# This file was created by pfx, combining redirect records
# from the NAANs, EZID shoulders, idot, and PrefixCommmons registries.
# XXX add high priority schemes before rest

# Section start -- n2t-local prefixes

ark:
  type: "scheme"
  name: "Archival Resource Key"
  alias: 
  provider: "n2t"
  primary: "true"
  redirect: "n2t.net/ark:$id"
  test: "/88435/hq37vq534"
  probe: "http://n2t.net/ark:/88435/hq37vq534"
  more: "https://wiki.ucop.edu/display/Curation/ARK"

ror:
  type: "scheme"
  name: "Research Organization Registry"
  alias: 
  primary: "true"
  redirect: "https://ror.org/$id"
  test: "03yrm5c26"
  probe: "https://ror.org/03yrm5c26"
  more: "http://ror.org"

hdl:
  type: "scheme"
  name: "Handle System Identifier"
  alias: handle
  primary: "true"
  redirect: "http://hdl.handle.net/$id"
  test: "4263537/4000"
  probe: "http://hdl.handle.net/4263537/4000"
  more: "http://www.handle.net"

igsn:
  type: "scheme"
  name: "International Geo Sample Number"
  alias: 
  primary: "true"
  redirect: "hdl.handle.net/10273/$id"
  test: "SSH000SUA"
  probe: "http://hdl.handle.net/10273/SSH000SUA"
  more: "http://www.geosamples.org/"

purl:
  type: "scheme"
  name: "Persistent URL"
  alias: 
  primary: "true"
  redirect: "http://purl.org/$id"
  test: "dc/terms/creator"
  probe: "http://purl.org/dc/terms/creator"
  more: "http://purl.org/"

rfc:
  type: "scheme"
  name: "Internet Standard -- IETF Request for Comments"
  alias: 
  primary: "true"
  redirect: "https://tools.ietf.org/rfc/rfc$id"
  test: "5013"
  probe: "https://tools.ietf.org/rfc/rfc5013"
  more: "https://www.ietf.org/"

lsid:
  type: "scheme"
  name: "Life Sciences Identifier"
  alias: 
  primary: "true"
  redirect: "http://www.lsid.info/urn:$id"
  test: "lsid:ipni.org:names:77145066-1:1.4"
  probe: "http://www.lsid.info/urn:lsid:ipni.org:names:77145066-1:1.4"
  more: "https://www.lsid.info/"

url:
  type: "scheme"
  name: "Uniform Resource Locator"
  alias: 
  primary: "true"
  redirect: "$id"
  test: "www.w3c.org"
  probe: "http://www.w3c.org"
  more: "https://www.w3c.org/"

urn:
  type: "scheme"
  name: "Uniform Resource Name"
  alias: 
  primary: "true"
  forward: "http://nbn-resolving.org/resolver?identifier=urn:${ac}&verb=redirect"
  redirect: "http://nbn-resolving.org/resolver?identifier=urn:$id&verb=redirect"
  description: "Uniform Resource Names (URNs) are intended to serve as persistent, location-independent, resource identifiers."
  location: "Germany"
  institution: "Deutsche Nationalbibliothek, Frankfurt"
  prefixed: "false"
  test: "urn:nbn:fi:tkk-004781"
  probe: "http://nbn-resolving.org/resolver?identifier=urn:nbn:fi:tkk-004781&verb=redirect"
  more: "https://tools.ietf.org/html/rfc2141"

repec:
  type: "scheme"
  name: "Research Papers in Economics"
  alias: 
  primary: "true"
  redirect: "http://econpapers.repec.org/$id"
  test: "pdi221"
  probe: "http://econpapers.repec.org/pdi221"
  more: "http://repec.org/"

# N2T needs its own entry for NBN, which is really URN:NBN. It's the only
# case where the ${ac} substitution doesn't work, since identifiers.org
# adds urn:nbn: to the ${ac} value after classifying it (as "NBN").
nbn:
  type: "scheme"
  name: "NBN through URN Resolver at German National Library"
  alias: 
  provider: 
  provider_id: "MIR:00100488"
  sort_score: "1"
  primary: "false"
  forward: "http://nbn-resolving.org/resolver?identifier=urn:nbn:${ac}&verb=redirect"
  redirect: "http://nbn-resolving.org/resolver?identifier=urn:nbn:$id&verb=redirect"
  description: "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland.  They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier."
  subject: "bibliography"
  location: "Germany"
  synonym: "NBN"
  institution: "Deutsche Nationalbibliothek, Frankfurt"
  prefixed: "false"
  test: "urn:nbn:fi:tkk-004781"
  probe: "http://nbn-resolving.org/resolver?identifier=urn:nbn:fi:tkk-004781&verb=redirect"
  pattern: "^urn\\:nbn\\:[A-Za-z_0-9]+\\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$"
  state: "99:Unknown"
  more: "http://nbn-resolving.org/resolve_urn.htm"

# RePEc:aaa:ssssss:xxxxx where aaa is a three-letter archive code, ssssss
# is a six-letter series or journal code, and xxxxx is a code for a
# particular item, which can be any number of characters. The only
# exceptions to this rule are author short-IDs, of the form pxxyyyy where
# xx are two letters and yyyy are up to four (for now) digits, and
# institutions handles, of the form RePEc:edi:yyyyyyy where yyyyyyy are
# seven characters.

# RePEc:fip:fedkrm:y:2013:n:qi
# econpapers.repec.org/RePEc:fip:fedkrm:y:2013:n:qi
# yyy these test prefixes should be moved to a proper test area

zzztestprefix:
  type: "scheme"
  name: "Test Prefix"
  alias: 
  primary: "true"
  redirect: "id.example.org/$id"
  test: "0123456789"
  probe: "id.example.org/0123456789"
  more: "https://id.example.org/"

ark:/99997/6:
  type: "shoulder"
  manager: "ezid"
  name: "Test ARK Shoulder -- Minimal, Mixed case"
  redirect: "id.example.org/nothing_to_subst"
  norm: "mc"
  date: "2017.02.17"
  minter:

ark:/99998/pfx8:
  type: "shoulder"
  manager: "ezid"
  name: "Test ARK Shoulder -- Lowercasing"
  redirect: "id.example.org/${blade}&null"
  norm: "lc"
  date: "2017.02.14"
  minter:

# Section end -- n2t-local prefixes

ark:/12025:
  type: "naan"
  manager: "n2t"
  name: "US National Library of Medicine (=) USNLM"
  date: "2001.03.08"
  redirect: "http://www.nlm.nih.gov/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2001 |"

ark:/12026:
  type: "naan"
  manager: "n2t"
  name: "Library of Congress (=) USLOC"
  date: "2001.03.08"
  redirect: "http://www.loc.gov/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2001 |"

ark:/10113:
  type: "naan"
  manager: "n2t"
  name: "US National Agricultural Library (=) USNAL"
  date: "2001.03.08"
  redirect: "http://www.nal.usda.gov/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2001 |"

ark:/13030:
  type: "naan"
  manager: "n2t"
  name: "California Digital Library (=) CDLIB"
  date: "2002.07.12"
  redirect: "http://n2t.net/ark:$id"
  na_policy: "NP | NR, OP, CC | 2002 | https://n2t.net/e/ark_ids.html"

ark:/13038:
  type: "naan"
  manager: "n2t"
  name: "World Intellectual Property Organization (=) WIPO"
  date: "2002.07.12"
  redirect: "http://www.wipo.int/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2002 |"

ark:/20775:
  type: "naan"
  manager: "n2t"
  name: "University of California San Diego (=) UCSD"
  date: "2004.06.02"
  redirect: "http://libraries.ucsd.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2004 |"

ark:/29114:
  type: "naan"
  manager: "n2t"
  name: "University of California San Francisco (=) UCSF"
  date: "2004.06.02"
  redirect: "http://library.ucsf.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2004 |"

ark:/28722:
  type: "naan"
  manager: "n2t"
  name: "University of California Berkeley (=) UCBERKELEY"
  date: "2004.06.02"
  redirect: "http://library.berkeley.edu/ark:$id"
  na_policy: "NP | NR, OP, CC | 2004 |"

ark:/15230:
  type: "naan"
  manager: "n2t"
  name: "Rutgers University (=) RUTGERS"
  date: "2004.04.30"
  redirect: "http://rci.rutgers.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2004 |"

ark:/13960:
  type: "naan"
  manager: "n2t"
  name: "Internet Archive (=) IA"
  date: "2004.08.29"
  redirect: "http://n2t.net/ark:$id"
  na_policy: "NP | NR, OP, CC | 2004 |"

ark:/64269:
  type: "naan"
  manager: "n2t"
  name: "Digital Curation Centre (=) DCC"
  date: "2004.09.22"
  redirect: "http://www.dcc.ac.uk/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2004 |"

ark:/62624:
  type: "naan"
  manager: "n2t"
  name: "New York University (=) NYU"
  date: "2004.10.07"
  redirect: "http://library.nyu.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2004 |"

ark:/67531:
  type: "naan"
  manager: "n2t"
  name: "University of North Texas (=) UNT"
  date: "2004.10.07"
  redirect: "http://digital.library.unt.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2004 |"

ark:/27927:
  type: "naan"
  manager: "n2t"
  name: "Portico Digital Preservation Service (=) PORTICO"
  date: "2004.12.10"
  redirect: "http://www.portico.org/digital-preservation/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2004 |"

ark:/21198:
  type: "naan"
  manager: "n2t"
  name: "University of California Los Angeles (=) UCLA"
  date: "2005.05.02"
  redirect: "http://library.ucla.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2005 |"

ark:/12148:
  type: "naan"
  manager: "n2t"
  name: "Bibliothèque nationale de France (=) National Library of France (=) BNF"
  date: "2005.07.17"
  redirect: "http://ark.bnf.fr/ark:$id"
  na_policy: "NP | NR, OP, CC | 2005 | http://ark.bnf.fr/ark:/12148/bpt6k2102478.policy"

ark:/88435:
  type: "naan"
  manager: "n2t"
  name: "Princeton University (=) PRINCETON"
  date: "2005.10.06"
  redirect: "http://diglib.princeton.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2005 |"

ark:/89901:
  type: "naan"
  manager: "n2t"
  name: "Archives of Region of Västra Götaland and City of Gothenburg, Sweden (=) ARKIVNAMNDEN"
  date: "2005.11.30"
  redirect: "http://www.arkivnamnden.org/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2005 |"

ark:/80444:
  type: "naan"
  manager: "n2t"
  name: "Archives West (=) AWEST"
  date: "2006.01.06"
  redirect: "http://archiveswest.orbiscascade.org/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2006 |"

ark:/25593:
  type: "naan"
  manager: "n2t"
  name: "Emory University (=) EMORY"
  date: "2006.01.12"
  redirect: "http://pid.emory.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2006 |"

ark:/25031:
  type: "naan"
  manager: "n2t"
  name: "University of Kansas (=) UKANSAS"
  date: "2006.03.29"
  redirect: "http://www.lib.ku.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2006 |"

ark:/78319:
  type: "naan"
  manager: "n2t"
  name: "Google LLC (=) GOOGLE"
  date: "2006.08.22"
  redirect: "http://www.google.com/ark:$id"
  na_policy: "FP | (:unkn) unknown | 2006 |"

ark:/17101:
  type: "naan"
  manager: "n2t"
  name: "Centre for Ecology & Hydrology, UK (=) CEH"
  date: "2006.08.20"
  redirect: "http://www.ceh.ac.uk/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2006 |"

ark:/65323:
  type: "naan"
  manager: "n2t"
  name: "University of Calgary (=) UCALGARY"
  date: "2007.06.05"
  redirect: "http://library.ucalgary.ca/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2007 |"

ark:/61001:
  type: "naan"
  manager: "n2t"
  name: "University of Chicago (=) UCHICAGO"
  date: "2007.09.11"
  redirect: "http://www.lib.uchicago.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2007 |"

ark:/99152:
  type: "naan"
  manager: "n2t"
  name: "Metadata Terms (=) TERMS"
  date: "2007.10.02"
  redirect: "http://n2t.net/ark:$id"
  na_policy: "NP | NR, OP | 2007 |"

ark:/12345:
  type: "naan"
  manager: "n2t"
  name: "NAAN Reserved for use in Examples (=) EXAMPLE"
  date: "2007.10.02"
  redirect: "http://n2t.net/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2007 |"

ark:/52327:
  type: "naan"
  manager: "n2t"
  name: "Bibliothèque et Archives Nationales du Québec (=) National Library and Archives of Quebec (=) BANQ"
  date: "2007.10.18"
  redirect: "http://www.banq.qc.ca/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2007 |"

ark:/39331:
  type: "naan"
  manager: "n2t"
  name: "National Széchényi Library (=) National Library of Hungary (=) OSZK"
  date: "2008.03.05"
  redirect: "http://www.oszk.hu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2008 |"

ark:/26677:
  type: "naan"
  manager: "n2t"
  name: "Library and Archives Canada (=) Bibliothèque et Archives Canada (=) LAC"
  date: "2008.05.15"
  redirect: "http://collectionscanada.ca/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2008 |"

ark:/13681:
  type: "naan"
  manager: "n2t"
  name: "Centre de Musique Baroque de Versailles (=) CMBV"
  date: "2008.09.19"
  redirect: "http://www.cmbv.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2008 |"

ark:/87895:
  type: "naan"
  manager: "n2t"
  name: "Centre Informatique National de l'Enseignement Supérieur (=) French National Data Center for Higher Education and Scientific Research (=) CINES"
  date: "2008.10.14"
  redirect: "http://www.cines.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2008 |"

ark:/74899:
  type: "naan"
  manager: "n2t"
  name: "Bibliothèque municipale de Toulouse (=) Toulouse Municipal Library (=) BIBTOULOUSE"
  date: "2009.01.23"
  redirect: "http://www.bibliotheque.toulouse.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/61903:
  type: "naan"
  manager: "n2t"
  name: "Family Search (=) FS"
  date: "2009.02.13"
  redirect: "https://familysearch.org/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/48907:
  type: "naan"
  manager: "n2t"
  name: "University of California Santa Barbara (=) UCSB"
  date: "2009.03.13"
  redirect: "http://library.ucsb.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/36253:
  type: "naan"
  manager: "n2t"
  name: "George Eastman House - International Museum of Photography and Film (=) GEH"
  date: "2009.03.17"
  redirect: "http://www.eastmanhouse.org/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/23257:
  type: "naan"
  manager: "n2t"
  name: "Appalachian State University (=) APPSTATE"
  date: "2009.05.18"
  redirect: "http://www.appstate.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/10261:
  type: "naan"
  manager: "n2t"
  name: "Jüdisches Museum Berlin (=) Jewish Museum Berlin (=) JMBERLIN"
  date: "2009.07.22"
  redirect: "http://www.jmberlin.de/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/84475:
  type: "naan"
  manager: "n2t"
  name: "University of Houston (=) UHOUSTON"
  date: "2009.07.22"
  redirect: "https://id.lib.uh.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/71479:
  type: "naan"
  manager: "n2t"
  name: "Consejo Superior de Investigaciones Científicas (=) Spanish National Research Council (=) CSIC"
  date: "2009.10.14"
  redirect: "http://www.csic.es/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/58483:
  type: "naan"
  manager: "n2t"
  name: "Archives départementales de la Somme (=) Somme Departmental Archives (=) ADSOMME"
  date: "2009.10.21"
  redirect: "http://www.somme.fr/ark:$id"
  na_policy: "NP | NR, OP | 2009 | http://archives.somme.fr/download.cgi?filename=accounts/mnesys_ad80/datas/cms/aide_fr_v04_2.pdf"

ark:/45829:
  type: "naan"
  manager: "n2t"
  name: "Bibliothèque Cujas (=) Cujas inter-university library (Paris 1 Panthéon Sorbonne and Paris 2 Assas) (=) BIUCUJAS"
  date: "2009.10.28"
  redirect: "http://biu-cujas.univ-paris1.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/32833:
  type: "naan"
  manager: "n2t"
  name: "Massachusetts Institute of Technology (=) MIT"
  date: "2009.11.17"
  redirect: "http://libraries.mit.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/19837:
  type: "naan"
  manager: "n2t"
  name: "Simon Fraser University (=) SFU"
  date: "2009.12.16"
  redirect: "http://97.107.189.30/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2009 |"

ark:/81055:
  type: "naan"
  manager: "n2t"
  name: "British Library (=) BL"
  date: "2010.01.21"
  redirect: "http://www.bl.uk/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/68059:
  type: "naan"
  manager: "n2t"
  name: "Centre National d'Études Spatiales (=) French Space Agency (=) CNES"
  date: "2010.02.02"
  redirect: "http://www.cnes.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/55405:
  type: "naan"
  manager: "n2t"
  name: "Columbia College Chicago (=) COLUMCC"
  date: "2010.02.19"
  redirect: "http://www.colum.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/42409:
  type: "naan"
  manager: "n2t"
  name: "The Pennsylvania State University (=) PSU"
  date: "2010.03.03"
  redirect: "https://www.psu.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/29413:
  type: "naan"
  manager: "n2t"
  name: "University of Pennsylvania (=) UPENN"
  date: "2010.04.07"
  redirect: "http://www.upenn.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/16417:
  type: "naan"
  manager: "n2t"
  name: "University of Kentucky Libraries (=) UKY"
  date: "2010.04.09"
  redirect: "http://www.uky.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/77635:
  type: "naan"
  manager: "n2t"
  name: "Humboldt-Universität zu Berlin (=) Humboldt University Berlin (=) HUB"
  date: "2010.06.07"
  redirect: "http://www.hu-berlin.de/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/64981:
  type: "naan"
  manager: "n2t"
  name: "Lo CIRDÒC - Mediatèca occitana (=) CIRDOC"
  date: "2010.06.21"
  redirect: "http://www.locirdoc.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/51985:
  type: "naan"
  manager: "n2t"
  name: "University of Illinois at Urbana Champaign (=) UIUC"
  date: "2010.07.12"
  redirect: "http://illinois.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/99166:
  type: "naan"
  manager: "n2t"
  name: "People, Groups, and Institutions as Agents (=) AGENTS"
  date: "2010.08.04"
  redirect: "http://n2t.net/ark:$id"
  na_policy: "NP | NR, OP | 2010 |"

ark:/99999:
  type: "naan"
  manager: "n2t"
  name: "NAAN Reserved for Invalid or Impossible ARKs (=) INVALID"
  date: "2010.08.04"
  redirect: "http://n2t.net/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/38989:
  type: "naan"
  manager: "n2t"
  name: "The George Washington University (=) GWU"
  date: "2010.08.20"
  redirect: "http://gwu.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/25993:
  type: "naan"
  manager: "n2t"
  name: "Archives départementales du Doubs (=) ADDOUBS"
  date: "2010.08.23"
  redirect: "http://archives.doubs.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/12997:
  type: "naan"
  manager: "n2t"
  name: "Archives départementales du Territoire de Belfort (=) ADBELFORT"
  date: "2010.08.23"
  redirect: "http://www.archives.cg90.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/87553:
  type: "naan"
  manager: "n2t"
  name: "Archives de la ville de Pontivy (=) ADPONTIVY"
  date: "2010.08.23"
  redirect: "http://archives.pontivy.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/74557:
  type: "naan"
  manager: "n2t"
  name: "Rockefeller Archive Center (=) RAC"
  date: "2010.08.31"
  redirect: "http://www.rockarch.org/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2010 |"

ark:/61561:
  type: "naan"
  manager: "n2t"
  name: "les archives nationales d'outre-mer (=) National Overseas Archives (=) ANOM"
  date: "2010.09.23"
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  na_policy: "NP | (:unkn) unknown | 2013 |"

ark:/87302:
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  type: "naan"
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  na_policy: "NP | (:unkn) unknown | 2014 |"

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  type: "naan"
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  type: "naan"
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  type: "naan"
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  na_policy: "NP | (:unkn) unknown | 2016 |"

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  type: "naan"
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  na_policy: "NP | (:unkn) unknown | 2016 |"

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  type: "naan"
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  na_policy: "NP | (:unkn) unknown | 2016 |"

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  type: "naan"
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  na_policy: "NP | (:unkn) unknown | 2016 |"

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  type: "naan"
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  name: "Eclair Preservation S.A.S. (=) ECLAIR"
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  na_policy: "FP | (:unkn) unknown | 2016 |"

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  type: "naan"
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  na_policy: "NP | (:unkn) unknown | 2016 |"

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  type: "naan"
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  date: "2016.04.21"
  redirect: "https://nubis.univ-paris1.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2016 |"

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  name: "Abridged Pause Archiving (=) APR"
  date: "2021.07.07"
  redirect: "https://www.abridgedpause.com/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/31809:
  type: "naan"
  manager: "n2t"
  name: "Réseau des Médiathèques du Lunévillois. (=) RML"
  date: "2021.07.08"
  redirect: "https://www.mediatheques-du-lunevillois.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/18813:
  type: "naan"
  manager: "n2t"
  name: "Karlsruhe Institute of Technology (=) KIT"
  date: "2021.07.14"
  redirect: "https://www.kit.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/80373:
  type: "naan"
  manager: "n2t"
  name: "Dartmouth College Research, Teaching and Learning (=) RTL"
  date: "2021.07.16"
  redirect: "https://rc.dartmouth.edu/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/67378:
  type: "naan"
  manager: "n2t"
  name: "Revista Hormigón (=) RH"
  date: "2021.07.16"
  redirect: "https://revistahormigon.org/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/54382:
  type: "naan"
  manager: "n2t"
  name: "Musée des Beaux-Arts de Nancy (=) MBANANCY"
  date: "2021.07.20"
  redirect: "https://galeries.limedia.fr/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/41385:
  type: "naan"
  manager: "n2t"
  name: "Ibom Medical Journal (=) IBOMMJ"
  date: "2021.07.26"
  redirect: "https://ibommedicaljournal.org/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/28389:
  type: "naan"
  manager: "n2t"
  name: "Société des amis du Vieux Saint-Antonin (=) SAVSA"
  date: "2021.07.26"
  redirect: "http://bibnum.savsa.net/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/15394:
  type: "naan"
  manager: "n2t"
  name: "International Association of Research Scholars (=) IARS"
  date: "2021.07.27"
  redirect: "https://iars.info/ark:$id"
  na_policy: "NP | (:unkn) unknown | 2021 |"

ark:/99166/p9:
  type: "shoulder"
  name: "EZID CDL agents"
  date: "2010.09.01"
  how: "NP | NR, OP, CC | 2010 |"
  redirect: "https://n2t.net/ark:$id"

ark:/99999/fk4:
  type: "shoulder"
  name: "EZID expiring test"
  date: "2011.06.22"
  redirect: "https://n2t.net/ark:$id"
  how: "NP | NR, OP, CC, deleted every two weeks | 2011 |"

ark:/99166/w6:
  type: "shoulder"
  name: "SNACC (Social Networks and Archival Context Cooperative) historical persons, families, organizations"
  date: "2013.02.12"
  redirect: "303 http://socialarchive.iath.virginia.edu/ark:$id"
  how: "NP | NR, OP, CC | 2013 |"
  # note: "uses 303 redirect to code http://socialarchive.iath.virginia.edu"

ark:/99999/fk8:
  type: "shoulder"
  name: "EZID non-expiring test"
  date: "2013.07.16"
  redirect: "https://n2t.net/ark:$id"
  how: "NP | NR, OP, CC | 2013 |"

ark:/99152/h:
  type: "shoulder"
  name: "YAMZ metadata terms"
  date: "2013.07.16"
  redirect: "https://n2t.net/ark:$id"
  how: "NP | NR, OP | 2013 |"
  # note: "a non-primordinal (non-first-digit-convention-observing) shoulder"
  # note: "phantom shoulder? ark:/99152/f6 dated 2014.07.24"

ark:/12345/fk1:
  type: "shoulder"
  name: "EZID example"
  date: "2014.07.19"
  how: "NP | (:unkn) unknown | 2014 |"
  redirect: "https://n2t.net/ark:$id"

ark:/12345/fk3:
  type: "shoulder"
  name: "EZID example suffix passthrough"
  date: "2014.07.19"
  how: "NP | (:unkn) unknown | 2014 |"
  redirect: "https://n2t.net/ark:$id"

ark:/99152/p0:
  type: "shoulder"
  name: "OpenContext PeriodO time periods"
  date: "2015.01.26"
  redirect: "https://n2t.net/ark:$id"
  how: "NP | (:unkn) unknown | 2015 |"
  # note: "currently implemented as a single EZID ARK identifier,"
  #  ark:/99152/p0, registered in order to do suffix passthrough

ark:/99166/p3:
  type: "shoulder"
  name: "EZID eScholarship agents"
  date: "2017.12.13"
  how: "NP | NR, OP, CC | 2017 |"
  redirect: "https://n2t.net/ark:$id"

ark:/99999/fk3:
  type: "shoulder"
  name: "INCIPIT test"
  date: "2020.06.04"
  redirect: "https://www.hesge.ch/heg/ark:$id"
  how: "NP | (:unkn) unknown | 2020 |"

ark:/99152/t3:
  type: "shoulder"
  name: "TemaTres vocabulary"
  date: "2020.06.24"
  redirect: "https://vocabularyserver.com/ark:$id"
  how: "NP | OP | 2020 |"

ark:/99999/fq3:
  type: "shoulder"
  name: "Islandora test"
  date: "2020.07.28"
  redirect: "https://n2t.net/ark:$id"
  how: "NP | NR, OP, CC | 2020 |"

ark:/99152/b4:
  type: "shoulder"
  name: "Metadata Research Center (MRC) historical ontologies"
  date: "2020.09.21"
  redirect: "https://id.cci.drexel.edu/ark:$id"
  how: "NP | (:unkn) unknown | 2020 |"

ark:/63614/w1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "wildlifeinsights"
  name: "Wildlife Insights (Conservation International)"
  date: "2020.09.30"
  minter: "https://n2t.net/a/ezid/m/ark/63614/w1"

doi:10.31223/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-eschol"
  name: "EarthArXiv (no minter)"
  date: "2020.09.14"
  minter:
  registration_agency: "crossref"
  is_supershoulder: "true"

doi:10.31223/X5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-eschol"
  name: "EarthArXiv"
  date: "2020.09.14"
  minter: "https://n2t.net/a/ezid/m/ark/f1223/x5"
  registration_agency: "crossref"

doi:10.48330/E2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsc-lib"
  name: "UCSC eScholarship (General)"
  date: "2020.08.14"
  minter: "https://n2t.net/a/ezid/m/ark/g8330/e2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSC"
  prefix_shares_datacenter: "true"

doi:10.25496/W2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-we1s-ilab"
  name: "UCSB WhatEvery1Says Interpretation Lab"
  date: "2020.07.24"
  minter: "https://n2t.net/a/ezid/m/ark/d5496/w2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

doi:10.48321/D1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "dmptool"
  name: "CDL DMPTool"
  date: "2020.07.24"
  minter: "https://n2t.net/a/ezid/m/ark/g8321/d1"
  registration_agency: "datacite"
  datacenter: "CDL.CDL"
  prefix_shares_datacenter: "true"

doi:10.6076/D1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_lib"
  name: "UCSD Dryad"
  date: "2020.07.20"
  minter: "https://n2t.net/a/ezid/m/ark/b6076/d1"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.34948/N3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-nhr3"
  name: "UCLA Natural Hazards Risk & Resiliency Research Center"
  date: "2020.06.26"
  minter: "https://n2t.net/a/ezid/m/ark/f4948/n3"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

ark:/87924/m1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "duke_ddr"
  name: "DUL Archives & Manuscripts"
  date: "2020.06.26"
  minter: "https://n2t.net/a/ezid/m/ark/87924/m1"

doi:10.34941/S1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-esnet"
  name: "LBNL ESnet"
  date: "2020.06.04"
  minter: "https://n2t.net/a/ezid/m/ark/f4941/s1"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.34951/E2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-eschol"
  name: "UC Davis eScholarship (Supplemental Material)"
  date: "2020.05.27"
  minter: "https://n2t.net/a/ezid/m/ark/f4951/e2"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

doi:10.35012/T2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-rtg"
  name: "UCLA Research Technology Group"
  date: "2020.05.27"
  minter: "https://n2t.net/a/ezid/m/ark/f5012/t2"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

doi:10.34947/M7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsf-mhc"
  name: "UC Medical Humanities Consortium"
  date: "2020.05.19"
  minter: "https://n2t.net/a/ezid/m/ark/f4947/m7"
  registration_agency: "datacite"
  datacenter: "CDL.UCSF"
  prefix_shares_datacenter: "true"

doi:10.34950/E2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-eschol"
  name: "UC Berkeley eScholarship (Supplemental Material)"
  date: "2020.05.13"
  minter: "https://n2t.net/a/ezid/m/ark/f4950/e2"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.5070/G3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-eschol"
  name: "Electronic Green Journal"
  date: "2020.04.30"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/g3"
  registration_agency: "crossref"

ark:/19153/rcbh9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "admin-canope"
  name: "Scolomfr -- ENI Onisep"
  date: "2020.04.21"
  minter: "https://n2t.net/a/ezid/m/ark/19153/rcbh9"

doi:10.34945/F5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_odc"
  name: "Open Data Commons at UCSD FDI Lab"
  date: "2020.04.06"
  minter: "https://n2t.net/a/ezid/m/ark/f4945/f5"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/62930/a1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "unlvezid"
  name: "UNLV Library Authorities"
  date: "2020.04.06"
  minter: "https://n2t.net/a/ezid/m/ark/62930/a1"

ark:/13340/d3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_dml"
  name: "UCSD Digital Media Lab"
  date: "2020.04.03"
  minter: "https://n2t.net/a/ezid/m/ark/13340/d3"

doi:10.34946/D6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_dml"
  name: "UCSD Digital Media Lab"
  date: "2020.04.03"
  minter: "https://n2t.net/a/ezid/m/ark/f4946/d6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.34942/P2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-eng-p2sl"
  name: "UC Berkeley Project Production Systems Laboratory"
  date: "2020.03.24"
  minter: "https://n2t.net/a/ezid/m/ark/f4942/p2"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.34940/E2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cdl-eschol"
  name: "CDL eScholarship (Supplemental Material)"
  date: "2020.03.19"
  minter: "https://n2t.net/a/ezid/m/ark/f4940/e2"
  registration_agency: "datacite"
  datacenter: "CDL.CDL"
  prefix_shares_datacenter: "true"

doi:10.5070/P5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-eschol"
  name: "Parks Stewardship Forum"
  date: "2020.03.06"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/p5"
  registration_agency: "crossref"

doi:10.39999/SD2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "apitest"
  name: "API TEST"
  date: "2020.03.05"
  minter: "https://n2t.net/a/ezid/m/ark/f9999/sd2"
  registration_agency: "crossref"

doi:10.5070/SD2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_eschol"
  name: "UCSD eScholarship"
  date: "2020.03.03"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/sd2"
  registration_agency: "crossref"

doi:10.5070/R2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucr-eschol"
  name: "UC Riverside eScholarship"
  date: "2020.03.03"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/r2"
  registration_agency: "crossref"

doi:10.5070/SB2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-eschol"
  name: "UCSB eScholarship"
  date: "2020.03.03"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/sb2"
  registration_agency: "crossref"

doi:10.5070/SF2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsf-eschol"
  name: "UCSF eScholarship"
  date: "2020.03.03"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/sf2"
  registration_agency: "crossref"

doi:10.5070/M2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucm-eschol"
  name: "UC Merced eScholarship"
  date: "2020.03.03"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/m2"
  registration_agency: "crossref"

doi:10.5070/D2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-eschol"
  name: "UC Davis eScholarship"
  date: "2020.03.03"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/d2"
  registration_agency: "crossref"

ark:/81984/d3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uic"
  name: "University of Illinois Chicago Digital Collections"
  date: "2020.03.03"
  minter: "https://n2t.net/a/ezid/m/ark/81984/d3"

doi:10.5070/B2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-eschol"
  name: "UC Berkeley eScholarship"
  date: "2020.02.25"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/b2"
  registration_agency: "crossref"

doi:10.5070/RV2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-eschol"
  name: "UC Irvine eScholarship"
  date: "2020.02.25"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/rv2"
  registration_agency: "crossref"

doi:10.5070/LX2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-eschol"
  name: "UCLA eScholarship"
  date: "2020.02.25"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/lx2"
  registration_agency: "crossref"

doi:10.26085/C3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cega"
  name: "The Center for Effective Global Action"
  date: "2020.02.25"
  minter: "https://n2t.net/a/ezid/m/ark/d6085/c3"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.24432/C5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-cs"
  name: "UCI Department of Computer Science"
  date: "2020.02.11"
  minter: "https://n2t.net/a/ezid/m/ark/d4432/c5"
  registration_agency: "datacite"
  datacenter: "CDL.UCI"
  prefix_shares_datacenter: "true"

doi:10.25494/P6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-nceas"
  name: "Ocean Protection Council"
  date: "2020.02.11"
  minter: "https://n2t.net/a/ezid/m/ark/d5494/p6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

doi:10.5070/SC2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsc-eschol"
  name: "UCSC eScholarship"
  date: "2020.02.11"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/sc2"
  registration_agency: "crossref"

doi:10.25496/W6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-we1s"
  name: "UCSB WhatEvery1Says"
  date: "2020.01.17"
  minter: "https://n2t.net/a/ezid/m/ark/d5496/w6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

doi:10.5070/C2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cdl-eschol"
  name: "CDL eScholarship"
  date: "2020.01.08"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/c2"
  registration_agency: "crossref"

doi:10.25498/E4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-ebrc"
  name: "Engineering Biology Research Consortium (EBRC)"
  date: "2019.12.13"
  minter: "https://n2t.net/a/ezid/m/ark/d5498/e4"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.15310/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "ucla-eschol"
  name: "Journal of Evolution and Health (no minter)"
  date: "2019.12.12"
  minter: 
  registration_agency: "crossref"

doi:10.15310/J3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-eschol"
  name: "Journal of Evolution and Health"
  date: "2019.12.12"
  minter: "https://n2t.net/a/ezid/m/ark/c5310/j3"
  registration_agency: "crossref"

ark:/78662/s2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-essdive"
  name: "Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE)"
  date: "2019.11.22"
  minter: "https://n2t.net/a/ezid/m/ark/78662/s2"

doi:10.25497/D7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-nceas"
  name: "Dangermond Preserve"
  date: "2019.11.21"
  minter: "https://n2t.net/a/ezid/m/ark/d5497/d7"
  datacenter: "CDL.UCSB"
  registration_agency: "datacite"
  prefix_shares_datacenter: "true"

doi:10.7933/N3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-nersc"
  name: "LBNL National Energy Research Scientific Computing Center"
  date: "2019.11.01"
  minter: "https://n2t.net/a/ezid/m/ark/b7933/n3"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/23942/g3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_earthcube"
  name: "EarthCube Documents"
  date: "2019.10.29"
  minter: "https://n2t.net/a/ezid/m/ark/23942/g3"

doi:10.26081/K6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-kitptalks"
  name: "KITP"
  date: "2019.10.23"
  minter: "https://n2t.net/a/ezid/m/ark/d6081/k6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/23942/g2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_earthcube"
  name: "EarthCube Resources"
  date: "2019.10.16"
  minter: "https://n2t.net/a/ezid/m/ark/23942/g2"

doi:10.25352/G2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_earthcube"
  name: "EarthCube"
  date: "2019.10.16"
  minter: "https://n2t.net/a/ezid/m/ark/d5352/g2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.5070/D8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucr-diagonal"
  name: "Diagonal: An Ibero-American Music Review"
  date: "2019.09.17"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/d8"
  registration_agency: "crossref"

doi:10.17610/T6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla_its"
  name: "UCLA Institute of Transportation Studies"
  date: "2019.08.20"
  minter: "https://n2t.net/a/ezid/m/ark/c7610/t6"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

ark:/81235/d8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-libda"
  name: "UCI Library Digital Assets"
  date: "2019.07.01"
  minter: "https://n2t.net/a/ezid/m/ark/81235/d8"

doi:10.15145/D5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-libda"
  name: "UCI Library Digital Assets"
  date: "2019.07.01"
  minter: "https://n2t.net/a/ezid/m/ark/c5145/d5"
  registration_agency: "datacite"
  datacenter: "CDL.UCI"
  prefix_shares_datacenter: "true"

doi:10.15144/S4:
  type: "shoulder"
  manager: "ezid"
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  name: "UCLA Department of Atmospheric & Oceanic Sciences"
  date: "2019.06.28"
  minter: "https://n2t.net/a/ezid/m/ark/c5144/s4"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

ark:/88112/x2:
  type: "shoulder"
  manager: "ezid"
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  name: "National Registry of Exonerations"
  date: "2019.06.27"
  minter: "https://n2t.net/a/ezid/m/ark/88112/x2"

  #Original shoulder assigned was doi:10.21239/ on 2019.06.19
doi:10.34939/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "hearstmuseum"
  name: "Phoebe A. Hearst Museum of Anthropology"
  date: "2020.03.06"
  minter:
  registration_agency: "datacite"
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  prefix_shares_datacenter: "true"

ark:/81983/s9:
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  manager: "ezid"
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  name: "UCSF Archives & Special Collections"
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  minter: "https://n2t.net/a/ezid/m/ark/81983/s9"

doi:10.18737/D7:
  type: "shoulder"
  manager: "ezid"
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  name: "UCOP Dash"
  date: "2019.05.03"
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  registration_agency: "datacite"
  datacenter: "CDL.CDL"
  prefix_shares_datacenter: "true"

doi:10.17602/C2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cdl-generalpurpose"
  name: "CDL General Purpose"
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  minter: "https://n2t.net/a/ezid/m/ark/c7602/c2"
  registration_agency: "datacite"
  datacenter: "CDL.CDL"
  prefix_shares_datacenter: "true"

doi:10.5070/D6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-eschol"
  name: "Dotawo: A Journal of Nubian Studies"
  date: "2019.04.18"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/d6"
  registration_agency: "crossref"

ark:/88122/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "ucsf-idl"
  name: "Industry Documents Library"
  date: "2019.04.18"
  minter:

doi:10.5070/BP3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-eschol"
  name: "Berkeley Planning Journal"
  date: "2019.03.18"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/bp3"
  registration_agency: "crossref"

ark:/87293/d3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-dams-2"
  name: "UC Davis Archives and Institutional Assets Program"
  date: "2019.03.18"
  minter: "https://n2t.net/a/ezid/m/ark/87293/d3"

doi:10.5070/T2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsb-eschol"
  name: "Territories: A Trans-Cultural Journal of Regional Studies"
  date: "2019.03.18"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/t2"
  registration_agency: "crossref"

ark:/19153/spbb9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Association Française pour la Lecture"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbb9"

ark:/19153/sdbb9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- BrainPop"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbb9"

ark:/19153/spbc9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- BRNE - Myriaé"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbc9"

ark:/19153/sdbc9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Cadmos"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbc9"

ark:/19153/rcbc9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Canopé"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/rcbc9"

ark:/19153/spbd9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Canoprof"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbd9"

ark:/19153/sdbd9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Cfactuel"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbd9"

ark:/19153/sdbf9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Delagrave"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbf9"

ark:/19153/sdbg9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Didier"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbg9"

ark:/19153/sdbh9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Didier (2017)"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbh9"

ark:/19153/sdbj9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Editions Chavirô"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbj9"

ark:/19153/sdbk9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Éditions Maison des Langues"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbk9"

ark:/19153/spbf9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Edubases pour Myriaé"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbf9"

ark:/19153/sdbm9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Educagri"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbm9"

ark:/19153/sdbn9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Educ'Arte"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbn9"

ark:/19153/sdbp9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Educlever"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbp9"

ark:/19153/sdbq9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Educode"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbq9"

ark:/19153/sdbr9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- eduMedia"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbr9"

ark:/19153/sdbs9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- EduPad"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbs9"

ark:/19153/spbg9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - AFP"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbg9"

ark:/19153/spbh9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - ARTE"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbh9"

ark:/19153/spbj9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - BBC"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbj9"

ark:/19153/spbk9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - BNF"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbk9"

ark:/19153/spbm9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - BNF Partenariats"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbm9"

ark:/19153/spbn9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - BRGM"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbn9"

ark:/19153/spbp9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Centre Pompidou"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbp9"

ark:/19153/spbq9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Château de Versailles"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbq9"

ark:/19153/spbr9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Cité de l'architecture et du patrimoine"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbr9"

ark:/19153/spbs9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - CMN"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbs9"

ark:/19153/spbt9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - CNES"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbt9"

ark:/19153/spbv9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - CNRS"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbv9"

ark:/19153/spbw9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Deutsche Welle"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbw9"

ark:/19153/spbx9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - ECPAD"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbx9"

ark:/19153/spbz9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Espace Myriaé"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spbz9"

ark:/19153/spcb9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Ifremer"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcb9"

ark:/19153/spcc9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - IGN édugéo"
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  minter: "https://n2t.net/a/ezid/m/ark/19153/spcc9"

ark:/19153/spcd9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - INA GRM"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcd9"

ark:/19153/spcf9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Inserm"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcf9"

ark:/19153/spcg9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Institut du Monde arabe"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcg9"

ark:/19153/spch9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - LE BAL"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spch9"

ark:/19153/spcj9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Louvre"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcj9"

ark:/19153/spck9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Météo France"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spck9"

ark:/19153/spcm9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - MNHN"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcm9"

ark:/19153/rcbd9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Offre théâtre"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/rcbd9"

ark:/19153/spcn9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Philharmonie de Paris"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcn9"

ark:/19153/spcp9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Radio France"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcp9"

ark:/19153/spcq9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Retronews - BNF"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcq9"

ark:/19153/spcr9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - RMN HPI"
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  minter: "https://n2t.net/a/ezid/m/ark/19153/spcr9"

ark:/19153/spcs9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - RMN PA"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcs9"

ark:/19153/spct9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - RTVE"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spct9"

ark:/19153/spcv9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Eduthèque - Site.tv"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcv9"

ark:/19153/spcw9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Encyclopædia Universalis"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcw9"

ark:/19153/rcbf9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- ENI ressources"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/rcbf9"

ark:/19153/sdbt9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- e-Toiles éditions"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbt9"

ark:/19153/sdbv9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Euro-France Médias"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbv9"

ark:/19153/sdbw9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Floc Production Multimédia"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbw9"

ark:/19153/sdbx9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Foucher"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbx9"

ark:/19153/sdbz9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Foucher (2017)"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdbz9"

ark:/19153/sdcb9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Fourmikili"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcb9"

ark:/19153/sdcc9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Génération 5"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcc9"

ark:/19153/sdcd9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Hachette"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcd9"

ark:/19153/sdcf9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Hachette (2017)"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcf9"

ark:/19153/sdcg9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Hachette FLE"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcg9"

ark:/19153/sdch9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Hachette FLE (2017)"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdch9"

ark:/19153/sdcj9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Hatier"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcj9"

ark:/19153/sdck9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Hatier (2017)"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdck9"

ark:/19153/spcx9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- INS HEA"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcx9"

ark:/19153/sdcm9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- International développement système"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcm9"

ark:/19153/sdcn9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Istra"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcn9"

ark:/19153/sdcp9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Istra (2017)"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcp9"

ark:/19153/sdcq9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Itop Education"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcq9"

ark:/19153/spcz9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Jeu Numérique"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spcz9"

ark:/19153/sdcr9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Kiupe"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcr9"

ark:/19153/sdcs9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Kwyk"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcs9"

ark:/19153/sdct9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Larousse"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdct9"

ark:/19153/sdcv9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Larousse (2017)"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcv9"

ark:/19153/sdcw9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Le Kiosque de l'Education"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcw9"

ark:/19153/sdcx9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Le Web Pédagogique"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcx9"

ark:/19153/sdcz9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Learn Enjoy"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdcz9"

ark:/19153/sddb9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- L'Escapadou"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddb9"

ark:/19153/sddc9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Magistère"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddc9"

ark:/19153/sddd9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Magnard"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddd9"

ark:/19153/sddf9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- MusicAmour SAS"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddf9"

ark:/19153/spdb9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Myriaé - Espace prescripteurs académiques"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/spdb9"

ark:/19153/sddg9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Neotis"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddg9"

ark:/19153/sddh9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Pixel Cookers"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddh9"

ark:/19153/sddj9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Planet Némo Interactive"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddj9"

ark:/19153/sddk9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Plateforme pédagogiques multimédia"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddk9"

ark:/19153/sddm9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Promethean"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddm9"

ark:/19153/rcbg9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Réseau Canopé - Espace Myriaé"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/rcbg9"

ark:/19153/sddn9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Retronews-BNF"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddn9"

ark:/19153/sddp9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Seira"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddp9"

ark:/19153/sddq9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Sejer"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddq9"

ark:/19153/sddr9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Serpodile"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddr9"

ark:/19153/sdds9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- SlimCricket"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sdds9"

ark:/19153/sddt9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Teïta conseil"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddt9"

ark:/19153/sddv9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Texas Instruments"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddv9"

ark:/19153/sddw9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Tom Pouce Interactive"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddw9"

ark:/19153/sddx9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Tralalère"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddx9"

ark:/19153/sddz9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Vuilbert"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/sddz9"

ark:/19153/stst9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "canope"
  name: "Scolomfr -- Test"
  date: "2019.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/stst9"

doi:10.5070/T3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-eschol"
  name: "Teaching and Learning Anthropology"
  date: "2019.01.10"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/t3"
  registration_agency: "crossref"

doi:10.25351/V3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ryanmccart"
  name: "UCI Chemistry Dept."
  date: "2019.02.28"
  minter: "https://n2t.net/a/ezid/m/ark/d5351/v3"
  registration_agency: "datacite"
  datacenter: "CDL.UCI"
  prefix_shares_datacenter: "true"

ark:/28722/b8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucblibrary"
  name: "UC Berkeley Miscellany"
  date: "2019.02.28"
  minter: "https://n2t.net/a/ezid/m/ark/28722/b8"

doi:10.25350/B5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucblibrary"
  name: "UC Berkeley Miscellany"
  date: "2019.02.28"
  minter: "https://n2t.net/a/ezid/m/ark/d5350/b5"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.5070/V4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "eschol_harvester"
  name: "Proceedings of the Vertebrate Pest Conference"
  date: "2019.01.10"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/v4"
  registration_agency: "crossref"

ark:/19153/s9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cndp-crdp"
  name: "Formulaire Scolomfr"
  date: "2019.01.08"
  minter: "https://n2t.net/a/ezid/m/ark/19153/s9"

ark:/21549/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "hearstmuseum"
  name: "Phoebe A. Hearst Museum of Anthropology"
  date: "2019.01.04"
  minter:

doi:10.5070/R7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "eschol_harvester"
  name: "Refract"
  date: "2019.01.04"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/r7"
  registration_agency: "crossref"

doi:10.25349/D9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "dash"
  name: "UCSB Dash"
  date: "2018.12.10"
  minter: "https://n2t.net/a/ezid/m/ark/d5349/d9"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

doi:10.5070/Q2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "eschol_harvester"
  name: "The Equilibrium"
  date: "2018.11.29"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/q2"
  registration_agency: "crossref"

ark:/87296/s6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "achiii"
  name: "Dartmouth Spatial Archaeometry Lab"
  date: "2018.11.20"
  minter: "https://n2t.net/a/ezid/m/ark/87296/s6"

doi:10.25348/H8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla_dohanian"
  name: "UCLA Department of History"
  date: "2018.11.14"
  minter: "https://n2t.net/a/ezid/m/ark/d5348/h8"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

doi:10.5070/L2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-eschol"
  name: "L2 Journal"
  date: "2018.10.25"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/l2"
  registration_agency: "crossref"

ark:/85781/m7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-legacy"
  name: "UC Davis DAMS (legacy branch)"
  date: "2018.10.24"
  minter: "https://n2t.net/a/ezid/m/ark/85781/m7"

doi:10.25347/D7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-legacy"
  name: "UC Davis DAMS (legacy branch)"
  date: "2018.10.24"
  minter: "https://n2t.net/a/ezid/m/ark/d5347/d7"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

