|FILE|DATASET)\\d+$",
    "prefix": "storedb",
    "sampleId": "STOREDB:STUDY1040",
    "uri_format": "https://www.storedb.org/?$1"
  },
  "string": {
    "deprecated": false,
    "description": "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.",
    "homepage": "http://string.embl.de/",
    "id": "00000265",
    "name": "STRING",
    "namespaceEmbeddedInLui": false,
    "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$",
    "prefix": "string",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "STRING Mirror at Heidelberg",
        "homepage": "http://string-db.org/",
        "name": "STRING Mirror at Heidelberg",
        "uri_format": "http://string-db.org/interactions/$1"
      }
    ],
    "sampleId": "P53350",
    "uri_format": "http://string.embl.de/interactions/$1"
  },
  "subtilist": {
    "deprecated": false,
    "description": "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.",
    "homepage": "http://genolist.pasteur.fr/SubtiList/",
    "id": "00000433",
    "name": "SubtiList",
    "namespaceEmbeddedInLui": false,
    "pattern": "^BG\\d+$",
    "prefix": "subtilist",
    "sampleId": "BG11523",
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    "deprecated": false,
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    "deprecated": false,
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    "uri_format": "http://www.t3db.org/toxins/$1"
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "uri_format": "http://arabidopsis.org/servlets/TairObject?accession=$1"
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    "description": "TarBase stores microRNA (miRNA) information for miRNA\u2013gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.",
    "homepage": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index",
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    "deprecated": false,
    "description": "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.",
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    "sampleId": "9606",
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    "deprecated": false,
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    "deprecated": false,
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    "uri_format": "http://ciliate.org/index.php/feature/details/$1"
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    "deprecated": false,
    "description": "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.",
    "homepage": "http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi",
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    "deprecated": false,
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    "name": "Tree of Life",
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    "deprecated": false,
    "description": "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.",
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    "uri_format": "http://topdb.enzim.hu/?m=show&id=$1"
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    "deprecated": false,
    "description": "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.",
    "homepage": "http://clipserve.clip.ubc.ca/topfind",
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    "prefix": "topfind",
    "sampleId": "Q9UKQ2",
    "uri_format": "http://clipserve.clip.ubc.ca/topfind/proteins/$1"
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
    "description": "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
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    "deprecated": false,
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    "deprecated": false,
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    "deprecated": false,
    "description": "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).",
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    "deprecated": false,
    "description": "The UniProt Archive (UniParc) is a  database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.",
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    "deprecated": false,
    "description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds.",
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    "deprecated": false,
    "description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.",
    "id": "00000570",
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    "deprecated": false,
    "description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information.",
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    "prefix": "uniprot",
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    "uri_format": "http://purl.uniprot.org/uniprot/$1"
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    "deprecated": false,
    "description": "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein.",
    "homepage": "https://www.uniprot.org",
    "id": "00000739",
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    "deprecated": false,
    "description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.",
    "homepage": "http://www.uniprot.org/",
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    "namespaceEmbeddedInLui": false,
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        "uri_format": "http://purl.uniprot.org/uniprot/$1"
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        "name": "UniProt Isoform through UniParc",
        "uri_format": "http://www.uniprot.org/uniparc/?query=$1"
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    ],
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    "uri_format": "http://www.uniprot.org/uniprot/$1"
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  "uniref": {
    "deprecated": false,
    "description": "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view.",
    "homepage": "https://www.uniprot.org/",
    "id": "00000878",
    "name": "UniRef",
    "namespaceEmbeddedInLui": false,
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    "prefix": "uniref",
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    "uri_format": "https://www.uniprot.org/uniref/$1"
