LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/img/bioregistry_coverage.svg
docs/img/external_overlap.svg
docs/img/has_attribute.svg
docs/img/license_coverage.svg
docs/img/licenses.svg
docs/img/xrefs.svg
docs/source/cli.rst
docs/source/conf.py
docs/source/index.rst
docs/source/installation.rst
docs/source/logo.png
src/bioregistry/__init__.py
src/bioregistry/__main__.py
src/bioregistry/cli.py
src/bioregistry/compare.py
src/bioregistry/constants.py
src/bioregistry/generate_warnings_file.py
src/bioregistry/lint.py
src/bioregistry/resolve.py
src/bioregistry/resolve_identifier.py
src/bioregistry/upload_ndex.py
src/bioregistry/utils.py
src/bioregistry/version.py
src/bioregistry.egg-info/PKG-INFO
src/bioregistry.egg-info/SOURCES.txt
src/bioregistry.egg-info/dependency_links.txt
src/bioregistry.egg-info/entry_points.txt
src/bioregistry.egg-info/not-zip-safe
src/bioregistry.egg-info/requires.txt
src/bioregistry.egg-info/top_level.txt
src/bioregistry/align/__init__.py
src/bioregistry/align/__main__.py
src/bioregistry/align/biolink.py
src/bioregistry/align/bioportal.py
src/bioregistry/align/cellosaurus.py
src/bioregistry/align/cli.py
src/bioregistry/align/go.py
src/bioregistry/align/miriam.py
src/bioregistry/align/n2t.py
src/bioregistry/align/ncbi.py
src/bioregistry/align/obofoundry.py
src/bioregistry/align/ols.py
src/bioregistry/align/prefix_commons.py
src/bioregistry/align/uniprot.py
src/bioregistry/align/utils.py
src/bioregistry/align/wikidata.py
src/bioregistry/app/__init__.py
src/bioregistry/app/api.py
src/bioregistry/app/test.py
src/bioregistry/app/ui.py
src/bioregistry/app/utils.py
src/bioregistry/app/wsgi.py
src/bioregistry/app/static/logo.svg
src/bioregistry/app/templates/base.html
src/bioregistry/app/templates/collection.html
src/bioregistry/app/templates/collections.html
src/bioregistry/app/templates/home.html
src/bioregistry/app/templates/macros.html
src/bioregistry/app/templates/metaresource.html
src/bioregistry/app/templates/metaresources.html
src/bioregistry/app/templates/prose.html
src/bioregistry/app/templates/reference.html
src/bioregistry/app/templates/resource.html
src/bioregistry/app/templates/resources.html
src/bioregistry/app/templates/meta/access.html
src/bioregistry/app/templates/meta/download.html
src/bioregistry/app/templates/meta/schema.html
src/bioregistry/app/templates/meta/summary.html
src/bioregistry/app/templates/meta/sustainability.html
src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html
src/bioregistry/app/templates/resolve_errors/invalid_identifier.html
src/bioregistry/app/templates/resolve_errors/missing_prefix.html
src/bioregistry/app/templates/resolve_errors/missing_providers.html
src/bioregistry/curation/__init__.py
src/bioregistry/curation/add_examples.py
src/bioregistry/curation/add_examples_from_javert.py
src/bioregistry/curation/make_description_curation_sheet.py
src/bioregistry/curation/wikidata_curation.py
src/bioregistry/data/__init__.py
src/bioregistry/data/bioregistry.json
src/bioregistry/data/collections.json
src/bioregistry/data/metaregistry.json
src/bioregistry/data/mismatch.json
src/bioregistry/data/obsolete.json
src/bioregistry/data/ols_processing.json
src/bioregistry/data/processing_biolink.json
src/bioregistry/data/processing_go.json
src/bioregistry/data/wikidata_property_types.json
src/bioregistry/data/external/biolink/processed.json
src/bioregistry/data/external/biolink/raw.yaml
src/bioregistry/data/external/bioportal/processed.json
src/bioregistry/data/external/bioportal/raw.json
src/bioregistry/data/external/cellosaurus/processed.json
src/bioregistry/data/external/cellosaurus/raw.txt
src/bioregistry/data/external/go/processed.json
src/bioregistry/data/external/go/raw.yml
src/bioregistry/data/external/miriam/processed.json
src/bioregistry/data/external/miriam/raw.json
src/bioregistry/data/external/n2t/processed.json
src/bioregistry/data/external/n2t/raw.yml
src/bioregistry/data/external/ncbi/processed.json
src/bioregistry/data/external/ncbi/raw.html
src/bioregistry/data/external/obofoundry/processed.json
src/bioregistry/data/external/obofoundry/raw.yaml
src/bioregistry/data/external/ols/processed.json
src/bioregistry/data/external/ols/raw.json
src/bioregistry/data/external/prefixcommons/processed.json
src/bioregistry/data/external/prefixcommons/raw.json
src/bioregistry/data/external/uniprot/processed.json
src/bioregistry/data/external/uniprot/raw.xml
src/bioregistry/data/external/uniprot/uniprot.json
src/bioregistry/data/external/uniprot/uniprot.xml
src/bioregistry/data/external/wikidata/processed.json
src/bioregistry/data/external/wikidata/raw.json
src/bioregistry/export/__init__.py
src/bioregistry/export/__main__.py
src/bioregistry/export/cli.py
src/bioregistry/export/prefix_maps.py
src/bioregistry/export/rdf_export.py
src/bioregistry/export/tsv_export.py
src/bioregistry/export/yaml_export.py
src/bioregistry/external/__init__.py
src/bioregistry/external/biolink.py
src/bioregistry/external/bioportal.py
src/bioregistry/external/cellosaurus.py
src/bioregistry/external/cli.py
src/bioregistry/external/go.py
src/bioregistry/external/miriam.py
src/bioregistry/external/n2t.py
src/bioregistry/external/ncbi.py
src/bioregistry/external/obofoundry.py
src/bioregistry/external/ols.py
src/bioregistry/external/prefix_commons.py
src/bioregistry/external/uniprot.py
src/bioregistry/external/wikidata.py
src/bioregistry/gh/__init__.py
src/bioregistry/gh/github_client.py
src/bioregistry/gh/new_prefix.py
src/bioregistry/schema/__init__.py
src/bioregistry/schema/constants.py
src/bioregistry/schema/schema.json
src/bioregistry/schema/struct.py
tests/__init__.py
tests/test_collections.py
tests/test_data.py
tests/test_duplicates.py
tests/test_identifiers_org.py
tests/test_indra.py
tests/test_metaregistry.py
tests/test_obofoundry.py
tests/test_resolve.py