  # minter re-constructed and disabled 2019.06.20
ark:/87610/t6:
  type: "shoulder"
  active: "false"
  manager: "ezid"
  #eziduser: "uta_ica"
  name: "UTA Institute of Classical Archaeology"
  date: "2015.04.06"
  minter: "https://n2t.net/a/ezid/m/ark/87610/t6"

  # NAAN and minter replaced 2019.06.20; once mistakenly given NAAN 87610
ark:/87909/s7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-dataverse"
  name: "UCLA Library Data Science Center"
  date: "2018.10.24"
  minter: "https://n2t.net/a/ezid/m/ark/87909/s7"

doi:10.25346/S6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-dataverse"
  name: "UCLA Library Data Science Center"
  date: "2018.10.24"
  minter: "https://n2t.net/a/ezid/m/ark/d5346/s6"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

ark:/81423/d2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "tamu_ezid"
  name: "Texas A&M Univ DigProjects"
  date: "2018.10.17"
  minter: "https://n2t.net/a/ezid/m/ark/81423/d2"

ark:/81423/g1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "tamu_ezid"
  name: "Texas A&M Univ MSL"
  date: "2018.10.17"
  minter: "https://n2t.net/a/ezid/m/ark/81423/g1"

doi:10.5070/H9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-eschol"
  name: "UCSB Himalayan Linguistics"
  date: "2018.09.14"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/h9"
  registration_agency: "crossref"

ark:/80359/c9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_massive"
  name: "UCSD Center for Computational Mass Spectrometry"
  date: "2018.09.06"
  minter: "https://n2t.net/a/ezid/m/ark/80359/c9"

doi:10.25345/C5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_massive"
  name: "UCSD Center for Computational Mass Spectrometry"
  date: "2018.09.06"
  minter: "https://n2t.net/a/ezid/m/ark/d5345/c5"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.25344/S4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-gasnet"
  name: "LBNL Computational Science Department"
  date: "2018.08.29"
  minter: "https://n2t.net/a/ezid/m/ark/d5344/s4"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/81416/p4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-pece"
  name: "UCI PECE Project"
  date: "2018.07.18"
  minter: "https://n2t.net/a/ezid/m/ark/81416/p4"

doi:10.21416/P6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-pece"
  name: "UCI PECE Project"
  date: "2018.07.18"
  minter: "https://n2t.net/a/ezid/m/ark/d1416/p6"
  registration_agency: "datacite"
  datacenter: "CDL.UCI"
  prefix_shares_datacenter: "true"

ark:/13030/d3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "dcppc"
  name: "DCPPC Team Sodium"
  date: "2018.07.12"
  minter: "https://n2t.net/a/ezid/m/ark/13030/d3"

ark:/62930/w1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "unlvezid"
  name: "UNLV Libraries Web Archives"
  date: "2018.07.02"
  minter: "https://n2t.net/a/ezid/m/ark/62930/w1"

ark:/88737/t7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "duke_visiblethk"
  name: "Visible Thinking"
  date: "2018.06.29"
  minter: "https://n2t.net/a/ezid/m/ark/88737/t7"

ark:/84135/p5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-punctum"
  name: "UCSB Punctum Books"
  date: "2018.05.31"
  minter: "https://n2t.net/a/ezid/m/ark/84135/p5"

doi:10.21983/P3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-punctum"
  name: "UCSB Punctum Books"
  date: "2018.05.31"
  minter: "https://n2t.net/a/ezid/m/ark/d1983/p3"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/88736/t6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "dartthayerinsl"
  name: "Dartmouth Thayer Instructional Labs"
  date: "2018.05.01"
  minter: "https://n2t.net/a/ezid/m/ark/88736/t6"

ark:/81428/v8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "dartvbasilica"
  name: "Dartmouth Virtual Basilica"
  date: "2018.05.01"
  minter: "https://n2t.net/a/ezid/m/ark/81428/v8"

ark:/87287/d7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-qjhart"
  name: "UCD Online Strategies"
  date: "2018.04.14"
  minter: "https://n2t.net/a/ezid/m/ark/87287/d7"

doi:10.18439/S9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-qjhart"
  name: "UCD Online Strategies"
  date: "2018.04.14"
  minter: "https://n2t.net/a/ezid/m/ark/c8439/s9"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

ark:/21198/n1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-library"
  name: "DLP"
  date: "2018.04.11"
  minter: "https://n2t.net/a/ezid/m/ark/21198/n1"

ark:/51986/b6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-btusadmin"
  name: "LBNL BTUSAdmin"
  date: "2018.04.11"
  minter: "https://n2t.net/a/ezid/m/ark/51986/b6"

doi:10.20357/B7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-btusadmin"
  name: "LBNL BTUSAdmin"
  date: "2018.04.11"
  minter: "https://n2t.net/a/ezid/m/ark/d0357/b7"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.21221/S2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_scholcomm"
  name: "UCSD Library Scholarly Comm"
  date: "2018.03.16"
  minter: "https://n2t.net/a/ezid/m/ark/d1221/s2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.5070/B8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-eschol"
  name: "Berkeley Review of Education"
  date: "2018.03.14"
  minter:
  registration_agency: "crossref"

doi:10.25342/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "lbnl-cascade"
  name: "LBNL Cascade"
  date: "2018.02.22"
  minter:
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/62930/d1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "unlvezid"
  name: "UNLV Library Digital Objects"
  date: "2017.08.23"
  minter: "https://n2t.net/a/ezid/m/ark/62930/d1"

ark:/87292/w9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "iastate_lib"
  name: "Iowa State University"
  date: "2018.02.07"
  minter: "https://n2t.net/a/ezid/m/ark/87292/w9"

ark:/86074/z4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-zapwld"
  name: "UCSB Zapruder World"
  date: "2017.11.29"
  minter: "https://n2t.net/a/ezid/m/ark/86074/z4"

doi:10.21431/Z3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-zapwld"
  name: "UCSB Zapruder World"
  date: "2017.11.29"
  minter: "https://n2t.net/a/ezid/m/ark/d1431/z3"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

doi:10.6074/D4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "eschol_harvester"
  name: "eschol DataCite"
  date: "2017.11.27"
  minter: "https://n2t.net/a/ezid/m/ark/b6074/d4"
  registration_agency: "datacite"
  datacenter: "CDL.CDL"
  prefix_shares_datacenter: "true"

ark:/86071/d2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucmlibrary"
  name: "UCM Library Digital Assets"
  date: "2017.11.14"
  minter: "https://n2t.net/a/ezid/m/ark/86071/d2"

ark:/86073/b3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "aublib"
  name: "American University of Beirut"
  date: "2017.10.20"
  minter: "https://n2t.net/a/ezid/m/ark/86073/b3"

ark:/81973/s3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "scirweb"
  name: "UC NRS Santa Cruz Island Reserve"
  date: "2017.09.26"
  minter: "https://n2t.net/a/ezid/m/ark/81973/s3"

doi:10.21973/S3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "scirweb"
  name: "UC NRS Santa Cruz Island Reserve"
  date: "2017.09.26"
  minter: "https://n2t.net/a/ezid/m/ark/d1973/s3"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

doi:10.17916/P6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucpress"
  name: "UC Press"
  date: "2017.09.15"
  minter: "https://n2t.net/a/ezid/m/ark/c7916/p6"
  registration_agency: "datacite"
  datacenter: "CDL.CDL"
  prefix_shares_datacenter: "true"

ark:/87936/g6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "doiwustl"
  name: "WUSTL GIS"
  date: "2017.08.24"
  minter: "https://n2t.net/a/ezid/m/ark/87936/g6"

ark:/62930/f1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "unlvezid"
  name: "UNLV Library Finding Aids"
  date: "2017.08.23"
  minter: "https://n2t.net/a/ezid/m/ark/62930/f1"

doi:10.18119/N9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_ndex"
  name: "UCSD NDEx"
  date: "2017.08.22"
  minter: "https://n2t.net/a/ezid/m/ark/c8119/n9"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/81423/b1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "tamu_ezid"
  name: "Texas A&M Univ Batt"
  date: "2017.08.08"
  minter: "https://n2t.net/a/ezid/m/ark/81423/b1"

doi:10.25338/B8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-library"
  name: "UC Davis Bio Agr Eng Dash"
  date: "2017.07.24"
  minter: "https://n2t.net/a/ezid/m/ark/d5338/b8"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

ark:/85335/m5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "msulib"
  name: "MSU Libraries"
  date: "2017.06.15"
  minter: "https://n2t.net/a/ezid/m/ark/85335/m5"

doi:10.21990/R2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-peisert"
  name: "LBNL CRD"
  date: "2017.06.08"
  minter: "https://n2t.net/a/ezid/m/ark/d1990/r2"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/86084/b4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "blavatnik"
  name: "Blavatnik Archive"
  date: "2017.05.23"
  minter: "https://n2t.net/a/ezid/m/ark/86084/b4"

doi:10.21990/B9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-mwylie"
  name: "LBNL ACDO NERSC"
  date: "2017.05.01"
  minter: "https://n2t.net/a/ezid/m/ark/d1990/b9"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.21990/C2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-mwylie"
  name: "LBNL ACDO CRD"
  date: "2017.05.01"
  minter: "https://n2t.net/a/ezid/m/ark/d1990/c2"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.21990/S9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-mwylie"
  name: "LBNL ACDO ESnet"
  date: "2017.05.01"
  minter: "https://n2t.net/a/ezid/m/ark/d1990/s9"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/81222/c2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla_uclageo"
  name: "UCLA_CEEGEO"
  date: "2017.04.11"
  minter: "https://n2t.net/a/ezid/m/ark/81222/c2"

doi:10.21222/C2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla_uclageo"
  name: "UCLA_CEEGEO"
  date: "2017.04.11"
  minter: "https://n2t.net/a/ezid/m/ark/d1222/c2"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

ark:/62930/v3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "unlvezid"
  name: "UNLV Library"
  date: "2017.03.30"
  minter: "https://n2t.net/a/ezid/m/ark/62930/v3"

ark:/62930/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "unlvezid"
  name: "UNLV Library No Minter"
  date: "2017.03.30"
  minter:

ark:/81986/s6.caida:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_caida"
  name: "SDSC CAIDA Minter"
  date: "2017.06.15"
  minter: "https://n2t.net/a/ezid/m/ark/81986/s6.caida"

ark:/81986/caida:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_caida"
  name: "SDSC CAIDA"
  date: "2017.06.15"
  minter:

doi:10.21986/CAIDA:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_caida"
  name: "SDSC CAIDA"
  date: "2017.06.05"
  minter:
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.21986/S6.CAIDA:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_caida"
  name: "SDSC CAIDA Minter"
  date: "2017.06.05"
  minter: "https://n2t.net/a/ezid/m/ark/d1986/s6.caida"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/81985/n2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "nu-lib"
  name: "NorthwesternUniv"
  date: "2017.03.11"
  minter: "https://n2t.net/a/ezid/m/ark/81985/n2"

ark:/28722/s7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-gis"
  name: "UCB Library Systems Office"
  date: "2017.02.28"
  minter: "https://n2t.net/a/ezid/m/ark/28722/s7"

ark:/81984/c8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uic"
  name: "University of Illinois at Chicago"
  date: "2017.02.09"
  minter: "https://n2t.net/a/ezid/m/ark/81984/c8"

doi:10.21980/J8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-jetem"
  name: "UCI JETem"
  date: "2017.01.20"
  minter: "https://n2t.net/a/ezid/m/ark/d1980/j8"
  registration_agency: "datacite"
  datacenter: "CDL.UCI"
  prefix_shares_datacenter: "true"

doi:10.21978/P8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-pds"
  name: "Planetary Data System"
  date: "2017.01.04"
  minter: "https://n2t.net/a/ezid/m/ark/d1978/p8"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

doi:10.21977/D9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci-jlta"
  name: "UCI School of Education"
  date: "2016.12.14"
  minter: "https://n2t.net/a/ezid/m/ark/d1977/d9"
  registration_agency: "crossref"

ark:/81976/p7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_talley"
  name: "UCSD Scripps CASPO"
  date: "2016.12.09"
  minter: "https://n2t.net/a/ezid/m/ark/81976/p7"

doi:10.21976/C6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_talley"
  name: "UCSD Scripps CASPO"
  date: "2016.12.09"
  minter: "https://n2t.net/a/ezid/m/ark/d1976/c6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.21975/H5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_dalden"
  name: "UCSD Hydraulics Laboratory"
  date: "2016.12.01"
  minter: "https://n2t.net/a/ezid/m/ark/d1975/h5"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/81973/r7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "nrsinfomgr"
  name: "UC Natural Reserve System"
  date: "2016.11.15"
  minter: "https://n2t.net/a/ezid/m/ark/81973/r7"

doi:10.21973/N3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "nrsinfomgr"
  name: "UC Natural Reserve System"
  date: "2016.11.15"
  minter: "https://n2t.net/a/ezid/m/ark/d1973/n3"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

ark:/81972/g7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-ayliu"
  name: "UCSB English Department"
  date: "2016.10.25"
  minter: "https://n2t.net/a/ezid/m/ark/81972/g7"

doi:10.21972/G2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-ayliu"
  name: "UCSB English Department"
  date: "2016.10.25"
  minter: "https://n2t.net/a/ezid/m/ark/d1972/g2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/48907/b7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-bren"
  name: "UCSB"
  date: "2016.10.19"
  minter: "https://n2t.net/a/ezid/m/ark/48907/b7"

ark:/81968/g6:
  type: "shoulder"
  active: "false"
  manager: "ezid"
  #eziduser: "uwisc_mdsilber"
  name: "UWisc German Program (Retired Minter)"
  date: "2016.10.10"
  minter: "https://n2t.net/a/ezid/m/ark/81968/g6"

  # EZID account put into maintenance mode 2019.06.05; minter intact
ark:/67034/k4:
  type: "shoulder"
  active: "false"
  manager: "ezid"
  #eziduser: "kgrid"
  date:   "2016.09.22"
  name:   "UMichigan Medical School DLHS-DLKS"
  minter: "https://n2t.net/a/ezid/m/ark/67034/k4"

doi:10.21433/B3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucblibrary"
  name: "International Conference on GIScience Short Paper Proceedings"
  date: "2016.09.16"
  minter: "https://n2t.net/a/ezid/m/ark/d1433/b3"
  registration_agency: "crossref"

ark:/81431/p3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "upennlib"
  name: "University of Pennsylvania Libraries"
  date: "2016.09.15"
  minter: "https://n2t.net/a/ezid/m/ark/81431/p3"

doi:10.21426/B6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucm_mndawson"
  name: "UCM Biogeographia"
  date: "2016.08.24"
  minter: "https://n2t.net/a/ezid/m/ark/d1426/b6"
  registration_agency: "crossref"

doi:10.21425/F5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucm_mndawson"
  name: "UCM Frontiers of Biogeography"
  date: "2016.08.24"
  minter: "https://n2t.net/a/ezid/m/ark/d1425/f5"
  registration_agency: "crossref"

ark:/81424/r2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-eri"
  name: "UCSB Earth Research Institute"
  date: "2016.08.24"
  minter: "https://n2t.net/a/ezid/m/ark/81424/r2"

doi:10.21424/R4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-eri"
  name: "UCSB Earth Research Institute"
  date: "2016.08.24"
  minter: "https://n2t.net/a/ezid/m/ark/d1424/r4"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/81423/m3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "tamu_ezid"
  name: "Texas A&M Univ Libr"
  date: "2016.08.22"
  minter: "https://n2t.net/a/ezid/m/ark/81423/m3"

ark:/81422/d4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_ida"
  name: "UCSD Scripps ProjectIDA"
  date: "2016.08.10"
  minter: "https://n2t.net/a/ezid/m/ark/81422/d4"

doi:10.21422/D2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_ida"
  name: "UCSD Scripps ProjectIDA"
  date: "2016.08.10"
  minter: "https://n2t.net/a/ezid/m/ark/d1422/d2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/44461/r4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "dartremix"
  name: "Dartmouth Remix the Manuscript"
  date: "2016.08.06"
  minter: "https://n2t.net/a/ezid/m/ark/44461/r4"

ark:/81418/g4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-geotech"
  name: "UCB Geotechnical Engineering Research"
  date: "2016.07.09"
  minter: "https://n2t.net/a/ezid/m/ark/81418/g4"

doi:10.21418/G8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-geotech"
  name: "UCB Geotechnical Engineering Research"
  date: "2016.07.09"
  minter: "https://n2t.net/a/ezid/m/ark/d1418/g8"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/81239/m9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "invemardoi"
  name: "Marine and Coastal Research Institute of Columbia"
  date: "2016.06.14"
  minter: "https://n2t.net/a/ezid/m/ark/81239/m9"

doi:10.21239/V9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "invemardoi"
  name: "Marine and Coastal Research Institute of Columbia"
  date: "2016.06.14"
  minter: "https://n2t.net/a/ezid/m/ark/d1239/v9"
  registration_agency: "datacite"
  datacenter: "CDL.CDL"

ark:/81238/s3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_spray"
  name: "UCSD Scripps Spray Plotting"
  date: "2016.06.07"
  minter: "https://n2t.net/a/ezid/m/ark/81238/s3"

doi:10.21238/S8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_spray"
  name: "UCSD Scripps Spray Plotting"
  date: "2016.06.07"
  minter: "https://n2t.net/a/ezid/m/ark/d1238/s8"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.21237/C7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucr-jclio"
  name: "Cliodynamics Journal"
  date: "2016.05.31"
  minter: "https://n2t.net/a/ezid/m/ark/d1237/c7"
  registration_agency: "crossref"

ark:/81229/m2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-mostofi"
  name: "UCSB ECE Dept Mostofi Lab"
  date: "2016.05.18"
  minter: "https://n2t.net/a/ezid/m/ark/81229/m2"

doi:10.21229/M9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-mostofi"
  name: "UCSB ECE Dept Mostofi Lab"
  date: "2016.05.18"
  minter: "https://n2t.net/a/ezid/m/ark/d1229/m9"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/81228/w2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_mwb"
  name: "UCSD Metabolomics Workbench"
  date: "2016.05.16"
  minter: "https://n2t.net/a/ezid/m/ark/81228/w2"

doi:10.21228/M8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_mwb"
  name: "UCSD Metabolomics Workbench"
  date: "2016.05.16"
  minter: "https://n2t.net/a/ezid/m/ark/d1228/m8"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/88435/pr1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "pudiglib"
  name: "Princeton University Open Access Repository"
  date: "2016.05.17"
  minter: "https://n2t.net/a/ezid/m/ark/88435/pr1"

ark:/81224/h2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_grush"
  name: "UC San Diego Philosophy Dept"
  date: "2016.05.06"
  minter: "https://n2t.net/a/ezid/m/ark/81224/h2"

doi:10.21224/P4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_grush"
  name: "UC San Diego Philosophy Dept"
  date: "2016.05.06"
  minter: "https://n2t.net/a/ezid/m/ark/d1224/p4"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/81220/w2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "wmlibdigi"
  name: "College of William & Mary Libraries"
  date: "2016.04.07"
  minter: "https://n2t.net/a/ezid/m/ark/81220/w2"

ark:/80358/s5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-cesd"
  name: "LBNL CESD"
  date: "2016.03.30"
  minter: "https://n2t.net/a/ezid/m/ark/80358/s5"

doi:10.20358/C8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-cesd"
  name: "LBNL CESD"
  date: "2016.03.30"
  minter: "https://n2t.net/a/ezid/m/ark/d0358/c8"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/80354/b3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-bls"
  name: "Berkeley Linguistics Society"
  date: "2016.03.18"
  minter: "https://n2t.net/a/ezid/m/ark/80354/b3"

doi:10.20354/B4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-bls"
  name: "Berkeley Linguistics Society"
  date: "2016.03.18"
  minter: "https://n2t.net/a/ezid/m/ark/d0354/b4"
  registration_agency: "crossref"

ark:/80353/k5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucolick"
  name: "UC Observatories"
  date: "2016.03.16"
  minter: "https://n2t.net/a/ezid/m/ark/80353/k5"

doi:10.20353/K3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucolick"
  name: "UC Observatories"
  date: "2016.03.16"
  minter: "https://n2t.net/a/ezid/m/ark/d0353/k3"
  registration_agency: "datacite"
  datacenter: "CDL.UCSC"
  prefix_shares_datacenter: "true"

ark:/80352/c5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla_ngl"
  name: "UCLA Civil and Environmental Engineering"
  date: "2016.03.11"
  minter: "https://n2t.net/a/ezid/m/ark/80352/c5"

doi:10.20352/C2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla_ngl"
  name: "UCLA Civil and Environmental Engineering"
  date: "2016.03.11"
  minter: "https://n2t.net/a/ezid/m/ark/d0352/c2"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

doi:10.18739/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "sb-nceas"
  name: "NSF Arctic Data Center"
  date: "2016.03.07"
  minter:
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

doi:10.18739/A2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-nceas"
  name: "NSF Arctic Data Center Minter"
  date: "2016.03.07"
  minter: "https://n2t.net/a/ezid/m/ark/c8739/a2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/28722/h2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucberkeley"
  name: "UC Berkeley Library - HathiTrust/UCB"
  date: "2016.02.10"
  minter: "https://n2t.net/a/ezid/m/ark/28722/h2"

doi:10.6071/Z7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucmlibrary"
  name: "UCM SSCZO"
  date: "2016.02.08"
  minter: "https://n2t.net/a/ezid/m/ark/b6071/z7"
  registration_agency: "datacite"
  datacenter: "CDL.UCM"
  prefix_shares_datacenter: "true"

ark:/57799/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "biocaddie"
  name: "bioCADDIE no minter"
  date: "2016.01.20"
  minter:

ark:/57799/b9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "biocaddie"
  name: "bioCADDIE"
  date: "2016.01.20"
  minter: "https://n2t.net/a/ezid/m/ark/57799/b9"

ark:/88734/p3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-jcap"
  name: "LBNL JCAP/CSD"
  date: "2016.01.19"
  minter: "https://n2t.net/a/ezid/m/ark/88734/p3"

doi:10.18734/P4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-jcap"
  name: "LBNL JCAP/CSD"
  date: "2016.01.19"
  minter: "https://n2t.net/a/ezid/m/ark/c8734/p4"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.6086/D1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucrlibrary"
  name: "UC Riverside DASH"
  date: "2015.12.09"
  minter: "https://n2t.net/a/ezid/m/ark/b6086/d1"
  registration_agency: "datacite"
  datacenter: "CDL.UCR"
  prefix_shares_datacenter: "true"

  # Coastal Data Information Program
ark:/88437/c3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_cdip"
  name: "UCSD CDIP"
  date: "2015.12.09"
  minter: "https://n2t.net/a/ezid/m/ark/88437/c3"

doi:10.18437/C7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_cdip"
  name: "UCSD CDIP"
  date: "2015.12.09"
  minter: "https://n2t.net/a/ezid/m/ark/c8437/c7"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

  # Southern California Ocean Observing System
ark:/88436/s3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_sccoos"
  name: "UCSD SCCOOS"
  date: "2015.12.09"
  minter: "https://n2t.net/a/ezid/m/ark/88436/s3"

doi:10.18436/S6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_sccoos"
  name: "UCSD SCCOOS"
  date: "2015.12.09"
  minter: "https://n2t.net/a/ezid/m/ark/c8436/s6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/88431/b4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-eaei"
  name: "LBNL EAEI"
  date: "2015.12.05"
  minter: "https://n2t.net/a/ezid/m/ark/88431/b4"

doi:10.18431/B3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-eaei"
  name: "LBNL EAEI"
  date: "2015.12.05"
  minter: "https://n2t.net/a/ezid/m/ark/c8431/b3"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/88119/f7:
  type: "shoulder"
  active: "false"
  manager: "ezid"
  #eziduser: "facebase"
  name: "Facebase Consortium"
  date: "2015.09.08"
  minter: "https://n2t.net/a/ezid/m/ark/88119/f7"

ark:/88118/p7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uc-geer"
  name: "Geotechnical Extreme Events Reconnaissance"
  date: "2015.08.28"
  minter: "https://n2t.net/a/ezid/m/ark/88118/p7"

doi:10.18118/G6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uc-geer"
  name: "Geotechnical Extreme Events Reconnaissance"
  date: "2015.08.28"
  minter: "https://n2t.net/a/ezid/m/ark/c8118/g6"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/88115/d6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-lucklab"
  name: "Laboratory for Basic and Translational Cognitive Neuroscience"
  date: "2015.08.13"
  minter: "https://n2t.net/a/ezid/m/ark/88115/d6"

doi:10.18115/D5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-lucklab"
  name: "Laboratory for Basic and Translational Cognitive Neuroscience"
  date: "2015.08.13"
  minter: "https://n2t.net/a/ezid/m/ark/c8115/d5"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

ark:/87915/n7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-cns"
  name: "Center for Nanotechnology in Society"
  date: "2015.06.26"
  minter: "https://n2t.net/a/ezid/m/ark/87915/n7"

doi:10.17915/N5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-cns"
  name: "Center for Nanotechnology in Society"
  date: "2015.06.26"
  minter: "https://n2t.net/a/ezid/m/ark/c7915/n5"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/87936/b7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "wustl_cbi"
  name: "WUSTL Center for Biomedical Informatics"
  date: "2015.05.13"
  minter: "https://n2t.net/a/ezid/m/ark/87936/b7"

ark:/87908/b9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_dbmicloud"
  name: "UC San Diego Department of Biomedical Informatics"
  date: "2015.05.11"
  minter: "https://n2t.net/a/ezid/m/ark/87908/b9"

doi:10.17908/B8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_dbmicloud"
  name: "UC San Diego Department of Biomedical Informatics"
  date: "2015.05.11"
  minter: "https://n2t.net/a/ezid/m/ark/c7908/b8"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/13030/p8:
  # Minter recreated due to re-seeding error uncovered during Amazon migration
  # of 2015.03.13; replaces retired minter 13030/p4
  # Internal escholarship arks for Grouped OA Publication Records.
  # Should be no refs found in the wild.
  type: "shoulder"
  manager: "ezid"
  #eziduser: "eschol_harvester"
  name: "Open Access Policy"
  date: "2015.04.06"
  minter: "https://n2t.net/a/ezid/m/ark/13030/p8"

ark:/87924/r4:
  # Minter recreated due to re-seeding error uncovered during Amazon migration
  # of 2015.03.13; replaces retired minter 87924/r3
  type: "shoulder"
  manager: "ezid"
  #eziduser: "duke_ddr"
  name: "Duke Digital Repository"
  date: "2015.04.06"
  minter: "https://n2t.net/a/ezid/m/ark/87924/r4"

ark:/87607/c7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ccc"
  name: "Chicago Collections Consortium"
  date: "2015.04.01"
  minter: "https://n2t.net/a/ezid/m/ark/87607/c7"

ark:/65665/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "nmnh_ris"
  name: "National Museum of Natural History, Smithsonian Institution - empty shoulder"
  date: "2015.03.31"
  minter:

ark:/87602/m4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "duke_morpho"
  name: "Morphosource Project"
  date: "2015.03.26"
  minter: "https://n2t.net/a/ezid/m/ark/87602/m4"

ark:/19153/p4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cndp-crdp"
  name: "Parcours EGO-PAC"
  date: "2015.03.16"
  minter: "https://n2t.net/a/ezid/m/ark/19153/p4"

ark:/75788/m4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "mtstate"
  name: "Montana State University"
  date: "2015.03.04"
  minter: "https://n2t.net/a/ezid/m/ark/75788/m4"

ark:/85782/d8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_d3r"
  name: "Drug Design Data (D3R) Resource"
  date: "2015.02.18"
  minter: "https://n2t.net/a/ezid/m/ark/85782/d8"

doi:10.15782/D6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_d3r"
  name: "Drug Design Data (D3R) Resource"
  date: "2015.02.18"
  minter: "https://n2t.net/a/ezid/m/ark/c5782/d6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/85788/g4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-chg"
  name: "UCSB Climate Hazards Group, Dept of Geography"
  date: "2015.02.11"
  minter: "https://n2t.net/a/ezid/m/ark/85788/g4"

doi:10.15780/G2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-chg"
  name: "UCSB Climate Hazards Group, Dept of Geography"
  date: "2015.02.11"
  minter: "https://n2t.net/a/ezid/m/ark/c5780/g2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/85779/j4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-lawlib"
  name: "Berkeley Law Library"
  date: "2015.02.07"
  minter: "https://n2t.net/a/ezid/m/ark/85779/j4"

doi:10.15779/Z38:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-lawlib"
  name: "Berkeley Law School Journals"
  date: "2015.03.04"
  minter: "https://n2t.net/a/ezid/m/ark/c5779/z38"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.15779/J2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-lawlib"
  name: "Berkeley Law Library"
  date: "2015.02.07"
  minter: "https://n2t.net/a/ezid/m/ark/c5779/j2"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/10945/t4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "teachpitch"
  name: "TeachPitch"
  date: "2015.01.21"
  minter: "https://n2t.net/a/ezid/m/ark/10945/t4"

doi:10.5070/P2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "eschol_harvester"
  name: "eScholarship: California Jrnl of Politics and Policy"
  date: "2014.01.14"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/p2"
  registration_agency: "crossref"

ark:/83024/d4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "dartmouthc"
  name: "Dartmouth College Library"
  date: "2014.12.19"
  minter: "https://n2t.net/a/ezid/m/ark/83024/d4"

doi:10.7291/D1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsc-lib"
  name: "UCSC Dash"
  date: "2014.12.08"
  minter: "https://n2t.net/a/ezid/m/ark/b7291/d1"
  registration_agency: "datacite"
  datacenter: "CDL.UCSC"
  prefix_shares_datacenter: "true"

doi:10.7941/D1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-lib"
  name: "LBNL Dash"
  date: "2014.12.08"
  minter: "https://n2t.net/a/ezid/m/ark/b7941/d1"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.5070/S8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "eschol_harvester"
  name: "eScholarship"
  date: "2014.12.08"
  minter: "https://n2t.net/a/ezid/m/ark/b5070/s8"
  registration_agency: "crossref"

ark:/87924/r3:
  type: "shoulder"
  active: "false"
  manager: "oca"
  # Retired from ezid
  #eziduser: "none"
  name: "Duke Digital Repository (Retired Minter)"
  date: "2014.11.19"
  minter: "https://n2t.net/a/ezid/m/ark/87924/r3"

ark:/83022/m4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_datamares"
  name: "DataMares"
  date: "2014.11.10"
  minter: "https://n2t.net/a/ezid/m/ark/83022/m4"

doi:10.13022/M3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_datamares"
  name: "DataMares"
  date: "2014.11.10"
  minter: "https://n2t.net/a/ezid/m/ark/c3022/m3"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/88114/p7:
  type: "shoulder"
  active: "false"
  manager: "ezid"
  #eziduser: "purduepoly"
  name: "Purdue Polytechnic Institute (Retired Minter)"
  date: "2014.10.14"
  minter: "https://n2t.net/a/ezid/m/ark/88114/p7"

ark:/85147/j4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_idashrepository"
  name: "iDASH Repository"
  date: "2014.10.13"
  minter: "https://n2t.net/a/ezid/m/ark/85147/j4"

doi:10.15147/J2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_idashrepository"
  name: "iDASH Repository"
  date: "2014.10.13"
  minter: "https://n2t.net/a/ezid/m/ark/c5147/j2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.6071/M3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucmlibrary"
  name: "UCM Dash"
  date: "2014.09.16"
  minter: "https://n2t.net/a/ezid/m/ark/b6071/m3"
  registration_agency: "datacite"
  datacenter: "CDL.UCM"
  prefix_shares_datacenter: "true"

ark:/13030/p4:
  type: "shoulder"
  active: "false"
  manager: "oca"
  #eziduser: "none"
  name: "Open Access Policy (Retired Minter)"
  date: "2014.09.04"
  minter: "https://n2t.net/a/ezid/m/ark/13030/p4"

ark:/65665/n6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "nmnh_rcis"
  name: "National Museum of Natural History, Smithsonian Institution"
  date: "2014.08.18"
  minter: "https://n2t.net/a/ezid/m/ark/65665/n6"

ark:/85142/t4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "usulibrary"
  name: "Utah State University Merrill-Cazier Library"
  date: "2014.07.23"
  minter: "https://n2t.net/a/ezid/m/ark/85142/t4"

ark:/85141/s6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-ssds"
  name: "UC Davis, Social Science Data Service"
  date: "2014.07.23"
  minter: "https://n2t.net/a/ezid/m/ark/85141/s6"

doi:10.15141/S5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-ssds"
  name: "UC Davis, Social Science Data Service"
  date: "2014.07.23"
  minter: "https://n2t.net/a/ezid/m/ark/c5141/s5"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

ark:/85140/d4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-library"
  name: "University of California, Davis, University Library"
  date: "2014.07.23"
  minter: "https://n2t.net/a/ezid/m/ark/85140/d4"

doi:10.15140/D3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucd-library"
  name: "University of California, Davis, University Library"
  date: "2014.07.23"
  minter: "https://n2t.net/a/ezid/m/ark/c5140/d3"
  registration_agency: "datacite"
  datacenter: "CDL.UCD"
  prefix_shares_datacenter: "true"

doi:10.6078/D1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucberkeley"
  name: "UCB Dash"
  date: "2014.07.17"
  minter: "https://n2t.net/a/ezid/m/ark/b6078/d1"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.7280/D1:
  type: "shoulder"
  manager: "ezid"
  #eziduser:uci
  name: "UCI Dash"
  date: "2014.07.17"
  minter: "https://n2t.net/a/ezid/m/ark/b7280/d1"
  registration_agency: "datacite"
  datacenter: "CDL.UCI"
  prefix_shares_datacenter: "true"

ark:/88435/dsp01:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "pudiglib"
  name: "Princeton University Library"
  date: "2014.06.20"
  minter: "https://n2t.net/a/ezid/m/ark/88435/dsp01"

ark:/88435/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "pudiglib"
  name: "PUL Digital Collections"
  date: "2014.06.20"
  minter: "https://n2t.net/a/ezid/m/ark/88435/dc"

ark:/87943/t4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-openmsi"
  name: "LBNL OpenMSI"
  date: "2014.06.12"
  minter: "https://n2t.net/a/ezid/m/ark/87943/t4"

doi:10.7943/T3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-openmsi"
  name: "LBNL OpenMSI"
  date: "2014.06.12"
  minter: "https://n2t.net/a/ezid/m/ark/b7943/t3"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.5068/D1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-library"
  name: "UCLA Dash"
  date: "2014.06.05"
  minter: "https://n2t.net/a/ezid/m/ark/b5068/d1"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

ark:/12345/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "admin"
  name: "Examples Shoulder"
  date: "2014.05.27"
  minter: "https://n2t.net/a/ezid/m/ark/12345/fk8"

ark:/87942/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_cchdo"
  name: "CLIVAR & Carbon Hydrographic Data Office"
  date: "2014.05.21"
  minter:

doi:10.7942/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "ucsd_cchdo"
  name: "CLIVAR & Carbon Hydrographic Data Office"
  date: "2014.05.21"
  minter:
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.7942/C2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_cchdo"
  name: "CLIVAR & CCHDO Minter"
  date: "2014.05.21"
  minter: "https://n2t.net/a/ezid/m/ark/b7942/c2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/87941/t2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-lib"
  name: "Lawrence Berkeley National Laboratory"
  date: "2014.05.09"
  minter: "https://n2t.net/a/ezid/m/ark/87941/t2"

doi:10.7941/S9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "lbnl-lib"
  name: "Lawrence Berkeley National Laboratory"
  date: "2014.05.09"
  minter: "https://n2t.net/a/ezid/m/ark/b7941/s9"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/87940/m4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-writ"
  name: "UCSB Writing Program"
  date: "2014.04.16"
  minter: "https://n2t.net/a/ezid/m/ark/87940/m4"

doi:10.7940/M3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-writ"
  name: "UCSB Writing Program"
  date: "2014.04.16"
  minter: "https://n2t.net/a/ezid/m/ark/b7940/m3"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/87936/k8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "doiwustl"
  name: "Washington University in St. Louis"
  date: "2014.03.18"
  minter: "https://n2t.net/a/ezid/m/ark/87936/k8"

ark:/87932/k0:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-bsl"
  name: "Berkeley Seismological Laboratory"
  date: "2014.02.13"
  minter: "https://n2t.net/a/ezid/m/ark/87932/k0"

doi:10.7932/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-bsl"
  name: "Berkeley Seismological Laboratory"
  date: "2014.02.13"
  minter:
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/87928/h7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb_ist_rit"
  name: "UC Berkeley Research IT"
  date: "2013.11.05"
  minter: "https://n2t.net/a/ezid/m/ark/87928/h7"

doi:10.7928/H6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb_ist_rit"
  name: "UC Berkeley Research IT"
  date: "2013.11.05"
  minter: "https://n2t.net/a/ezid/m/ark/b7928/h6"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/87925/:
  type: "shoulder"
  is_supershoulder: "true"
  manager: "ezid"
  #eziduser: "ucdlibrary"
  name: "University College Dublin"
  date: "2013.10.18"
  minter:

ark:/87925/h1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucdlibrary"
  name: "University College Dublin Minter"
  date: "2013.10.18"
  minter: "https://n2t.net/a/ezid/m/ark/87925/h1"

ark:/87924/g9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "duke_lib"
  name: "Duke University"
  date: "2013.10.14"
  minter: "https://n2t.net/a/ezid/m/ark/87924/g9"

ark:/21198/z1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-library"
  name: "UCLA Digital Library"
  date: "2013.10.02"
  minter: "https://n2t.net/a/ezid/m/ark/21198/z1"

ark:/87922/g3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-its"
  name: "UC Berkeley Institute of Transportation Studies (ITS)"
  date: "2013.09.30"
  minter: "https://n2t.net/a/ezid/m/ark/87922/g3"

doi:10.7922/G2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-its"
  name: "UC Berkeley Institute of Transportation Studies (ITS)"
  date: "2013.09.30"
  minter: "https://n2t.net/a/ezid/m/ark/b7922/g2"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/87919/f5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-mirage_agl"
  name: "UCSB Advanced Graphics Lab"
  date: "2013.09.01"
  minter: "https://n2t.net/a/ezid/m/ark/87919/f5"

doi:10.7919/F4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-mirage_agl"
  name: "UCSB Advanced Graphics Lab"
  date: "2013.09.01"
  minter: "https://n2t.net/a/ezid/m/ark/b7919/f4"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

doi:10.5063/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-nceas"
  name: "National Center for Ecological Analysis and Synthesis (NCEAS)"
  date: "2013.08.29"
  minter: "https://n2t.net/a/ezid/m/ark/b5063/f1"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/87300/x9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_onelab"
  name: "UCSD OneLab"
  date: "2013.04.01"
  minter: "https://n2t.net/a/ezid/m/ark/87300/x9"

doi:10.7300/X8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_onelab"
  name: "UCSD OneLab"
  date: "2013.04.01"
  minter: "https://n2t.net/a/ezid/m/ark/b7300/x8"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/87302/z3:
  type: "shoulder"
  active: "false"
  manager: "ezid"
  #eziduser: "umich"
  name: "University of Michigan Library (Retired Minter)"
  date: "2013.04.01"
  minter: "https://n2t.net/a/ezid/m/ark/87302/z3"

doi:10.7299/X7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-mvz"
  name: "UC Berkeley Museum of Vertebrate Zoology"
  date: "2013.03.25"
  minter: "https://n2t.net/a/ezid/m/ark/b7299/x7"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/21547/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-bcid"
  name: "Biocode Commons"
  date: "2013.03.23"
  minter:

ark:/87299/x6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-mvz"
  name: "UC Berkeley Museum of Vertebrate Zoology"
  date: "2013.03.20"
  minter: "https://n2t.net/a/ezid/m/ark/87299/x6"

ark:/87297/x3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-ling"
  name: "UC Berkeley Department of Linguistics"
  date: "2013.03.07"
  minter: "https://n2t.net/a/ezid/m/ark/87297/x3"

doi:10.7297/X2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-ling"
  name: "UC Berkeley Department of Linguistics"
  date: "2013.03.07"
  minter: "https://n2t.net/a/ezid/m/ark/b7297/x2"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/87295/w8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_crbs"
  name: "Center for Research in Biological Systems"
  date: "2013.03.04"
  minter: "https://n2t.net/a/ezid/m/ark/87295/w8"

doi:10.7295/W9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_crbs"
  name: "Center for Research in Biological Systems"
  date: "2013.03.04"
  minter: "https://n2t.net/a/ezid/m/ark/b7295/w9"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.6075/W7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_rcidc"
  name: "UCSD Research Cyberinfrastructure Data Curation"
  date: "2013.02.21"
  minter: "https://n2t.net/a/ezid/m/ark/b6075/w7"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.7291/V9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd-lib"
  name: "UCSC Library"
  date: "2013.01.23"
  minter: "https://n2t.net/a/ezid/m/ark/b7291/v9"
  registration_agency: "datacite"
  datacenter: "CDL.UCSC"
  prefix_shares_datacenter: "true"

ark:/87290/v8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "tkn"
  name: "University of Tennessee"
  date: "2013.01.18"
  minter: "https://n2t.net/a/ezid/m/ark/87290/v8"

doi:10.7288/V4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_earthref"
  name: "EarthRef"
  date: "2012.12.17"
  minter: "https://n2t.net/a/ezid/m/ark/b7288/v4"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/87286/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-bcid"
  name: "Biocode Commons (UCB only)"
  date: "2012.12.06"
  minter:

doi:10.7286/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-bcid"
  name: "Biocode Commons (UCB only)"
  date: "2012.12.06"
  minter: "https://n2t.net/a/ezid/m/ark/b7286/v1"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/87285/t8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd-cmmap"
  name: "Center for Multiscale Modeling of Atmospheric Processes"
  date: "2012.11.10"
  minter: "https://n2t.net/a/ezid/m/ark/87285/t8"

doi:10.7285/T7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd-cmmap"
  name: "Center for Multiscale Modeling of Atmospheric Processes"
  date: "2012.11.10"
  minter: "https://n2t.net/a/ezid/m/ark/b7285/t7"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/87281/t2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "jhudms"
  name: "Johns Hopkins University Data Archive"
  date: "2012.09.13"
  minter: "https://n2t.net/a/ezid/m/ark/87281/t2"

datacite:CDL.UCI:
  type: "datacenter"
  manager: "ezid"
  name: "UC Irvine"

ark:/87280/t0:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci"
  name: "UC Irvine Library"
  date: "2012.09.10"
  minter: "https://n2t.net/a/ezid/m/ark/87280/t0"

doi:10.7280/S9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "uci"
  name: "UC Irvine Library"
  date: "2012.09.10"
  minter: "https://n2t.net/a/ezid/m/ark/b7280/s9"
  registration_agency: "datacite"
  datacenter: "CDL.UCI"
  prefix_shares_datacenter: "true"

ark:/87279/s8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_ooi"
  name: "UCSD Ocean Observatory Initiative"
  date: "2012.08.16"
  minter: "https://n2t.net/a/ezid/m/ark/87279/s8"

doi:10.7279/S7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_ooi"
  name: "UCSD Ocean Observatory Initiative"
  date: "2012.08.16"
  minter: "https://n2t.net/a/ezid/m/ark/b7279/s7"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/87278/s6:
  type: "shoulder"
  #eziduser: "uofutah"
  manager: "ezid"
  name: "University of Utah"
  date: "2012.08.16"
  minter: "https://n2t.net/a/ezid/m/ark/87278/s6"