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    "deprecated": false,
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    "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists",
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    "name": "UniSTS",
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    "sampleId": "456789",
    "uri_format": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1"
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  "unite": {
    "deprecated": false,
    "description": "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa.",
    "homepage": "http://unite.ut.ee/",
    "id": "00000352",
    "name": "Unite",
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    "prefix": "unite",
    "sampleId": "UDB000691",
    "uri_format": "http://unite.ut.ee/bl_forw.php?nimi=$1"
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  "uo": {
    "deprecated": false,
    "description": "Ontology of standardized units",
    "homepage": "https://www.ebi.ac.uk/ols/ontologies/uo",
    "id": "00000136",
    "name": "Unit Ontology",
    "namespaceEmbeddedInLui": true,
    "pattern": "^UO:\\d{7}?",
    "prefix": "uo",
    "sampleId": "0000080",
    "uri_format": "https://www.ebi.ac.uk/ols/ontologies/uo/terms?obo_id=UO:$1"
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  "uspto": {
    "deprecated": false,
    "description": "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement.",
    "homepage": "http://patft.uspto.gov/netahtml/PTO/index.html",
    "id": "00000538",
    "name": "USPTO",
    "namespaceEmbeddedInLui": false,
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  "validatordb": {
    "deprecated": false,
    "description": "Database of validation results for ligands and non-standard residues in the Protein Data Bank.",
    "homepage": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/",
    "id": "00000633",
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    "uri_format": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/$1"
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  "vario": {
    "deprecated": false,
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    "homepage": "http://bioportal.bioontology.org/ontologies/VARIO",
    "id": "00000406",
    "name": "VariO",
    "namespaceEmbeddedInLui": true,
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        "name": "VariO at Lund University",
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    "sampleId": "0294",
    "uri_format": "http://purl.bioontology.org/ontology/VARIO/VariO:$1"
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  "vbase2": {
    "deprecated": false,
    "description": "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.",
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    "id": "00000320",
    "name": "Vbase2",
    "namespaceEmbeddedInLui": false,
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    "sampleId": "humIGHV025",
    "uri_format": "http://www.vbase2.org/vgene.php?id=$1"
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  "vbrc": {
    "deprecated": false,
    "description": "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.",
    "homepage": "http://vbrc.org/",
    "id": "00000448",
    "name": "VBRC",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "vbrc",
    "sampleId": "35742",
    "uri_format": "http://vbrc.org/gene_detail.asp?gene_id=$1"
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  "vcell": {
    "deprecated": false,
    "description": "Models developed with the Virtual Cell (VCell) software prorgam.",
    "homepage": "https://health.uconn.edu/",
    "id": "00000893",
    "name": "VCell Published Models",
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    "pattern": "^\\d{5,}$",
    "prefix": "vcell",
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  "vectorbase": {
    "deprecated": false,
    "description": "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.",
    "homepage": "https://www.vectorbase.org/",
    "id": "00000232",
    "name": "VectorBase",
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    "pattern": "^\\D{4}\\d{6}(\\-\\D{2})?$",
    "prefix": "vectorbase",
    "sampleId": "ISCW007415",
    "uri_format": "https://www.vectorbase.org/search/site/$1?&site=\"Genome\""
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  "vegbank": {
    "deprecated": false,
    "description": "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. ",
    "homepage": "http://vegbank.org/",
    "id": "00000723",
    "name": "VegBank",
    "namespaceEmbeddedInLui": false,
    "pattern": "^VB\\.[A-Za-z][A-Za-z]\\..*$",
    "prefix": "vegbank",
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  "vfb": {
    "deprecated": false,
    "description": "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster.",
    "homepage": "https://VirtualFlyBrain.org",
    "id": "00000680",
    "name": "Virtual Fly Brain",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9a-zA-Z]{8}$",
    "prefix": "vfb",
    "sampleId": "00000001",
    "uri_format": "http://virtualflybrain.org/reports/$1"
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  "vfdb.gene": {
    "deprecated": false,
    "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.",
    "homepage": "http://www.mgc.ac.cn/VFs/",
    "id": "00000472",
    "name": "VFDB Gene",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
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    "uri_format": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1"
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  "vfdb.genus": {
    "deprecated": false,
    "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.",
    "homepage": "http://www.mgc.ac.cn/VFs/",
    "id": "00000471",
    "name": "VFDB Genus",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+$",
    "prefix": "vfdb.genus",
    "sampleId": "Chlamydia",
    "uri_format": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1"
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  "vgnc": {