  # disabled 2019.10.30 due to non-payment
ark:/87273/q8:
  type: "shoulder"
  active: "false"
  manager: "ezid"
  #eziduser: "washstate"
  name: "Washington State University"
  date: "2012.07.20"
  minter: "https://n2t.net/a/ezid/m/ark/87273/q8"

ark:/87272/q7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "datashare"
  name: "UCSF Clinical & Translational Science Institute (CTSI)"
  date: "2012.07.10"
  minter: "https://n2t.net/a/ezid/m/ark/87272/q7"

doi:10.7272/Q6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "datashare"
  name: "UCSF Clinical & Translational Science Institute (CTSI)"
  date: "2012.07.10"
  minter: "https://n2t.net/a/ezid/m/ark/b7272/q6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSF"
  prefix_shares_datacenter: "true"

ark:/29114/q5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsf"
  name: "UCSF"
  date: "2012.07.10"
  minter: "https://n2t.net/a/ezid/m/ark/29114/q5"

doi:10.7271/Q4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsf"
  name: "UCSF"
  date: "2012.07.10"
  minter: "https://n2t.net/a/ezid/m/ark/b7271/q4"
  registration_agency: "datacite"
  datacenter: "CDL.UCSF"
  prefix_shares_datacenter: "true"

ark:/87270/q3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_mgilson"
  name: "UCSD Skaggs School of Pharmacy and Pharmaceutical Sciences"
  date: "2012.07.02"
  minter: "https://n2t.net/a/ezid/m/ark/87270/q3"

doi:10.7270/Q2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_mgilson"
  name: "UCSD Skaggs School of Pharmacy and Pharmaceutical Sciences"
  date: "2012.07.02"
  minter: "https://n2t.net/a/ezid/m/ark/b7270/q2"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/84246/p7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_jhelly"
  name: "California Coastal Atlas"
  date: "2012.06.27"
  minter: "https://n2t.net/a/ezid/m/ark/84246/p7"

doi:10.4246/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_jhelly"
  name: "California Coastal Atlas"
  date: "2012.06.27"
  minter: "https://n2t.net/a/ezid/m/ark/b4246/p6"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/87268/p2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucr-bcoe"
  name: "UC Riverside Bourns College of Engineering"
  date: "2012.06.27"
  minter: "https://n2t.net/a/ezid/m/ark/87268/p2"

doi:10.7268/P1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucr-bcoe"
  name: "UC Riverside Bourns College of Engineering"
  date: "2012.06.27"
  minter: "https://n2t.net/a/ezid/m/ark/b7268/p1"
  registration_agency: "datacite"
  datacenter: "CDL.UCR"
  prefix_shares_datacenter: "true"

ark:/86086/n2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucrlibrary"
  name: "UC Riverside"
  date: "2012.05.26"
  minter: "https://n2t.net/a/ezid/m/ark/86086/n2"

doi:10.6086/N1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucrlibrary"
  name: "UC Riverside"
  date: "2012.05.26"
  minter: "https://n2t.net/a/ezid/m/ark/b6086/n1"
  registration_agency: "datacite"
  datacenter: "CDL.UCR"
  prefix_shares_datacenter: "true"

ark:/86085/n0:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-pisco"
  name: "Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO)"
  date: "2012.05.22"
  minter: "https://n2t.net/a/ezid/m/ark/86085/n0"

doi:10.6085/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sp-pisco"
  name: "Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO)"
  date: "2012.05.22"
  minter:
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

doi:10.6078/M7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "opencontext"
  name: "OpenContext"
  date: "2012.05.04"
  minter: "https://n2t.net/a/ezid/m/ark/b6078/m7"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

ark:/47881/m6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "bulyon1"
  name: "University of Lyon"
  date: "2012.04.13"
  minter: "https://n2t.net/a/ezid/m/ark/47881/m6"

  # k6 ARKs in a partnership between the UCB library and CDL DSC program
ark:/13030/k6:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cdldsc"
  name: "UC Berkeley/Digital Special Collections"
  date: "2012.03.28"
  minter: "https://n2t.net/a/ezid/m/ark/13030/k6"

ark:/86080/k3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-crcns.org"
  name: "Collaborative Research in Computational Neuroscience (CRCNS)"
  date: "2012.03.12"
  minter: "https://n2t.net/a/ezid/m/ark/86080/k3"

doi:10.6080/K0:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucb-crcns.org"
  name: "Collaborative Research in Computational Neuroscience (CRCNS)"
  date: "2012.03.08"
  minter: "https://n2t.net/a/ezid/m/ark/b6080/k0"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.6075/J0:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsdlib"
  name: "UCSD"
  date: "2012.03.06"
  minter: "https://n2t.net/a/ezid/m/ark/b6075/j0"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

doi:10.6078/J8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucblibrary"
  name: "UC Berkeley Human Rights Center"
  date: "2012.03.05"
  minter: "https://n2t.net/a/ezid/m/ark/b6078/j8"
  registration_agency: "datacite"
  datacenter: "CDL.UCB"
  prefix_shares_datacenter: "true"

doi:10.6079/J9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-eeb1"
  name: "UCLA Department of Ecology and Evolutionary Biology"
  date: "2012.03.05"
  minter: "https://n2t.net/a/ezid/m/ark/b6079/j9"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

ark:/86072/h9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_signaling_gateway"
  name: "UCSD Signaling Gateway"
  date: "2012.03.05"
  minter: "https://n2t.net/a/ezid/m/ark/86072/h9"

doi:10.6072/H0:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_signaling_gateway"
  name: "UCSD Signaling Gateway"
  date: "2012.03.05"
  minter: "https://n2t.net/a/ezid/m/ark/b6072/h0"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/86071/h7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucmlibrary"
  name: "UC Merced"
  date: "2012.03.02"
  minter: "https://n2t.net/a/ezid/m/ark/86071/h7"

doi:10.6071/H8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucmlibrary"
  name: "UC Merced"
  date: "2012.03.02"
  minter: "https://n2t.net/a/ezid/m/ark/b6071/h8"
  registration_agency: "datacite"
  datacenter: "CDL.UCM"
  prefix_shares_datacenter: "true"

ark:/85069/g8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_opentopo"
  name: "OpenTopography Facility"
  date: "2012.02.07"
  minter: "https://n2t.net/a/ezid/m/ark/85069/g8"

doi:10.5069/G9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd_opentopo"
  name: "OpenTopography Facility"
  date: "2012.02.07"
  minter: "https://n2t.net/a/ezid/m/ark/b5069/g9"
  registration_agency: "datacite"
  datacenter: "CDL.UCSD"
  prefix_shares_datacenter: "true"

ark:/21198/r2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-library"
  name: "UCLA Library"
  date: "2012.01.17"
  minter: "https://n2t.net/a/ezid/m/ark/21198/r2"

doi:10.5068/G5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-library"
  name: "UCLA"
  date: "2012.01.17"
  minter: "https://n2t.net/a/ezid/m/ark/b5068/g5"
  registration_agency: "datacite"
  datacenter: "CDL.UCLA"
  prefix_shares_datacenter: "true"

ark:/38305/g4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsc-lib"
  name: "UCSC Grateful Dead Archive"
  date: "2011.12.16"
  minter: "https://n2t.net/a/ezid/m/ark/38305/g4"

ark:/13030/fq:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "merritt"
  name: "DPR Legacy"
  date: "2011.12.13"
  minter:

ark:/85065/d7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ncar_library"
  name: "National Center for Atmospheric Research (NCAR)"
  date: "2011.12.13"
  minter: "https://n2t.net/a/ezid/m/ark/85065/d7"

ark:/85063/f2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-nceas"
  name: "National Center for Ecological Analysis and Synthesis (NCEAS)"
  date: "2011.12.12"
  minter: "https://n2t.net/a/ezid/m/ark/85063/f2"

doi:10.5062/F4:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-library"
  name: "UCSB"
  date: "2011.12.12"
  minter: "https://n2t.net/a/ezid/m/ark/b5062/f4"
  registration_agency: "datacite"
  datacenter: "CDL.UCSB"
  prefix_shares_datacenter: "true"

ark:/48907/f3:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "sb-bren"
  name: "UCSB Alexandria Digital Research Library"
  date: "2011.11.15"
  minter: "https://n2t.net/a/ezid/m/ark/48907/f3"

ark:/38305/f1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucsd-lib"
  name: "UCSC Library"
  date: "2011.11.06"
  minter: "https://n2t.net/a/ezid/m/ark/38305/f1"

ark:/28722/d9:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucberkeley"
  name: "UC Berkeley"
  date: "2011.09.20"
  minter: "https://n2t.net/a/ezid/m/ark/28722/d9"

doi:10.5072/FK2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "apitest"
  name: "DOI Test"
  date: "2011.08.18"
  minter: "https://n2t.net/a/ezid/m/ark/b5072/fk2"
  registration_agency: "datacite"
  datacenter: "CDL.CDL"
  prefix_shares_datacenter: "true"

doi:10.15697/:
  type: "shoulder"
  manager: "ezid"
  name: "Crossref test"
  date: "2019.06.30"
  minter: "https://n2t.net/a/ezid/m/ark/c5697/fk2"
  registration_agency: "crossref"

ark:/21198/r1:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucla-library"
  name: "UCLA"
  date: "2011.06.24"
  minter: "https://n2t.net/a/ezid/m/ark/21198/r1"

ark:/19153/b2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cndp-crdp"
  name: "CRDP academie d'Aix-Marseille"
  date: "2011.03.01"
  minter: "https://n2t.net/a/ezid/m/ark/19153/b2"

  # j2 for admin/auxiliary stuff (eg, service agreements, \"owner collections\")
ark:/13030/j2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "admin"
  name: "CDL Auxiliary"
  date: "2010.09.10"
  minter: "https://n2t.net/a/ezid/m/ark/13030/j2"

  # m5 for Merritt ingest ids and user-defined classes (eg, collections)
ark:/13030/m5:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "merritt"
  name: "Merritt"
  date: "2010.09.10"
  minter: "https://n2t.net/a/ezid/m/ark/13030/m5"

ark:/13030/c7:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "merritt"
  name: "EZID"
  date: "2010.09.09"
  minter: "https://n2t.net/a/ezid/m/ark/13030/c7"

ark:/28722/k2:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "opencontext"
  name: "OpenContext"
  date: "2010.02.01"
  minter: "https://n2t.net/a/ezid/m/ark/28722/k2"

  # Content for zz and vf from CDL DPR conversion in 2013
ark:/13030/vf:
  type: "shoulder"
  #eziduser: "merritt"
  manager: "ezid"
  name: "Legacy arkpreserve"
  date: "2009.03.09"
  minter:

ark:/13030/qt:
  # Main escholarship shoulder
  # redirect: "escholarship.org/uc/item/$blade"
  type: "shoulder"
  #eziduser: "eschol_harvester "
  manager: "ezid"
  name: "eScholarship Legacy"
  date: "2007.06.01"
  minter:

  # Content for ft and tf managed by Brian Tingle (now closed, non-ezid minters).
ark:/13030/ft:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "none"
  name: "Online Archive of California (OAC) Legacy ft"
  date: "2007.06.01"
  minter:

ark:/13030/tf:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "none"
  name: "Online Archive of California (OAC) Legacy tf"
  date: "2007.06.01"
  minter:

  # kt from Brian Tingle, no more minting
ark:/13030/kt:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "none"
  name: "Online Archive of California (OAC)"
  date: "2007.06.01"
  minter:

  # hb retired from ark.cdlib.org, run by UCB (Garey Mills) for EADs et al
ark:/13030/hb:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucblibrary"
  name: "UC Berkeley Legacy Library"
  date: "2007.06.01"
  minter:

  # contact: "Mills, Garey ||| gmills@library.berkeley.edu | +1 510-643-4092"
ark:/28722/bk:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "ucblibrary"
  name: "UC Berkeley Legacy Library bk"
  date: "2007.06.01"
  minter:

  # Content for zz and vf from CDL DPR conversion in 2013
ark:/21198/zz:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "none"
  name: "UCLA Legacy"
  date: "2007.06.01"
  minter:

ark:/13030/c8:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "cdldsc"
  name: "CDL Digital Special Collections"
  minter: "https://n2t.net/a/ezid/m/ark/13030/c8"

ark:/20775/:
  type: "shoulder"
  manager: "ezid"
  #eziduser: "merritt"
  name: "UCSD"
  minter:

  # contact: "Miller, Robert"
  # contact: "Bromley, Hank"
ark:/13960/t:
  type: "shoulder"
  manager: "oca"
  #eziduser: "none"
  name: "Open Content Alliance"
  minter:

  # contact: "Hetzner, Erik"
ark:/13030/sw1:
  type: "shoulder"
  manager: "other"
  #eziduser: "none"
  name: "CDL Web Archiving System"
  minter:

  # From Brian Tingle
  # M. Low assigned for Cal Counts; no extant objects [bn5]
ark:/13030/bn:
  type: "shoulder"
  manager: "other"
  #eziduser: "none"
  name: "?1?"
  minter:

ark:/13030/g3:
  type: "shoulder"
  manager: "other"
  #eziduser: "none"
  name: "EZID binder ids"
  minter:

datacite:CDL.CDL:
  type: "datacenter"
  manager: "ezid"
  name: "California Digital Library"

datacite:CDL.UCB:
  type: "datacenter"
  manager: "ezid"
  name: "UC Berkeley"

datacite:CDL.UCD:
  type: "datacenter"
  manager: "ezid"
  name: "UC Davis"

datacite:CDL.UCLA:
  type: "datacenter"
  manager: "ezid"
  name: "UC Los Angeles"

datacite:CDL.UCM:
  type: "datacenter"
  manager: "ezid"
  name: "UC Merced"

datacite:CDL.UCR:
  type: "datacenter"
  manager: "ezid"
  name: "UC Riverside"

datacite:CDL.UCSB:
  type: "datacenter"
  manager: "ezid"
  name: "UC Santa Barbara"

datacite:CDL.UCSC:
  type: "datacenter"
  manager: "ezid"
  name: "UC Santa Cruz"

datacite:CDL.UCSD:
  type: "datacenter"
  manager: "ezid"
  name: "UC San Diego"

datacite:CDL.UCSF:
  type: "datacenter"
  manager: "ezid"
  name: "UC San Francisco"

chebi:
  type: "scheme"
  name: "ChEBI (Chemical Entities of Biological Interest)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100009"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:${ac}"
  redirect: "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$id"
  description: "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds."
  subject: "metabolite; ontology; chemical"
  location: "UK"
  synonym: 
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "36927"
  probe: "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:36927"
  pattern: "^CHEBI:\\d+$"
  state: "98:Up"
  more: "https://www.ebi.ac.uk/chebi/"

ebi/chebi:
  type: "synonym"
  for: "chebi"

bptl/chebi:
  type: "scheme"
  name: "ChEBI through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100565"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/CHEBI/CHEBI:${ac}"
  redirect: "http://purl.bioontology.org/ontology/CHEBI/CHEBI:$id"
  description: "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds."
  subject: "metabolite; ontology; chemical"
  location: "USA"
  synonym: 
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "36927"
  probe: "http://purl.bioontology.org/ontology/CHEBI/CHEBI:36927"
  pattern: "^CHEBI:\\d+$"
  state: "95:Up"
  more: "http://bioportal.bioontology.org/ontologies/CHEBI"

ols/chebi:
  type: "scheme"
  name: "ChEBI through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100158"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/chebi/terms?obo_id=CHEBI:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/chebi/terms?obo_id=CHEBI:$id"
  description: "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds."
  subject: "metabolite; ontology; chemical"
  location: "UK"
  synonym: 
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "36927"
  probe: "https://www.ebi.ac.uk/ols/ontologies/chebi/terms?obo_id=CHEBI:36927"
  pattern: "^CHEBI:\\d+$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/chebi"

ensembl:
  type: "scheme"
  name: "Ensembl at Sanger/EMBL-EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100011"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ensembl.org/id/${ac}"
  redirect: "https://www.ensembl.org/id/$id"
  description: "Ensembl is a joint project between EMBL - EBI and the Sanger Institute  to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms."
  subject: "genome; nucleotide; sequence; schema.org; eukaryotic"
  location: "UK"
  synonym: 
  institution: "Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "ENSG00000139618"
  probe: "https://www.ensembl.org/id/ENSG00000139618"
  pattern: "^((ENS[FPTG]\\\\d{11}(\\\\.\\\\d+)?)|(FB\\\\w{2}\\\\d{7})|(Y[A-Z]{2}\\\\d{3}[a-zA-Z](\\\\-[A-Z])?)|([A-Z_a-z0-9]+(\\\\.)?(t)?(\\\\d+)?([a-z])?))$"
  state: "99:Up"
  more: "https://www.ensembl.org/"

ebi/ensembl:
  type: "synonym"
  for: "ensembl"

z011/ensembl:
  type: "scheme"
  name: "Ensembl US West mirror"
  alias: 
  provider: "z011"
  provider_id: "MIR:00100561"
  sort_score: "4"
  primary: "false"
  forward: "http://uswest.ensembl.org/id/${ac}"
  redirect: "http://uswest.ensembl.org/id/$id"
  description: "Ensembl is a joint project between EMBL - EBI and the Sanger Institute  to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms."
  subject: "genome; nucleotide; sequence; schema.org; eukaryotic"
  location: "USA"
  synonym: 
  institution: 
  prefixed: "false"
  test: "ENSG00000139618"
  probe: "http://uswest.ensembl.org/id/ENSG00000139618"
  pattern: "^((ENS[FPTG]\\\\d{11}(\\\\.\\\\d+)?)|(FB\\\\w{2}\\\\d{7})|(Y[A-Z]{2}\\\\d{3}[a-zA-Z](\\\\-[A-Z])?)|([A-Z_a-z0-9]+(\\\\.)?(t)?(\\\\d+)?([a-z])?))$"
  state: "99:Up"
  more: "http://uswest.ensembl.org/"

z012/ensembl:
  type: "scheme"
  name: "Ensembl US East mirror"
  alias: 
  provider: "z012"
  provider_id: "MIR:00100562"
  sort_score: "4"
  primary: "false"
  forward: "http://useast.ensembl.org/id/${ac}"
  redirect: "http://useast.ensembl.org/id/$id"
  description: "Ensembl is a joint project between EMBL - EBI and the Sanger Institute  to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms."
  subject: "genome; nucleotide; sequence; schema.org; eukaryotic"
  location: "USA"
  synonym: 
  institution: 
  prefixed: "false"
  test: "ENSG00000139618"
  probe: "http://useast.ensembl.org/id/ENSG00000139618"
  pattern: "^((ENS[FPTG]\\\\d{11}(\\\\.\\\\d+)?)|(FB\\\\w{2}\\\\d{7})|(Y[A-Z]{2}\\\\d{3}[a-zA-Z](\\\\-[A-Z])?)|([A-Z_a-z0-9]+(\\\\.)?(t)?(\\\\d+)?([a-z])?))$"
  state: "99:Up"
  more: "http://useast.ensembl.org/"

z013/ensembl:
  type: "scheme"
  name: "Ensembl Asia mirror"
  alias: 
  provider: "z013"
  provider_id: "MIR:00100563"
  sort_score: "1"
  primary: "false"
  forward: "http://asia.ensembl.org/id/${ac}"
  redirect: "http://asia.ensembl.org/id/$id"
  description: "Ensembl is a joint project between EMBL - EBI and the Sanger Institute  to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms."
  subject: "genome; nucleotide; sequence; schema.org; eukaryotic"
  location: "Singapore"
  synonym: 
  institution: 
  prefixed: "false"
  test: "ENSG00000139618"
  probe: "http://asia.ensembl.org/id/ENSG00000139618"
  pattern: "^((ENS[FPTG]\\\\d{11}(\\\\.\\\\d+)?)|(FB\\\\w{2}\\\\d{7})|(Y[A-Z]{2}\\\\d{3}[a-zA-Z](\\\\-[A-Z])?)|([A-Z_a-z0-9]+(\\\\.)?(t)?(\\\\d+)?([a-z])?))$"
  state: "99:Up"
  more: "http://asia.ensembl.org/"

ec-code:
  type: "scheme"
  name: "IntEnZ (Integrated relational Enzyme database)"
  alias: "ec"
  provider: "intenz"
  provider_id: "MIR:00100001"
  sort_score: "3"
  primary: "false"
  forward: "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=${ac}"
  redirect: "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$id"
  description: "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions."
  subject: "enzyme; classification; protein; taxonomy"
  location: "UK"
  synonym: "EC; Enzyme Classification; EC code"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "1.1.1.1"
  probe: "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=1.1.1.1"
  pattern: "^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/intenz/"

intenz/ec-code:
  type: "synonym"
  for: "ec-code"

enzymeportal/ec-code:
  type: "scheme"
  name: "Enzyme Portal through EMBL-EBI"
  alias: "ec"
  provider: "enzymeportal"
  provider_id: "MIR:00100835"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/enzymeportal/search/ec/${ac}"
  redirect: "https://www.ebi.ac.uk/enzymeportal/search/ec/$id"
  description: "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions."
  subject: "enzyme; classification; protein; taxonomy"
  location: "UK"
  synonym: "EC; Enzyme Classification; EC code"
  institution: "Enzyme Portal at European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "1.1.1.1"
  probe: "https://www.ebi.ac.uk/enzymeportal/search/ec/1.1.1.1"
  pattern: "^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$"
  state: "0:Unknown"
  more: "https://www.ebi.ac.uk/enzymeportal"

z014/ec-code:
  type: "scheme"
  name: "KEGG Ligand Database for Enzyme Nomenclature"
  alias: "ec"
  provider: "z014"
  provider_id: "MIR:00100002"
  sort_score: "1"
  primary: "false"
  forward: "https://www.genome.jp/dbget-bin/www_bget?ec:${ac}"
  redirect: "https://www.genome.jp/dbget-bin/www_bget?ec:$id"
  description: "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions."
  subject: "enzyme; classification; protein; taxonomy"
  location: "Japan"
  synonym: "EC; Enzyme Classification; EC code"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "1.1.1.1"
  probe: "https://www.genome.jp/dbget-bin/www_bget?ec:1.1.1.1"
  pattern: "^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$"
  state: "100:Up"
  more: "https://www.genome.jp/dbget-bin/www_bfind?enzyme"

expenz/ec-code:
  type: "scheme"
  name: "ExploreEnz at Trinity College"
  alias: "ec"
  provider: "expenz"
  provider_id: "MIR:00100308"
  sort_score: "1"
  primary: "false"
  forward: "http://www.enzyme-database.org/query.php?ec=${ac}"
  redirect: "http://www.enzyme-database.org/query.php?ec=$id"
  description: "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions."
  subject: "enzyme; classification; protein; taxonomy"
  location: "Ireland"
  synonym: "EC; Enzyme Classification; EC code"
  institution: "Trinity College, Dublin"
  prefixed: "false"
  test: "1.1.1.1"
  probe: "http://www.enzyme-database.org/query.php?ec=1.1.1.1"
  pattern: "^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$"
  state: "100:Up"
  more: "http://www.enzyme-database.org/"

expasy/ec-code:
  type: "scheme"
  name: "Enzyme nomenclature database, ExPASy (Expert Protein Analysis System)"
  alias: "ec"
  provider: "expasy"
  provider_id: "MIR:00100003"
  sort_score: "1"
  primary: "false"
  forward: "https://enzyme.expasy.org/EC/${ac}"
  redirect: "https://enzyme.expasy.org/EC/$id"
  description: "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions."
  subject: "enzyme; classification; protein; taxonomy"
  location: "Switzerland"
  synonym: "EC; Enzyme Classification; EC code"
  institution: "Swiss Institute of Bioinformatics"
  prefixed: "false"
  test: "1.1.1.1"
  probe: "https://enzyme.expasy.org/EC/1.1.1.1"
  pattern: "^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$"
  state: "88:Unknown"
  more: "https://enzyme.expasy.org/"

uniprot:
  type: "scheme"
  name: "Universal Protein Resource using Persistent URL system"
  alias: "uniprotkb"
  provider: 
  provider_id: "MIR:00100164"
  sort_score: "6"
  primary: "true"
  forward: "https://purl.uniprot.org/uniprot/${ac}"
  redirect: "https://purl.uniprot.org/uniprot/$id"
  description: "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information."
  subject: "protein; sequence"
  location: 
  synonym: "UniProtKB/Swiss-Prot; UniProtKB; UniProt-TrEMBL; UniProt; Protein Knowledgebase; UniProt/TrEMBL"
  institution: "UniProt Consortium"
  prefixed: "false"
  test: "P0DP23"
  probe: "https://purl.uniprot.org/uniprot/P0DP23"
  pattern: "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$"
  state: "99:Unknown"
  more: "https://www.uniprot.org/"

ncbi/uniprot:
  type: "scheme"
  name: "UniProt through NCBI"
  alias: "uniprotkb"
  provider: "ncbi"
  provider_id: "MIR:00100330"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/protein/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/protein/$id"
  description: "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information."
  subject: "protein; sequence"
  location: "USA"
  synonym: "UniProtKB/Swiss-Prot; UniProtKB; UniProt-TrEMBL; UniProt; Protein Knowledgebase; UniProt/TrEMBL"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "P0DP23"
  probe: "https://www.ncbi.nlm.nih.gov/protein/P0DP23"
  pattern: "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/protein/"

taxonomy:
  type: "scheme"
  name: "NCBI Taxonomy"
  alias: "taxon"
  provider: "ncbi"
  provider_id: "MIR:00100007"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$id"
  description: "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."
  subject: "taxonomy"
  location: "USA"
  synonym: "NEWT; NCBI taxonomy; NCBITAXON"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "9606"
  probe: "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/Taxonomy/"

ncbi/taxonomy:
  type: "synonym"
  for: "taxonomy"

bptl/taxonomy:
  type: "scheme"
  name: "BioPortal"
  alias: "taxon"
  provider: "bptl"
  provider_id: "MIR:00100507"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/NCBITAXON/${ac}"
  redirect: "http://purl.bioontology.org/ontology/NCBITAXON/$id"
  description: "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."
  subject: "taxonomy"
  location: "USA"
  synonym: "NEWT; NCBI taxonomy; NCBITAXON"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "9606"
  probe: "http://purl.bioontology.org/ontology/NCBITAXON/9606"
  pattern: "^\\d+$"
  state: "88:Up"
  more: "http://bioportal.bioontology.org/ontologies/NCBITAXON"

z015/taxonomy:
  type: "scheme"
  name: "Taxonomy through UniProt PURL"
  alias: "taxon"
  provider: "z015"
  provider_id: "MIR:00100019"
  sort_score: "4"
  primary: "false"
  forward: "https://purl.uniprot.org/taxonomy/${ac}"
  redirect: "https://purl.uniprot.org/taxonomy/$id"
  description: "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."
  subject: "taxonomy"
  location: "USA, UK and Switzerland"
  synonym: "NEWT; NCBI taxonomy; NCBITAXON"
  institution: "UniProt Consortium"
  prefixed: "false"
  test: "9606"
  probe: "https://purl.uniprot.org/taxonomy/9606"
  pattern: "^\\d+$"
  state: "99:Unknown"
  more: "https://www.uniprot.org/taxonomy/"

ebi/taxonomy:
  type: "scheme"
  name: "European Nucleotide Archive (ENA)"
  alias: "taxon"
  provider: "ebi"
  provider_id: "MIR:00100299"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ena/data/view/Taxon:${ac}"
  redirect: "https://www.ebi.ac.uk/ena/data/view/Taxon:$id"
  description: "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."
  subject: "taxonomy"
  location: "UK"
  synonym: "NEWT; NCBI taxonomy; NCBITAXON"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "9606"
  probe: "https://www.ebi.ac.uk/ena/data/view/Taxon:9606"
  pattern: "^\\d+$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/ena/"

ols/taxonomy:
  type: "scheme"
  name: "NCBI Taxonomy through OLS"
  alias: "taxon"
  provider: "ols"
  provider_id: "MIR:00100770"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/ncbitaxon/terms?short_form=NCBITaxon_${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/ncbitaxon/terms?short_form=NCBITaxon_$id"
  description: "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."
  subject: "taxonomy"
  location: "UK"
  synonym: "NEWT; NCBI taxonomy; NCBITAXON"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "9606"
  probe: "https://www.ebi.ac.uk/ols/ontologies/ncbitaxon/terms?short_form=NCBITaxon_9606"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/ncbitaxon/"

z016/taxonomy:
  type: "scheme"
  name: "Bio2RDF"
  alias: "taxon"
  provider: "z016"
  provider_id: "MIR:00100695"
  sort_score: "1"
  primary: "false"
  forward: "http://taxonomy.bio2rdf.org/describe/?url=http://bio2rdf.org/taxonomy:${ac}"
  redirect: "http://taxonomy.bio2rdf.org/describe/?url=http://bio2rdf.org/taxonomy:$id"
  description: "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."
  subject: "taxonomy"
  location: 
  synonym: "NEWT; NCBI taxonomy; NCBITAXON"
  institution: "Bio2RDF.org"
  prefixed: "false"
  test: "9606"
  probe: "http://taxonomy.bio2rdf.org/describe/?url=http://bio2rdf.org/taxonomy:9606"
  pattern: "^\\d+$"
  state: "60:Down"
  more: "http://taxonomy.bio2rdf.org/fct/"

biomodels.db:
  type: "scheme"
  name: "BioModels Database"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100006"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/biomodels/${ac}"
  redirect: "https://www.ebi.ac.uk/biomodels/$id"
  description: "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests."
  subject: "model"
  location: "UK"
  synonym: "BioModels"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "BIOMD0000000048"
  probe: "https://www.ebi.ac.uk/biomodels/BIOMD0000000048"
  pattern: "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/biomodels/"

ebi/biomodels.db:
  type: "synonym"
  for: "biomodels.db"

z017/biomodels.db:
  type: "scheme"
  name: "Caltech mirror"
  alias: 
  provider: "z017"
  provider_id: "MIR:00100107"
  sort_score: "4"
  primary: "false"
  forward: "http://biomodels.caltech.edu/${ac}"
  redirect: "http://biomodels.caltech.edu/$id"
  description: "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests."
  subject: "model"
  location: "USA"
  synonym: "BioModels"
  institution: "California Institute of Technology"
  prefixed: "false"
  test: "BIOMD0000000048"
  probe: "http://biomodels.caltech.edu/BIOMD0000000048"
  pattern: "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$"
  state: "84:Up"
  more: "http://biomodels.caltech.edu/"

omicsdi/biomodels.db:
  type: "scheme"
  name: "BioModels through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100855"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/biomodels/${ac}"
  redirect: "https://www.omicsdi.org/dataset/biomodels/$id"
  description: "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests."
  subject: "model"
  location: "UK"
  synonym: "BioModels"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "BIOMD0000000048"
  probe: "https://www.omicsdi.org/dataset/biomodels/BIOMD0000000048"
  pattern: "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

miriam.collection:
  type: "scheme"
  name: "MIRIAM Resources (data collection)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100005"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/miriam/main/${ac}"
  redirect: "https://www.ebi.ac.uk/miriam/main/$id"
  description: "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections."
  subject: "schema.org; registry"
  location: "UK"
  synonym: "MIRIAM Resources; MIRIAM"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "MIR:00000008"
  probe: "https://www.ebi.ac.uk/miriam/main/MIR:00000008"
  pattern: "^MIR:000\\d{5}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/miriam/"

ebi/miriam.collection:
  type: "synonym"
  for: "miriam.collection"

icd:
  type: "scheme"
  name: "International Statistical Classification of Diseases and Related Health Problems"
  alias: 
  provider: 
  provider_id: "MIR:00100016"
  sort_score: "1"
  primary: "false"
  forward: "http://apps.who.int/classifications/icd10/browse/2010/en#/${ac}"
  redirect: "http://apps.who.int/classifications/icd10/browse/2010/en#/$id"
  description: "The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes."
  subject: "taxonomy; schema.org; disease"
  location: "Germany"
  synonym: "MIRIAM Resources; MIRIAM"
  institution: "German Institute of Medical Documentation and Information"
  prefixed: "false"
  test: "C34"
  probe: "http://apps.who.int/classifications/icd10/browse/2010/en#/C34"
  pattern: "^[A-Z]\\d+(\\.[-\\d+])?$"
  state: "99:Probably up"
  more: "http://www.who.int/classifications/icd/en/"

intact:
  type: "scheme"
  name: "IntAct at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100017"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/intact/interaction/${ac}"
  redirect: "https://www.ebi.ac.uk/intact/interaction/$id"
  description: "IntAct provides a freely available, open source database system and analysis tools for protein interaction data."
  subject: "protein; interaction"
  location: "UK"
  synonym: "MIRIAM Resources; MIRIAM"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "EBI-2307691"
  probe: "https://www.ebi.ac.uk/intact/interaction/EBI-2307691"
  pattern: "^EBI\\-[0-9]+$"
  state: "98:Up"
  more: "https://www.ebi.ac.uk/intact/"

ebi/intact:
  type: "synonym"
  for: "intact"

interpro:
  type: "scheme"
  name: "InterPro"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100018"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/interpro/entry/${ac}"
  redirect: "https://www.ebi.ac.uk/interpro/entry/$id"
  description: "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences."
  subject: "protein; domain"
  location: "UK"
  synonym: "MIRIAM Resources; MIRIAM"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "IPR000100"
  probe: "https://www.ebi.ac.uk/interpro/entry/IPR000100"
  pattern: "^IPR\\d{6}$"
  state: "98:Down"
  more: "https://www.ebi.ac.uk/interpro/"

ebi/interpro:
  type: "synonym"
  for: "interpro"

z018/interpro:
  type: "scheme"
  name: "Bio2RDF"
  alias: 
  provider: "z018"
  provider_id: "MIR:00100697"
  sort_score: "1"
  primary: "false"
  forward: "http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:${ac}"
  redirect: "http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:$id"
  description: "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences."
  subject: "protein; domain"
  location: 
  synonym: "MIRIAM Resources; MIRIAM"
  institution: "Bio2RDF.org"
  prefixed: "false"
  test: "IPR000100"
  probe: "http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:IPR000100"
  pattern: "^IPR\\d{6}$"
  state: "17:Down"
  more: "http://interpro.bio2rdf.org/fct/"

kegg.pathway:
  type: "scheme"
  name: "KEGG PATHWAY Database"
  alias: 
  provider: 
  provider_id: "MIR:00100020"
  sort_score: "6"
  primary: "true"
  forward: "https://www.kegg.jp/entry/${ac}"
  redirect: "https://www.kegg.jp/entry/$id"
  description: "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks."
  subject: "pathway"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "hsa00620"
  probe: "https://www.kegg.jp/entry/hsa00620"
  pattern: "^\\w{2,4}\\d{5}$"
  state: "100:Up"
  more: "https://www.genome.jp/kegg/pathway.html"

kegg.compound:
  type: "scheme"
  name: "KEGG LIGAND Database"
  alias: 
  provider: 
  provider_id: "MIR:00100021"
  sort_score: "6"
  primary: "true"
  forward: "https://www.kegg.jp/entry/${ac}"
  redirect: "https://www.kegg.jp/entry/$id"
  description: "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life."
  subject: "metabolite; structure; chemical"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "C12345"
  probe: "https://www.kegg.jp/entry/C12345"
  pattern: "^C\\d+$"
  state: "100:Up"
  more: "https://www.genome.jp/kegg/ligand.html"

kegg.reaction:
  type: "scheme"
  name: "KEGG Reaction Database"
  alias: 
  provider: 
  provider_id: "MIR:00100022"
  sort_score: "6"
  primary: "true"
  forward: "https://www.kegg.jp/entry/${ac}"
  redirect: "https://www.kegg.jp/entry/$id"
  description: "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life."
  subject: "reaction"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "R00100"
  probe: "https://www.kegg.jp/entry/R00100"
  pattern: "^R\\d+$"
  state: "100:Up"
  more: "https://www.genome.jp/kegg/reaction/"

pubmed:
  type: "scheme"
  name: "NCBI PubMed"
  alias: "pmid"
  provider: "ncbi"
  provider_id: "MIR:00100023"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ncbi.nlm.nih.gov/pubmed/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/pubmed/$id"
  description: "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s."
  subject: "schema.org; bibliography"
  location: "USA"
  synonym: "KEGG"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "16333295"
  probe: "https://www.ncbi.nlm.nih.gov/pubmed/16333295"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/PubMed/"

ncbi/pubmed:
  type: "synonym"
  for: "pubmed"