    "deprecated": false,
    "description": "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee.",
    "homepage": "https://vertebrate.genenames.org",
    "id": "00000765",
    "name": "VGNC",
    "namespaceEmbeddedInLui": false,
    "pattern": "^((VGNC|vgnc):)?\\d{1,9}$",
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    "uri_format": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1"
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  "viaf": {
    "deprecated": false,
    "description": "The VIAF\u00ae (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web.",
    "homepage": "http://viaf.org",
    "id": "00000685",
    "name": "Virtual International Authority File",
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    "prefix": "viaf",
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    "uri_format": "http://viaf.org/viaf/$1"
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  "vipr": {
    "deprecated": false,
    "description": "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures,  and host factor data. This collection references viral strain information.",
    "homepage": "http://www.viprbrc.org/brc/home.do?decorator=vipr",
    "id": "00000407",
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    "uri_format": "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena"
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    "deprecated": false,
    "description": "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.",
    "homepage": "http://www.expasy.org/viralzone/",
    "id": "00000449",
    "name": "ViralZone",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
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    "sampleId": "992",
    "uri_format": "http://viralzone.expasy.org/all_by_protein/$1.html"
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  "virsirna": {
    "deprecated": false,
    "description": "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.",
    "homepage": "http://crdd.osdd.net/servers/virsirnadb",
    "id": "00000249",
    "name": "VIRsiRNA",
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    "uri_format": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1"
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    "description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.",
    "homepage": "https://www.vmh.life/",
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    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]+\\.[0-9]+",
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    "uri_format": "https://www.vmh.life/#gene/$1"
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    "deprecated": false,
    "description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.",
    "homepage": "https://www.vmh.life/",
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    "name": "VMH metabolite",
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  "vmhreaction": {
    "deprecated": false,
    "description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.",
    "homepage": "https://www.vmh.life/",
    "id": "00000640",
    "name": "VMH reaction",
    "namespaceEmbeddedInLui": false,
    "pattern": "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+",
    "prefix": "vmhreaction",
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    "deprecated": false,
    "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities.",
    "homepage": "https://www.wormbase.org/",
    "id": "00000027",
    "name": "WormBase",
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        "uri_format": "https://bioentity.link/#/lexicon/public/$1"
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        "homepage": "https://www.alliancegenome.org",
        "name": "WormBase through the Alliance of Genome Resources",
        "uri_format": "https://www.alliancegenome.org/gene/WB:$1"
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    "uri_format": "https://www.wormbase.org/get?name=$1"
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    "deprecated": false,
    "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.",
    "homepage": "https://www.wormbase.org/",
    "id": "00000466",
    "name": "WormBase RNAi",
    "namespaceEmbeddedInLui": false,
    "pattern": "^WBRNAi\\d{8}$",
    "prefix": "wb.rnai",
    "sampleId": "WBRNAi00086878",
    "uri_format": "https://www.wormbase.org/species/c_elegans/rnai/$1"
  },
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    "deprecated": false,
    "description": "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic.",
    "homepage": "https://www.wikidata.org/",
    "id": "00000549",
    "name": "Wikidata",
    "namespaceEmbeddedInLui": false,
    "pattern": "^(Q|P)\\d+$",
    "prefix": "wikidata",
    "sampleId": "Q2207226",
    "uri_format": "http://www.wikidata.org/entity/$1"
  },
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    "deprecated": false,
    "description": "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.",
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    "id": "00000437",
    "name": "WikiGenes",
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    "pattern": "^\\d+$",
    "prefix": "wikigenes",
    "sampleId": "3771877",
    "uri_format": "http://www.wikigenes.org/e/gene/e/$1.html"
  },
  "wikipathways": {
    "deprecated": false,
    "description": "WikiPathways is a resource providing an open and public collection of  pathway maps created and curated by the community in a Wiki like style.\r\nAll content is under the Creative Commons Attribution 3.0 Unported license.",
    "homepage": "http://www.wikipathways.org/",
    "id": "00000076",
    "name": "WikiPathways",
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    "pattern": "WP\\d{1,5}(\\_r\\d+)?$",
    "prefix": "wikipathways",
    "providers": [
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        "code": "scholia",
        "description": "Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata.\n",
        "homepage": "https://scholia.toolforge.org/",