epmc/pubmed:
  type: "scheme"
  name: "Europe PMC"
  alias: "pmid"
  provider: "epmc"
  provider_id: "MIR:00100497"
  sort_score: "2"
  primary: "false"
  forward: "http://europepmc.org/abstract/MED/${ac}"
  redirect: "http://europepmc.org/abstract/MED/$id"
  description: "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s."
  subject: "schema.org; bibliography"
  location: "UK"
  synonym: "KEGG"
  institution: "Europe PubMed Central partners"
  prefixed: "false"
  test: "16333295"
  probe: "http://europepmc.org/abstract/MED/16333295"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://europepmc.org/"

hubmed/pubmed:
  type: "scheme"
  name: "HubMed"
  alias: "pmid"
  provider: "hubmed"
  provider_id: "MIR:00100064"
  sort_score: "1"
  primary: "false"
  forward: "http://www.hubmed.org/display.cgi?uids=${ac}"
  redirect: "http://www.hubmed.org/display.cgi?uids=$id"
  description: "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s."
  subject: "schema.org; bibliography"
  location: "United Kingdom"
  synonym: "KEGG"
  institution: "Alfred D. Eaton"
  prefixed: "false"
  test: "16333295"
  probe: "http://www.hubmed.org/display.cgi?uids=16333295"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.hubmed.org/"

z019/pubmed:
  type: "scheme"
  name: "PubMed through Linkedlife data"
  alias: "pmid"
  provider: "z019"
  provider_id: "MIR:00100745"
  sort_score: "1"
  primary: "false"
  forward: "http://linkedlifedata.com/resource/pubmed/id/${ac}"
  redirect: "http://linkedlifedata.com/resource/pubmed/id/$id"
  description: "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s."
  subject: "schema.org; bibliography"
  location: "Bulgaria"
  synonym: "KEGG"
  institution: "Linkedlifedata, Ontotext, Sofia"
  prefixed: "false"
  test: "23735196"
  probe: "http://linkedlifedata.com/resource/pubmed/id/23735196"
  pattern: "^\\d+$"
  state: "86:Up"
  more: "http://linkedlifedata.com/"

mim:
  type: "scheme"
  name: "OMIM at John Hopkins"
  alias: "omim"
  provider: 
  provider_id: "MIR:00100024"
  sort_score: "6"
  primary: "true"
  forward: "https://omim.org/entry/${ac}"
  redirect: "https://omim.org/entry/$id"
  description: "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders."
  subject: "phenotype; disorder; human"
  location: "USA"
  synonym: "Mendelian Inheritance in Man; Online Mendelian Inheritance in Man; MIM"
  institution: "Johns Hopkins University, Baltimore, Maryland"
  prefixed: "false"
  test: "603903"
  probe: "https://omim.org/entry/603903"
  pattern: "^[*#+%^]?\\d{6}$"
  state: "100:Up"
  more: "https://omim.org/"

z020/mim:
  type: "scheme"
  name: "OMIM mirror at John Hopkins"
  alias: "omim"
  provider: "z020"
  provider_id: "MIR:00100777"
  sort_score: "4"
  primary: "false"
  forward: "http://mirror.omim.org/entry/${ac}"
  redirect: "http://mirror.omim.org/entry/$id"
  description: "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders."
  subject: "phenotype; disorder; human"
  location: "USA"
  synonym: "Mendelian Inheritance in Man; Online Mendelian Inheritance in Man; MIM"
  institution: "Johns Hopkins University, Baltimore, Maryland"
  prefixed: "false"
  test: "603903"
  probe: "http://mirror.omim.org/entry/603903"
  pattern: "^[*#+%^]?\\d{6}$"
  state: "100:Up"
  more: "http://mirror.omim.org/"

pirsf:
  type: "scheme"
  name: "PIRSF"
  alias: 
  provider: 
  provider_id: "MIR:00100025"
  sort_score: "4"
  primary: "false"
  forward: "https://pir.georgetown.edu/cgi-bin/ipcSF?id=${ac}"
  redirect: "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$id"
  description: "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships."
  subject: "clustering; protein"
  location: "USA"
  synonym: "Protein Information Resource"
  institution: "Georgetown University Medical Center"
  prefixed: "false"
  test: "PIRSF000100"
  probe: "https://pir.georgetown.edu/cgi-bin/ipcSF?id=PIRSF000100"
  pattern: "^PIRSF\\d{6}$"
  state: "93:Down"
  more: "https://pir.georgetown.edu/"

reactome:
  type: "scheme"
  name: "Reactome, a curated knowledgebase of biological pathways"
  alias: 
  provider: 
  provider_id: "MIR:00100026"
  sort_score: "4"
  primary: "false"
  forward: "https://reactome.org/content/detail/${ac}"
  redirect: "https://reactome.org/content/detail/$id"
  description: "The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology."
  subject: "pathway; human; reaction; schema.org"
  location: "Canada / USA / UK"
  synonym: "Reactome Stable ID"
  institution: "Ontario Institute for Cancer Research, NYU Medical School, Cold Spring Harbor Laboratory and European Bioinformatics Institute"
  prefixed: "false"
  test: "R-HSA-201451"
  probe: "https://reactome.org/content/detail/R-HSA-201451"
  pattern: "(^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$)|(^REACT_\\d+(\\.\\d+)?$)"
  state: "97:Probably up"
  more: "https://www.reactome.org/"

doi:
  type: "scheme"
  name: "Digital Object Identifier"
  alias: 
  provider: 
  provider_id: "MIR:00100010"
  sort_score: "6"
  primary: "true"
  forward: "https://doi.org/${ac}"
  redirect: "https://doi.org/$id"
  description: "The Digital Object Identifier System is for identifying content objects in the digital environment."
  subject: "bibliography"
  location: "United Kingdom"
  synonym: "Digital Object Identifier"
  institution: "International DOI Foundation"
  prefixed: "false"
  test: "10.1038/nbt1156"
  probe: "https://doi.org/10.1038/nbt1156"
  pattern: "^(doi\\:)?\\d{2}\\.\\d{4}.*$"
  state: "86:Unknown"
  more: "https://www.doi.org/"

pdb:
  type: "scheme"
  name: "RCSB PDB"
  alias: 
  provider: "rcsb"
  provider_id: "MIR:00100029"
  sort_score: "4"
  primary: "false"
  forward: "https://www.rcsb.org/pdb/explore/explore.do?structureId=${ac}"
  redirect: "https://www.rcsb.org/pdb/explore/explore.do?structureId=$id"
  description: "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules."
  subject: "protein; structure"
  location: "USA"
  synonym: "PDB"
  institution: "Rutgers, The State University of New Jersey"
  prefixed: "false"
  test: "2gc4"
  probe: "https://www.rcsb.org/pdb/explore/explore.do?structureId=2gc4"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "100:Up"
  more: "https://www.pdb.org/"

rcsb/pdb:
  type: "synonym"
  for: "pdb"

pdbe/pdb:
  type: "scheme"
  name: "Protein Databank in Europe (PDBe)"
  alias: 
  provider: "pdbe"
  provider_id: "MIR:00100037"
  sort_score: "2"
  primary: "false"
  forward: "http://www.pdbe.org/${ac}"
  redirect: "http://www.pdbe.org/$id"
  description: "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules."
  subject: "protein; structure"
  location: "UK"
  synonym: "PDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "2gc4"
  probe: "http://www.pdbe.org/2gc4"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "100:Up"
  more: "http://www.pdbe.org/"

ebi/pdb:
  type: "scheme"
  name: "Protein Databank through PDBsum"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100166"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/pdbsum/${ac}"
  redirect: "https://www.ebi.ac.uk/pdbsum/$id"
  description: "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules."
  subject: "protein; structure"
  location: "UK"
  synonym: "PDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "2gc4"
  probe: "https://www.ebi.ac.uk/pdbsum/2gc4"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/pdbsum/"

z021/pdb:
  type: "scheme"
  name: "Proteopedia"
  alias: 
  provider: "z021"
  provider_id: "MIR:00100096"
  sort_score: "1"
  primary: "false"
  forward: "http://proteopedia.org/wiki/index.php/${ac}"
  redirect: "http://proteopedia.org/wiki/index.php/$id"
  description: "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules."
  subject: "protein; structure"
  location: "Israel"
  synonym: "PDB"
  institution: "Weizmann Institute of Science"
  prefixed: "false"
  test: "2gc4"
  probe: "http://proteopedia.org/wiki/index.php/2gc4"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "100:Up"
  more: "http://www.proteopedia.org/"

pdbj/pdb:
  type: "scheme"
  name: "Protein Data Bank Japan (PDBj)"
  alias: 
  provider: "pdbj"
  provider_id: "MIR:00100165"
  sort_score: "1"
  primary: "false"
  forward: "https://pdbj.org/mine/summary/${ac}"
  redirect: "https://pdbj.org/mine/summary/$id"
  description: "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules."
  subject: "protein; structure"
  location: "Japan"
  synonym: "PDB"
  institution: "Institute for Protein Research, Osaka University"
  prefixed: "false"
  test: "2gc4"
  probe: "https://pdbj.org/mine/summary/2gc4"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "93:Unknown"
  more: "http://www.pdbj.org/"

go:
  type: "scheme"
  name: "AmiGO 2"
  alias: 
  provider: "amigo"
  provider_id: "MIR:00100013"
  sort_score: "6"
  primary: "true"
  forward: "http://amigo.geneontology.org/amigo/term/GO:${ac}"
  redirect: "http://amigo.geneontology.org/amigo/term/GO:$id"
  description: "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."
  subject: "ontology"
  location: "USA"
  synonym: "GO"
  institution: "The Gene Ontology Consortium"
  prefixed: "true"
  test: "0006915"
  probe: "http://amigo.geneontology.org/amigo/term/GO:0006915"
  pattern: "^GO:\\d{7}$"
  state: "99:Up"
  more: "http://amigo.geneontology.org/"

amigo/go:
  type: "synonym"
  for: "go"

z022/go:
  type: "scheme"
  name: "GO Browser"
  alias: 
  provider: "z022"
  provider_id: "MIR:00100015"
  sort_score: "4"
  primary: "false"
  forward: "http://www.informatics.jax.org/searches/GO.cgi?id=GO:${ac}"
  redirect: "http://www.informatics.jax.org/searches/GO.cgi?id=GO:$id"
  description: "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."
  subject: "ontology"
  location: "USA"
  synonym: "GO"
  institution: "The Jackson Laboratory"
  prefixed: "true"
  test: "0006915"
  probe: "http://www.informatics.jax.org/searches/GO.cgi?id=GO:0006915"
  pattern: "^GO:\\d{7}$"
  state: "82:Up"
  more: "http://www.informatics.jax.org/searches/GO_form.shtml"

bptl/go:
  type: "scheme"
  name: "GO through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100237"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/GO/GO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/GO/GO:$id"
  description: "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."
  subject: "ontology"
  location: "USA"
  synonym: "GO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0006915"
  probe: "http://purl.bioontology.org/ontology/GO/GO:0006915"
  pattern: "^GO:\\d{7}$"
  state: "95:Up"
  more: "http://bioportal.bioontology.org/ontologies/GO"

z023/go:
  type: "scheme"
  name: "GO through PANTHER"
  alias: 
  provider: "z023"
  provider_id: "MIR:00100585"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pantherdb.org/panther/category.do?categoryAcc=GO:${ac}"
  redirect: "http://www.pantherdb.org/panther/category.do?categoryAcc=GO:$id"
  description: "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."
  subject: "ontology"
  location: "USA"
  synonym: "GO"
  institution: "Keck School of Medicine, University of Southern California"
  prefixed: "true"
  test: "0000003"
  probe: "http://www.pantherdb.org/panther/category.do?categoryAcc=GO:0000003"
  pattern: "^GO:\\d{7}$"
  state: "99:Up"
  more: "http://www.pantherdb.org/"

ols/go:
  type: "scheme"
  name: "GO through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100675"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/go/terms?obo_id=GO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/go/terms?obo_id=GO:$id"
  description: "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."
  subject: "ontology"
  location: "UK"
  synonym: "GO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0006915"
  probe: "https://www.ebi.ac.uk/ols/ontologies/go/terms?obo_id=GO:0006915"
  pattern: "^GO:\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/go"

quickgo/go:
  type: "scheme"
  name: "QuickGO (Gene Ontology browser)"
  alias: 
  provider: "quickgo"
  provider_id: "MIR:00100012"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:${ac}"
  redirect: "https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:$id"
  description: "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."
  subject: "ontology"
  location: "UK"
  synonym: "GO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0006915"
  probe: "https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0006915"
  pattern: "^GO:\\d{7}$"
  state: "85:Up"
  more: "https://www.ebi.ac.uk/QuickGO/"

sgd:
  type: "scheme"
  name: "SGD"
  alias: 
  provider: 
  provider_id: "MIR:00100033"
  sort_score: "6"
  primary: "true"
  forward: "https://www.yeastgenome.org/locus/${ac}"
  redirect: "https://www.yeastgenome.org/locus/$id"
  description: "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."
  subject: "genome; eukaryotic; nucleotide"
  location: "USA"
  synonym: "Saccharomyces Genome Database"
  institution: "Stanford University"
  prefixed: "false"
  test: "S000003909"
  probe: "https://www.yeastgenome.org/locus/S000003909"
  pattern: "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$"
  state: "94:Up"
  more: "https://www.yeastgenome.org/"

bioentitylink/sgd:
  type: "scheme"
  name: "SGD through BioEntity Link"
  alias: 
  provider: "bioentitylink"
  provider_id: "MIR:00100892"
  sort_score: "4"
  primary: "false"
  forward: "https://bioentity.link/#/lexicon/public/${ac}"
  redirect: "https://bioentity.link/#/lexicon/public/$id"
  description: "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."
  subject: "genome; eukaryotic; nucleotide"
  location: "USA"
  synonym: "Saccharomyces Genome Database"
  institution: "InSilico Inc, in Eugene, Oregon"
  prefixed: "false"
  test: "S000003909"
  probe: "https://bioentity.link/#/lexicon/public/S000003909"
  pattern: "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$"
  state: "0:Unknown"
  more: "https://bioentity.link/"

agr/sgd:
  type: "scheme"
  name: "SGD through the Alliance of Genome Resources"
  alias: 
  provider: "agr"
  provider_id: "MIR:00100906"
  sort_score: "4"
  primary: "false"
  forward: "https://www.alliancegenome.org/gene/SGD:${ac}"
  redirect: "https://www.alliancegenome.org/gene/SGD:$id"
  description: "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."
  subject: "genome; eukaryotic; nucleotide"
  location: "USA"
  synonym: "Saccharomyces Genome Database"
  institution: "Alliance of Genome Resources"
  prefixed: "false"
  test: "S000003909"
  probe: "https://www.alliancegenome.org/gene/SGD:S000003909"
  pattern: "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$"
  state: "0:Unknown"
  more: "https://www.alliancegenome.org"

z024/sgd:
  type: "scheme"
  name: "Bio2RDF"
  alias: 
  provider: "z024"
  provider_id: "MIR:00100703"
  sort_score: "1"
  primary: "false"
  forward: "http://sgd.bio2rdf.org/describe/?url=http://bio2rdf.org/sgd:${ac}"
  redirect: "http://sgd.bio2rdf.org/describe/?url=http://bio2rdf.org/sgd:$id"
  description: "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."
  subject: "genome; eukaryotic; nucleotide"
  location: 
  synonym: "Saccharomyces Genome Database"
  institution: "Bio2RDF.org"
  prefixed: "false"
  test: "S000003909"
  probe: "http://sgd.bio2rdf.org/describe/?url=http://bio2rdf.org/sgd:S000003909"
  pattern: "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$"
  state: "58:Down"
  more: "http://sgd.bio2rdf.org/fct"

sbo:
  type: "scheme"
  name: "SBO"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100034"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/sbo/main/SBO:${ac}"
  redirect: "https://www.ebi.ac.uk/sbo/main/SBO:$id"
  description: "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort."
  subject: "ontology"
  location: "UK"
  synonym: "SBO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000262"
  probe: "https://www.ebi.ac.uk/sbo/main/SBO:0000262"
  pattern: "^SBO:\\d{7}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/sbo/"

ebi/sbo:
  type: "synonym"
  for: "sbo"

bptl/sbo:
  type: "scheme"
  name: "SBO through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100242"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/SBO/SBO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/SBO/SBO:$id"
  description: "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort."
  subject: "ontology"
  location: "USA"
  synonym: "SBO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0000262"
  probe: "http://purl.bioontology.org/ontology/SBO/SBO:0000262"
  pattern: "^SBO:\\d{7}$"
  state: "90:Up"
  more: "http://bioportal.bioontology.org/ontologies/SBO"

ols/sbo:
  type: "scheme"
  name: "SBO through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100176"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/sbo/terms?obo_id=SBO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/sbo/terms?obo_id=SBO:$id"
  description: "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort."
  subject: "ontology"
  location: "UK"
  synonym: "SBO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000262"
  probe: "https://www.ebi.ac.uk/ols/ontologies/sbo/terms?obo_id=SBO:0000262"
  pattern: "^SBO:\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/sbo"

kegg.drug:
  type: "scheme"
  name: "KEGG DRUG Database"
  alias: 
  provider: 
  provider_id: "MIR:00100035"
  sort_score: "6"
  primary: "true"
  forward: "https://www.kegg.jp/entry/${ac}"
  redirect: "https://www.kegg.jp/entry/$id"
  description: "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules."
  subject: "structure; drug"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "D00123"
  probe: "https://www.kegg.jp/entry/D00123"
  pattern: "^D\\d+$"
  state: "100:Up"
  more: "https://www.genome.jp/kegg/drug/"

kegg.glycan:
  type: "scheme"
  name: "KEGG GLYCAN Database"
  alias: 
  provider: 
  provider_id: "MIR:00100036"
  sort_score: "6"
  primary: "true"
  forward: "https://www.kegg.jp/entry/${ac}"
  redirect: "https://www.kegg.jp/entry/$id"
  description: "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways."
  subject: "polysaccharide; structure"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "G00123"
  probe: "https://www.kegg.jp/entry/G00123"
  pattern: "^G\\d+$"
  state: "99:Up"
  more: "https://www.genome.jp/kegg/glycan/"

wb:
  type: "scheme"
  name: "WormBase"
  alias: 
  provider: 
  provider_id: "MIR:00100038"
  sort_score: "6"
  primary: "true"
  forward: "https://www.wormbase.org/get?name=${ac}"
  redirect: "https://www.wormbase.org/get?name=$id"
  description: "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities."
  subject: "expression; genome; protein; nucleotide"
  location: "UK"
  synonym: "KEGG"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "WBGene00000001"
  probe: "https://www.wormbase.org/get?name=WBGene00000001"
  pattern: "^WB[A-Z][a-z]+\\d+$"
  state: "99:Up"
  more: "https://www.wormbase.org/"

bioentitylink/wb:
  type: "scheme"
  name: "WormBase through BioEntity Link"
  alias: 
  provider: "bioentitylink"
  provider_id: "MIR:00100890"
  sort_score: "4"
  primary: "false"
  forward: "https://bioentity.link/#/lexicon/public/${ac}"
  redirect: "https://bioentity.link/#/lexicon/public/$id"
  description: "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities."
  subject: "expression; genome; protein; nucleotide"
  location: "USA"
  synonym: "KEGG"
  institution: "InSilico Inc, in Eugene, Oregon"
  prefixed: "false"
  test: "WBGene00021291"
  probe: "https://bioentity.link/#/lexicon/public/WBGene00021291"
  pattern: "^WB[A-Z][a-z]+\\d+$"
  state: "0:Unknown"
  more: "https://bioentity.link/"

agr/wb:
  type: "scheme"
  name: "WormBase through the Alliance of Genome Resources"
  alias: 
  provider: "agr"
  provider_id: "MIR:00100901"
  sort_score: "4"
  primary: "false"
  forward: "https://www.alliancegenome.org/gene/WB:${ac}"
  redirect: "https://www.alliancegenome.org/gene/WB:$id"
  description: "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities."
  subject: "expression; genome; protein; nucleotide"
  location: "USA"
  synonym: "KEGG"
  institution: "Alliance of Genome Resources"
  prefixed: "false"
  test: "WBGene00000001"
  probe: "https://www.alliancegenome.org/gene/WB:WBGene00000001"
  pattern: "^WB[A-Z][a-z]+\\d+$"
  state: "0:Unknown"
  more: "https://www.alliancegenome.org"

pfam:
  type: "scheme"
  name: "Pfam at EMBL-EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100685"
  sort_score: "6"
  primary: "true"
  forward: "https://pfam.xfam.org/family/${ac}"
  redirect: "https://pfam.xfam.org/family/$id"
  description: "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored."
  subject: "domain; protein"
  location: "UK"
  synonym: "Protein Family Database"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "PF01234"
  probe: "https://pfam.xfam.org/family/PF01234"
  pattern: "^PF\\d{5}$"
  state: "100:Up"
  more: "https://pfam.xfam.org/"

ebi/pfam:
  type: "synonym"
  for: "pfam"

insdc:
  type: "scheme"
  name: "INSDC through Nucleotide database at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100490"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/nuccore/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/nuccore/$id"
  description: "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences."
  subject: "nucleotide; sequence"
  location: "USA"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "X58356"
  probe: "https://www.ncbi.nlm.nih.gov/nuccore/X58356"
  pattern: "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/nuccore/"

ncbi/insdc:
  type: "synonym"
  for: "insdc"

z025/insdc:
  type: "scheme"
  name: "INSDC through GenBank"
  alias: 
  provider: "z025"
  provider_id: "MIR:00100049"
  sort_score: "4"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/nuccore/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/nuccore/$id"
  description: "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences."
  subject: "nucleotide; sequence"
  location: "USA"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "X58356"
  probe: "https://www.ncbi.nlm.nih.gov/nuccore/X58356"
  pattern: "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/Genbank/"

ebi/insdc:
  type: "scheme"
  name: "INSDC through European Nucleotide Archive (ENA)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100487"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ena/data/view/${ac}"
  redirect: "https://www.ebi.ac.uk/ena/data/view/$id"
  description: "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences."
  subject: "nucleotide; sequence"
  location: "UK"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "X58356"
  probe: "https://www.ebi.ac.uk/ena/data/view/X58356"
  pattern: "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/ena/"

z026/insdc:
  type: "scheme"
  name: "INSDC through DDBJ"
  alias: 
  provider: "z026"
  provider_id: "MIR:00100066"
  sort_score: "1"
  primary: "false"
  forward: "http://getentry.ddbj.nig.ac.jp/getentry?database=ddbj&accession_number=${ac}"
  redirect: "http://getentry.ddbj.nig.ac.jp/getentry?database=ddbj&accession_number=$id"
  description: "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences."
  subject: "nucleotide; sequence"
  location: "Japan"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "DNA Data Bank of Japan, Mishima, Shizuoka"
  prefixed: "false"
  test: "X58356"
  probe: "http://getentry.ddbj.nig.ac.jp/getentry?database=ddbj&accession_number=X58356"
  pattern: "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"
  state: "97:Up"
  more: "http://www.ddbj.nig.ac.jp/"

fb:
  type: "scheme"
  name: "FlyBase through the Alliance of Genome Resources"
  alias: 
  provider: "agr"
  provider_id: "MIR:00100904"
  sort_score: "4"
  primary: "false"
  forward: "https://www.alliancegenome.org/gene/FB:${ac}"
  redirect: "https://www.alliancegenome.org/gene/FB:$id"
  description: "FlyBase is the database of the Drosophila Genome Projects and of associated literature."
  subject: "eukaryotic; genome; nucleotide"
  location: "USA"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "Alliance of Genome Resources"
  prefixed: "false"
  test: "FBgn0011293"
  probe: "https://www.alliancegenome.org/gene/FB:FBgn0011293"
  pattern: "^FB\\w{2}\\d{7}$"
  state: "0:Unknown"
  more: "https://www.alliancegenome.org"

agr/fb:
  type: "synonym"
  for: "fb"

z027/fb:
  type: "scheme"
  name: "The FlyBase Database"
  alias: 
  provider: "z027"
  provider_id: "MIR:00100050"
  sort_score: "4"
  primary: "false"
  forward: "http://flybase.org/reports/${ac}.html"
  redirect: "http://flybase.org/reports/$id.html"
  description: "FlyBase is the database of the Drosophila Genome Projects and of associated literature."
  subject: "eukaryotic; genome; nucleotide"
  location: "USA / United Kingdom"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "The FlyBase Consortium"
  prefixed: "false"
  test: "FBgn0011293"
  probe: "http://flybase.org/reports/FBgn0011293.html"
  pattern: "^FB\\w{2}\\d{7}$"
  state: "100:Up"
  more: "http://flybase.org/"

bioentitylink/fb:
  type: "scheme"
  name: "FlyBase through BioEntity Link"
  alias: 
  provider: "bioentitylink"
  provider_id: "MIR:00100893"
  sort_score: "4"
  primary: "false"
  forward: "https://bioentity.link/#/lexicon/public/${ac}"
  redirect: "https://bioentity.link/#/lexicon/public/$id"
  description: "FlyBase is the database of the Drosophila Genome Projects and of associated literature."
  subject: "eukaryotic; genome; nucleotide"
  location: "USA"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "InSilico Inc, in Eugene, Oregon"
  prefixed: "false"
  test: "FBgn0011293"
  probe: "https://bioentity.link/#/lexicon/public/FBgn0011293"
  pattern: "^FB\\w{2}\\d{7}$"
  state: "0:Unknown"
  more: "https://bioentity.link/"

wormpep:
  type: "scheme"
  name: "Wormpep (Master)"
  alias: 
  provider: 
  provider_id: "MIR:00100051"
  sort_score: "6"
  primary: "true"
  forward: "https://www.wormbase.org/db/seq/protein?name=WP:${ac}"
  redirect: "https://www.wormbase.org/db/seq/protein?name=WP:$id"
  description: "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project."
  subject: "genome; protein"
  location: "USA"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "Cold Spring Harbor Laboratory"
  prefixed: "false"
  test: "CE28239"
  probe: "https://www.wormbase.org/db/seq/protein?name=WP:CE28239"
  pattern: "^CE\\d{5}$"
  state: "88:Down"
  more: "https://www.wormbase.org/db/seq/protein"

prosite:
  type: "scheme"
  name: "ExPASy PROSITE"
  alias: 
  provider: "expasy"
  provider_id: "MIR:00100056"
  sort_score: "1"
  primary: "false"
  forward: "https://prosite.expasy.org/${ac}"
  redirect: "https://prosite.expasy.org/$id"
  description: "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them."
  subject: "domain; protein"
  location: "Switzerland"
  synonym: "GenBank; INSDC; International Nucleotide Sequence Database Collaboration; NCBI nucleotide"
  institution: "Swiss Institute of Bioinformatics (SIB)"
  prefixed: "false"
  test: "PS00001"
  probe: "https://prosite.expasy.org/PS00001"
  pattern: "^PS\\d{5}$"
  state: "96:Unknown"
  more: "https://www.expasy.org/prosite/"

expasy/prosite:
  type: "synonym"
  for: "prosite"

pubchem.substance:
  type: "scheme"
  name: "NCBI PubChem Substance"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100058"
  sort_score: "5"
  primary: "false"
  forward: "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=${ac}"
  redirect: "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=$id"
  description: "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records."
  subject: "chemical"
  location: "USA"
  synonym: "PubChem Substance; PubChem SID"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "100101"
  probe: "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=100101"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "https://pubchem.ncbi.nlm.nih.gov/"

ncbi/pubchem.substance:
  type: "synonym"
  for: "pubchem.substance"

pubchem.compound:
  type: "scheme"
  name: "NCBI PubChem Compound"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100059"
  sort_score: "5"
  primary: "false"
  forward: "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=${ac}"
  redirect: "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=$id"
  description: "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records."
  subject: "metabolite; chemical; structure"
  location: "USA"
  synonym: "PubChem CID; PubChem Compound"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "100101"
  probe: "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=100101"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "https://pubchem.ncbi.nlm.nih.gov/"

ncbi/pubchem.compound:
  type: "synonym"
  for: "pubchem.compound"

arxiv:
  type: "scheme"
  name: "Cornell University arXiv"
  alias: 
  provider: 
  provider_id: "MIR:00100060"
  sort_score: "4"
  primary: "false"
  forward: "https://arxiv.org/abs/${ac}"
  redirect: "https://arxiv.org/abs/$id"
  description: "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology."
  subject: "bibliography"
  location: "USA"
  synonym: "PubChem CID; PubChem Compound"
  institution: "Cornell University"
  prefixed: "false"
  test: "0807.4956v1"
  probe: "https://arxiv.org/abs/0807.4956v1"
  pattern: "^(\\w+(\\-\\w+)?(\\.\\w+)?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$"
  state: "96:Unknown"
  more: "https://arxiv.org/"

arrayexpress:
  type: "scheme"
  name: "ArrayExpress"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100061"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/arrayexpress/experiments/${ac}"
  redirect: "https://www.ebi.ac.uk/arrayexpress/experiments/$id"
  description: "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations."
  subject: "nucleotide; microarray; expression"
  location: "UK"
  synonym: "PubChem CID; PubChem Compound"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "E-MEXP-1712"
  probe: "https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-1712"
  pattern: "^[AEP]-\\w{4}-\\d+$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/arrayexpress/"

ebi/arrayexpress:
  type: "synonym"
  for: "arrayexpress"

omicsdi/arrayexpress:
  type: "scheme"
  name: "ArrayExpress through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100854"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/arrayexpress-repository/${ac}"
  redirect: "https://www.omicsdi.org/dataset/arrayexpress-repository/$id"
  description: "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations."
  subject: "nucleotide; microarray; expression"
  location: "UK"
  synonym: "PubChem CID; PubChem Compound"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "E-MEXP-1712"
  probe: "https://www.omicsdi.org/dataset/arrayexpress-repository/E-MEXP-1712"
  pattern: "^[AEP]-\\w{4}-\\d+$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

mgi:
  type: "scheme"
  name: "Mouse Genome Informatics Database"
  alias: 
  provider: 
  provider_id: "MIR:00100062"
  sort_score: "6"
  primary: "true"
  forward: "http://www.informatics.jax.org/accession/MGI:${ac}"
  redirect: "http://www.informatics.jax.org/accession/MGI:$id"
  description: "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data."
  subject: "expression; sequence; phenotype"
  location: "USA"
  synonym: "MGI; MGD; Mouse Genome Informatics"
  institution: "The Jackson Laboratory"
  prefixed: "true"
  test: "2442292"
  probe: "http://www.informatics.jax.org/accession/MGI:2442292"
  pattern: "^MGI:\\d+$"
  state: "99:Up"
  more: "http://www.informatics.jax.org/"

bioentitylink/mgi:
  type: "scheme"
  name: "MGD through BioEntity Link"
  alias: 
  provider: "bioentitylink"
  provider_id: "MIR:00100894"
  sort_score: "4"
  primary: "false"
  forward: "https://bioentity.link/#/lexicon/public/MGI:${ac}"
  redirect: "https://bioentity.link/#/lexicon/public/MGI:$id"
  description: "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data."
  subject: "expression; sequence; phenotype"
  location: "USA"
  synonym: "MGI; MGD; Mouse Genome Informatics"
  institution: "InSilico Inc, in Eugene, Oregon"
  prefixed: "true"
  test: "2442292"
  probe: "https://bioentity.link/#/lexicon/public/MGI:2442292"
  pattern: "^MGI:\\d+$"
  state: "0:Unknown"
  more: "https://bioentity.link/"

agr/mgi:
  type: "scheme"
  name: "MGI through the Alliance of Genome Resources"
  alias: 
  provider: "agr"
  provider_id: "MIR:00100903"
  sort_score: "4"
  primary: "false"
  forward: "https://www.alliancegenome.org/gene/MGI:${ac}"
  redirect: "https://www.alliancegenome.org/gene/MGI:$id"
  description: "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data."
  subject: "expression; sequence; phenotype"
  location: "USA"
  synonym: "MGI; MGD; Mouse Genome Informatics"
  institution: "Alliance of Genome Resources"
  prefixed: "true"
  test: "2442292"
  probe: "https://www.alliancegenome.org/gene/MGI:2442292"
  pattern: "^MGI:\\d+$"
  state: "0:Unknown"
  more: "https://www.alliancegenome.org"

sabiork.reaction:
  type: "scheme"
  name: "SABIO-RK reaction"
  alias: 
  provider: 
  provider_id: "MIR:00100063"
  sort_score: "1"
  primary: "false"
  forward: "http://sabiork.h-its.org/newSearch?q=sabioreactionid:${ac}"
  redirect: "http://sabiork.h-its.org/newSearch?q=sabioreactionid:$id"
  description: "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information."
  subject: "kinetics; reaction; pathway"
  location: "Germany"
  synonym: "MGI; MGD; Mouse Genome Informatics"
  institution: "Heidelberg Institute for Theoretical Studies  (HITS gGmbH)"
  prefixed: "false"
  test: "75"
  probe: "http://sabiork.h-its.org/newSearch?q=sabioreactionid:75"
  pattern: "^\\d+$"
  state: "98:Probably up"
  more: "http://sabiork.h-its.org/"

refseq:
  type: "scheme"
  name: "The NCBI Reference Sequence database"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100067"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/protein/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/protein/$id"
  description: "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products."
  subject: "mammalian; protein; annotation; sequence"
  location: "USA"
  synonym: "MGI; MGD; Mouse Genome Informatics"
  institution: "NCBI, NIH, Bethesda, Maryland"
  prefixed: "false"
  test: "NP_012345"
  probe: "https://www.ncbi.nlm.nih.gov/protein/NP_012345"
  pattern: "^((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\\d+|(NZ\\_[A-Z]{4}\\d+))(\\.\\d+)?$"
  state: "76:Down"
  more: "https://www.ncbi.nlm.nih.gov/projects/RefSeq/"

ncbi/refseq:
  type: "synonym"
  for: "refseq"

tcdb:
  type: "scheme"
  name: "TCDB"
  alias: 
  provider: 
  provider_id: "MIR:00100068"
  sort_score: "4"
  primary: "false"
  forward: "http://www.tcdb.org/search/result.php?tc=${ac}"
  redirect: "http://www.tcdb.org/search/result.php?tc=$id"
  description: "The database details a comprehensive  IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally."
  subject: "classification; interaction; protein"
  location: "USA"
  synonym: "TCDB"
  institution: "Division of Biological Sciences, UCSD"
  prefixed: "false"
  test: "5.A.1.1.1"
  probe: "http://www.tcdb.org/search/result.php?tc=5.A.1.1.1"
  pattern: "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$"
  state: "99:Up"
  more: "http://www.tcdb.org/"

uniparc:
  type: "scheme"
  name: "UniParc through UniProt"
  alias: 
  provider: 
  provider_id: "MIR:00100476"
  sort_score: "4"
  primary: "false"
  forward: "http://www.uniprot.org/uniparc/${ac}"
  redirect: "http://www.uniprot.org/uniparc/$id"
  description: "The UniProt Archive (UniParc) is a  database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases."
  subject: "protein"
  location: "USA, UK and Switzerland"
  synonym: "TCDB"
  institution: "UniProt Consortium"
  prefixed: "false"
  test: "UPI000000000A"
  probe: "http://www.uniprot.org/uniparc/UPI000000000A"
  pattern: "^UPI[A-F0-9]{10}$"
  state: "98:Up"
  more: "http://www.uniprot.org/uniparc/"

ebi/uniparc:
  type: "scheme"
  name: "UniProt Archive (UniParc)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100069"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=${ac}"
  redirect: "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$id"
  description: "The UniProt Archive (UniParc) is a  database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases."
  subject: "protein"
  location: "UK"
  synonym: "TCDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "UPI000000000A"
  probe: "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=UPI000000000A"
  pattern: "^UPI[A-F0-9]{10}$"
  state: "70:Down"
  more: "https://www.ebi.ac.uk/uniparc/"

mint:
  type: "scheme"
  name: "MINT subset through IntAct"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100654"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/intact/query/interaction_id:${ac}"
  redirect: "https://www.ebi.ac.uk/intact/query/interaction_id:$id"
  description: "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals."
  subject: "protein; interaction"
  location: "UK"
  synonym: "TCDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "MINT-7905142"
  probe: "https://www.ebi.ac.uk/intact/query/interaction_id:MINT-7905142"
  pattern: "^MINT\\-\\d{1,7}$"
  state: "94:Up"
  more: "https://www.ebi.ac.uk/intact/"

ebi/mint:
  type: "synonym"
  for: "mint"

z028/mint:
  type: "scheme"
  name: "The Molecular INTeraction database (MINT)"
  alias: 
  provider: "z028"
  provider_id: "MIR:00100070"
  sort_score: "1"
  primary: "false"
  forward: "http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=${ac}"
  redirect: "http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$id"
  description: "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals."
  subject: "protein; interaction"
  location: "Italy"
  synonym: "TCDB"
  institution: "University of Rome Tor Vergata, Rome"
  prefixed: "false"
  test: "MINT-10000"
  probe: "http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=MINT-10000"
  pattern: "^MINT\\-\\d{1,7}$"
  state: "66:Down"
  more: "http://mint.bio.uniroma2.it/mint/"

dip:
  type: "scheme"
  name: "Database of interacting proteins"
  alias: 
  provider: 
  provider_id: "MIR:00100072"
  sort_score: "4"
  primary: "false"
  forward: "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=${ac}"
  redirect: "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$id"
  description: "The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions"
  subject: "protein; interaction"
  location: "USA"
  synonym: "DIP"
  institution: "UCLA"
  prefixed: "false"
  test: "DIP-743N"
  probe: "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=DIP-743N"
  pattern: "^DIP(\\:)?\\-\\d{1,}[ENXS]$"
  state: "94:Unknown"
  more: "https://dip.doe-mbi.ucla.edu/"

signaling-gateway:
  type: "scheme"
  name: "Signaling Gateway Molecule Pages"
  alias: 
  provider: 
  provider_id: "MIR:00100073"
  sort_score: "4"
  primary: "false"
  forward: "http://www.signaling-gateway.org/molecule/query?afcsid=${ac}"
  redirect: "http://www.signaling-gateway.org/molecule/query?afcsid=$id"
  description: "The Signaling Gateway provides  information on  mammalian proteins involved in cellular signaling."
  subject: "mammalian; protein"
  location: "USA"
  synonym: "SGMP; Signaling Gateway Molecule Pages; UCSD - Molecule Pages; AfCS; UCSD Signaling Gateway Molecule Pages"
  institution: "UC San Diego"
  prefixed: "false"
  test: "A001094"
  probe: "http://www.signaling-gateway.org/molecule/query?afcsid=A001094"
  pattern: "A\\d{6}$"
  state: "96:Up"
  more: "http://www.signaling-gateway.org/molecule"

resid:
  type: "scheme"
  name: "RESID at Georgetown University"
  alias: 
  provider: 
  provider_id: "MIR:00100653"
  sort_score: "6"
  primary: "true"
  forward: "http://pir0.georgetown.edu/cgi-bin/resid?id=${ac}"
  redirect: "http://pir0.georgetown.edu/cgi-bin/resid?id=$id"
  description: "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications."
  subject: "protein; structure"
  location: "USA"
  synonym: "SGMP; Signaling Gateway Molecule Pages; UCSD - Molecule Pages; AfCS; UCSD Signaling Gateway Molecule Pages"
  institution: "Georgetown University Medical Center, Washington"
  prefixed: "false"
  test: "AA0001"
  probe: "http://pir0.georgetown.edu/cgi-bin/resid?id=AA0001"
  pattern: "^AA\\d{4}$"
  state: "100:Up"
  more: "http://pir0.georgetown.edu/resid/"

rgd:
  type: "scheme"
  name: "Rat Genome Database"
  alias: 
  provider: 
  provider_id: "MIR:00100075"
  sort_score: "6"
  primary: "true"
  forward: "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=${ac}"
  redirect: "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$id"
  description: "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes."
  subject: "annotation; phenotype; disease; eukaryotic; gene; sequence; nucleotide; genome; pathway; mammalian"
  location: "USA"
  synonym: "RGD"
  institution: "Medical College of Wisconsin"
  prefixed: "false"
  test: "2018"
  probe: "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=2018"
  pattern: "^\\d{4,}$"
  state: "100:Up"
  more: "http://rgd.mcw.edu/"

agr/rgd:
  type: "scheme"
  name: "RGD through the Alliance of Genome Resources"
  alias: 
  provider: "agr"
  provider_id: "MIR:00100905"
  sort_score: "4"
  primary: "false"
  forward: "https://www.alliancegenome.org/gene/RGD:${ac}"
  redirect: "https://www.alliancegenome.org/gene/RGD:$id"
  description: "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes."
  subject: "annotation; phenotype; disease; eukaryotic; gene; sequence; nucleotide; genome; pathway; mammalian"
  location: "USA"
  synonym: "RGD"
  institution: "Alliance of Genome Resources"
  prefixed: "false"
  test: "2018"
  probe: "https://www.alliancegenome.org/gene/RGD:2018"
  pattern: "^\\d{4,}$"
  state: "0:Unknown"
  more: "https://www.alliancegenome.org"

tair.protein:
  type: "scheme"
  name: "The Arabidopsis Information Resource (TAIR) Protein"
  alias: 
  provider: 
  provider_id: "MIR:00100076"
  sort_score: "4"
  primary: "false"
  forward: "http://arabidopsis.org/servlets/TairObject?accession=${ac}"
  redirect: "http://arabidopsis.org/servlets/TairObject?accession=$id"
  description: "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept"
  subject: "protein; genome; eukaryotic; plant"
  location: "USA"
  synonym: "RGD"
  institution: "Carnegie Institution of Washington Department of Plant Biology and National Center for Genome Resources (NCGR)"
  prefixed: "false"
  test: "AASequence:1009107926"
  probe: "http://arabidopsis.org/servlets/TairObject?accession=AASequence:1009107926"
  pattern: "^AASequence:\\d{10}$"
  state: "85:Down"
  more: "http://arabidopsis.org/index.jsp"

tair.gene:
  type: "scheme"
  name: "The Arabidopsis Information Resource (TAIR) Gene"
  alias: 
  provider: 
  provider_id: "MIR:00100077"
  sort_score: "4"
  primary: "false"
  forward: "http://arabidopsis.org/servlets/TairObject?accession=${ac}"
  redirect: "http://arabidopsis.org/servlets/TairObject?accession=$id"
  description: "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus."
  subject: "nucleotide; plant; gene; eukaryotic; genome"
  location: "USA"
  synonym: "RGD"
  institution: "Carnegie Institution of Washington Department of Plant Biology and National Center for Genome Resources (NCGR)"
  prefixed: "false"
  test: "Gene:2200934"
  probe: "http://arabidopsis.org/servlets/TairObject?accession=Gene:2200934"
  pattern: "^Gene:\\d{7}$"
  state: "85:Down"
  more: "http://arabidopsis.org/index.jsp"

tair.locus:
  type: "scheme"
  name: "The Arabidopsis Information Resource (TAIR) Locus"
  alias: 
  provider: 
  provider_id: "MIR:00100078"
  sort_score: "4"
  primary: "false"
  forward: "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:${ac}"
  redirect: "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$id"
  description: "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS."
  subject: "plant; genome; eukaryotic"
  location: "USA"
  synonym: "RGD"
  institution: "Carnegie Institution of Washington Department of Plant Biology and National Center for Genome Resources (NCGR)"
  prefixed: "false"
  test: "2200950"
  probe: "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:2200950"
  pattern: "^\\d{7}$"
  state: "74:Down"
  more: "http://arabidopsis.org/index.jsp"

hmdb:
  type: "scheme"
  name: "The Human Metabolome Database"
  alias: 
  provider: 
  provider_id: "MIR:00100079"
  sort_score: "1"
  primary: "false"
  forward: "http://www.hmdb.ca/metabolites/${ac}"
  redirect: "http://www.hmdb.ca/metabolites/$id"
  description: "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data."
  subject: "human; chemical; metabolite"
  location: "Canada "
  synonym: "Human Metabolome Database"
  institution: "University of Alberta, Edmonton, AB"
  prefixed: "false"
  test: "HMDB00001"
  probe: "http://www.hmdb.ca/metabolites/HMDB00001"
  pattern: "^HMDB\\d+$"
  state: "99:Up"
  more: "http://www.hmdb.ca/"

lipidmaps:
  type: "scheme"
  name: "Department of Bioengineering and the San Diego Supercomputer Center"
  alias: 
  provider: 
  provider_id: "MIR:00100080"
  sort_score: "4"
  primary: "false"
  forward: "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=${ac}"
  redirect: "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$id"
  description: "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy."
  subject: "structure; taxonomy; lipid"
  location: "USA"
  synonym: "LMSD"
  institution: "University of California, San Diego"
  prefixed: "false"
  test: "LMPR0102010012"
  probe: "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=LMPR0102010012"
  pattern: "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$"
  state: "100:Up"
  more: "http://www.lipidmaps.org"

peptideatlas:
  type: "scheme"
  name: "PeptideAtlas at ISB"
  alias: 
  provider: 
  provider_id: "MIR:00100081"
  sort_score: "6"
  primary: "true"
  forward: "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=${ac}"
  redirect: "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$id"
  description: "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools."
  subject: "mass spectrometry"
  location: "USA"
  synonym: "LMSD"
  institution: "Institute for Systems Biology, Seattle"
  prefixed: "false"
  test: "PAp00000009"
  probe: "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=PAp00000009"
  pattern: "^PAp[0-9]{8}$"
  state: "94:Down"
  more: "http://www.peptideatlas.org/"

geo:
  type: "scheme"
  name: "Gene Expression Omnibus at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100082"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$id"
  description: "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval."
  subject: "microarray; expression; nucleotide"
  location: "USA"
  synonym: "Gene Expression Omnibus"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "GDS1234"
  probe: "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GDS1234"
  pattern: "^G(PL|SM|SE|DS)\\d+$"
  state: "85:Up"
  more: "https://www.ncbi.nlm.nih.gov/geo/"

ncbi/geo:
  type: "synonym"
  for: "geo"

eco:
  type: "scheme"
  name: "Evidence Code Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100235"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/ECO/ECO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/ECO/ECO:$id"
  description: "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity."
  subject: "classification"
  location: "USA"
  synonym: "ECO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0000006"
  probe: "http://purl.bioontology.org/ontology/ECO/ECO:0000006"
  pattern: "ECO:\\d{7}$"
  state: "67:Up"
  more: "http://bioportal.bioontology.org/ontologies/ECO"

bptl/eco:
  type: "synonym"
  for: "eco"

ols/eco:
  type: "scheme"
  name: "Evidence Codes via the Ontology Lookup Service (OLS)"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100083"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/eco/terms?obo_id=ECO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/eco/terms?obo_id=ECO:$id"
  description: "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity."
  subject: "classification"
  location: "UK"
  synonym: "ECO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000006"
  probe: "https://www.ebi.ac.uk/ols/ontologies/eco/terms?obo_id=ECO:0000006"
  pattern: "ECO:\\d{7}$"
  state: "76:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/eco"

mod:
  type: "scheme"
  name: "Protein modifications ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100239"
  sort_score: "4"
  primary: "false"
  forward: "http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:${ac}"
  redirect: "http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:$id"
  description: "The Proteomics Standards Initiative modification ontology (PSI-MOD)  aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications."
  subject: "ontology; protein"
  location: "USA"
  synonym: "MOD; PSI-MOD"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "00001"
  probe: "http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:00001"
  pattern: "^MOD:\\d{5}"
  state: "98:Up"
  more: "http://bioportal.bioontology.org/ontologies/PSIMOD"

bptl/mod:
  type: "synonym"
  for: "mod"

ols/mod:
  type: "scheme"
  name: "Protein modifications ontology via the Ontology Lookup Service (OLS)"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100084"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/mod/terms?obo_id=MOD:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/mod/terms?obo_id=MOD:$id"
  description: "The Proteomics Standards Initiative modification ontology (PSI-MOD)  aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications."
  subject: "ontology; protein"
  location: "UK"
  synonym: "MOD; PSI-MOD"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "00001"
  probe: "https://www.ebi.ac.uk/ols/ontologies/mod/terms?obo_id=MOD:00001"
  pattern: "^MOD:\\d{5}"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/mod"

sgd.pathways:
  type: "scheme"
  name: "Saccharomyces cerevisiae pathways at SGD."
  alias: 
  provider: 
  provider_id: "MIR:00100085"
  sort_score: "4"
  primary: "false"
  forward: "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=${ac}"
  redirect: "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$id"
  description: "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD)."
  subject: "genome; sequence; pathway"
  location: "USA"
  synonym: "MOD; PSI-MOD"
  institution: "SGD, Stanford University"
  prefixed: "false"
  test: "PWY3O-214"
  probe: "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=PWY3O-214"
  pattern: "^PWY\\w{2}\\-\\d{3}$"
  state: "97:Up"
  more: "http://pathway.yeastgenome.org/"

biogrid:
  type: "scheme"
  name: "BioGRID database of physical and genetic interactions"
  alias: 
  provider: 
  provider_id: "MIR:00100086"
  sort_score: "1"
  primary: "false"
  forward: "http://thebiogrid.org/${ac}"
  redirect: "http://thebiogrid.org/$id"
  description: "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."
  subject: "interaction; protein; gene"
  location: "Canada"
  synonym: "MOD; PSI-MOD"
  institution: "Ontario Cancer Institute"
  prefixed: "false"
  test: "31623"
  probe: "http://thebiogrid.org/31623"
  pattern: "^\\d+$"
  state: "85:Up"
  more: "http://thebiogrid.org/"

merops:
  type: "scheme"
  name: "MEROPS database at Sanger Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100087"
  sort_score: "1"
  primary: "false"
  forward: "http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=${ac}"
  redirect: "http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=$id"
  description: "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them."
  subject: "protein; enzyme"
  location: "United Kingdom"
  synonym: "MOD; PSI-MOD"
  institution: "Wellcome Trust Sanger Institute"
  prefixed: "false"
  test: "S01.001"
  probe: "http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=S01.001"
  pattern: "^[SCTAGMNU]\\d{2}\\.([AB]\\d{2}|\\d{3})$"
  state: "77:Down"
  more: "http://merops.sanger.ac.uk/index.htm"

panther.family:
  type: "scheme"
  name: "PANTHER Family at USC (Los Angeles)"
  alias: 
  provider: 
  provider_id: "MIR:00100088"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pantherdb.org/panther/family.do?clsAccession=${ac}"
  redirect: "http://www.pantherdb.org/panther/family.do?clsAccession=$id"
  description: "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families."
  subject: "gene"
  location: "USA"
  synonym: "MOD; PSI-MOD"
  institution: "Keck School of Medicine, University of Southern California"
  prefixed: "false"
  test: "PTHR12345"
  probe: "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12345"
  pattern: "^PTHR\\d{5}(\\:SF\\d{1,3})?$"
  state: "97:Probably up"
  more: "http://www.pantherdb.org/"

prints:
  type: "scheme"
  name: "PRINTS through SPRINT"
  alias: 
  provider: 
  provider_id: "MIR:00100089"
  sort_score: "1"
  primary: "false"
  forward: "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=${ac}&display_opts=Prints&category=None&queryform=false&regexpr=off"
  redirect: "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$id&display_opts=Prints&category=None&queryform=false&regexpr=off"
  description: "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours."
  subject: "protein; domain"
  location: "United Kingdom"
  synonym: "SPRINT"
  institution: "University of Manchester"
  prefixed: "false"
  test: "PR00001"
  probe: "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=PR00001&display_opts=Prints&category=None&queryform=false&regexpr=off"
  pattern: "^PR\\d{5}$"
  state: "97:Up"
  more: "http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/"

ligandexpo:
  type: "scheme"
  name: "Ligand Expo at Rutgers"
  alias: 
  provider: 
  provider_id: "MIR:00100615"
  sort_score: "4"
  primary: "false"
  forward: "http://ligand-expo.rcsb.org/pyapps/ldHandler.py?formid=cc-index-search&target=${ac}&operation=ccid"
  redirect: "http://ligand-expo.rcsb.org/pyapps/ldHandler.py?formid=cc-index-search&target=$id&operation=ccid"
  description: "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids."
  subject: "interaction; structure"
  location: "USA"
  synonym: "Ligand Depot"
  institution: "Rutgers, The State University of New Jersey"
  prefixed: "false"
  test: "ABC"
  probe: "http://ligand-expo.rcsb.org/pyapps/ldHandler.py?formid=cc-index-search&target=ABC&operation=ccid"
  pattern: "^(\\w){3}$"
  state: "98:Up"
  more: "http://ligand-expo.rcsb.org/"

rcsb/ligandexpo:
  type: "scheme"
  name: "Ligand Expo at RutgersRCSB PDB"
  alias: 
  provider: "rcsb"
  provider_id: "MIR:00100090"
  sort_score: "4"
  primary: "false"
  forward: "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=${ac}&operation=ccid"
  redirect: "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$id&operation=ccid"
  description: "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids."
  subject: "interaction; structure"
  location: "USA"
  synonym: "Ligand Depot"
  institution: "Rutgers, The State University of New Jersey"
  prefixed: "false"
  test: "ABC"
  probe: "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=ABC&operation=ccid"
  pattern: "^(\\w){3}$"
  state: "98:Up"
  more: "http://ligand-depot.rutgers.edu/index.html"

mge:
  type: "scheme"
  name: "Aclame database of mobile genetic elements"
  alias: 
  provider: 
  provider_id: "MIR:00100091"
  sort_score: "1"
  primary: "false"
  forward: "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:${ac}"
  redirect: "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$id"
  description: "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons."
  subject: "gene"
  location: "Belgium"
  synonym: "Ligand Depot"
  institution: "Service de Conformation de Macromol&#xE9;cules Biologiques et de Bioinformatique, Universit&#xE9; Libre de Bruxelles"
  prefixed: "true"
  test: "2"
  probe: "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:2"
  pattern: "^mge:\\d+$"
  state: "96:Up"
  more: "http://aclame.ulb.ac.be/"

isbn:
  type: "scheme"
  name: "ISBNDB - ISBN Database"
  alias: 
  provider: 
  provider_id: "MIR:00100092"
  sort_score: "4"
  primary: "false"
  forward: "http://isbndb.com/search-all.html?kw=${ac}"
  redirect: "http://isbndb.com/search-all.html?kw=$id"
  description: "The International Standard Book Number (ISBN) is for identifying printed books."
  subject: "bibliography"
  location: "USA"
  synonym: "Ligand Depot"
  institution: "ISNBdb project, San Gabriel, California"
  prefixed: "false"
  test: "9781584885658"
  probe: "http://isbndb.com/search-all.html?kw=9781584885658"
  pattern: "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$"
  state: "80:Down"
  more: "http://isbndb.com/"

z029/isbn:
  type: "scheme"
  name: "ISBN database at WorldCat"
  alias: 
  provider: "z029"
  provider_id: "MIR:00100093"
  sort_score: "4"
  primary: "false"
  forward: "http://www.worldcat.org/isbn/${ac}"
  redirect: "http://www.worldcat.org/isbn/$id"
  description: "The International Standard Book Number (ISBN) is for identifying printed books."
  subject: "bibliography"
  location: "USA"
  synonym: "Ligand Depot"
  institution: "OCLC Online Computer Library Center, Inc. Ohio"
  prefixed: "false"
  test: "9781584885658"
  probe: "http://www.worldcat.org/isbn/9781584885658"
  pattern: "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$"
  state: "79:Down"
  more: "http://www.worldcat.org/"

pride:
  type: "scheme"
  name: "PRIDE at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100094"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/pride/archive/assays/${ac}"
  redirect: "https://www.ebi.ac.uk/pride/archive/assays/$id"
  description: "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays."
  subject: "protein"
  location: "UK"
  synonym: "Ligand Depot"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "1"
  probe: "https://www.ebi.ac.uk/pride/archive/assays/1"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "https://www.ebi.ac.uk/pride/"

ebi/pride:
  type: "synonym"
  for: "pride"

3dmet:
  type: "scheme"
  name: "3DMET database"
  alias: 
  provider: 
  provider_id: "MIR:00100095"
  sort_score: "1"
  primary: "false"
  forward: "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=${ac}"
  redirect: "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$id"
  description: "3DMET is a database collecting three-dimensional structures of natural metabolites."
  subject: "structure; metabolite; chemical"
  location: "Japan"
  synonym: "Ligand Depot"
  institution: "Bioinformatics Research Unit, National Institute of Agrobiological Sciences"
  prefixed: "false"
  test: "B00162"
  probe: "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=B00162"
  pattern: "^B\\d{5}$"
  state: "89:Up"
  more: "http://www.3dmet.dna.affrc.go.jp/"

fma:
  type: "scheme"
  name: "Foundational Model of Anatomy through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100236"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/FMA_subset/FMA:${ac}"
  redirect: "http://purl.bioontology.org/ontology/FMA_subset/FMA:$id"
  description: "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body.  Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy."
  subject: "ontology"
  location: "USA"
  synonym: "Foundational Model of Anatomy Ontology"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "67112"
  probe: "http://purl.bioontology.org/ontology/FMA_subset/FMA:67112"
  pattern: "^FMA:\\d+$"
  state: "91:Up"
  more: "http://bioportal.bioontology.org/ontologies/FMA"

bptl/fma:
  type: "synonym"
  for: "fma"

ols/fma:
  type: "scheme"
  name: "Foundational Model of Anatomy via Ontology Lookup Service (OLS)"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100097"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/fma/terms?obo_id=FMA:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/fma/terms?obo_id=FMA:$id"
  description: "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body.  Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy."
  subject: "ontology"
  location: "UK"
  synonym: "Foundational Model of Anatomy Ontology"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "67112"
  probe: "https://www.ebi.ac.uk/ols/ontologies/fma/terms?obo_id=FMA:67112"
  pattern: "^FMA:\\d+$"
  state: "98:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/fma/"

matrixdb.association:
  type: "scheme"
  name: "MatrixDB Association"
  alias: 
  provider: 
  provider_id: "MIR:00100098"
  sort_score: "6"
  primary: "true"
  forward: "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=${ac}&class=Association"
  redirect: "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$id&class=Association"
  description: "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations."
  subject: "polysaccharide; interaction; lipid; protein"
  location: "France"
  synonym: "Foundational Model of Anatomy Ontology"
  institution: "Institut de Biologie et Chimie des Prot&#xE9;ines, Lyon University"
  prefixed: "false"
  test: "P00747__P07355"
  probe: "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=P00747__P07355&class=Association"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$"
  state: "74:Down"
  more: "http://matrixdb.univ-lyon1.fr/"

ncbigene:
  type: "scheme"
  name: "Entrez Gene (NCBI)"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100099"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ncbi.nlm.nih.gov/gene/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/gene/$id"
  description: "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis."
  subject: "sequence; genome; gene"
  location: "USA"
  synonym: "Entrez Gene"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "100010"
  probe: "https://www.ncbi.nlm.nih.gov/gene/100010"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/gene"

ncbi/ncbigene:
  type: "synonym"
  for: "ncbigene"

z030/ncbigene:
  type: "scheme"
  name: "Bio2RDF"
  alias: 
  provider: "z030"
  provider_id: "MIR:00100693"
  sort_score: "1"
  primary: "false"
  forward: "http://ncbigene.bio2rdf.org/describe/?url=http://bio2rdf.org/ncbigene:${ac}"
  redirect: "http://ncbigene.bio2rdf.org/describe/?url=http://bio2rdf.org/ncbigene:$id"
  description: "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis."
  subject: "sequence; genome; gene"
  location: 
  synonym: "Entrez Gene"
  institution: "Bio2RDF.org"
  prefixed: "false"
  test: "100010"
  probe: "http://ncbigene.bio2rdf.org/describe/?url=http://bio2rdf.org/ncbigene:100010"
  pattern: "^\\d+$"
  state: "60:Down"
  more: "http://ncbigene.bio2rdf.org/fct"

kegg.genes:
  type: "scheme"
  name: "KEGG GENES Database"
  alias: 
  provider: 
  provider_id: "MIR:00100100"
  sort_score: "6"
  primary: "true"
  forward: "http://www.kegg.jp/entry/${ac}"
  redirect: "http://www.kegg.jp/entry/$id"
  description: "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources."
  subject: "gene"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "syn:ssr3451"
  probe: "http://www.kegg.jp/entry/syn:ssr3451"
  pattern: "^\\w+:[\\w\\d\\.-]*$"
  state: "100:Up"
  more: "http://www.genome.jp/kegg/genes.html"

brenda:
  type: "scheme"
  name: "Brenda enzyme database"
  alias: 
  provider: 
  provider_id: "MIR:00100101"
  sort_score: "1"
  primary: "false"
  forward: "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=${ac}"
  redirect: "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$id"
  description: "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data."
  subject: "enzyme"
  location: "Germany"
  synonym: "KEGG"
  institution: "Technical University Braunschweig, Institute for Bioinformatics and Biochemistry"
  prefixed: "false"
  test: "1.1.1.1"
  probe: "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=1.1.1.1"
  pattern: "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$"
  state: "95:Unknown"
  more: "https://www.brenda-enzymes.org/"

pubchem.bioassay:
  type: "scheme"
  name: "PubChem Bioassay at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100102"
  sort_score: "5"
  primary: "false"
  forward: "https://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=${ac}"
  redirect: "https://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=$id"
  description: "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results."
  subject: "chemical"
  location: "USA"
  synonym: "KEGG"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "1018"
  probe: "https://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=1018"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "https://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay "

ncbi/pubchem.bioassay:
  type: "synonym"
  for: "pubchem.bioassay"

pathwaycommons:
  type: "scheme"
  name: "Pathway Commons"
  alias: 
  provider: 
  provider_id: "MIR:00100103"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pathwaycommons.org/pc/record2.do?id=${ac}"
  redirect: "http://www.pathwaycommons.org/pc/record2.do?id=$id"
  description: "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language."
  subject: "pathway"
  location: "USA"
  synonym: "KEGG"
  institution: "Memorial Sloan-Kettering Cancer Center"
  prefixed: "false"
  test: "485991"
  probe: "http://www.pathwaycommons.org/pc/record2.do?id=485991"
  pattern: "^\\d+$"
  state: "96:Up"
  more: "http://www.pathwaycommons.org/pc/"

hovergen:
  type: "scheme"
  name: "Hovergen"
  alias: 
  provider: 
  provider_id: "MIR:00100104"
  sort_score: "1"
  primary: "false"
  forward: "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=${ac}&db=HOVERGEN"
  redirect: "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$id&db=HOVERGEN"
  description: "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees."
  subject: "gene"
  location: "France"
  synonym: "KEGG"
  institution: "Laboratoire de Biom&#xE9;trie, G&#xE9;n&#xE9;tique et Biologie des Populations"
  prefixed: "false"
  test: "HBG004341"
  probe: "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=HBG004341&db=HOVERGEN"
  pattern: "^HBG\\d+$"
  state: "97:Up"
  more: "http://pbil.univ-lyon1.fr/databases/hovergen.php"

biomaps:
  type: "scheme"
  name: "main webpage"
  alias: 
  provider: 
  provider_id: "MIR:00100105"
  sort_score: "1"
  primary: "false"
  forward: "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=${ac}"
  redirect: "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$id"
  description: "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma."
  subject: "pathway"
  location: 
  synonym: "MMMP Biomaps"
  institution: "Melanoma Molecular Map Project"
  prefixed: "false"
  test: "37"
  probe: "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=37"
  pattern: "^\\d+$"
  state: "96:Up"
  more: "http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp"

wikipathways:
  type: "scheme"
  name: "Wikipathways"
  alias: 
  provider: 
  provider_id: "MIR:00100106"
  sort_score: "4"
  primary: "false"
  forward: "http://www.wikipathways.org/instance/${ac}"
  redirect: "http://www.wikipathways.org/instance/$id"
  description: "WikiPathways is a resource providing an open and public collection of  pathway maps created and curated by the community in a Wiki like style. All content is under the Creative Commons Attribution 3.0 Unported license."
  subject: "pathway"
  location: "Holland and USA"
  synonym: "MMMP Biomaps"
  institution: "BiGCaT Bioinformatics (University of Maastricht) and Conklin Lab (UCSF)."
  prefixed: "false"
  test: "WP100"
  probe: "http://www.wikipathways.org/instance/WP100"
  pattern: "WP\\d{1,5}(\\_r\\d+)?$"
  state: "94:Up"
  more: "http://www.wikipathways.org/"

macie:
  type: "scheme"
  name: "MACiE database of mechanisms, annotation and classification in enzymes"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100108"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=${ac}"
  redirect: "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$id"
  description: "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved."
  subject: "classification; enzyme"
  location: "UK"
  synonym: "MMMP Biomaps"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "M0001"
  probe: "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=M0001"
  pattern: "^M\\d{4}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html"

ebi/macie:
  type: "synonym"
  for: "macie"

mirbase:
  type: "scheme"
  name: "miRBase Sequence Database"
  alias: 
  provider: 
  provider_id: "MIR:00100135"
  sort_score: "2"
  primary: "false"
  forward: "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=${ac}"
  redirect: "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$id"
  description: "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR)."
  subject: "nucleotide; sequence"
  location: "UK"
  synonym: "MMMP Biomaps"
  institution: "Faculty of Life Sciences, University of Manchester "
  prefixed: "false"
  test: "MI0000001"
  probe: "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=MI0000001"
  pattern: "MI\\d{7}"
  state: "93:Down"
  more: "http://www.mirbase.org/"

zfin:
  type: "scheme"
  name: "ZFIN at University of Oregon"
  alias: 
  provider: 
  provider_id: "MIR:00100110"
  sort_score: "6"
  primary: "true"
  forward: "http://zfin.org/${ac}"
  redirect: "http://zfin.org/$id"
  description: "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN."
  subject: "gene"
  location: "USA"
  synonym: "MMMP Biomaps"
  institution: "Zebrafish Information Network, University of Oregon"
  prefixed: "false"
  test: "ZDB-GENE-041118-11"
  probe: "http://zfin.org/ZDB-GENE-041118-11"
  pattern: "^ZDB\\-\\w+\\-\\d+\\-\\d+$"
  state: "98:Up"
  more: "http://zfin.org"

agr/zfin:
  type: "scheme"
  name: "ZFIN through the Alliance of Genome Resources"
  alias: 
  provider: "agr"
  provider_id: "MIR:00100902"
  sort_score: "4"
  primary: "false"
  forward: "https://test.alliancegenome.org/gene/ZFIN:${ac}"
  redirect: "https://test.alliancegenome.org/gene/ZFIN:$id"
  description: "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN."
  subject: "gene"
  location: "USA"
  synonym: "MMMP Biomaps"
  institution: "Alliance of Genome Resources"
  prefixed: "false"
  test: "ZDB-GENE-041118-11"
  probe: "https://test.alliancegenome.org/gene/ZFIN:ZDB-GENE-041118-11"
  pattern: "^ZDB\\-\\w+\\-\\d+\\-\\d+$"
  state: "0:Unknown"
  more: "https://www.alliancegenome.org"

bioentitylink/zfin:
  type: "scheme"
  name: "ZFIN through BioEntity Link"
  alias: 
  provider: "bioentitylink"
  provider_id: "MIR:00100891"
  sort_score: "4"
  primary: "false"
  forward: "https://bioentity.link/#/lexicon/public/${ac}"
  redirect: "https://bioentity.link/#/lexicon/public/$id"
  description: "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN."
  subject: "gene"
  location: "USA"
  synonym: "MMMP Biomaps"
  institution: "InSilico Inc, in Eugene, Oregon"
  prefixed: "false"
  test: "ZDB-GENE-041118-11"
  probe: "https://bioentity.link/#/lexicon/public/ZDB-GENE-041118-11"
  pattern: "^ZDB\\-\\w+\\-\\d+\\-\\d+$"
  state: "0:Unknown"
  more: "https://bioentity.link/"

hgnc:
  type: "scheme"
  name: "HUGO Genome Nomenclature Committee"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100111"
  sort_score: "6"
  primary: "true"
  forward: "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/${ac}"
  redirect: "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$id"
  description: "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene.  All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database."
  subject: "schema.org; human; gene"
  location: "UK"
  synonym: "HUGO Gene Nomenclature Committee"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "2674"
  probe: "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/2674"
  pattern: "^((HGNC|hgnc):)?\\d{1,5}$"
  state: "94:Up"
  more: "https://www.genenames.org"

ebi/hgnc:
  type: "synonym"
  for: "hgnc"

so:
  type: "scheme"
  name: "Sequence Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100241"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/SO/SO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/SO/SO:$id"
  description: "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data."
  subject: "DNA; ontology"
  location: "USA"
  synonym: "SO; Sequence Types and Features"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0000704"
  probe: "http://purl.bioontology.org/ontology/SO/SO:0000704"
  pattern: "^SO:\\d{7}$"
  state: "94:Up"
  more: "http://bioportal.bioontology.org/ontologies/SO"

bptl/so:
  type: "synonym"
  for: "so"

z031/so:
  type: "scheme"
  name: "Sequence Ontology"
  alias: 
  provider: "z031"
  provider_id: "MIR:00100112"
  sort_score: "4"
  primary: "false"
  forward: "http://www.sequenceontology.org/miso/current_release/term/SO:${ac}"
  redirect: "http://www.sequenceontology.org/miso/current_release/term/SO:$id"
  description: "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data."
  subject: "DNA; ontology"
  location: "USA"
  synonym: "SO; Sequence Types and Features"
  institution: "Department of Molecular and Cellular Biology, University of California, Berkeley"
  prefixed: "true"
  test: "0000704"
  probe: "http://www.sequenceontology.org/miso/current_release/term/SO:0000704"
  pattern: "^SO:\\d{7}$"
  state: "97:Up"
  more: "http://www.sequenceontology.org/"

ols/so:
  type: "scheme"
  name: "Sequence Ontology through Ontology Lookup Service (OLS)"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100628"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/so/terms?obo_id=SO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/so/terms?obo_id=SO:$id"
  description: "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data."
  subject: "DNA; ontology"
  location: "UK"
  synonym: "SO; Sequence Types and Features"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000704"
  probe: "https://www.ebi.ac.uk/ols/ontologies/so/terms?obo_id=SO:0000704"
  pattern: "^SO:\\d{7}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/so"

rhea:
  type: "scheme"
  name: "Rhea"
  alias: 
  provider: 
  provider_id: "MIR:00100113"
  sort_score: "6"
  primary: "true"
  forward: "https://www.rhea-db.org/reaction?id=${ac}"
  redirect: "https://www.rhea-db.org/reaction?id=$id"
  description: "Rhea is a manually annotated reaction database, where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest), providing detailed information about structure, formulae and charge. It is populated with the reactions found in the EC list, IntEnz and ENZYME databases), as well as other biochemical reactions, including those that are often termed \"spontaneous\"."
  subject: "reaction"
  location: "UK"
  synonym: "SO; Sequence Types and Features"
  institution: "European Bioinformatics Institute and Swiss Institute of Bioinformatics"
  prefixed: "false"
  test: "12345"
  probe: "https://www.rhea-db.org/reaction?id=12345"
  pattern: "^\\d{5}$"
  state: "99:Up"
  more: "https://www.rhea-db.org/"

chembl.compound:
  type: "scheme"
  name: "ChEMBL compound database at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100115"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/chembl/compound/inspect/${ac}"
  redirect: "https://www.ebi.ac.uk/chembl/compound/inspect/$id"
  description: "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."
  subject: "chemical; metabolite"
  location: "UK"
  synonym: "SO; Sequence Types and Features"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "CHEMBL308052"
  probe: "https://www.ebi.ac.uk/chembl/compound/inspect/CHEMBL308052"
  pattern: "^CHEMBL\\d+$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/chembldb/"

ebi/chembl.compound:
  type: "synonym"
  for: "chembl.compound"

z032/chembl.compound:
  type: "scheme"
  name: "ChEMBL compound RDF through EBI RDF Platform"
  alias: 
  provider: "z032"
  provider_id: "MIR:00100744"
  sort_score: "2"
  primary: "false"
  forward: "https://rdf.ebi.ac.uk/resource/chembl/molecule/${ac}"
  redirect: "https://rdf.ebi.ac.uk/resource/chembl/molecule/$id"
  description: "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."
  subject: "chemical; metabolite"
  location: "UK"
  synonym: "SO; Sequence Types and Features"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "CHEMBL308052"
  probe: "https://rdf.ebi.ac.uk/resource/chembl/molecule/CHEMBL308052"
  pattern: "^CHEMBL\\d+$"
  state: "98:Probably up"
  more: "https://www.ebi.ac.uk/rdf/services/chembl/"

z033/chembl.compound:
  type: "scheme"
  name: "ChEMBL compound RDF"
  alias: 
  provider: "z033"
  provider_id: "MIR:00100484"
  sort_score: "1"
  primary: "false"
  forward: "http://linkedchemistry.info/chembl/chemblid/${ac}"
  redirect: "http://linkedchemistry.info/chembl/chemblid/$id"
  description: "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."
  subject: "chemical; metabolite"
  location: "The Netherlands"
  synonym: "SO; Sequence Types and Features"
  institution: "Maastricht University"
  prefixed: "false"
  test: "CHEMBL308052"
  probe: "http://linkedchemistry.info/chembl/chemblid/CHEMBL308052"
  pattern: "^CHEMBL\\d+$"
  state: "100:Up"
  more: "https://github.com/egonw/chembl.rdf"

chembl.target:
  type: "scheme"
  name: "ChEMBL targets database at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100116"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/chembl/target/inspect/${ac}"
  redirect: "https://www.ebi.ac.uk/chembl/target/inspect/$id"
  description: "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."
  subject: "protein"
  location: "UK"
  synonym: "SO; Sequence Types and Features"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "CHEMBL3467"
  probe: "https://www.ebi.ac.uk/chembl/target/inspect/CHEMBL3467"
  pattern: "^CHEMBL\\d+$"
  state: "94:Down"
  more: "https://www.ebi.ac.uk/chembldb/"

ebi/chembl.target:
  type: "synonym"
  for: "chembl.target"

z034/chembl.target:
  type: "scheme"
  name: "ChEMBL target RDF through EBI RDF Platform"
  alias: 
  provider: "z034"
  provider_id: "MIR:00100743"
  sort_score: "2"
  primary: "false"
  forward: "https://rdf.ebi.ac.uk/resource/chembl/target/${ac}"
  redirect: "https://rdf.ebi.ac.uk/resource/chembl/target/$id"
  description: "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."
  subject: "protein"
  location: "UK"
  synonym: "SO; Sequence Types and Features"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "CHEMBL3467"
  probe: "https://rdf.ebi.ac.uk/resource/chembl/target/CHEMBL3467"
  pattern: "^CHEMBL\\d+$"
  state: "98:Probably up"
  more: "https://rdf.ebi.ac.uk/resource/chembl/"

z035/chembl.target:
  type: "scheme"
  name: "ChEMBL target RDF"
  alias: 
  provider: "z035"
  provider_id: "MIR:00100485"
  sort_score: "1"
  primary: "false"
  forward: "http://linkedchemistry.info/chembl/chemblid/${ac}"
  redirect: "http://linkedchemistry.info/chembl/chemblid/$id"
  description: "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."
  subject: "protein"
  location: "The Netherlands"
  synonym: "SO; Sequence Types and Features"
  institution: "Maastricht University"
  prefixed: "false"
  test: "CHEMBL3467"
  probe: "http://linkedchemistry.info/chembl/chemblid/CHEMBL3467"
  pattern: "^CHEMBL\\d+$"
  state: "100:Up"
  more: "https://github.com/egonw/chembl.rdf"

sabiork.kineticrecord:
  type: "scheme"
  name: "SABIO-RK Reaction Kinetics Database - Kinetic Dataset"
  alias: 
  provider: 
  provider_id: "MIR:00100117"
  sort_score: "1"
  primary: "false"
  forward: "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=${ac}"
  redirect: "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$id"
  description: "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information."
  subject: "reaction; kinetics"
  location: "Germany"
  synonym: "SO; Sequence Types and Features"
  institution: "Heidelberg Institute for Theoretical Studies  (HITS gGmbH)"
  prefixed: "false"
  test: "5046"
  probe: "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=5046"
  pattern: "^\\d+$"
  state: "99:Probably up"
  more: "http://sabiork.h-its.org/"

lgic:
  type: "scheme"
  name: "Ligand-Gated Ion Channel database at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100118"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/${ac}.php"
  redirect: "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$id.php"
  description: "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available."
  subject: "protein; sequence; gene"
  location: "UK"
  synonym: "LGICdb"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "5HT3Arano"
  probe: "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/5HT3Arano.php"
  pattern: "^\\w+$"
  state: "87:Down"
  more: "https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php"

ebi/lgic:
  type: "synonym"
  for: "lgic"

atc:
  type: "scheme"
  name: "Anatomical Therapeutic Chemical Index at WHO"
  alias: 
  provider: 
  provider_id: "MIR:00100119"
  sort_score: "1"
  primary: "false"
  forward: "http://www.whocc.no/atc_ddd_index/?code=${ac}"
  redirect: "http://www.whocc.no/atc_ddd_index/?code=$id"
  description: "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels;  Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level).  The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels."
  subject: "drug; classification"
  location: "Switzerland"
  synonym: "ATC"
  institution: "World Health Organisation"
  prefixed: "false"
  test: "A10BA02"
  probe: "http://www.whocc.no/atc_ddd_index/?code=A10BA02"
  pattern: "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$"
  state: "85:Up"
  more: "http://www.whocc.no/atc_ddd_index/"

pharmgkb.pathways:
  type: "scheme"
  name: "PharmGKB at Stanford"
  alias: 
  provider: 
  provider_id: "MIR:00100120"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pharmgkb.org/pathway/${ac}"
  redirect: "http://www.pharmgkb.org/pathway/$id"
  description: "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.  PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies."
  subject: "pathway; pharmacogenomics"
  location: "USA"
  synonym: "ATC"
  institution: "Department of Genetics, School of Medicine, Stanford University, Stanford, California"
  prefixed: "false"
  test: "PA146123006"
  probe: "http://www.pharmgkb.org/pathway/PA146123006"
  pattern: "^PA\\d+$"
  state: "68:Down"
  more: "http://www.pharmgkb.org/"

pharmgkb.disease:
  type: "scheme"
  name: "PharmGKB Disease at Stanford"
  alias: 
  provider: 
  provider_id: "MIR:00100121"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pharmgkb.org/disease/${ac}"
  redirect: "http://www.pharmgkb.org/disease/$id"
  description: "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."
  subject: "pharmacogenomics"
  location: "USA"
  synonym: "ATC"
  institution: "Department of Genetics, School of Medicine, Stanford University, Stanford, California"
  prefixed: "false"
  test: "PA447218"
  probe: "http://www.pharmgkb.org/disease/PA447218"
  pattern: "^PA\\d+$"
  state: "68:Down"
  more: "http://www.pharmgkb.org/"

pharmgkb.drug:
  type: "scheme"
  name: "PharmGKB Drug at Stanford"
  alias: 
  provider: 
  provider_id: "MIR:00100122"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pharmgkb.org/drug/${ac}"
  redirect: "http://www.pharmgkb.org/drug/$id"
  description: "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."
  subject: "pharmacogenomics; drug"
  location: "USA"
  synonym: "ATC"
  institution: "Department of Genetics, School of Medicine, Stanford University, Stanford, California"
  prefixed: "false"
  test: "PA448710"
  probe: "http://www.pharmgkb.org/drug/PA448710"
  pattern: "^PA\\d+$"
  state: "67:Down"
  more: "http://www.pharmgkb.org/"

ttd.drug:
  type: "scheme"
  name: "Therapeutic Target Database Drug"
  alias: 
  provider: 
  provider_id: "MIR:00100123"
  sort_score: "1"
  primary: "false"
  forward: "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=${ac}"
  redirect: "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$id"
  description: "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."
  subject: "structure; drug"
  location: "Singapore"
  synonym: "Therapeutic Target Database"
  institution: "Computational Science Department, National University of Singapore"
  prefixed: "false"
  test: "DAP000773"
  probe: "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=DAP000773"
  pattern: "^DAP\\d+$"
  state: "91:Up"
  more: "http://bidd.nus.edu.sg/group/ttd/ttd.asp"

ttd.target:
  type: "scheme"
  name: "Therapeutic Target Database Target"
  alias: 
  provider: 
  provider_id: "MIR:00100124"
  sort_score: "1"
  primary: "false"
  forward: "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=${ac}"
  redirect: "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$id"
  description: "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."
  subject: "pathway; drug"
  location: "Singapore"
  synonym: "Therapeutic Target Database"
  institution: "Computational Science Department, National University of Singapore"
  prefixed: "false"
  test: "TTDS00056"
  probe: "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=TTDS00056"
  pattern: "^TTDS\\d+$"
  state: "92:Up"
  more: "http://bidd.nus.edu.sg/group/ttd/ttd.asp"

neurondb:
  type: "scheme"
  name: "NeuronDB at SenseLab"
  alias: 
  provider: 
  provider_id: "MIR:00100125"
  sort_score: "4"
  primary: "false"
  forward: "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=${ac}"
  redirect: "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$id"
  description: "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments."
  subject: "neuroscience"
  location: "USA"
  synonym: "Therapeutic Target Database"
  institution: "Yale University School of Medicine"
  prefixed: "false"
  test: "265"
  probe: "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=265"
  pattern: "^\\d+$"
  state: "71:Down"
  more: "http://senselab.med.yale.edu/NeuronDB/"

neuromorpho:
  type: "scheme"
  name: "NeuroMorpho"
  alias: 
  provider: 
  provider_id: "MIR:00100126"
  sort_score: "4"
  primary: "false"
  forward: "http://neuromorpho.org/neuron_info.jsp?neuron_name=${ac}"
  redirect: "http://neuromorpho.org/neuron_info.jsp?neuron_name=$id"
  description: "NeuroMorpho.Org is a centrally curated inventory of  digitally reconstructed neurons."
  subject: "neuroscience"
  location: "USA"
  synonym: "Therapeutic Target Database"
  institution: "Krasnow Institute, Virginia"
  prefixed: "false"
  test: "Rosa2"
  probe: "http://neuromorpho.org/neuron_info.jsp?neuron_name=Rosa2"
  pattern: "^\\w+$"
  state: "98:Up"
  more: "http://neuromorpho.org/index.jsp"

chemidplus:
  type: "scheme"
  name: "ChemIDplus at National Library of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100127"
  sort_score: "4"
  primary: "false"
  forward: "https://chem.nlm.nih.gov/chemidplus/rn/${ac}"
  redirect: "https://chem.nlm.nih.gov/chemidplus/rn/$id"
  description: "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest."
  subject: "structure; chemical"
  location: "USA"
  synonym: "Therapeutic Target Database"
  institution: "National Library of Medicine, Maryland"
  prefixed: "false"
  test: "57-27-2"
  probe: "https://chem.nlm.nih.gov/chemidplus/rn/57-27-2"
  pattern: "^\\d+\\-\\d+\\-\\d+$"
  state: "93:Unknown"
  more: "https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp"

biosystems:
  type: "scheme"
  name: "BioSystems database at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100128"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/biosystems/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/biosystems/$id"
  description: "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources."
  subject: "pathway; protein; gene"
  location: "USA"
  synonym: "Therapeutic Target Database"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "001"
  probe: "https://www.ncbi.nlm.nih.gov/biosystems/001"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/biosystems/"

ncbi/biosystems:
  type: "synonym"
  for: "biosystems"

ctd.chemical:
  type: "scheme"
  name: "Comparative Toxicogenomics Database (Chemical)"
  alias: 
  provider: 
  provider_id: "MIR:00100129"
  sort_score: "4"
  primary: "false"
  forward: "http://ctdbase.org/detail.go?type=chem&acc=${ac}"
  redirect: "http://ctdbase.org/detail.go?type=chem&acc=$id"
  description: "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."
  subject: "chemical; pharmacogenomics"
  location: "USA"
  synonym: "Therapeutic Target Database"
  institution: "The Mount Desert Island Biological Laboratory"
  prefixed: "false"
  test: "D001151"
  probe: "http://ctdbase.org/detail.go?type=chem&acc=D001151"
  pattern: "^[CD]\\d+$"
  state: "99:Up"
  more: "http://ctdbase.org/"

ctd.disease:
  type: "scheme"
  name: "Comparative Toxicogenomics Database (Disease)"
  alias: 
  provider: 
  provider_id: "MIR:00100130"
  sort_score: "4"
  primary: "false"
  forward: "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=${ac}"
  redirect: "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$id"
  description: "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."
  subject: "disease; pharmacogenomics"
  location: "USA"
  synonym: "Therapeutic Target Database"
  institution: "The Mount Desert Island Biological Laboratory"
  prefixed: "false"
  test: "D053716"
  probe: "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=D053716"
  pattern: "^D\\d+$"
  state: "99:Up"
  more: "http://ctdbase.org/"