        "name": "Scholia",
        "uri_format": "https://scholia.toolforge.org/wikipathways/$1"
      }
    ],
    "sampleId": "WP100",
    "uri_format": "http://www.wikipathways.org/instance/$1"
  },
  "wikipedia.en": {
    "deprecated": false,
    "description": "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.",
    "homepage": "http://en.wikipedia.org/wiki/Main_Page",
    "id": "00000384",
    "name": "Wikipedia (En)",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Za-z-0-9_]+$",
    "prefix": "wikipedia.en",
    "providers": [
      {
        "code": "CURATOR_REVIEW",
        "description": "Wikipedia structured content through DBpedia",
        "homepage": "http://wiki.dbpedia.org/",
        "name": "Wikipedia structured content through DBpedia",
        "uri_format": "http://dbpedia.org/page/$1"
      }
    ],
    "sampleId": "SM_UB-81",
    "uri_format": "http://en.wikipedia.org/wiki/$1"
  },
  "worfdb": {
    "deprecated": false,
    "description": "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends).",
    "homepage": "http://worfdb.dfci.harvard.edu/",
    "id": "00000288",
    "name": "Worfdb",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+(\\.\\d+)?",
    "prefix": "worfdb",
    "sampleId": "T01B6.1",
    "uri_format": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1"
  },
  "wormpep": {
    "deprecated": false,
    "description": "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project.",
    "homepage": "https://www.wormbase.org/db/seq/protein",
    "id": "00000031",
    "name": "Wormpep",
    "namespaceEmbeddedInLui": false,
    "pattern": "^CE\\d{5}$",
    "prefix": "wormpep",
    "sampleId": "CE28239",
    "uri_format": "https://www.wormbase.org/db/seq/protein?name=$1"
  },
  "worms": {
    "deprecated": false,
    "description": "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts.",
    "homepage": "http://www.marinespecies.org/",
    "id": "00000581",
    "name": "World Register of Marine Species",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "worms",
    "sampleId": "146421",
    "uri_format": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1"
  },
  "xenbase": {
    "deprecated": false,
    "description": "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.",
    "homepage": "https://www.xenbase.org/",
    "id": "00000186",
    "name": "Xenbase",
    "namespaceEmbeddedInLui": false,
    "pattern": "^XB\\-\\w+\\-\\d+$",
    "prefix": "xenbase",
    "sampleId": "XB-GENE-922462",
    "uri_format": "https://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=$1"
  },
  "ydpm": {
    "deprecated": false,
    "description": "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.",
    "homepage": "http://www-deletion.stanford.edu/YDPM/",
    "id": "00000465",
    "name": "YDPM",
    "namespaceEmbeddedInLui": false,
    "pattern": "^Y[A-Z]{2}\\d+[CW]$",
    "prefix": "ydpm",
    "sampleId": "YAL001C",
    "uri_format": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1"
  },
  "yeastintron": {
    "deprecated": false,
    "description": "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].",
    "homepage": "http://intron.ucsc.edu/yeast4.3/",
    "id": "00000521",
    "name": "Yeast Intron Database v4.3",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z0-9]+$",
    "prefix": "yeastintron",
    "sampleId": "SNR17A",
    "uri_format": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=$1"
  },
  "yetfasco": {
    "deprecated": false,
    "description": "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats.",
    "homepage": "http://yetfasco.ccbr.utoronto.ca/",
    "id": "00000339",
    "name": "YeTFasCo",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\w+\\_\\d+(\\.\\d+)?$",
    "prefix": "yetfasco",
    "sampleId": "YOR172W_571.0",
    "uri_format": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1"
  },
  "yid": {
    "deprecated": false,
    "description": "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].",
    "homepage": "http://compbio.soe.ucsc.edu/yeast_introns.html",
    "id": "00000460",
    "name": "Yeast Intron Database v3",
    "namespaceEmbeddedInLui": false,
    "pattern": "^[A-Z0-9]+$",
    "prefix": "yid",
    "sampleId": "SNR17A",
    "uri_format": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1"
  },
  "yrcpdr": {
    "deprecated": false,
    "description": "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.",
    "homepage": "http://www.yeastrc.org/pdr/",
    "id": "00000459",
    "name": "YRC PDR",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d+$",
    "prefix": "yrcpdr",
    "sampleId": "2673500",
    "uri_format": "http://yeastrc.org/pdr/viewProtein.do?id=$1"
  },
  "zfin": {
    "deprecated": false,
    "description": "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.",
    "homepage": "http://zfin.org",
    "id": "00000079",
    "name": "ZFIN Bioentity",
    "namespaceEmbeddedInLui": false,
    "pattern": "^ZDB\\-\\w+\\-\\d+\\-\\d+$",
    "prefix": "zfin",
    "providers": [
      {
        "code": "bioentitylink",
        "description": "ZFIN through BioEntity Link",
        "homepage": "https://bioentity.link/",
        "name": "ZFIN through BioEntity Link",
        "uri_format": "https://bioentity.link/#/lexicon/public/$1"
      },
      {
        "code": "agr",
        "description": "ZFIN through the Alliance of Genome Resources",
        "homepage": "https://www.alliancegenome.org",
        "name": "ZFIN through the Alliance of Genome Resources",
        "uri_format": "https://test.alliancegenome.org/gene/ZFIN:$1"
      }
    ],
    "sampleId": "ZDB-GENE-041118-11",
    "uri_format": "http://zfin.org/$1"
  },
  "zinc": {
    "deprecated": false,
    "description": "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.",
    "homepage": "http://zinc15.docking.org/",
    "id": "00000529",
    "name": "ZINC",
    "namespaceEmbeddedInLui": false,
    "pattern": "^(ZINC)?\\d+$",
    "prefix": "zinc",
    "sampleId": "ZINC1084",
    "uri_format": "http://zinc15.docking.org/substances/$1"
  }
}