ctd.gene:
  type: "scheme"
  name: "Comparative Toxicogenomics Database (Gene)"
  alias: 
  provider: 
  provider_id: "MIR:00100131"
  sort_score: "4"
  primary: "false"
  forward: "http://ctdbase.org/detail.go?type=gene&acc=${ac}"
  redirect: "http://ctdbase.org/detail.go?type=gene&acc=$id"
  description: "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."
  subject: "pharmacogenomics; gene"
  location: "USA"
  synonym: "Therapeutic Target Database"
  institution: "The Mount Desert Island Biological Laboratory"
  prefixed: "false"
  test: "101"
  probe: "http://ctdbase.org/detail.go?type=gene&acc=101"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://ctdbase.org/"

bionumbers:
  type: "scheme"
  name: "BioNumbers database"
  alias: 
  provider: 
  provider_id: "MIR:00100132"
  sort_score: "6"
  primary: "true"
  forward: "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=${ac}"
  redirect: "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$id"
  description: "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data."
  subject: "registry"
  location: "Israel"
  synonym: "Therapeutic Target Database"
  institution: "Weizmann Institute"
  prefixed: "false"
  test: "104674"
  probe: "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=104674"
  pattern: "^\\d+$"
  state: "96:Up"
  more: "https://bionumbers.hms.harvard.edu"

drugbank:
  type: "scheme"
  name: "DrugBank drug information"
  alias: 
  provider: 
  provider_id: "MIR:00100133"
  sort_score: "6"
  primary: "true"
  forward: "http://www.drugbank.ca/drugs/${ac}"
  redirect: "http://www.drugbank.ca/drugs/$id"
  description: "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information."
  subject: "protein; drug"
  location: "Canada"
  synonym: "Therapeutic Target Database"
  institution: "Departments of Computing Science & Biological Sciences,  University of Alberta"
  prefixed: "false"
  test: "DB00001"
  probe: "http://www.drugbank.ca/drugs/DB00001"
  pattern: "^DB\\d{5}$"
  state: "100:Up"
  more: "http://www.drugbank.ca/"

t3db:
  type: "scheme"
  name: "Toxin and Toxin Target Database"
  alias: 
  provider: 
  provider_id: "MIR:00100136"
  sort_score: "1"
  primary: "false"
  forward: "http://www.t3db.org/toxins/${ac}"
  redirect: "http://www.t3db.org/toxins/$id"
  description: "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information."
  subject: "drug; protein"
  location: "Canada"
  synonym: "Toxin and Toxin Target Database"
  institution: "University of Alberta"
  prefixed: "false"
  test: "T3D0001"
  probe: "http://www.t3db.org/toxins/T3D0001"
  pattern: "^T3D\\d+$"
  state: "99:Up"
  more: "http://www.t3db.org/"

smpdb:
  type: "scheme"
  name: "Small Molecule Pathway Database"
  alias: 
  provider: 
  provider_id: "MIR:00100137"
  sort_score: "1"
  primary: "false"
  forward: "http://smpdb.ca/view/${ac}"
  redirect: "http://smpdb.ca/view/$id"
  description: "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram."
  subject: "metabolite; pathway; human; chemical"
  location: "Canada"
  synonym: "SMPDB"
  institution: "University of Alberta, Edmonton, AB"
  prefixed: "false"
  test: "SMP00001"
  probe: "http://smpdb.ca/view/SMP00001"
  pattern: "^SMP\\d+$"
  state: "92:Up"
  more: "http://www.smpdb.ca/pathways"

phosphosite.protein:
  type: "scheme"
  name: "PhosphoSite"
  alias: 
  provider: 
  provider_id: "MIR:00100138"
  sort_score: "4"
  primary: "false"
  forward: "http://www.phosphosite.org/proteinAction.do?id=${ac}"
  redirect: "http://www.phosphosite.org/proteinAction.do?id=$id"
  description: "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database."
  subject: "mammalian; protein"
  location: "USA"
  synonym: "PhosphoSitePlus"
  institution: "Cell Signaling Technology, Inc."
  prefixed: "false"
  test: "12300"
  probe: "http://www.phosphosite.org/proteinAction.do?id=12300"
  pattern: "^\\d{5}$"
  state: "82:Down"
  more: "http://www.phosphosite.org/homeAction.do"

genedb:
  type: "scheme"
  name: "GeneDB at Sanger Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100139"
  sort_score: "2"
  primary: "false"
  forward: "https://www.genedb.org/gene/${ac}"
  redirect: "https://www.genedb.org/gene/$id"
  description: "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed."
  subject: "sequence; genome"
  location: "UK"
  synonym: "PhosphoSitePlus"
  institution: "Pathogen Genomics, Sanger Institute and European Bioinformatics Institute"
  prefixed: "false"
  test: "LinJ.20.0070"
  probe: "https://www.genedb.org/gene/LinJ.20.0070"
  pattern: "^[\\w\\d\\.-]*$"
  state: "94:Down"
  more: "https://www.genedb.org/"

biomodels.teddy:
  type: "scheme"
  name: "TEDDY through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100140"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/TEDDY/${ac}"
  redirect: "http://purl.bioontology.org/ontology/TEDDY/$id"
  description: "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology."
  subject: "ontology"
  location: "USA"
  synonym: "PhosphoSitePlus"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "TEDDY_0000066"
  probe: "http://purl.bioontology.org/ontology/TEDDY/TEDDY_0000066"
  pattern: "^TEDDY_\\d{7}$"
  state: "95:Up"
  more: "http://teddyontology.sourceforge.net/"

bptl/biomodels.teddy:
  type: "synonym"
  for: "biomodels.teddy"

ols/biomodels.teddy:
  type: "scheme"
  name: "TEDDY though OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100761"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?short_form=${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?short_form=$id"
  description: "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology."
  subject: "ontology"
  location: "UK"
  synonym: "PhosphoSitePlus"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "TEDDY_0000066"
  probe: "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?short_form=TEDDY_0000066"
  pattern: "^TEDDY_\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/teddy"

biomodels.kisao:
  type: "scheme"
  name: "KiSAO via NCBO's Bioportal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100141"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/KISAO/kisao:${ac}"
  redirect: "http://purl.bioontology.org/ontology/KISAO/kisao:$id"
  description: "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment."
  subject: 
  location: "USA"
  synonym: "Kinetic Simulation Algorithm Ontology"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "KISAO_0000057"
  probe: "http://purl.bioontology.org/ontology/KISAO/kisao:KISAO_0000057"
  pattern: "^KISAO_\\d+$"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/KISAO"

bptl/biomodels.kisao:
  type: "synonym"
  for: "biomodels.kisao"

ols/biomodels.kisao:
  type: "scheme"
  name: "KiSAO through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100757"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/kisao/terms?short_form=${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/kisao/terms?short_form=$id"
  description: "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment."
  subject: 
  location: "UK"
  synonym: "Kinetic Simulation Algorithm Ontology"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "KISAO_0000057"
  probe: "https://www.ebi.ac.uk/ols/ontologies/kisao/terms?short_form=KISAO_0000057"
  pattern: "^KISAO_\\d+$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/kisao"

psimi:
  type: "scheme"
  name: "Molecular Interactions Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100142"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:$id"
  description: "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative."
  subject: "ontology; interaction; protein"
  location: "UK"
  synonym: "MI"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0308"
  probe: "https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:0308"
  pattern: "^MI:\\d{4}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/mi"

ols/psimi:
  type: "synonym"
  for: "psimi"

cl:
  type: "scheme"
  name: "Cell Type Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100234"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/CL/CL:${ac}"
  redirect: "http://purl.bioontology.org/ontology/CL/CL:$id"
  description: "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi."
  subject: "ontology"
  location: "USA"
  synonym: "CL; Cell Ontology"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0000232"
  probe: "http://purl.bioontology.org/ontology/CL/CL:0000232"
  pattern: "^CL:\\d{7}$"
  state: "96:Up"
  more: "http://bioportal.bioontology.org/ontologies/CL"

bptl/cl:
  type: "synonym"
  for: "cl"

ols/cl:
  type: "scheme"
  name: "Cell Type Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100143"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:$id"
  description: "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi."
  subject: "ontology"
  location: "UK"
  synonym: "CL; Cell Ontology"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000232"
  probe: "https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:0000232"
  pattern: "^CL:\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/cl"

bto:
  type: "scheme"
  name: "Brenda Tissue Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100233"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/BTO/BTO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/BTO/BTO:$id"
  description: "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms."
  subject: "ontology"
  location: "USA"
  synonym: "BTO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0000146"
  probe: "http://purl.bioontology.org/ontology/BTO/BTO:0000146"
  pattern: "^BTO:\\d{7}$"
  state: "96:Up"
  more: "http://bioportal.bioontology.org/ontologies/BTO"

bptl/bto:
  type: "synonym"
  for: "bto"

ols/bto:
  type: "scheme"
  name: "Brenda Tissue Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100144"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/bto/terms?obo_id=BTO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/bto/terms?obo_id=BTO:$id"
  description: "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms."
  subject: "ontology"
  location: "UK"
  synonym: "BTO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000146"
  probe: "https://www.ebi.ac.uk/ols/ontologies/bto/terms?obo_id=BTO:0000146"
  pattern: "^BTO:\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/bto"

pato:
  type: "scheme"
  name: "PATO through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100238"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/PATO/PATO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/PATO/PATO:$id"
  description: "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype  annotation."
  subject: "phenotype; ontology"
  location: "USA"
  synonym: "BTO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0001998"
  probe: "http://purl.bioontology.org/ontology/PATO/PATO:0001998"
  pattern: "^PATO:\\d{7}$"
  state: "96:Up"
  more: "http://bioportal.bioontology.org/ontologies/PATO"

bptl/pato:
  type: "synonym"
  for: "pato"

ols/pato:
  type: "scheme"
  name: "PATO through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100145"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/pato/terms?obo_id=PATO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/pato/terms?obo_id=PATO:$id"
  description: "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype  annotation."
  subject: "phenotype; ontology"
  location: "UK"
  synonym: "BTO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0001998"
  probe: "https://www.ebi.ac.uk/ols/ontologies/pato/terms?obo_id=PATO:0001998"
  pattern: "^PATO:\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/pato"

pdb-ccd:
  type: "scheme"
  name: "Protein Data Bank Chemical Component Dictionary at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100146"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/${ac}"
  redirect: "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$id"
  description: "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names."
  subject: "chemical; classification"
  location: "UK"
  synonym: "PDB-CCD; PDBeChem"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "AB0"
  probe: "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/AB0"
  pattern: "^\\w{3}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/pdbe-srv/pdbechem/"

ebi/pdb-ccd:
  type: "synonym"
  for: "pdb-ccd"

glycomedb:
  type: "scheme"
  name: "GlycomeDB carbohydrate structure database"
  alias: 
  provider: 
  provider_id: "MIR:00100147"
  sort_score: "1"
  primary: "false"
  forward: "https://glytoucan.org/Structures/Glycans/${ac}"
  redirect: "https://glytoucan.org/Structures/Glycans/$id"
  description: "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links."
  subject: "structure"
  location: "Germany"
  synonym: "PDB-CCD; PDBeChem"
  institution: "German Cancer Research Center, Heidelberg"
  prefixed: "false"
  test: "G77500AY"
  probe: "https://glytoucan.org/Structures/Glycans/G77500AY"
  pattern: "^\\w+$"
  state: "78:Up"
  more: "https://glytoucan.org/"

lipidbank:
  type: "scheme"
  name: "LipidBank the Lipid database"
  alias: 
  provider: 
  provider_id: "MIR:00100148"
  sort_score: "1"
  primary: "false"
  forward: "http://lipidbank.jp/cgi-bin/detail.cgi?id=${ac}"
  redirect: "http://lipidbank.jp/cgi-bin/detail.cgi?id=$id"
  description: "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins."
  subject: "lipid; structure"
  location: "Japan"
  synonym: "PDB-CCD; PDBeChem"
  institution: "Department of Computational Biology, University of Tokyo, Tokyo"
  prefixed: "false"
  test: "BBA0001"
  probe: "http://lipidbank.jp/cgi-bin/detail.cgi?id=BBA0001"
  pattern: "^\\w+\\d+$"
  state: "100:Up"
  more: "http://lipidbank.jp/index.html"

kegg.orthology:
  type: "scheme"
  name: "KEGG Orthology Database"
  alias: 
  provider: 
  provider_id: "MIR:00100149"
  sort_score: "6"
  primary: "true"
  forward: "http://www.kegg.jp/entry/${ac}"
  redirect: "http://www.kegg.jp/entry/$id"
  description: "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms."
  subject: "pathway; clustering"
  location: "Japan"
  synonym: "KEGG"
  institution: "Department of Computational Biology, University of Tokyo, Tokyo"
  prefixed: "false"
  test: "K00001"
  probe: "http://www.kegg.jp/entry/K00001"
  pattern: "^K\\d+$"
  state: "100:Up"
  more: "http://www.genome.jp/kegg/ko.html"

prodom:
  type: "scheme"
  name: "ProDom Protein Domain Database"
  alias: 
  provider: 
  provider_id: "MIR:00100150"
  sort_score: "1"
  primary: "false"
  forward: "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=${ac}"
  redirect: "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$id"
  description: "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences."
  subject: "domain; protein"
  location: "France"
  synonym: "KEGG"
  institution: "Laboratoire des Interactions Plantes-Microorganismes, INRA/CNRS"
  prefixed: "false"
  test: "PD10000"
  probe: "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=PD10000"
  pattern: "^PD\\d+$"
  state: "94:Up"
  more: "http://prodom.prabi.fr/prodom/current/html/home.php"

smart:
  type: "scheme"
  name: "SMART (Simple Modular Architecture Research Tool)"
  alias: 
  provider: 
  provider_id: "MIR:00100151"
  sort_score: "1"
  primary: "false"
  forward: "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=${ac}"
  redirect: "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$id"
  description: "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures."
  subject: "protein; domain; gene"
  location: "Germany"
  synonym: "KEGG"
  institution: "EMBL, Heidelberg"
  prefixed: "false"
  test: "SM00015"
  probe: "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=SM00015"
  pattern: "^SM\\d{5}$"
  state: "100:Up"
  more: "http://smart.embl-heidelberg.de/"

cdd:
  type: "scheme"
  name: "Conserved Domain Database at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100152"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$id"
  description: "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution."
  subject: "protein; domain"
  location: "USA"
  synonym: "CDD"
  institution: "National Library of Medicine, National Institutes of Health, Maryland"
  prefixed: "false"
  test: "cd00400"
  probe: "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00400"
  pattern: "^(cd)?\\d{5}$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd"

ncbi/cdd:
  type: "synonym"
  for: "cdd"

ro:
  type: "scheme"
  name: "OBO Relation Ontology through OntoBee"
  alias: 
  provider: 
  provider_id: "MIR:00100764"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.obolibrary.org/obo/${ac}"
  redirect: "http://purl.obolibrary.org/obo/$id"
  description: "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies."
  subject: "ontology"
  location: "USA"
  synonym: "CDD"
  institution: "University of Michigan Medical School (MI), Lawrence Berkeley National Laboratory (CA) and Science Commons (MA)"
  prefixed: "false"
  test: "RO_0002533"
  probe: "http://purl.obolibrary.org/obo/RO_0002533"
  pattern: "^RO_\\d{7}$"
  state: "98:Up"
  more: "http://obofoundry.org/ontology/ro.html"

ols/ro:
  type: "scheme"
  name: "OBO Relation Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100767"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/ro/terms?short_form=${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/ro/terms?short_form=$id"
  description: "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies."
  subject: "ontology"
  location: "UK"
  synonym: "CDD"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "RO_0002533"
  probe: "https://www.ebi.ac.uk/ols/ontologies/ro/terms?short_form=RO_0002533"
  pattern: "^RO_\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/ro"

mmdb:
  type: "scheme"
  name: "MMDB at NCBI"
  alias: 
  provider: 
  provider_id: "MIR:00100154"
  sort_score: "4"
  primary: "false"
  forward: "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=${ac}"
  redirect: "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$id"
  description: "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites."
  subject: "protein; structure; domain"
  location: "USA"
  synonym: "Entrez Structure; MMDB"
  institution: "National Library of Medicine, National Institutes of Health, Maryland"
  prefixed: "false"
  test: "50885"
  probe: "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=50885"
  pattern: "^\\d{1,5}$"
  state: "84:Down"
  more: "http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure"

imex:
  type: "scheme"
  name: "IMEx Consortium running at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100155"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=${ac}"
  redirect: "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=$id"
  description: "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources."
  subject: "protein; interaction"
  location: "UK"
  synonym: "Entrez Structure; MMDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "IM-19210-3"
  probe: "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-19210-3"
  pattern: "^IM-\\d+(-?)(\\d+?)$"
  state: "96:Up"
  more: "https://www.imexconsortium.org/"

ebi/imex:
  type: "synonym"
  for: "imex"

z036/imex:
  type: "scheme"
  name: "IMEx Consortium though Intact"
  alias: 
  provider: "z036"
  provider_id: "MIR:00100663"
  sort_score: "2"
  primary: "false"
  forward: "https://imexcentral.org/icentral/imex/rec/${ac}"
  redirect: "https://imexcentral.org/icentral/imex/rec/$id"
  description: "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources."
  subject: "protein; interaction"
  location: "UK"
  synonym: "Entrez Structure; MMDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "IM-19210-3"
  probe: "https://imexcentral.org/icentral/imex/rec/IM-19210-3"
  pattern: "^IM-\\d+(-?)(\\d+?)$"
  state: "79:Down"
  more: "https://www.ebi.ac.uk/intact/"

irefweb:
  type: "scheme"
  name: "iRefWeb Protein Interaction Reference Index"
  alias: 
  provider: 
  provider_id: "MIR:00100156"
  sort_score: "1"
  primary: "false"
  forward: "http://wodaklab.org/iRefWeb/interaction/show/${ac}"
  redirect: "http://wodaklab.org/iRefWeb/interaction/show/$id"
  description: "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived."
  subject: "protein; interaction"
  location: "Canada"
  synonym: "Entrez Structure; MMDB"
  institution: "Wodak Lab, Hospital for Sick Children, Toronto"
  prefixed: "false"
  test: "617102"
  probe: "http://wodaklab.org/iRefWeb/interaction/show/617102"
  pattern: "^\\d+$"
  state: "96:Up"
  more: "http://wodaklab.org/iRefWeb/"

mpid:
  type: "scheme"
  name: "Microbial Protein Interaction Database"
  alias: 
  provider: 
  provider_id: "MIR:00100157"
  sort_score: "4"
  primary: "false"
  forward: "http://www.jcvi.org/mpidb/experiment.php?interaction_id=${ac}"
  redirect: "http://www.jcvi.org/mpidb/experiment.php?interaction_id=$id"
  description: "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts."
  subject: "microbial; protein; interaction"
  location: "USA"
  synonym: "MPID"
  institution: "J. Craig Venter Institute, Maryland"
  prefixed: "false"
  test: "172"
  probe: "http://www.jcvi.org/mpidb/experiment.php?interaction_id=172"
  pattern: "^\\d+$"
  state: "72:Down"
  more: "http://www.jcvi.org/mpidb/about.php"

ebi/mpid:
  type: "scheme"
  name: "Microbial Protein Interaction Database subset through IntAct"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100655"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-${ac}"
  redirect: "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-$id"
  description: "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts."
  subject: "microbial; protein; interaction"
  location: "UK"
  synonym: "MPID"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "1776"
  probe: "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-1776"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/intact/"

phosphosite.residue:
  type: "scheme"
  name: "PhosphoSite Residue"
  alias: 
  provider: 
  provider_id: "MIR:00100159"
  sort_score: "4"
  primary: "false"
  forward: "http://www.phosphosite.org/siteAction.do?id=${ac}"
  redirect: "http://www.phosphosite.org/siteAction.do?id=$id"
  description: "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence."
  subject: 
  location: "USA"
  synonym: "MPID"
  institution: "Cell Signaling Technology, Inc."
  prefixed: "false"
  test: "2842"
  probe: "http://www.phosphosite.org/siteAction.do?id=2842"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://www.phosphosite.org/homeAction.do"

neurolex:
  type: "scheme"
  name: "NeuroLex Neuroscience Lexicon"
  alias: 
  provider: 
  provider_id: "MIR:00100160"
  sort_score: "6"
  primary: "true"
  forward: "http://www.neurolex.org/wiki/${ac}"
  redirect: "http://www.neurolex.org/wiki/$id"
  description: "The NeuroLex project is a dynamic lexicon of terms used in neuroscience.  It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex)."
  subject: "neuroscience; ontology; controlled vocabulary"
  location: "USA"
  synonym: "BIRNLex; NIFSTD"
  institution: "Department of Neuroscience, University of California, San Diego"
  prefixed: "false"
  test: "Birnlex_721"
  probe: "http://www.neurolex.org/wiki/Birnlex_721"
  pattern: "^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\\d+$"
  state: "92:Up"
  more: "http://www.neurolex.org/wiki/Main_Page"

bptl/neurolex:
  type: "scheme"
  name: "NeuroLex through NCBO's BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100183"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/BIRNLEX/${ac}"
  redirect: "http://purl.bioontology.org/ontology/BIRNLEX/$id"
  description: "The NeuroLex project is a dynamic lexicon of terms used in neuroscience.  It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex)."
  subject: "neuroscience; ontology; controlled vocabulary"
  location: "USA"
  synonym: "BIRNLex; NIFSTD"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "birnlex_1672"
  probe: "http://purl.bioontology.org/ontology/BIRNLEX/birnlex_1672"
  pattern: "^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\\d+$"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/BIRNLEX"

obi:
  type: "scheme"
  name: "OBI through Ontobee"
  alias: 
  provider: 
  provider_id: "MIR:00100162"
  sort_score: "6"
  primary: "true"
  forward: "http://purl.obolibrary.org/obo/${ac}"
  redirect: "http://purl.obolibrary.org/obo/$id"
  description: "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)."
  subject: 
  location: "USA"
  synonym: "OBI"
  institution: "University of Michigan Medical School (MI), awrence Berkeley National Laboratory (CA) and Science Commons (MA)"
  prefixed: "false"
  test: "OBI_0000070"
  probe: "http://purl.obolibrary.org/obo/OBI_0000070"
  pattern: "(^OBI:\\d{7}$)|(^OBI_\\d{7}$)"
  state: "93:Up"
  more: "http://www.ontobee.org/"

bptl/obi:
  type: "scheme"
  name: "Ontology for Biomedical Investigations through Bioportal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100177"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/OBI/${ac}"
  redirect: "http://purl.bioontology.org/ontology/OBI/$id"
  description: "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)."
  subject: 
  location: "USA"
  synonym: "OBI"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "OBI:0000070"
  probe: "http://purl.bioontology.org/ontology/OBI/OBI:0000070"
  pattern: "(^OBI:\\d{7}$)|(^OBI_\\d{7}$)"
  state: "74:Probably up"
  more: "http://bioportal.bioontology.org/ontologies/OBI"

ols/obi:
  type: "scheme"
  name: "OBI through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100760"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/obi/terms?obo_id=${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/obi/terms?obo_id=$id"
  description: "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)."
  subject: 
  location: "UK"
  synonym: "OBI"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "OBI:0000070"
  probe: "https://www.ebi.ac.uk/ols/ontologies/obi/terms?obo_id=OBI:0000070"
  pattern: "(^OBI:\\d{7}$)|(^OBI_\\d{7}$)"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/obi"

sabiork.ec:
  type: "scheme"
  name: "SABIO-RK Reaction Kinetics Database - Enzyme Classification (EC)"
  alias: 
  provider: 
  provider_id: "MIR:00100163"
  sort_score: "1"
  primary: "false"
  forward: "http://sabiork.h-its.org/newSearch?q=ecnumber:${ac}"
  redirect: "http://sabiork.h-its.org/newSearch?q=ecnumber:$id"
  description: "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data."
  subject: "enzyme; kinetics; classification"
  location: "Germany"
  synonym: "SABIO-RK Enzyme Classification Record"
  institution: "Heidelberg Institute for Theoretical Studies (HITS gGmbH)"
  prefixed: "false"
  test: "2.7.1.1"
  probe: "http://sabiork.h-its.org/newSearch?q=ecnumber:2.7.1.1"
  pattern: "^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$"
  state: "99:Probably up"
  more: "http://sabiork.h-its.org/"

opb:
  type: "scheme"
  name: "Ontology of Physics for Biology through Bioportal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100167"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23${ac}"
  redirect: "http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23$id"
  description: "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms."
  subject: "ontology"
  location: "USA"
  synonym: "OPB"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "OPB_00573"
  probe: "http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_00573"
  pattern: "^OPB_\\d+$"
  state: "52:Down"
  more: "http://bioportal.bioontology.org/ontologies/OPB"

bptl/opb:
  type: "synonym"
  for: "opb"

jws:
  type: "scheme"
  name: "JWS Online Model Repository at Manchester"
  alias: 
  provider: 
  provider_id: "MIR:00100170"
  sort_score: "2"
  primary: "false"
  forward: "http://jjj.mib.ac.uk/models/${ac}"
  redirect: "http://jjj.mib.ac.uk/models/$id"
  description: "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser."
  subject: "model"
  location: "UK"
  synonym: "JWS"
  institution: "Manchester Interdisciplinary Biocentre, University of Manchester"
  prefixed: "false"
  test: "curien"
  probe: "http://jjj.mib.ac.uk/models/curien"
  pattern: "^\\w+$"
  state: "67:Down"
  more: "http://jjj.mib.ac.uk/index.html"

z037/jws:
  type: "scheme"
  name: "JWS Online Model Repository at Stellenbosch"
  alias: 
  provider: "z037"
  provider_id: "MIR:00100168"
  sort_score: "1"
  primary: "false"
  forward: "http://jjj.biochem.sun.ac.za/models/${ac}/"
  redirect: "http://jjj.biochem.sun.ac.za/models/$id/"
  description: "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser."
  subject: "model"
  location: "South Africa"
  synonym: "JWS"
  institution: "Department of Biochemistry, Stellenbosch University"
  prefixed: "false"
  test: "curien"
  probe: "http://jjj.biochem.sun.ac.za/models/curien/"
  pattern: "^\\w+$"
  state: "83:Down"
  more: "http://jjj.biochem.sun.ac.za/models/"

z038/jws:
  type: "scheme"
  name: "JWS Online Model Repository at Amsterdam"
  alias: 
  provider: "z038"
  provider_id: "MIR:00100169"
  sort_score: "1"
  primary: "false"
  forward: "http://jjj.bio.vu.nl/models/${ac}/"
  redirect: "http://jjj.bio.vu.nl/models/$id/"
  description: "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser."
  subject: "model"
  location: "Netherlands"
  synonym: "JWS"
  institution: "University of Amsterdam"
  prefixed: "false"
  test: "curien"
  probe: "http://jjj.bio.vu.nl/models/curien/"
  pattern: "^\\w+$"
  state: "60:Down"
  more: "http://jjj.bio.vu.nl/models/"

modeldb:
  type: "scheme"
  name: "ModelDB at SenseLab"
  alias: 
  provider: 
  provider_id: "MIR:00100171"
  sort_score: "4"
  primary: "false"
  forward: "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=${ac}"
  redirect: "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$id"
  description: "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment."
  subject: "model; neuroscience"
  location: "USA"
  synonym: "JWS"
  institution: "Yale University School of Medicine"
  prefixed: "false"
  test: "45539"
  probe: "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=45539"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://senselab.med.yale.edu/ModelDB/"

subtiwiki:
  type: "scheme"
  name: "SubtiWiki website"
  alias: 
  provider: 
  provider_id: "MIR:00100172"
  sort_score: "1"
  primary: "false"
  forward: "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/${ac}"
  redirect: "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$id"
  description: "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein.  Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon."
  subject: "protein; genome; microbial; gene"
  location: "Germany"
  synonym: "JWS"
  institution: "University of G&#xF6;ttingen, Department for General Microbiology"
  prefixed: "false"
  test: "BSU29180"
  probe: "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/BSU29180"
  pattern: "^BSU\\d{5}$"
  state: "99:Up"
  more: "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page"

pid.pathway:
  type: "scheme"
  name: "NCI Pathway Interaction Database (Pathway)"
  alias: 
  provider: 
  provider_id: "MIR:00100173"
  sort_score: "4"
  primary: "false"
  forward: "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=${ac}"
  redirect: "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$id"
  description: "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information."
  subject: "interaction; human; pathway"
  location: "USA"
  synonym: "NCI_Nature; PID; NCI_Nature curated; NCI-Nature PID; NCI-Nature Pathway Interaction Database; Pathway Interaction Database NCI-Nature Curated Data"
  institution: "National Cancer Institute, Rockville, Maryland"
  prefixed: "false"
  test: "pi3kcipathway"
  probe: "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=pi3kcipathway"
  pattern: "^\\w+$"
  state: "58:Down"
  more: "http://pid.nci.nih.gov/"

doqcs.model:
  type: "scheme"
  name: "Database of Quantitative Cellular Signaling (DOQCS) - Model Access"
  alias: 
  provider: 
  provider_id: "MIR:00100174"
  sort_score: "1"
  primary: "false"
  forward: "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=${ac}"
  redirect: "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$id"
  description: "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models."
  subject: "model"
  location: "India"
  synonym: "DOQCS Model"
  institution: "National Centre for Biological Sciences, Bangalore"
  prefixed: "false"
  test: "57"
  probe: "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=57"
  pattern: "^\\d+$"
  state: "94:Down"
  more: "http://doqcs.ncbs.res.in/"

doqcs.pathway:
  type: "scheme"
  name: "Database of Quantitative Cellular Signaling (DOQCS) - Pathway Access"
  alias: 
  provider: 
  provider_id: "MIR:00100175"
  sort_score: "1"
  primary: "false"
  forward: "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=${ac}"
  redirect: "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$id"
  description: "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways."
  subject: "pathway"
  location: "India"
  synonym: "DOQCS Pathway"
  institution: "National Centre for Biological Sciences, Bangalore"
  prefixed: "false"
  test: "131"
  probe: "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=131"
  pattern: "^\\d+$"
  state: "94:Down"
  more: "http://doqcs.ncbs.res.in/"

uo:
  type: "scheme"
  name: "Unit Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100243"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/UO/UO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/UO/UO:$id"
  description: "Ontology of standardized units"
  subject: "ontology"
  location: "USA"
  synonym: "UO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0000080"
  probe: "http://purl.bioontology.org/ontology/UO/UO:0000080"
  pattern: "^UO:\\d{7}?"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/UO"

bptl/uo:
  type: "synonym"
  for: "uo"

ols/uo:
  type: "scheme"
  name: "Unit Ontology via Ontology Lookup Service"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100178"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/uo/terms?obo_id=UO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/uo/terms?obo_id=UO:$id"
  description: "Ontology of standardized units"
  subject: "ontology"
  location: "UK"
  synonym: "UO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000080"
  probe: "https://www.ebi.ac.uk/ols/ontologies/uo/terms?obo_id=UO:0000080"
  pattern: "^UO:\\d{7}?"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/uo"

clinicaltrials:
  type: "scheme"
  name: "ClinicalTrials.gov at NIH"
  alias: 
  provider: 
  provider_id: "MIR:00100179"
  sort_score: "6"
  primary: "true"
  forward: "https://clinicaltrials.gov/ct2/show/${ac}"
  redirect: "https://clinicaltrials.gov/ct2/show/$id"
  description: "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries"
  subject: "disorder; disease; pharmacogenomics; human"
  location: "USA"
  synonym: "NCT"
  institution: "National Library of Medicine and ClinicalTrials.gov, Maryland"
  prefixed: "false"
  test: "NCT00222573"
  probe: "https://clinicaltrials.gov/ct2/show/NCT00222573"
  pattern: "^NCT\\d{8}$"
  state: "87:Unknown"
  more: "https://clinicaltrials.gov/"

chemspider:
  type: "scheme"
  name: "ChemSpider at RSC"
  alias: 
  provider: 
  provider_id: "MIR:00100180"
  sort_score: "2"
  primary: "false"
  forward: "http://www.chemspider.com/Chemical-Structure.${ac}.html"
  redirect: "http://www.chemspider.com/Chemical-Structure.$id.html"
  description: "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources."
  subject: "structure; chemical"
  location: "UK"
  synonym: "NCT"
  institution: "Royal Society of Chemistry, Cambridge"
  prefixed: "false"
  test: "56586"
  probe: "http://www.chemspider.com/Chemical-Structure.56586.html"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://www.chemspider.com/"

ncit:
  type: "scheme"
  name: "NCIt at National Cancer Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100181"
  sort_score: "4"
  primary: "false"
  forward: "http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=${ac}"
  redirect: "http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$id"
  description: "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code."
  subject: "controlled vocabulary; ontology"
  location: "USA"
  synonym: "National Cancer Institute Thesaurus; NCI thesaurus"
  institution: "National Cancer Institute, Center for Bioinformatics, Maryland"
  prefixed: "false"
  test: "C80519"
  probe: "http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=C80519"
  pattern: "^C\\d+$"
  state: "52:Down"
  more: "http://ncit.nci.nih.gov/"

ols/ncit:
  type: "scheme"
  name: "NCIt through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100868"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/ncit/terms?short_form=NCIT_${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/ncit/terms?short_form=NCIT_$id"
  description: "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code."
  subject: "controlled vocabulary; ontology"
  location: "UK"
  synonym: "National Cancer Institute Thesaurus; NCI thesaurus"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "C16353"
  probe: "https://www.ebi.ac.uk/ols/ontologies/ncit/terms?short_form=NCIT_C16353"
  pattern: "^C\\d+$"
  state: "0:Unknown"
  more: "https://www.ebi.ac.uk/ols/ontologies/ncit"

biocatalogue.service:
  type: "scheme"
  name: "BioCatalogue at EMBL-EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100182"
  sort_score: "2"
  primary: "false"
  forward: "https://www.biocatalogue.org/services/${ac}"
  redirect: "https://www.biocatalogue.org/services/$id"
  description: "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all."
  subject: "registry"
  location: "UK"
  synonym: "National Cancer Institute Thesaurus; NCI thesaurus"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "614"
  probe: "https://www.biocatalogue.org/services/614"
  pattern: "^\\d+$"
  state: "95:Up"
  more: "https://www.biocatalogue.org/"

ebi/biocatalogue.service:
  type: "synonym"
  for: "biocatalogue.service"

pr:
  type: "scheme"
  name: "Protein Ontology at Georgetown"
  alias: 
  provider: 
  provider_id: "MIR:00100184"
  sort_score: "4"
  primary: "false"
  forward: "https://proconsortium.org/app/entry/PR:${ac}"
  redirect: "https://proconsortium.org/app/entry/PR:$id"
  description: "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies."
  subject: "protein; ontology"
  location: "USA"
  synonym: "National Cancer Institute Thesaurus; NCI thesaurus"
  institution: "Georgetown University Medical Center, Washington"
  prefixed: "true"
  test: "000000024"
  probe: "https://proconsortium.org/app/entry/PR:000000024"
  pattern: "^PR\\:P?\\d+$"
  state: "77:Down"
  more: "https://proconsortium.org/"

bptl/pr:
  type: "scheme"
  name: "Protein Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100240"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/PR/PR:${ac}"
  redirect: "http://purl.bioontology.org/ontology/PR/PR:$id"
  description: "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies."
  subject: "protein; ontology"
  location: "USA"
  synonym: "National Cancer Institute Thesaurus; NCI thesaurus"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "000000024"
  probe: "http://purl.bioontology.org/ontology/PR/PR:000000024"
  pattern: "^PR\\:P?\\d+$"
  state: "72:Down"
  more: "http://bioportal.bioontology.org/ontologies/PR"

ols/pr:
  type: "scheme"
  name: "Protein Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100755"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/pr/terms?obo_id=PR:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/pr/terms?obo_id=PR:$id"
  description: "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies."
  subject: "protein; ontology"
  location: "UK"
  synonym: "National Cancer Institute Thesaurus; NCI thesaurus"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "000000024"
  probe: "https://www.ebi.ac.uk/ols/ontologies/pr/terms?obo_id=PR:000000024"
  pattern: "^PR\\:P?\\d+$"
  state: "79:Down"
  more: "https://www.ebi.ac.uk/ols/ontologies/pr"

omia:
  type: "scheme"
  name: "OMIA at University of Sydney"
  alias: 
  provider: 
  provider_id: "MIR:00100185"
  sort_score: "1"
  primary: "false"
  forward: "http://omia.angis.org.au/${ac}/"
  redirect: "http://omia.angis.org.au/$id/"
  description: "Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse)."
  subject: "phenotype; disorder"
  location: "Australia"
  synonym: "Online Mendelian Inheritance in Animals"
  institution: "Reprogen, Faculty of Veterinary Science, University of Sydney"
  prefixed: "false"
  test: "1000"
  probe: "http://omia.angis.org.au/1000/"
  pattern: "^\\d+$"
  state: "88:Down"
  more: "http://omia.angis.org.au/"

csa:
  type: "scheme"
  name: "CSA at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100188"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=${ac}"
  redirect: "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$id"
  description: "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme."
  subject: "structure; protein"
  location: "UK"
  synonym: "Catalytic Site Atlas"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "1a05"
  probe: "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=1a05"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "98:Up"
  more: "https://www.ebi.ac.uk/thornton-srv/databases/CSA/"

ebi/csa:
  type: "synonym"
  for: "csa"

cgd:
  type: "scheme"
  name: "Candida Genome Database at Stanford University"
  alias: 
  provider: 
  provider_id: "MIR:00100189"
  sort_score: "4"
  primary: "false"
  forward: "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=${ac}"
  redirect: "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$id"
  description: "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products."
  subject: "nucleotide; eukaryotic; genome"
  location: "USA"
  synonym: "CGD"
  institution: "Stanford University,"
  prefixed: "false"
  test: "CAL0003079"
  probe: "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=CAL0003079"
  pattern: "^CAL\\d{7}$"
  state: "100:Up"
  more: "http://www.candidagenome.org/"

antweb:
  type: "scheme"
  name: "AntWeb at California Academy of Sciences"
  alias: 
  provider: 
  provider_id: "MIR:00100190"
  sort_score: "4"
  primary: "false"
  forward: "http://www.antweb.org/specimen.do?name=${ac}"
  redirect: "http://www.antweb.org/specimen.do?name=$id"
  description: "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures."
  subject: "classification"
  location: "USA"
  synonym: "CGD"
  institution: "California Academy of Sciences, Goldengate Park, San Francisco"
  prefixed: "false"
  test: "casent0106247"
  probe: "http://www.antweb.org/specimen.do?name=casent0106247"
  pattern: "^casent\\d+(\\-D\\d+)?$"
  state: "97:Up"
  more: "http://www.antweb.org/"

pmc:
  type: "scheme"
  name: "Europe PMC"
  alias: 
  provider: "epmc"
  provider_id: "MIR:00100498"
  sort_score: "6"
  primary: "true"
  forward: "http://europepmc.org/articles/${ac}"
  redirect: "http://europepmc.org/articles/$id"
  description: "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature."
  subject: "schema.org; bibliography"
  location: "UK"
  synonym: "PubMed Central; PMCI"
  institution: "Europe PubMed Central partners"
  prefixed: "false"
  test: "PMC3084216"
  probe: "http://europepmc.org/articles/PMC3084216"
  pattern: "PMC\\d+"
  state: "100:Up"
  more: "http://europepmc.org/"

epmc/pmc:
  type: "synonym"
  for: "pmc"

ncbi/pmc:
  type: "scheme"
  name: "PubMed Central"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100191"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/pmc/articles/${ac}/?tool=pubmed"
  redirect: "https://www.ncbi.nlm.nih.gov/pmc/articles/$id/?tool=pubmed"
  description: "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature."
  subject: "schema.org; bibliography"
  location: "USA"
  synonym: "PubMed Central; PMCI"
  institution: "NCBI"
  prefixed: "false"
  test: "PMC3084216"
  probe: "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3084216/?tool=pubmed"
  pattern: "PMC\\d+"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/pmc/"

amoebadb:
  type: "scheme"
  name: "AmoebaDB at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100193"
  sort_score: "6"
  primary: "true"
  forward: "https://amoebadb.org/amoeba/app/record/gene/${ac}"
  redirect: "https://amoebadb.org/amoeba/app/record/gene/$id"
  description: "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "eukaryotic"
  location: "USA"
  synonym: "PubMed Central; PMCI"
  institution: "Center for Tropical & Emerging Global Diseases, University of Georgia"
  prefixed: "false"
  test: "EDI_244000"
  probe: "https://amoebadb.org/amoeba/app/record/gene/EDI_244000"
  pattern: "^EDI_\\d+$"
  state: "69:Unknown"
  more: "http://amoebadb.org/amoeba/"

cryptodb:
  type: "scheme"
  name: "CryptoDB at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100194"
  sort_score: "4"
  primary: "false"
  forward: "https://cryptodb.org/cryptodb/app/record/gene/${ac}"
  redirect: "https://cryptodb.org/cryptodb/app/record/gene/$id"
  description: "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "eukaryotic; genome"
  location: "USA"
  synonym: "PubMed Central; PMCI"
  institution: "Center for Tropical & Emerging Global Diseases, University of Georgia"
  prefixed: "false"
  test: "cgd7_230"
  probe: "https://cryptodb.org/cryptodb/app/record/gene/cgd7_230"
  pattern: "^\\w+"
  state: "68:Unknown"
  more: "https://cryptodb.org/cryptodb/"

plasmodb:
  type: "scheme"
  name: "PlasmoDB at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100195"
  sort_score: "4"
  primary: "false"
  forward: "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=${ac}"
  redirect: "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
  description: "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "genome; eukaryotic"
  location: "USA"
  synonym: "PubMed Central; PMCI"
  institution: "Center for Tropical & Emerging Global Diseases, University of Georgia"
  prefixed: "false"
  test: "PF11_0344"
  probe: "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=PF11_0344"
  pattern: "^\\w+$"
  state: "63:Down"
  more: "http://plasmodb.org/plasmo/"

giardiadb:
  type: "scheme"
  name: "GiardiaDB at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100196"
  sort_score: "4"
  primary: "false"
  forward: "https://giardiadb.org/giardiadb/app/record/gene/${ac}"
  redirect: "https://giardiadb.org/giardiadb/app/record/gene/$id"
  description: "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "genome; eukaryotic"
  location: "USA"
  synonym: "PubMed Central; PMCI"
  institution: "Center for Tropical & Emerging Global Diseases, University of Georgia"
  prefixed: "false"
  test: "GL50803_102438"
  probe: "https://giardiadb.org/giardiadb/app/record/gene/GL50803_102438"
  pattern: "^\\w+$"
  state: "68:Unknown"
  more: "https://giardiadb.org/giardiadb/"

microsporidia:
  type: "scheme"
  name: "MicrosporidiaDB at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100197"
  sort_score: "4"
  primary: "false"
  forward: "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=${ac}"
  redirect: "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
  description: "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "eukaryotic; genome"
  location: "USA"
  synonym: "PubMed Central; PMCI"
  institution: "Center for Tropical & Emerging Global Diseases, University of Georgia"
  prefixed: "false"
  test: "ECU03_0820i"
  probe: "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=ECU03_0820i"
  pattern: "^\\w+$"
  state: "63:Down"
  more: "http://microsporidiadb.org/micro/"

toxoplasma:
  type: "scheme"
  name: "ToxoDB at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100198"
  sort_score: "4"
  primary: "false"
  forward: "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=${ac}"
  redirect: "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
  description: "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "genome; eukaryotic"
  location: "USA"
  synonym: "PubMed Central; PMCI"
  institution: "Center for Tropical & Emerging Global Diseases, University of Georgia"
  prefixed: "false"
  test: "TGME49_053730"
  probe: "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TGME49_053730"
  pattern: "^\\w+$"
  state: "63:Down"
  more: "http://toxodb.org/toxo/"

trichdb:
  type: "scheme"
  name: "TrichDB at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100199"
  sort_score: "4"
  primary: "false"
  forward: "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=${ac}"
  redirect: "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
  description: "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "genome; eukaryotic"
  location: "USA"
  synonym: "PubMed Central; PMCI"
  institution: "Center for Tropical & Emerging Global Diseases, University of Georgia"
  prefixed: "false"
  test: "TVAG_386080"
  probe: "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TVAG_386080"
  pattern: "^\\w+$"
  state: "63:Down"
  more: "http://trichdb.org/trichdb/"

tritrypdb:
  type: "scheme"
  name: "TriTrypDB at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100200"
  sort_score: "2"
  primary: "false"
  forward: "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=${ac}"
  redirect: "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
  description: "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "eukaryotic; genome"
  location: "UK"
  synonym: "Kinetoplastid Genomics Resource"
  institution: "Wellcome Trust Sanger Institute, Hinxton"
  prefixed: "false"
  test: "Tb927.8.620"
  probe: "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=Tb927.8.620"
  pattern: "^\\w+(\\.)?\\w+(\\.)?\\w+"
  state: "57:Down"
  more: "http://tritrypdb.org/tritrypdb/"

bdgp.insertion:
  type: "scheme"
  name: "BDGP Gene Disruption Project"
  alias: 
  provider: 
  provider_id: "MIR:00100201"
  sort_score: "4"
  primary: "false"
  forward: "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=${ac}"
  redirect: "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$id"
  description: "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element."
  subject: "gene; sequence"
  location: "USA"
  synonym: "BDGP gene disruption"
  institution: "Baylor College of Medicine, Texas"
  prefixed: "false"
  test: "KG09531"
  probe: "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=KG09531"
  pattern: "^\\w+$"
  state: "95:Up"
  more: "http://flypush.imgen.bcm.tmc.edu/pscreen/"

beetlebase:
  type: "scheme"
  name: "BeetleBase at Kansas State University"
  alias: 
  provider: 
  provider_id: "MIR:00100202"
  sort_score: "4"
  primary: "false"
  forward: "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=${ac}"
  redirect: "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$id"
  description: "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications."
  subject: "classification"
  location: "USA"
  synonym: "BDGP gene disruption"
  institution: "Bioinformatics Center, Kansas State University"
  prefixed: "false"
  test: "TC010103"
  probe: "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=TC010103"
  pattern: "^TC\\d+$"
  state: "89:Up"
  more: "http://beetlebase.org/"

bold.taxonomy:
  type: "scheme"
  name: "BOLD taxonomy browser"
  alias: 
  provider: 
  provider_id: "MIR:00100203"
  sort_score: "1"
  primary: "false"
  forward: "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=${ac}"
  redirect: "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$id"
  description: "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information."
  subject: "classification"
  location: "Canada"
  synonym: "BDGP gene disruption"
  institution: "Canadian Centre for DNA Barcoding, Biodiversity Institute of Ontario"
  prefixed: "false"
  test: "27267"
  probe: "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=27267"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.boldsystems.org/"

dbest:
  type: "scheme"
  name: "dbEST at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100204"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/nucest/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/nucest/$id"
  description: "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms."
  subject: "gene; expression"
  location: "USA"
  synonym: "Database of Expressed Sequence Tags; NCBI EST"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "BP100000"
  probe: "https://www.ncbi.nlm.nih.gov/nucest/BP100000"
  pattern: "^([A-Z]+)?\\d+(\\.\\d+)?$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/nucest"

ncbi/dbest:
  type: "synonym"
  for: "dbest"

ebi/dbest:
  type: "scheme"
  name: "dbEST through European Nucleotide Archive (ENA)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100331"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ena/data/view/${ac}"
  redirect: "https://www.ebi.ac.uk/ena/data/view/$id"
  description: "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms."
  subject: "gene; expression"
  location: "UK"
  synonym: "Database of Expressed Sequence Tags; NCBI EST"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "BP100000.1"
  probe: "https://www.ebi.ac.uk/ena/data/view/BP100000.1"
  pattern: "^([A-Z]+)?\\d+(\\.\\d+)?$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/ena"

z039/dbest:
  type: "scheme"
  name: "dbEST through DNA Data Bank of Japan (DDBJ)"
  alias: 
  provider: "z039"
  provider_id: "MIR:00100651"
  sort_score: "1"
  primary: "false"
  forward: "http://getentry.ddbj.nig.ac.jp/getentry/na/${ac}"
  redirect: "http://getentry.ddbj.nig.ac.jp/getentry/na/$id"
  description: "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms."
  subject: "gene; expression"
  location: "Japan"
  synonym: "Database of Expressed Sequence Tags; NCBI EST"
  institution: "DNA Data Bank of Japan, Mishima, Shizuoka"
  prefixed: "false"
  test: "BP100000"
  probe: "http://getentry.ddbj.nig.ac.jp/getentry/na/BP100000"
  pattern: "^([A-Z]+)?\\d+(\\.\\d+)?$"
  state: "97:Up"
  more: "http://www.ddbj.nig.ac.jp/"

dbprobe:
  type: "scheme"
  name: "dbProbe at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100205"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/probe/?term=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/probe/?term=$id"
  description: "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities."
  subject: "nucleotide"
  location: "USA"
  synonym: "Database of Expressed Sequence Tags; NCBI EST"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "1000000"
  probe: "https://www.ncbi.nlm.nih.gov/probe/?term=1000000"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe"

ncbi/dbprobe:
  type: "synonym"
  for: "dbprobe"

dbsnp:
  type: "scheme"
  name: "dbSNP at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100206"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/snp/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/snp/$id"
  description: "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms."
  subject: "gene; nucleotide"
  location: "USA"
  synonym: "Database of Expressed Sequence Tags; NCBI EST"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "rs121909098"
  probe: "https://www.ncbi.nlm.nih.gov/snp/rs121909098"
  pattern: "^rs\\d+$"
  state: "99:Up"
  more: "https://www.ncbi.nlm.nih.gov/snp/"

ncbi/dbsnp:
  type: "synonym"
  for: "dbsnp"

sib/dbsnp:
  type: "scheme"
  name: "SNP2TFBS"
  alias: 
  provider: "sib"
  provider_id: "MIR:00100927"
  sort_score: "1"
  primary: "false"
  forward: "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=${ac}"
  redirect: "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$id"
  description: "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms."
  subject: "gene; nucleotide"
  location: "Switzerland"
  synonym: "Database of Expressed Sequence Tags; NCBI EST"
  institution: "SIB Swiss Institute of Bioinformatics"
  prefixed: "false"
  test: "rs11603840"
  probe: "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs11603840"
  pattern: "^rs\\d+$"
  state: "0:Unknown"
  more: "https://ccg.epfl.ch/snp2tfbs/"

unists:
  type: "scheme"
  name: "UniSTS at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100207"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$id"
  description: "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences."
  subject: "sequence; gene"
  location: "USA"
  synonym: "dbSTS"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "456789"
  probe: "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=456789"
  pattern: "^\\d+$"
  state: "96:Up"
  more: "https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists"

ncbi/unists:
  type: "synonym"
  for: "unists"

ecogene:
  type: "scheme"
  name: "EcoGene at University of Miami"
  alias: 
  provider: 
  provider_id: "MIR:00100208"
  sort_score: "6"
  primary: "true"
  forward: "http://www.ecogene.org/gene/${ac}"
  redirect: "http://www.ecogene.org/gene/$id"
  description: "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites."
  subject: "genome; microbial"
  location: "USA"
  synonym: "dbSTS"
  institution: "Miller School of Medicine, University of Miami"
  prefixed: "false"
  test: "EG10173"
  probe: "http://www.ecogene.org/gene/EG10173"
  pattern: "^EG\\d+$"
  state: "76:Down"
  more: "http://ecogene.org/"

gabi:
  type: "scheme"
  name: "GABI at Max Planck"
  alias: 
  provider: 
  provider_id: "MIR:00100210"
  sort_score: "6"
  primary: "true"
  forward: "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=${ac}&Mode=ShowBioObject"
  redirect: "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$id&Mode=ShowBioObject"
  description: "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'."
  subject: "plant; gene; genome"
  location: "Germany"
  synonym: "GABI PD"
  institution: "Max Planck Institute of Molecular Plant Physiology, Berlin"
  prefixed: "false"
  test: "2679240"
  probe: "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=2679240&Mode=ShowBioObject"
  pattern: "^\\w+$"
  state: "92:Up"
  more: "http://www.gabipd.org/"

greengenes:
  type: "scheme"
  name: "GreenGenes at Lawrence Berkeley"
  alias: 
  provider: 
  provider_id: "MIR:00100211"
  sort_score: "4"
  primary: "false"
  forward: "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=${ac}"
  redirect: "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$id"
  description: "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies."
  subject: "sequence"
  location: "USA"
  synonym: "GABI PD"
  institution: "Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, California"
  prefixed: "false"
  test: "100000"
  probe: "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=100000"
  pattern: "^\\d+$"
  state: "71:Down"
  more: "http://greengenes.lbl.gov/"

grin.taxonomy:
  type: "scheme"
  name: "GRIN at Maryland"
  alias: 
  provider: 
  provider_id: "MIR:00100212"
  sort_score: "4"
  primary: "false"
  forward: "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?${ac}"
  redirect: "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$id"
  description: "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact."
  subject: "taxonomy; plant"
  location: "USA"
  synonym: "GRIN Taxonomy for Plants; Germplasm Resources Information Network Plant Taxonomy"
  institution: "National Germplasm Resources Laboratory, Beltsville, Maryland"
  prefixed: "false"
  test: "19333"
  probe: "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?19333"
  pattern: "^\\d+$"
  state: "71:Down"
  more: "http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en"

hinv.locus:
  type: "scheme"
  name: "H-Invitational Locus View at BIRC"
  alias: 
  provider: 
  provider_id: "MIR:00100213"
  sort_score: "1"
  primary: "false"
  forward: "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=${ac}"
  redirect: "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$id"
  description: "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view."
  subject: "gene; human"
  location: "Japan"
  synonym: "GRIN Taxonomy for Plants; Germplasm Resources Information Network Plant Taxonomy"
  institution: "BIRC, Tokyo"
  prefixed: "false"
  test: "HIX0004394"
  probe: "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0004394"
  pattern: "^HIX\\d{7}(\\.\\d+)?$"
  state: "99:Up"
  more: "http://h-invitational.jp/hinv/ahg-db/index.jsp"

hinv.transcript:
  type: "scheme"
  name: "H-Invitational Transcript View at BIRC"
  alias: 
  provider: 
  provider_id: "MIR:00100214"
  sort_score: "1"
  primary: "false"
  forward: "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=${ac}"
  redirect: "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$id"
  description: "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view."
  subject: "human; expression"
  location: "Japan"
  synonym: "GRIN Taxonomy for Plants; Germplasm Resources Information Network Plant Taxonomy"
  institution: "BIRC, Tokyo"
  prefixed: "false"
  test: "HIT000195363"
  probe: "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195363"
  pattern: "^HIT\\d{9}(\\.\\d+)?$"
  state: "99:Up"
  more: "http://h-invitational.jp/hinv/ahg-db/index.jsp"

hinv.protein:
  type: "scheme"
  name: "H-Invitational Protein View at BIRC"
  alias: 
  provider: 
  provider_id: "MIR:00100215"
  sort_score: "1"
  primary: "false"
  forward: "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=${ac}"
  redirect: "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$id"
  description: "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view."
  subject: "protein; human"
  location: "Japan"
  synonym: "GRIN Taxonomy for Plants; Germplasm Resources Information Network Plant Taxonomy"
  institution: "BIRC, Tokyo"
  prefixed: "false"
  test: "HIP000030660"
  probe: "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=HIP000030660"
  pattern: "^HIP\\d{9}(\\.\\d+)?$"
  state: "99:Up"
  more: "http://h-invitational.jp/hinv/ahg-db/index.jsp"

homd.seq:
  type: "scheme"
  name: "HOMD sequence metainformation at The Forsyth Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100216"
  sort_score: "4"
  primary: "false"
  forward: "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=${ac}"
  redirect: "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$id"
  description: "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information."
  subject: "genome; microbial"
  location: "USA"
  synonym: "Human Oral Microbiome Database"
  institution: "The Forsyth Institute, Boston"
  prefixed: "false"
  test: "SEQF1003"
  probe: "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=SEQF1003"
  pattern: "^SEQF\\d+$"
  state: "100:Up"
  more: "http://www.homd.org/index.php"

homd.taxon:
  type: "scheme"
  name: "HOMD taxon information at The Forsyth Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100217"
  sort_score: "4"
  primary: "false"
  forward: "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=${ac}&view=dynamic"
  redirect: "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic"
  description: "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information."
  subject: "microbial; taxonomy"
  location: "USA"
  synonym: "Human Oral Microbiome Database"
  institution: "The Forsyth Institute, Boston"
  prefixed: "false"
  test: "811"
  probe: "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=811&view=dynamic"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://www.homd.org/index.php"

ird.segment:
  type: "scheme"
  name: "IRD at BioHealthBase"
  alias: 
  provider: 
  provider_id: "MIR:00100218"
  sort_score: "4"
  primary: "false"
  forward: "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=${ac}"
  redirect: "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$id"
  description: "Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope  and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s)."
  subject: "protein; gene"
  location: "USA"
  synonym: "Influenza Research Database Segment"
  institution: "Southwestern Medical Center, University of Texas, Dallas"
  prefixed: "false"
  test: "CY077097"
  probe: "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=CY077097"
  pattern: "^\\w+(\\_)?\\d+(\\.\\d+)?$"
  state: "97:Up"
  more: "http://www.fludb.org/"

isfinder:
  type: "scheme"
  name: "IS Finder at CNRS"
  alias: 
  provider: 
  provider_id: "MIR:00100219"
  sort_score: "1"
  primary: "false"
  forward: "https://www-is.biotoul.fr/scripts/ficheIS.php?name=${ac}"
  redirect: "https://www-is.biotoul.fr/scripts/ficheIS.php?name=$id"
  description: "ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available."
  subject: "gene; sequence"
  location: "France"
  synonym: "Insertion Sequence Finder"
  institution: "Laboratoire de Microbiologie et G&#xE9;n&#xE9;tique Mol&#xE9;culaires, CNRS, Toulouse"
  prefixed: "false"
  test: "ISA1083-2"
  probe: "https://www-is.biotoul.fr/scripts/ficheIS.php?name=ISA1083-2"
  pattern: "^IS\\w+(\\-\\d)?$"
  state: "62:Down"
  more: "http://www-is.biotoul.fr/i"

jcm:
  type: "scheme"
  name: "JCM at RIKEN BioResource Center"
  alias: 
  provider: 
  provider_id: "MIR:00100220"
  sort_score: "1"
  primary: "false"
  forward: "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=${ac}"
  redirect: "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$id"
  description: "The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2."
  subject: "microbial; strain"
  location: "Japan"
  synonym: "JCM"
  institution: "RIKEN BioResource Center, Ibaraki"
  prefixed: "false"
  test: "17254"
  probe: "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=17254"
  pattern: "^\\d+$"
  state: "71:Down"
  more: "http://www.jcm.riken.go.jp/"

img.taxon:
  type: "scheme"
  name: "Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100221"
  sort_score: "4"
  primary: "false"
  forward: "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=${ac}"
  redirect: "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$id"
  description: "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information."
  subject: "genome; taxonomy"
  location: "USA"
  synonym: "IMG Taxon"
  institution: "Lawrence Berkeley National Laboratory, Berkeley"
  prefixed: "false"
  test: "648028003"
  probe: "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=648028003"
  pattern: "^\\d+$"
  state: "94:Unknown"
  more: "http://img.jgi.doe.gov/"

img.gene:
  type: "scheme"
  name: "Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100222"
  sort_score: "4"
  primary: "false"
  forward: "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=${ac}"
  redirect: "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$id"
  description: "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information."
  subject: "gene; genome"
  location: "USA"
  synonym: "IMG Taxon"
  institution: "Lawrence Berkeley National Laboratory, Berkeley"
  prefixed: "false"
  test: "638309541"
  probe: "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=638309541"
  pattern: "^\\d+$"
  state: "94:Unknown"
  more: "http://img.jgi.doe.gov/"

maizegdb.locus:
  type: "scheme"
  name: "MaizeGDB at Missouri"
  alias: 
  provider: 
  provider_id: "MIR:00100223"
  sort_score: "4"
  primary: "false"
  forward: "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=${ac}"
  redirect: "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$id"
  description: "MaizeGDB is the maize research community's central repository for genetics and genomics information."
  subject: "plant; genome"
  location: "USA"
  synonym: "IMG Taxon"
  institution: "Division of Plant Sciences, Missouri"
  prefixed: "false"
  test: "25011"
  probe: "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25011"
  pattern: "^\\d+$"
  state: "88:Probably up"
  more: "http://www.maizegdb.org/"

mycobank:
  type: "scheme"
  name: "MycoBank at Fungal Biodiversity Centre"
  alias: 
  provider: 
  provider_id: "MIR:00100224"
  sort_score: "1"
  primary: "false"
  forward: "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=${ac}"
  redirect: "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$id"
  description: "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations."
  subject: "classification"
  location: "Netherlands"
  synonym: "IMG Taxon"
  institution: "CBS-KNAW  Fungal Biodiversity Centre, Utrecht"
  prefixed: "false"
  test: "349124"
  probe: "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=349124"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.mycobank.org/"

nbrc:
  type: "scheme"
  name: "NBRC Catalogue at National Institute of Technology Evaluation"
  alias: 
  provider: 
  provider_id: "MIR:00100225"
  sort_score: "1"
  primary: "false"
  forward: "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=${ac}"
  redirect: "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$id"
  description: "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information."
  subject: "microbial; strain"
  location: "Japan"
  synonym: "NBRC Catalogue"
  institution: "National Institute of Technology Evaluation, Tokyo"
  prefixed: "false"
  test: "00001234"
  probe: "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=00001234"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.nbrc.nite.go.jp/e/index.html"

pseudomonas:
  type: "scheme"
  name: "Pseudomonas Genome Database at Simon Fraser University"
  alias: 
  provider: 
  provider_id: "MIR:00100226"
  sort_score: "1"
  primary: "false"
  forward: "http://www.pseudomonas.com/feature/show/?locus_tag=${ac}"
  redirect: "http://www.pseudomonas.com/feature/show/?locus_tag=$id"
  description: "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation."
  subject: "protein; microbial; gene"
  location: "Canada"
  synonym: "PGD; Pseudocap"
  institution: "Simon Fraser University, British Columbia"
  prefixed: "false"
  test: "PSEEN0001"
  probe: "http://www.pseudomonas.com/feature/show/?locus_tag=PSEEN0001"
  pattern: "^P\\w+$"
  state: "75:Up"
  more: "http://www.pseudomonas.com/"

gramene.protein:
  type: "scheme"
  name: "Gramene Protein at Cold Spring Harbor"
  alias: 
  provider: 
  provider_id: "MIR:00100227"
  sort_score: "4"
  primary: "false"
  forward: "http://www.gramene.org/db/protein/protein_search?protein_id=${ac}"
  redirect: "http://www.gramene.org/db/protein/protein_search?protein_id=$id"
  description: "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene."
  subject: "expression; sequence; genome; plant"
  location: "USA"
  synonym: "PGD; Pseudocap"
  institution: "Cold Spring Harbor Laboratory, New York"
  prefixed: "false"
  test: "78073"
  probe: "http://www.gramene.org/db/protein/protein_search?protein_id=78073"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.gramene.org/"

gramene.gene:
  type: "scheme"
  name: "Gramene Genes at Cold Spring Harbor"
  alias: 
  provider: 
  provider_id: "MIR:00100228"
  sort_score: "4"
  primary: "false"
  forward: "http://www.gramene.org/db/genes/search_gene?acc=${ac}"
  redirect: "http://www.gramene.org/db/genes/search_gene?acc=$id"
  description: "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene."
  subject: "genome; gene; plant"
  location: "USA"
  synonym: "PGD; Pseudocap"
  institution: "Cold Spring Harbor Laboratory, New York"
  prefixed: "false"
  test: "GR:0080039"
  probe: "http://www.gramene.org/db/genes/search_gene?acc=GR:0080039"
  pattern: "^GR\\:\\d+$"
  state: "98:Up"
  more: "http://www.gramene.org/"

gramene.taxonomy:
  type: "scheme"
  name: "Gramene Taxonomy at Cold Spring Harbor"
  alias: 
  provider: 
  provider_id: "MIR:00100229"
  sort_score: "4"
  primary: "false"
  forward: "http://www.gramene.org/db/ontology/search?id=${ac}"
  redirect: "http://www.gramene.org/db/ontology/search?id=$id"
  description: "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene."
  subject: "plant; taxonomy"
  location: "USA"
  synonym: "PGD; Pseudocap"
  institution: "Cold Spring Harbor Laboratory, New York"
  prefixed: "false"
  test: "GR_tax:013681"
  probe: "http://www.gramene.org/db/ontology/search?id=GR_tax:013681"
  pattern: "^GR\\_tax\\:\\d+$"
  state: "99:Up"
  more: "http://www.gramene.org/"

gramene.qtl:
  type: "scheme"
  name: "Gramene Quantitative Trait Loci at Cold Spring Harbor"
  alias: 
  provider: 
  provider_id: "MIR:00100230"
  sort_score: "4"
  primary: "false"
  forward: "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=${ac}"
  redirect: "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$id"
  description: "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene."
  subject: "genome; phenotype; gene; plant"
  location: "USA"
  synonym: "PGD; Pseudocap"
  institution: "Cold Spring Harbor Laboratory, New York"
  prefixed: "false"
  test: "CQG5"
  probe: "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=CQG5"
  pattern: "^\\w+$"
  state: "99:Up"
  more: "http://www.gramene.org/"

sgn:
  type: "scheme"
  name: "Sol Genomics Network at Boyce Thompson Institute for Plant Research"
  alias: 
  provider: 
  provider_id: "MIR:00100231"
  sort_score: "4"
  primary: "false"
  forward: "http://solgenomics.net/phenome/locus_display.pl?locus_id=${ac}"
  redirect: "http://solgenomics.net/phenome/locus_display.pl?locus_id=$id"
  description: "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant."
  subject: "genome; plant"
  location: "USA"
  synonym: "SGN"
  institution: "Boyce Thompson Institute for Plant Research, New York"
  prefixed: "false"
  test: "0001"
  probe: "http://solgenomics.net/phenome/locus_display.pl?locus_id=0001"
  pattern: "^\\d+$"
  state: "50:Down"
  more: "http://solgenomics.net/"

xenbase:
  type: "scheme"
  name: "Xenbase at University of Calgary"
  alias: 
  provider: 
  provider_id: "MIR:00100232"
  sort_score: "1"
  primary: "false"
  forward: "http://www.xenbase.org/gene/showgene.do?method=displayGeneSummary&geneId=${ac}"
  redirect: "http://www.xenbase.org/gene/showgene.do?method=displayGeneSummary&geneId=$id"
  description: "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions."
  subject: "genome; expression"
  location: "Canada"
  synonym: "SGN"
  institution: "Department of Biological Sciences, University of Calgary, Alberta"
  prefixed: "false"
  test: "922462"
  probe: "http://www.xenbase.org/gene/showgene.do?method=displayGeneSummary&geneId=922462"
  pattern: "^(XB-GENE-)?\\d+$"
  state: "98:Up"
  more: "http://www.xenbase.org/"

bioportal:
  type: "scheme"
  name: "BioPortal at National Center for Biomedical Ontology"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100244"
  sort_score: "4"
  primary: "false"
  forward: "http://bioportal.bioontology.org/ontologies/${ac}"
  redirect: "http://bioportal.bioontology.org/ontologies/$id"
  description: "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Prot&#xE9;g&#xE9; frames. BioPortal functionality includes the ability to browse, search and visualize ontologies."
  subject: "ontology; registry"
  location: "USA"
  synonym: "SGN"
  institution: "National Center for Biomedical Ontology, Stanford University"
  prefixed: "false"
  test: "1046"
  probe: "http://bioportal.bioontology.org/ontologies/1046"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://bioportal.bioontology.org/"

bptl/bioportal:
  type: "synonym"
  for: "bioportal"

miriam.resource:
  type: "scheme"
  name: "MIRIAM Registry (resources)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100245"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/miriam/main/resources/${ac}"
  redirect: "https://www.ebi.ac.uk/miriam/main/resources/$id"
  description: "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases."
  subject: "schema.org"
  location: "UK"
  synonym: "SGN"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "MIR:00100005"
  probe: "https://www.ebi.ac.uk/miriam/main/resources/MIR:00100005"
  pattern: "^MIR:001\\d{5}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/miriam/"

ebi/miriam.resource:
  type: "synonym"
  for: "miriam.resource"

edam:
  type: "scheme"
  name: "EDAM through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100536"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/EDAM/${ac}"
  redirect: "http://purl.bioontology.org/ontology/EDAM/$id"
  description: "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications)."
  subject: "ontology"
  location: "USA"
  synonym: "EMBRACE Data and Methods Ontology"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "data_1664"
  probe: "http://purl.bioontology.org/ontology/EDAM/data_1664"
  pattern: "^(data|topic|operation|format)\\_\\d{4}$"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/EDAM"

bptl/edam:
  type: "synonym"
  for: "edam"

ols/edam:
  type: "scheme"
  name: "EDAM through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100762"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/edam/terms?short_form=${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/edam/terms?short_form=$id"
  description: "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications)."
  subject: "ontology"
  location: "UK"
  synonym: "EMBRACE Data and Methods Ontology"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "data_1664"
  probe: "https://www.ebi.ac.uk/ols/ontologies/edam/terms?short_form=data_1664"
  pattern: "^(data|topic|operation|format)\\_\\d{4}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/edam"

pmdb:
  type: "scheme"
  name: "Protein Model Database at University of Rome"
  alias: 
  provider: 
  provider_id: "MIR:00100247"
  sort_score: "1"
  primary: "false"
  forward: "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=${ac}"
  redirect: "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$id"
  description: "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques."
  subject: "protein; structure"
  location: "Italy"
  synonym: "PMDB"
  institution: "CASPUR and Biocomputing group, Department of Biochemical Sciences, University of Rome, Rome"
  prefixed: "false"
  test: "PM0012345"
  probe: "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=PM0012345"
  pattern: "^PM\\d{7}"
  state: "75:Down"
  more: "https://bioinformatics.cineca.it/PMDB/"

arachnoserver:
  type: "scheme"
  name: "ArachnoServer at Brisbane"
  alias: 
  provider: 
  provider_id: "MIR:00100250"
  sort_score: "1"
  primary: "false"
  forward: "http://www.arachnoserver.org/toxincard.html?id=${ac}"
  redirect: "http://www.arachnoserver.org/toxincard.html?id=$id"
  description: "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information."
  subject: "sequence; structure; drug"
  location: "Australia"
  synonym: "PMDB"
  institution: "Institute for Molecular Bioscience, The University of Queensland, Brisbane"
  prefixed: "false"
  test: "AS000060"
  probe: "http://www.arachnoserver.org/toxincard.html?id=AS000060"
  pattern: "^AS\\d{6}$"
  state: "98:Up"
  more: "http://www.arachnoserver.org/"

biocyc:
  type: "scheme"
  name: "BioCyc at SRI International"
  alias: 
  provider: 
  provider_id: "MIR:00100251"
  sort_score: "4"
  primary: "false"
  forward: "http://biocyc.org/getid?id=${ac}"
  redirect: "http://biocyc.org/getid?id=$id"
  description: "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms."
  subject: "chemical; sequence; reaction; genome; pathway"
  location: "USA"
  synonym: "PMDB"
  institution: "Bioinformatics Research Group, SRI International, California"
  prefixed: "false"
  test: "ECOLI:CYT-D-UBIOX-CPLX"
  probe: "http://biocyc.org/getid?id=ECOLI:CYT-D-UBIOX-CPLX"
  pattern: "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$"
  state: "86:Up"
  more: "http://biocyc.org"

cazy:
  type: "scheme"
  name: "CAZy at CNRS"
  alias: 
  provider: 
  provider_id: "MIR:00100252"
  sort_score: "1"
  primary: "false"
  forward: "http://www.cazy.org/${ac}.html"
  redirect: "http://www.cazy.org/$id.html"
  description: "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features."
  subject: "polysaccharide; classification"
  location: "France"
  synonym: "Carbohydrate-Active enzYmes"
  institution: "Architecture et Fonction des Macromol&#xE9;cules Biologiques, CNRS, Marseille"
  prefixed: "false"
  test: "GT10"
  probe: "http://www.cazy.org/GT10.html"
  pattern: "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$"
  state: "100:Up"
  more: "http://www.cazy.org/"

goa:
  type: "scheme"
  name: "GOA through QuickGO"
  alias: 
  provider: "quickgo"
  provider_id: "MIR:00100253"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/QuickGO/GProtein?ac=${ac}"
  redirect: "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$id"
  description: "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups."
  subject: "protein; ontology; annotation"
  location: "UK"
  synonym: "UniProtKB-GOA; Gene Ontology Annotation"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "P12345"
  probe: "https://www.ebi.ac.uk/QuickGO/GProtein?ac=P12345"
  pattern: "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$"
  state: "79:Up"
  more: "https://www.ebi.ac.uk/GOA/"

quickgo/goa:
  type: "synonym"
  for: "goa"

paleodb:
  type: "scheme"
  name: "PaleoDB at Macquarie University"
  alias: 
  provider: 
  provider_id: "MIR:00100254"
  sort_score: "1"
  primary: "false"
  forward: "http://fossilworks.org/?a=taxonInfo&taxon_no=${ac}"
  redirect: "http://fossilworks.org/?a=taxonInfo&taxon_no=$id"
  description: "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data."
  subject: "taxonomy"
  location: "Australia"
  synonym: "Paleobiology database"
  institution: "Macquarie University, Sydney"
  prefixed: "false"
  test: "83088"
  probe: "http://fossilworks.org/?a=taxonInfo&taxon_no=83088"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://paleodb.org/"

compulyeast:
  type: "scheme"
  name: "Compluyeast database at Universidad Complutense Madrid"
  alias: 
  provider: 
  provider_id: "MIR:00100257"
  sort_score: "1"
  primary: "false"
  forward: "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=${ac}"
  redirect: "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id"
  description: "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record."
  subject: "protein"
  location: "Spain"
  synonym: "Compluyeast-2D-DB"
  institution: "Department Microbiology II, Universidad Complutense Madrid, Madrid"
  prefixed: "false"
  test: "O08709"
  probe: "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=O08709"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"
  state: "60:Down"
  more: "http://compluyeast2dpage.dacya.ucm.es/"

disprot:
  type: "scheme"
  name: "DisProt at Indiana University"
  alias: 
  provider: 
  provider_id: "MIR:00100258"
  sort_score: "4"
  primary: "false"
  forward: "http://www.disprot.org/${ac}"
  redirect: "http://www.disprot.org/$id"
  description: "The Database of Protein Disorder (DisProt) is a curated database that provides information about proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part."
  subject: "protein; structure"
  location: "USA"
  synonym: "Compluyeast-2D-DB"
  institution: "Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis"
  prefixed: "false"
  test: "DP00003"
  probe: "http://www.disprot.org/DP00003"
  pattern: "^DP\\d{5}$"
  state: "98:Probably up"
  more: "http://www.disprot.org/"

echobase:
  type: "scheme"
  name: "EchoBASE at the University of York"
  alias: 
  provider: 
  provider_id: "MIR:00100259"
  sort_score: "2"
  primary: "false"
  forward: "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=${ac}"
  redirect: "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$id"
  description: "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products."
  subject: "genome; gene; protein"
  location: "UK"
  synonym: "Compluyeast-2D-DB"
  institution: "Department of Biology (Area 10), University of York, York"
  prefixed: "false"
  test: "EB0170"
  probe: "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0170"
  pattern: "^EB\\d+$"
  state: "91:Up"
  more: "http://www.york.ac.uk/"

eggnog:
  type: "scheme"
  name: "eggNOG Version 3 at European Molecular Biology Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100260"
  sort_score: "1"
  primary: "false"
  forward: "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=${ac}"
  redirect: "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$id"
  description: "eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories)."
  subject: "clustering; gene"
  location: "Germany"
  synonym: "Compluyeast-2D-DB"
  institution: "European Molecular Biology Laboratory, Heidelberg"
  prefixed: "false"
  test: "veNOG12876"
  probe: "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=veNOG12876"
  pattern: "^\\w+$"
  state: "98:Up"
  more: "http://eggnog.embl.de/version_3.0/"

ensembl.bacteria:
  type: "scheme"
  name: "Ensembl Bacteria at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100261"
  sort_score: "2"
  primary: "false"
  forward: "https://bacteria.ensembl.org/id/${ac}"
  redirect: "https://bacteria.ensembl.org/id/$id"
  description: "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes."
  subject: "genome; nucleotide; sequence"
  location: "UK"
  synonym: "Ensembl Genomes Bacteria"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "MU9_3181"
  probe: "https://bacteria.ensembl.org/id/MU9_3181"
  pattern: "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$"
  state: "96:Up"
  more: "https://bacteria.ensembl.org/"

ebi/ensembl.bacteria:
  type: "synonym"
  for: "ensembl.bacteria"

ensembl.protist:
  type: "scheme"
  name: "Ensembl Protists at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100262"
  sort_score: "2"
  primary: "false"
  forward: "https://protists.ensembl.org/id/${ac}"
  redirect: "https://protists.ensembl.org/id/$id"
  description: "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes."
  subject: "genome; nucleotide; sequence"
  location: "UK"
  synonym: "Ensembl Genomes Protists"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "PF3D7_1328700"
  probe: "https://protists.ensembl.org/id/PF3D7_1328700"
  pattern: "^\\w+$"
  state: "67:Up"
  more: "https://protists.ensembl.org"

ebi/ensembl.protist:
  type: "synonym"
  for: "ensembl.protist"

ensembl.metazoa:
  type: "scheme"
  name: "Enzembl Metazoa at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100263"
  sort_score: "2"
  primary: "false"
  forward: "https://metazoa.ensembl.org/id/${ac}"
  redirect: "https://metazoa.ensembl.org/id/$id"
  description: "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes."
  subject: "sequence; nucleotide; genome"
  location: "UK"
  synonym: "Ensembl Genomes Metazoa"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "FBtr0084214"
  probe: "https://metazoa.ensembl.org/id/FBtr0084214"
  pattern: "^\\w+(\\.)?\\d+$"
  state: "94:Up"
  more: "https://metazoa.ensembl.org/"

ebi/ensembl.metazoa:
  type: "synonym"
  for: "ensembl.metazoa"

ensembl.plant:
  type: "scheme"
  name: "Enzembl Plants at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100264"
  sort_score: "2"
  primary: "false"
  forward: "https://plants.ensembl.org/id/${ac}"
  redirect: "https://plants.ensembl.org/id/$id"
  description: "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes."
  subject: "nucleotide; genome; sequence"
  location: "UK"
  synonym: "Ensembl Genomes Plants"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "AT1G73965"
  probe: "https://plants.ensembl.org/id/AT1G73965"
  pattern: "^\\w+(\\.\\d+)?(\\.\\d+)?$"
  state: "90:Up"
  more: "https://plants.ensembl.org/"

ebi/ensembl.plant:
  type: "synonym"
  for: "ensembl.plant"

ensembl.fungi:
  type: "scheme"
  name: "Enzembl Fungi at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100265"
  sort_score: "2"
  primary: "false"
  forward: "https://fungi.ensembl.org/id/${ac}"
  redirect: "https://fungi.ensembl.org/id/$id"
  description: "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes."
  subject: "nucleotide; sequence; genome"
  location: "UK"
  synonym: "Ensembl Genomes Fungi"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "CADAFLAT00006211"
  probe: "https://fungi.ensembl.org/id/CADAFLAT00006211"
  pattern: "^[A-Z-a-z0-9]+$"
  state: "60:Down"
  more: "https://fungi.ensembl.org/"

ebi/ensembl.fungi:
  type: "synonym"
  for: "ensembl.fungi"

hcvdb:
  type: "scheme"
  name: "HCVDB at CNRS"
  alias: 
  provider: 
  provider_id: "MIR:00100266"
  sort_score: "1"
  primary: "false"
  forward: "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=${ac}"
  redirect: "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$id"
  description: "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses."
  subject: "genome; sequence"
  location: "France"
  synonym: "euHCVDB"
  institution: "Institut de Biologie et Chimie des Prot&#xE9;ines, CNRS, University of Lyon , Lyon-Gerland"
  prefixed: "false"
  test: "M58335"
  probe: "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=M58335"
  pattern: "^M\\d{5}$"
  state: "79:Up"
  more: "http://euhcvdb.ibcp.fr/euHCVdb/"

genatlas:
  type: "scheme"
  name: "Genatlas at Paris Descartes University"
  alias: 
  provider: 
  provider_id: "MIR:00100267"
  sort_score: "1"
  primary: "false"
  forward: "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=${ac}"
  redirect: "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$id"
  description: "GenAtlas is a database containing information on human genes, markers and phenotypes."
  subject: "gene; disorder; human"
  location: "France"
  synonym: "euHCVDB"
  institution: "Paris Descartes University, Paris"
  prefixed: "false"
  test: "HBB"
  probe: "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=HBB"
  pattern: "^\\w+$"
  state: "100:Up"
  more: "http://genatlas.medecine.univ-paris5.fr/"

cath.superfamily:
  type: "scheme"
  name: "CATH superfamily at UCL"
  alias: 
  provider: 
  provider_id: "MIR:00100268"
  sort_score: "1"
  primary: "false"
  forward: "http://www.cathdb.info/cathnode/${ac}"
  redirect: "http://www.cathdb.info/cathnode/$id"
  description: "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and  Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification."
  subject: "schema.org; classification; protein; structure"
  location: "United Kingdom"
  synonym: "euHCVDB"
  institution: "Institute of Structural and Molecular Biology, University College London"
  prefixed: "false"
  test: "1.10.10.200"
  probe: "http://www.cathdb.info/cathnode/1.10.10.200"
  pattern: "^\\d+(\\.\\d+(\\.\\d+(\\.\\d+)?)?)?$"
  state: "85:Up"
  more: "http://www.cathdb.info/"

cath.domain:
  type: "scheme"
  name: "CATH domain at UCL"
  alias: 
  provider: 
  provider_id: "MIR:00100269"
  sort_score: "2"
  primary: "false"
  forward: "http://www.cathdb.info/domain/${ac}"
  redirect: "http://www.cathdb.info/domain/$id"
  description: "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains."
  subject: "structure; schema.org; protein; classification"
  location: "UK"
  synonym: "euHCVDB"
  institution: "Institute of Structural and Molecular Biology, University College London"
  prefixed: "false"
  test: "1cukA01"
  probe: "http://www.cathdb.info/domain/1cukA01"
  pattern: "^\\w+$"
  state: "98:Up"
  more: "http://www.cathdb.info/"

genefarm:
  type: "scheme"
  name: "GeneFarm at Unit&#xE9; de Recherche en G&#xE9;nomique V&#xE9;g&#xE9;tale"
  alias: 
  provider: 
  provider_id: "MIR:00100270"
  sort_score: "1"
  primary: "false"
  forward: "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=${ac}"
  redirect: "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$id"
  description: "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products."
  subject: "nucleotide; sequence; expression; genome"
  location: "France"
  synonym: "euHCVDB"
  institution: "Unit&#xE9; de Recherche en G&#xE9;nomique V&#xE9;g&#xE9;tale, Evry"
  prefixed: "false"
  test: "4892"
  probe: "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=4892"
  pattern: "^\\d+$"
  state: "46:Down"
  more: "http://urgi.versailles.inra.fr/Genefarm/"

gpcrdb:
  type: "scheme"
  name: "GPCRDB at Radboud University"
  alias: 
  provider: 
  provider_id: "MIR:00100271"
  sort_score: "1"
  primary: "false"
  forward: "http://www.gpcrdb.org/protein/${ac}/"
  redirect: "http://www.gpcrdb.org/protein/$id/"
  description: "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models."
  subject: "protein"
  location: "Holland"
  synonym: "G protein-coupled receptor database"
  institution: "Radboud University Nijmegen Medical Centre, Nijmegen,"
  prefixed: "false"
  test: "RL3R1_HUMAN"
  probe: "http://www.gpcrdb.org/protein/RL3R1_HUMAN/"
  pattern: "^\\w+$"
  state: "90:Up"
  more: "http://www.gpcrdb.org/"

hogenom:
  type: "scheme"
  name: "HOGENOM at CNRS"
  alias: 
  provider: 
  provider_id: "MIR:00100272"
  sort_score: "1"
  primary: "false"
  forward: "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=${ac}"
  redirect: "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$id"
  description: "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier."
  subject: "classification; sequence"
  location: "France"
  synonym: "G protein-coupled receptor database"
  institution: "Laboratoire de Biom&#xE9;trie et Biologie Evolutive, CNRS, Lyon"
  prefixed: "false"
  test: "HBG284870"
  probe: "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=HBG284870"
  pattern: "^\\w+$"
  state: "97:Up"
  more: "http://pbil.univ-lyon1.fr/databases/hogenom/"

genetree:
  type: "scheme"
  name: "GeneTree at Ensembl"
  alias: 
  provider: 
  provider_id: "MIR:00100273"
  sort_score: "2"
  primary: "false"
  forward: "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=${ac}"
  redirect: "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$id"
  description: "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl."
  subject: "classification; gene; protein; schema.org"
  location: "UK"
  synonym: "Ensembl GeneTree"
  institution: "Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "ENSGT00550000074763"
  probe: "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=ENSGT00550000074763"
  pattern: "^ENSGT\\d+$"
  state: "99:Probably up"
  more: "http://www.ensembl.org/"

hssp:
  type: "scheme"
  name: "HSSP at CMBI"
  alias: 
  provider: 
  provider_id: "MIR:00100458"
  sort_score: "1"
  primary: "false"
  forward: "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/${ac}.hssp.bz2"
  redirect: "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/$id.hssp.bz2"
  description: "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein."
  subject: "clustering; sequence; protein"
  location: "Holland"
  synonym: "Homology-derived Structure of Proteins"
  institution: "Nijmegen Centre for Molecular Life Sciences, CMBI, Nijmegen"
  prefixed: "false"
  test: "102l"
  probe: "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/102l.hssp.bz2"
  pattern: "^\\w{4}$"
  state: "93:Unknown"
  more: "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/"

z040/hssp:
  type: "scheme"
  name: "HSSP at EMBL"
  alias: 
  provider: "z040"
  provider_id: "MIR:00100274"
  sort_score: "1"
  primary: "false"
  forward: "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/${ac}.hssp.bz2"
  redirect: "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$id.hssp.bz2"
  description: "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein."
  subject: "clustering; sequence; protein"
  location: "Germany"
  synonym: "Homology-derived Structure of Proteins"
  institution: "Protein Design Group, European Molecular Biology Laboratory, Heidelberg"
  prefixed: "false"
  test: "102l"
  probe: "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/102l.hssp.bz2"
  pattern: "^\\w{4}$"
  state: "68:Down"
  more: "http://swift.cmbi.kun.nl/swift/hssp/"

myco.tuber:
  type: "scheme"
  name: "MycoBrowser tuberculosis at Global Health Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100275"
  sort_score: "1"
  primary: "false"
  forward: "http://tuberculist.epfl.ch/quicksearch.php?gene+name=${ac}"
  redirect: "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id"
  description: "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information."
  subject: "sequence; genome"
  location: "Switzerland"
  synonym: "TubercuList"
  institution: "Global Health Institute,  Lausanne"
  prefixed: "false"
  test: "Rv1908c"
  probe: "http://tuberculist.epfl.ch/quicksearch.php?gene+name=Rv1908c"
  pattern: "^Rv\\d{4}(A|B|c)?$"
  state: "96:Up"
  more: "http://tuberculist.epfl.ch/"

myco.lepra:
  type: "scheme"
  name: "MycoBrowser leprae at Global Health Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100276"
  sort_score: "1"
  primary: "false"
  forward: "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=${ac}"
  redirect: "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id"
  description: "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information."
  subject: "genome; sequence"
  location: "Switzerland"
  synonym: "Leproma"
  institution: "Global Health Institute,  Lausanne"
  prefixed: "false"
  test: "ML0224"
  probe: "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=ML0224"
  pattern: "^ML\\w+$"
  state: "76:Down"
  more: "http://mycobrowser.epfl.ch/leprosy.html"

myco.marinum:
  type: "scheme"
  name: "MycoBrowser marinum at Global Health Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100277"
  sort_score: "1"
  primary: "false"
  forward: "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=${ac}"
  redirect: "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$id"
  description: "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information."
  subject: "genome; sequence"
  location: "Switzerland"
  synonym: "marinolist"
  institution: "Global Health Institute,  Lausanne"
  prefixed: "false"
  test: "MMAR_2462"
  probe: "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=MMAR_2462"
  pattern: "^MMAR\\_\\d+$"
  state: "76:Down"
  more: "http://mycobrowser.epfl.ch/marinolist.html"

myco.smeg:
  type: "scheme"
  name: "MycoBrowser smegmatis at Global Health Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100278"
  sort_score: "1"
  primary: "false"
  forward: "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=${ac}"
  redirect: "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$id"
  description: "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information."
  subject: "genome; sequence"
  location: "Switzerland"
  synonym: "smegmalist"
  institution: "Global Health Institute,  Lausanne"
  prefixed: "false"
  test: "MSMEG_3769"
  probe: "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=MSMEG_3769"
  pattern: "^MSMEG\\w+$"
  state: "76:Down"
  more: "http://mycobrowser.epfl.ch/smegmalist.html"

orphanet:
  type: "scheme"
  name: "Orphanet at Inserm"
  alias: 
  provider: 
  provider_id: "MIR:00100279"
  sort_score: "6"
  primary: "true"
  forward: "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=${ac}"
  redirect: "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$id"
  description: "Orphanet is a reference portal for information on rare diseases and orphan drugs. It&#x2019;s aim is to help improve the diagnosis, care and treatment of patients with rare diseases."
  subject: "human; disease; drug"
  location: "France"
  synonym: "Orpha"
  institution: "Inserm, H&#xF4;pital Broussais, Paris"
  prefixed: "false"
  test: "85163"
  probe: "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=85163"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.orpha.net/consor/"

z041/orphanet:
  type: "scheme"
  name: "Bio2RDF"
  alias: 
  provider: "z041"
  provider_id: "MIR:00100701"
  sort_score: "1"
  primary: "false"
  forward: "http://orphanet.bio2rdf.org/describe/?url=http://bio2rdf.org/orphanet:${ac}"
  redirect: "http://orphanet.bio2rdf.org/describe/?url=http://bio2rdf.org/orphanet:$id"
  description: "Orphanet is a reference portal for information on rare diseases and orphan drugs. It&#x2019;s aim is to help improve the diagnosis, care and treatment of patients with rare diseases."
  subject: "human; disease; drug"
  location: 
  synonym: "Orpha"
  institution: "Bio2RDF.org"
  prefixed: "false"
  test: "85163"
  probe: "http://orphanet.bio2rdf.org/describe/?url=http://bio2rdf.org/orphanet:85163"
  pattern: "^\\d+$"
  state: "52:Down"
  more: "http://orphanet.bio2rdf.org/fct"

orthodb:
  type: "scheme"
  name: "OrthoDB at Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100280"
  sort_score: "1"
  primary: "false"
  forward: "http://cegg.unige.ch/orthodb/results?searchtext=${ac}"
  redirect: "http://cegg.unige.ch/orthodb/results?searchtext=$id"
  description: "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups"
  subject: "eukaryotic; protein; sequence"
  location: "Switzerland"
  synonym: "Orpha"
  institution: "Department of Genetic Medicine and Development, Swiss Institute of Bioinformatics, Geneva"
  prefixed: "false"
  test: "Q9P0K8"
  probe: "http://cegg.unige.ch/orthodb/results?searchtext=Q9P0K8"
  pattern: "^\\w+$"
  state: "100:Up"
  more: "http://cegg.unige.ch/orthodb4"

peroxibase:
  type: "scheme"
  name: "Peroxibase at University of Geneva"
  alias: 
  provider: 
  provider_id: "MIR:00100281"
  sort_score: "1"
  primary: "false"
  forward: "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=${ac}"
  redirect: "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$id"
  description: "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences."
  subject: "enzyme; sequence"
  location: "Switzerland"
  synonym: "Orpha"
  institution: "Department of Plant Biology, University of Geneva, Geneva"
  prefixed: "false"
  test: "5282"
  probe: "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=5282"
  pattern: "^\\d+$"
  state: "97:Up"
  more: "http://peroxibase.toulouse.inra.fr/"

phylomedb:
  type: "scheme"
  name: "PhylomeDB at Centro de Investigaci&#xF3;n Pr&#xED;ncipe Felipe"
  alias: 
  provider: 
  provider_id: "MIR:00100282"
  sort_score: "1"
  primary: "false"
  forward: "http://phylomedb.org/?seqid=${ac}"
  redirect: "http://phylomedb.org/?seqid=$id"
  description: "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins."
  subject: "taxonomy; protein; genome"
  location: "Spain"
  synonym: "Orpha"
  institution: "Bioinformatics Department,Centro de Investigaci&#xF3;n Pr&#xED;ncipe Felipe, Valencia"
  prefixed: "false"
  test: "Phy000CLXM_RAT"
  probe: "http://phylomedb.org/?seqid=Phy000CLXM_RAT"
  pattern: "^\\w+$"
  state: "97:Probably up"
  more: "http://phylomedb.org/"

pmap.substratedb:
  type: "scheme"
  name: "SubstrateDB at The Burnham Institute for Medical Research"
  alias: 
  provider: 
  provider_id: "MIR:00100283"
  sort_score: "4"
  primary: "false"
  forward: "http://substrate.burnham.org/protein/annotation/${ac}/html"
  redirect: "http://substrate.burnham.org/protein/annotation/$id/html"
  description: "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates."
  subject: "protein; reaction; domain"
  location: "USA"
  synonym: "PMAP substrateDB"
  institution: "The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center, The Burnham Institute for Medical Research, California"
  prefixed: "false"
  test: "1915"
  probe: "http://substrate.burnham.org/protein/annotation/1915/html"
  pattern: "^\\d+$"
  state: "88:Down"
  more: "http://substrate.burnham.org/"

pmap.cutdb:
  type: "scheme"
  name: "CutDB at The Burnham Institute for Medical Research"
  alias: 
  provider: 
  provider_id: "MIR:00100284"
  sort_score: "4"
  primary: "false"
  forward: "http://cutdb.burnham.org/relation/show/${ac}"
  redirect: "http://cutdb.burnham.org/relation/show/$id"
  description: "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites)."
  subject: "reaction; protein; domain"
  location: "USA"
  synonym: "PMAP cutDB"
  institution: "The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center, The Burnham Institute for Medical Research, California"
  prefixed: "false"
  test: "25782"
  probe: "http://cutdb.burnham.org/relation/show/25782"
  pattern: "^\\d+$"
  state: "83:Down"
  more: "http://cutdb.burnham.org"

protclustdb:
  type: "scheme"
  name: "ProtClustDB at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100285"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$id"
  description: "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters."
  subject: "clustering; protein"
  location: "USA"
  synonym: "Protein Clusters Database; Entrez ProtClustDB"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "O80725"
  probe: "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=O80725"
  pattern: "^\\w+$"
  state: "72:Down"
  more: "https://www.ncbi.nlm.nih.gov/proteinclusters?db=proteinclusters"

ncbi/protclustdb:
  type: "synonym"
  for: "protclustdb"

pmp:
  type: "scheme"
  name: "PMP at University of Basel"
  alias: 
  provider: 
  provider_id: "MIR:00100286"
  sort_score: "1"
  primary: "false"
  forward: "http://www.proteinmodelportal.org/query/uniprot/${ac}"
  redirect: "http://www.proteinmodelportal.org/query/uniprot/$id"
  description: "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers."
  subject: "structure; protein"
  location: "Switzerland"
  synonym: "Protein Model Portal"
  institution: "Biozentrum, University of Basel, Basel"
  prefixed: "false"
  test: "Q0VCA6"
  probe: "http://www.proteinmodelportal.org/query/uniprot/Q0VCA6"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"
  state: "92:Up"
  more: "http://www.proteinmodelportal.org/"

protonet.proteincard:
  type: "scheme"
  name: "ProtoNet at Hebrew University"
  alias: 
  provider: 
  provider_id: "MIR:00100287"
  sort_score: "1"
  primary: "false"
  forward: "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=${ac}"
  redirect: "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$id"
  description: "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information."
  subject: "protein"
  location: "Israel"
  synonym: "Protein Model Portal"
  institution: "Hebrew University, Jerusalem"
  prefixed: "false"
  test: "16941567"
  probe: "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=16941567"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.protonet.cs.huji.ac.il/"

protonet.cluster:
  type: "scheme"
  name: "ProtoNet at Hebrew University"
  alias: 
  provider: 
  provider_id: "MIR:00100288"
  sort_score: "1"
  primary: "false"
  forward: "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=${ac}"
  redirect: "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$id"
  description: "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information."
  subject: "protein; clustering; classification"
  location: "Israel"
  synonym: "Protein Model Portal"
  institution: "Hebrew University, Jerusalem"
  prefixed: "false"
  test: "4349895"
  probe: "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=4349895"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.protonet.cs.huji.ac.il/"

rebase:
  type: "scheme"
  name: "REBASE at New England Biolabs"
  alias: 
  provider: 
  provider_id: "MIR:00100289"
  sort_score: "4"
  primary: "false"
  forward: "http://rebase.neb.com/rebase/enz/${ac}.html"
  redirect: "http://rebase.neb.com/rebase/enz/$id.html"
  description: "REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data."
  subject: "reaction; enzyme"
  location: "USA"
  synonym: "Restriction Enzyme Database"
  institution: "New England Biolabs, Ipswich, Massachusetts"
  prefixed: "false"
  test: "101"
  probe: "http://rebase.neb.com/rebase/enz/101.html"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://rebase.neb.com/rebase/"

swiss-model:
  type: "scheme"
  name: "SWISS-MODEL at SIB Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100290"
  sort_score: "1"
  primary: "false"
  forward: "https://swissmodel.expasy.org/repository/uniprot/${ac}"
  redirect: "https://swissmodel.expasy.org/repository/uniprot/$id"
  description: "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences."
  subject: "structure; protein"
  location: "Switzerland"
  synonym: "Restriction Enzyme Database"
  institution: "Biozentrum, University of Basel and SIB Swiss Institute of Bioinformatics, Basel"
  prefixed: "false"
  test: "P23298"
  probe: "https://swissmodel.expasy.org/repository/uniprot/P23298"
  pattern: "^\\w+$"
  state: "99:Up"
  more: "https://swissmodel.expasy.org"

vectorbase:
  type: "scheme"
  name: "Vectorbase at EMBL-EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100291"
  sort_score: "6"
  primary: "true"
  forward: "https://www.vectorbase.org/search/site/${ac}?&site=\"Genome\""
  redirect: "https://www.vectorbase.org/search/site/$id?&site=\"Genome\""
  description: "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis."
  subject: "gene; protein; genome"
  location: "UK"
  synonym: "Restriction Enzyme Database"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "ISCW007415"
  probe: "https://www.vectorbase.org/search/site/ISCW007415?&site=\"Genome\""
  pattern: "^\\D{4}\\d{6}(\\-\\D{2})?$"
  state: "35:Down"
  more: "https://www.vectorbase.org/"

ebi/vectorbase:
  type: "synonym"
  for: "vectorbase"

doid:
  type: "scheme"
  name: "Human Disease Ontology at Northwestern University"
  alias: 
  provider: 
  provider_id: "MIR:00100297"
  sort_score: "4"
  primary: "false"
  forward: "http://disease-ontology.org/term/DOID:${ac}"
  redirect: "http://disease-ontology.org/term/DOID:$id"
  description: "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts."
  subject: "disease; human; ontology"
  location: "USA"
  synonym: "DO"
  institution: "University of Maryland (Maryland) and Northwestern University (Illinois)"
  prefixed: "true"
  test: "11337"
  probe: "http://disease-ontology.org/term/DOID:11337"
  pattern: "^DOID\\:\\d+$"
  state: "99:Up"
  more: "http://disease-ontology.org/"

bptl/doid:
  type: "scheme"
  name: "Human Disease Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100292"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/DOID/DOID:${ac}"
  redirect: "http://purl.bioontology.org/ontology/DOID/DOID:$id"
  description: "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts."
  subject: "disease; human; ontology"
  location: "USA"
  synonym: "DO"
  institution: "National Center for Biomedical Ontology, Stanford University"
  prefixed: "true"
  test: "11337"
  probe: "http://purl.bioontology.org/ontology/DOID/DOID:11337"
  pattern: "^DOID\\:\\d+$"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/DOID"

ols/doid:
  type: "scheme"
  name: "Human Disease Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100293"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/doid/terms?obo_id=DOID:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/doid/terms?obo_id=DOID:$id"
  description: "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts."
  subject: "disease; human; ontology"
  location: "UK"
  synonym: "DO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "11337"
  probe: "https://www.ebi.ac.uk/ols/ontologies/doid/terms?obo_id=DOID:11337"
  pattern: "^DOID\\:\\d+$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/doid"

cco:
  type: "scheme"
  name: "Cell Cycle Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100294"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/cco/terms?obo_id=CCO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/cco/terms?obo_id=CCO:$id"
  description: "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process."
  subject: "ontology"
  location: "UK"
  synonym: "DO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000003"
  probe: "https://www.ebi.ac.uk/ols/ontologies/cco/terms?obo_id=CCO:0000003"
  pattern: "^CCO\\:\\w+$"
  state: "67:Up"
  more: "https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=CCO"

ols/cco:
  type: "synonym"
  for: "cco"

mirbase.mature:
  type: "scheme"
  name: "miRBase"
  alias: 
  provider: 
  provider_id: "MIR:00100296"
  sort_score: "2"
  primary: "false"
  forward: "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=${ac}"
  redirect: "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$id"
  description: "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence."
  subject: "nucleotide; sequence"
  location: "UK"
  synonym: "DO"
  institution: "Faculty of Life Sciences, University of Manchester"
  prefixed: "false"
  test: "MIMAT0000001"
  probe: "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0000001"
  pattern: "MIMAT\\d{7}"
  state: "99:Up"
  more: "http://www.mirbase.org/"

nextprot:
  type: "scheme"
  name: "nextProt at Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100300"
  sort_score: "1"
  primary: "false"
  forward: "https://www.nextprot.org/db/entry/${ac}"
  redirect: "https://www.nextprot.org/db/entry/$id"
  description: "neXtProt is a resource on human proteins, and includes information such as proteins&#x2019; function, subcellular location, expression, interactions and role in diseases."
  subject: "protein; human"
  location: "Switzerland"
  synonym: "DO"
  institution: "Swiss Institute of Bioinformatics, Geneva"
  prefixed: "false"
  test: "NX_O00165"
  probe: "https://www.nextprot.org/db/entry/NX_O00165"
  pattern: "^NX_\\w+"
  state: "99:Probably up"
  more: "https://www.nextprot.org/"

cas:
  type: "scheme"
  name: "CAS through Common Chemistry"
  alias: 
  provider: 
  provider_id: "MIR:00100301"
  sort_score: "4"
  primary: "false"
  forward: "http://commonchemistry.org/ChemicalDetail.aspx?ref=${ac}"
  redirect: "http://commonchemistry.org/ChemicalDetail.aspx?ref=$id"
  description: "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information."
  subject: "structure; chemical"
  location: "USA"
  synonym: "CAS Number; CAS Registry Number; Chemical Abstracts Service; CASRN"
  institution: "American Chemistry Society, Washington, DC"
  prefixed: "false"
  test: "50-00-0"
  probe: "http://commonchemistry.org/ChemicalDetail.aspx?ref=50-00-0"
  pattern: "^\\d{1,7}\\-\\d{2}\\-\\d$"
  state: "100:Up"
  more: "http://commonchemistry.org"

kegg.genome:
  type: "scheme"
  name: "KEGG Genome Database"
  alias: 
  provider: 
  provider_id: "MIR:00100303"
  sort_score: "6"
  primary: "true"
  forward: "http://www.kegg.jp/entry/${ac}"
  redirect: "http://www.kegg.jp/entry/$id"
  description: "KEGG Genome is a collection of organisms whose genomes have been completely sequenced."
  subject: "genome"
  location: "Japan"
  synonym: "KEGG Organism; KEGG"
  institution: "Kyoto University Bioinformatics Center, Kyoto"
  prefixed: "false"
  test: "eco"
  probe: "http://www.kegg.jp/entry/eco"
  pattern: "^(T0\\d+|\\w{3,5})$"
  state: "100:Up"
  more: "http://www.genome.jp/kegg/catalog/org_list.html"

kegg.metagenome:
  type: "scheme"
  name: "KEGG Metagenome Database"
  alias: 
  provider: 
  provider_id: "MIR:00100304"
  sort_score: "6"
  primary: "true"
  forward: "http://www.kegg.jp/entry/${ac}"
  redirect: "http://www.kegg.jp/entry/$id"
  description: "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species."
  subject: "genome"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center, Kyoto"
  prefixed: "false"
  test: "T30002"
  probe: "http://www.kegg.jp/entry/T30002"
  pattern: "^T3\\d+$"
  state: "100:Up"
  more: "http://www.genome.jp/kegg/catalog/org_list3.html"

narcis:
  type: "scheme"
  name: "NARCIS at The Hague"
  alias: 
  provider: 
  provider_id: "MIR:00100306"
  sort_score: "1"
  primary: "false"
  forward: "http://www.narcis.nl/publication/RecordID/${ac}"
  redirect: "http://www.narcis.nl/publication/RecordID/$id"
  description: "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases."
  subject: "bibliography"
  location: "Holland"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "NARCIS, Royal Netherlands Academy of Science and Arts"
  prefixed: "false"
  test: "oai:cwi.nl:4725"
  probe: "http://www.narcis.nl/publication/RecordID/oai:cwi.nl:4725"
  pattern: "^oai\\:cwi\\.nl\\:\\d+$"
  state: "98:Up"
  more: "http://www.narcis.nl/?Language=en"

jcsd:
  type: "scheme"
  name: "Japan Chemical Substance Dictionary"
  alias: 
  provider: 
  provider_id: "MIR:00100307"
  sort_score: "1"
  primary: "false"
  forward: "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=${ac}"
  redirect: "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$id"
  description: "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST)."
  subject: "chemical; structure"
  location: "Japan"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "Japan Science and Technology Agency"
  prefixed: "false"
  test: "J55.713G"
  probe: "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J55.713G"
  pattern: "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$"
  state: "53:Down"
  more: "http://jglobal.jst.go.jp/en/"

pw:
  type: "scheme"
  name: "Pathway Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100311"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/PW/PW:${ac}"
  redirect: "http://purl.bioontology.org/ontology/PW/PW:$id"
  description: "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions."
  subject: "pathway; mammalian; ontology; human"
  location: "USA"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "National Center for Biomedical Ontology, Stanford, California"
  prefixed: "true"
  test: "0000208"
  probe: "http://purl.bioontology.org/ontology/PW/PW:0000208"
  pattern: "^PW:\\d{7}$"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/PW"

bptl/pw:
  type: "synonym"
  for: "pw"

z042/pw:
  type: "scheme"
  name: "Pathway Ontology at Rat Genome Database"
  alias: 
  provider: "z042"
  provider_id: "MIR:00100309"
  sort_score: "4"
  primary: "false"
  forward: "http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=PW:${ac}"
  redirect: "http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=PW:$id"
  description: "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions."
  subject: "pathway; mammalian; ontology; human"
  location: "USA"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "Medical College of Wisconsin, Wisconsin"
  prefixed: "true"
  test: "0000208"
  probe: "http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=PW:0000208"
  pattern: "^PW:\\d{7}$"
  state: "100:Up"
  more: "http://rgd.mcw.edu/rgdweb/ontology/search.html"

ols/pw:
  type: "scheme"
  name: "Pathway Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100310"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/pw/terms?obo_id=PW:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/pw/terms?obo_id=PW:$id"
  description: "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions."
  subject: "pathway; mammalian; ontology; human"
  location: "UK"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000208"
  probe: "https://www.ebi.ac.uk/ols/ontologies/pw/terms?obo_id=PW:0000208"
  pattern: "^PW:\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/pw"

insdc.sra:
  type: "scheme"
  name: "Sequence Read Archive at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100312"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/sra/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/sra/$id"
  description: "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database."
  subject: "sequence"
  location: "USA"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "SRX000007"
  probe: "https://www.ncbi.nlm.nih.gov/sra/SRX000007"
  pattern: "^[SED]R[APRSXZ]\\d+$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/sra"

ncbi/insdc.sra:
  type: "synonym"
  for: "insdc.sra"

ebi/insdc.sra:
  type: "scheme"
  name: "European Nucleotide Archive (ENA)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100313"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ena/data/view/${ac}"
  redirect: "https://www.ebi.ac.uk/ena/data/view/$id"
  description: "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database."
  subject: "sequence"
  location: "UK"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "SRX000007"
  probe: "https://www.ebi.ac.uk/ena/data/view/SRX000007"
  pattern: "^[SED]R[APRSXZ]\\d+$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/ena"

ddbj/insdc.sra:
  type: "scheme"
  name: "DDBJ Sequence Read Archive (DRA)"
  alias: 
  provider: "ddbj"
  provider_id: "MIR:00100314"
  sort_score: "1"
  primary: "false"
  forward: "http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=${ac}"
  redirect: "http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=$id"
  description: "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database."
  subject: "sequence"
  location: "Japan"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "DNA Data Bank of Japan, Mishima, Shizuoka"
  prefixed: "false"
  test: "SRX000007"
  probe: "http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=SRX000007"
  pattern: "^[SED]R[APRSXZ]\\d+$"
  state: "95:Up"
  more: "http://trace.ddbj.nig.ac.jp/dra/"

scretf:
  type: "scheme"
  name: "ScerTF at Washington University"
  alias: 
  provider: 
  provider_id: "MIR:00100315"
  sort_score: "4"
  primary: "false"
  forward: "http://stormo.wustl.edu/ScerTF/details/${ac}/"
  redirect: "http://stormo.wustl.edu/ScerTF/details/$id/"
  description: "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor."
  subject: "sequence; nucleotide; domain"
  location: "USA"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "Department of Genetics, Washington University Medical School, St Louis, Missouri"
  prefixed: "false"
  test: "RSC3"
  probe: "http://stormo.wustl.edu/ScerTF/details/RSC3/"
  pattern: "^\\w+$"
  state: "100:Up"
  more: "http://stormo.wustl.edu/ScerTF/"

pharmgkb.gene:
  type: "scheme"
  name: "PharmGKB Gene at Stanford"
  alias: 
  provider: 
  provider_id: "MIR:00100316"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pharmgkb.org/gene/${ac}"
  redirect: "http://www.pharmgkb.org/gene/$id"
  description: "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."
  subject: "pharmacogenomics; gene"
  location: "USA"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "Department of Genetics, School of Medicine, Stanford University, Stanford, California"
  prefixed: "false"
  test: "PA131"
  probe: "http://www.pharmgkb.org/gene/PA131"
  pattern: "^PA\\w+$"
  state: "59:Down"
  more: "http://www.pharmgkb.org/"

mirnest:
  type: "scheme"
  name: "miRNEST at Adam Mickiewicz University"
  alias: 
  provider: 
  provider_id: "MIR:00100317"
  sort_score: "1"
  primary: "false"
  forward: "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=${ac}"
  redirect: "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$id"
  description: "miRNEST is a database of animal, plant and virus microRNAs, containing  miRNA predictions conducted on Expressed Sequence Tags of animal and  plant species."
  subject: "expression"
  location: "Poland"
  synonym: "National Academic Research and Collaborations Information System"
  institution: "Institute of Molecular Biology, Adam Mickiewicz University, Poznan"
  prefixed: "false"
  test: "MNEST029358"
  probe: "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=MNEST029358"
  pattern: "^MNEST\\d+$"
  state: "94:Up"
  more: "http://rhesus.amu.edu.pl/mirnest/copy/"

napp:
  type: "scheme"
  name: "NAPP at CNRS"
  alias: 
  provider: 
  provider_id: "MIR:00100318"
  sort_score: "1"
  primary: "false"
  forward: "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=${ac}"
  redirect: "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$id"
  description: "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters."
  subject: "nucleotide; clustering"
  location: "France"
  synonym: "Nucleic Acid Phylogenetic Profiling"
  institution: "Institut de G&#xE9;n&#xE9;tique et Microbiologie, UMR 8621, CNRS, Universit&#xE9; Paris Sud, Paris"
  prefixed: "false"
  test: "351"
  probe: "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=351"
  pattern: "^\\d+$"
  state: "96:Up"
  more: "http://napp.u-psud.fr/"

noncodev3:
  type: "scheme"
  name: "NONCODE at Chinese Academy of Sciences"
  alias: 
  provider: 
  provider_id: "MIR:00100319"
  sort_score: "1"
  primary: "false"
  forward: "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=${ac}"
  redirect: "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$id"
  description: "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4."
  subject: "expression; nucleotide"
  location: "China"
  synonym: "Nucleic Acid Phylogenetic Profiling"
  institution: "Bioinformatics Research Group, Chinese Academy of Sciences, Beijing"
  prefixed: "false"
  test: "377550"
  probe: "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=377550"
  pattern: "^\\d+$"
  state: "46:Down"
  more: "http://www.noncode.org/"

virsirna:
  type: "scheme"
  name: "VIRsiRNA at Institute of Microbial Technology"
  alias: 
  provider: 
  provider_id: "MIR:00100320"
  sort_score: "1"
  primary: "false"
  forward: "http://crdd.osdd.net/servers/virsirnadb/record.php?details=${ac}"
  redirect: "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$id"
  description: "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region."
  subject: "nucleotide; mammalian"
  location: "India"
  synonym: "VIRsiRNAdb; Virus siRNA database"
  institution: "Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR),  Chandigarh, India"
  prefixed: "false"
  test: "virsi1909"
  probe: "http://crdd.osdd.net/servers/virsirnadb/record.php?details=virsi1909"
  pattern: "^virsi\\d+$"
  state: "98:Up"
  more: "http://crdd.osdd.net/servers/virsirnadb"

elm:
  type: "scheme"
  name: "ELM at EMBL (Germany)"
  alias: 
  provider: 
  provider_id: "MIR:00100321"
  sort_score: "1"
  primary: "false"
  forward: "http://elm.eu.org/elms/elmPages/${ac}.html"
  redirect: "http://elm.eu.org/elms/elmPages/$id.html"
  description: "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances."
  subject: "eukaryotic; domain; protein"
  location: "Germany"
  synonym: "Eukaryotic Linear Motifs"
  institution: "Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg"
  prefixed: "false"
  test: "CLV_MEL_PAP_1"
  probe: "http://elm.eu.org/elms/elmPages/CLV_MEL_PAP_1.html"
  pattern: "^[A-Za-z_0-9]+$"
  state: "99:Up"
  more: "http://elm.eu.org/"

mimodb:
  type: "scheme"
  name: "BDB at University of Electronic Science and Technology of China"
  alias: 
  provider: 
  provider_id: "MIR:00100322"
  sort_score: "1"
  primary: "false"
  forward: "http://immunet.cn/bdb/index.php/mimoset/${ac}"
  redirect: "http://immunet.cn/bdb/index.php/mimoset/$id"
  description: "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank."
  subject: "interaction; protein"
  location: "China"
  synonym: "BDB; Biopanning Data Bank; Mimotope Database"
  institution: "Key Laboratory for Neuroinformation of Ministry of Education, University of Electronic Science and Technology of China, Sichuan"
  prefixed: "false"
  test: "1"
  probe: "http://immunet.cn/bdb/index.php/mimoset/1"
  pattern: "^\\d+$"
  state: "92:Up"
  more: "http://immunet.cn/bdb/"

sitex:
  type: "scheme"
  name: "SitEx at Novosibirsk State University"
  alias: 
  provider: 
  provider_id: "MIR:00100323"
  sort_score: "1"
  primary: "false"
  forward: "http://www-bionet.sscc.ru/sitex/index.php?siteid=${ac}"
  redirect: "http://www-bionet.sscc.ru/sitex/index.php?siteid=$id"
  description: "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments."
  subject: "structure; domain; eukaryotic; sequence"
  location: "Russia"
  synonym: "BDB; Biopanning Data Bank; Mimotope Database"
  institution: "Novosibirsk State University, Novosibirsk"
  prefixed: "false"
  test: "1000"
  probe: "http://www-bionet.sscc.ru/sitex/index.php?siteid=1000"
  pattern: "^\\d+$"
  state: "58:Down"
  more: "http://www-bionet.sscc.ru/sitex/"

bykdb:
  type: "scheme"
  name: "BYKdb at CNRS"
  alias: 
  provider: 
  provider_id: "MIR:00100324"
  sort_score: "1"
  primary: "false"
  forward: "https://bykdb.ibcp.fr/data/html/annotated/${ac}.html"
  redirect: "https://bykdb.ibcp.fr/data/html/annotated/$id.html"
  description: "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases,  providing structural and functional information."
  subject: "sequence; microbial; domain"
  location: "France"
  synonym: "Bacterial protein tYrosine Kinase database"
  institution: "Unit&#xE9; Bases Mol&#xE9;culaires et Structurales des Syst&#xE8;mes Infectieux; CNRS - Universit&#xE9; Claude Bernard, Lyon"
  prefixed: "false"
  test: "A0A009E7X8"
  probe: "https://bykdb.ibcp.fr/data/html/annotated/A0A009E7X8.html"
  pattern: "^[A-Z0-9]+$"
  state: "66:Up"
  more: "https://bykdb.ibcp.fr/BYKdb/"

conoserver:
  type: "scheme"
  name: "ConoServer at University of Queensland"
  alias: 
  provider: 
  provider_id: "MIR:00100325"
  sort_score: "1"
  primary: "false"
  forward: "http://www.conoserver.org/?page=card&table=protein&id=${ac}"
  redirect: "http://www.conoserver.org/?page=card&table=protein&id=$id"
  description: "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails."
  subject: "drug; protein"
  location: "Australia"
  synonym: "Bacterial protein tYrosine Kinase database"
  institution: "Institute for Molecular Bioscience, The University of Queensland, Brisbane"
  prefixed: "false"
  test: "2639"
  probe: "http://www.conoserver.org/?page=card&table=protein&id=2639"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.conoserver.org/"

topfind:
  type: "scheme"
  name: "TopFind at University of British Columbia"
  alias: 
  provider: 
  provider_id: "MIR:00100326"
  sort_score: "1"
  primary: "false"
  forward: "http://clipserve.clip.ubc.ca/topfind/proteins/${ac}"
  redirect: "http://clipserve.clip.ubc.ca/topfind/proteins/$id"
  description: "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli."
  subject: "protein; domain"
  location: "Canada"
  synonym: "Bacterial protein tYrosine Kinase database"
  institution: "Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver"
  prefixed: "false"
  test: "Q9UKQ2"
  probe: "http://clipserve.clip.ubc.ca/topfind/proteins/Q9UKQ2"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"
  state: "94:Up"
  more: "http://clipserve.clip.ubc.ca/topfind"

mipmod:
  type: "scheme"
  name: "MIPModDB at Indian Institute of Technology Kanpur"
  alias: 
  provider: 
  provider_id: "MIR:00100327"
  sort_score: "1"
  primary: "false"
  forward: "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=${ac}"
  redirect: "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$id"
  description: "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures."
  subject: "protein; structure"
  location: "India"
  synonym: "Bacterial protein tYrosine Kinase database"
  institution: "Department of Biological Sciences and Bioengineering, Indian Institute of Technology Kanpur, Kanpur"
  prefixed: "false"
  test: "HOSAPI0399"
  probe: "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=HOSAPI0399"
  pattern: "^\\w+$"
  state: "95:Up"
  more: "http://bioinfo.iitk.ac.in/MIPModDB"

cellimage:
  type: "scheme"
  name: "Cell Image Library at American Society for Cell Biology"
  alias: 
  provider: 
  provider_id: "MIR:00100328"
  sort_score: "4"
  primary: "false"
  forward: "http://cellimagelibrary.org/images/${ac}"
  redirect: "http://cellimagelibrary.org/images/$id"
  description: "The Cell: An Image Library&#x2122; is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes."
  subject: "image library"
  location: "USA"
  synonym: "The Cell: An Image Library-CCDB; The Cell: An Image Library-Cell Centered Database; CIL"
  institution: "American Society for Cell Biology, Bethesda, Maryland and The National Center for Microscopy and Imaging Research, San Diego, California"
  prefixed: "false"
  test: "24801"
  probe: "http://cellimagelibrary.org/images/24801"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://cellimagelibrary.org/"

combine.specifications:
  type: "scheme"
  name: "COMBINE at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100329"
  sort_score: "2"
  primary: "false"
  forward: "https://co.mbine.org/specifications/${ac}"
  redirect: "https://co.mbine.org/specifications/$id"
  description: "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network."
  subject: 
  location: "UK"
  synonym: "The Cell: An Image Library-CCDB; The Cell: An Image Library-Cell Centered Database; CIL"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "sbgn.er.level-1.version-1.2"
  probe: "https://co.mbine.org/specifications/sbgn.er.level-1.version-1.2"
  pattern: "^\\w+(\\-|\\.|\\w)*$"
  state: "91:Unknown"
  more: "https://co.mbine.org/standards/"

ebi/combine.specifications:
  type: "synonym"
  for: "combine.specifications"

cabri:
  type: "scheme"
  name: "CABRI Cell Lines catalogue in Genova (SRS)"
  alias: 
  provider: 
  provider_id: "MIR:00100334"
  sort_score: "6"
  primary: "true"
  forward: "http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[${ac}]"
  redirect: "http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$id]"
  description: "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it."
  subject: "eukaryotic; microbial; catalogue"
  location: "Italy"
  synonym: "The Cell: An Image Library-CCDB; The Cell: An Image Library-Cell Centered Database; CIL"
  institution: "National Cancer Research Institute of Genova, Genova"
  prefixed: "false"
  test: "dsmz_mutz-id:ACC 291"
  probe: "http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[dsmz_mutz-id:ACC 291]"
  pattern: "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$"
  state: "96:Up"
  more: "http://www.cabri.org/"

z043/cabri:
  type: "scheme"
  name: "CABRI Cell Lines catalogue in Brussels (SRS)"
  alias: 
  provider: "z043"
  provider_id: "MIR:00100335"
  sort_score: "1"
  primary: "false"
  forward: "http://www.be.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[${ac}]"
  redirect: "http://www.be.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$id]"
  description: "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it."
  subject: "eukaryotic; microbial; catalogue"
  location: "Belgium"
  synonym: "The Cell: An Image Library-CCDB; The Cell: An Image Library-Cell Centered Database; CIL"
  institution: "BCCM, Brussels"
  prefixed: "false"
  test: "dsmz_mutz-id:ACC 291"
  probe: "http://www.be.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[dsmz_mutz-id:ACC 291]"
  pattern: "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$"
  state: "83:Down"
  more: "http://www.be.cabri.org/"

huge:
  type: "scheme"
  name: "HUGE at Kazusa DNA Research Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100339"
  sort_score: "1"
  primary: "false"
  forward: "http://www.kazusa.or.jp/huge/gfpage/${ac}/"
  redirect: "http://www.kazusa.or.jp/huge/gfpage/$id/"
  description: "The Human Unidentified Gene-Encoded (HUGE) protein database contains  results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."
  subject: "DNA; protein"
  location: "Japan"
  synonym: "The Cell: An Image Library-CCDB; The Cell: An Image Library-Cell Centered Database; CIL"
  institution: "Kazusa DNA Research Institute,  Chiba"
  prefixed: "false"
  test: "KIAA0001"
  probe: "http://www.kazusa.or.jp/huge/gfpage/KIAA0001/"
  pattern: "^KIAA\\d{4}$"
  state: "99:Up"
  more: "http://www.kazusa.or.jp/huge/"

bindingdb:
  type: "scheme"
  name: "BindingDB"
  alias: 
  provider: 
  provider_id: "MIR:00100340"
  sort_score: "6"
  primary: "true"
  forward: "http://www.bindingdb.org/compact/${ac}"
  redirect: "http://www.bindingdb.org/compact/$id"
  description: "BindingDB is the first public database of protein-small molecule affinity data."
  subject: "interaction; protein; drug"
  location: "USA"
  synonym: "The Cell: An Image Library-CCDB; The Cell: An Image Library-Cell Centered Database; CIL"
  institution: "University of California San Diego, La Jolla, California"
  prefixed: "false"
  test: "e999"
  probe: "http://www.bindingdb.org/compact/e999"
  pattern: "^\\w\\d+$"
  state: "94:Unknown"
  more: "https://www.bindingdb.org"

string:
  type: "scheme"
  name: "STRING Mirror at Heidelberg"
  alias: 
  provider: 
  provider_id: "MIR:00100342"
  sort_score: "1"
  primary: "false"
  forward: "http://string-db.org/interactions/${ac}"
  redirect: "http://string-db.org/interactions/$id"
  description: "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."
  subject: "protein; interaction"
  location: "Germany"
  synonym: "Search Tool for Retrieval of Interacting Genes/Proteins"
  institution: "European Molecular Biology Laboratory, Heidelberg"
  prefixed: "false"
  test: "P53350"
  probe: "http://string-db.org/interactions/P53350"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$"
  state: "67:Down"
  more: "http://string-db.org/"

z044/string:
  type: "scheme"
  name: "STRING at Heidelberg"
  alias: 
  provider: "z044"
  provider_id: "MIR:00100341"
  sort_score: "1"
  primary: "false"
  forward: "http://string.embl.de/interactions/${ac}"
  redirect: "http://string.embl.de/interactions/$id"
  description: "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."
  subject: "protein; interaction"
  location: "Germany"
  synonym: "Search Tool for Retrieval of Interacting Genes/Proteins"
  institution: "European Molecular Biology Laboratory, Heidelberg"
  prefixed: "false"
  test: "P53350"
  probe: "http://string.embl.de/interactions/P53350"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$"
  state: "67:Down"
  more: "http://string.embl.de/"

stitch:
  type: "scheme"
  name: "STITCH"
  alias: 
  provider: 
  provider_id: "MIR:00100343"
  sort_score: "1"
  primary: "false"
  forward: "http://stitch.embl.de/interactions/${ac}"
  redirect: "http://stitch.embl.de/interactions/$id"
  description: "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature."
  subject: "protein; chemical; interaction"
  location: "Germany"
  synonym: "Search Tool for Retrieval of Interacting Genes/Proteins"
  institution: "European Molecular Biology Laboratory, Heidelberg"
  prefixed: "false"
  test: "BQJCRHHNABKAKU"
  probe: "http://stitch.embl.de/interactions/BQJCRHHNABKAKU"
  pattern: "^\\w{14}$"
  state: "98:Up"
  more: "http://stitch.embl.de/"

atcvet:
  type: "scheme"
  name: "Anatomical Therapeutic Chemical Vet Index at WHO"
  alias: 
  provider: 
  provider_id: "MIR:00100344"
  sort_score: "1"
  primary: "false"
  forward: "http://www.whocc.no/atcvet/atcvet_index/?code=${ac}"
  redirect: "http://www.whocc.no/atcvet/atcvet_index/?code=$id"
  description: "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use."
  subject: "drug; classification"
  location: "Switzerland"
  synonym: "Search Tool for Retrieval of Interacting Genes/Proteins"
  institution: "World Health Organisation"
  prefixed: "false"
  test: "QJ51RV02"
  probe: "http://www.whocc.no/atcvet/atcvet_index/?code=QJ51RV02"
  pattern: "^Q[A-Z0-9]+$"
  state: "81:Up"
  more: "http://www.whocc.no/atcvet/atcvet_index/"

phenolexplorer:
  type: "scheme"
  name: "Phenol-Explorer Database on Phenol content of foods"
  alias: 
  provider: 
  provider_id: "MIR:00100345"
  sort_score: "1"
  primary: "false"
  forward: "http://phenol-explorer.eu/foods/${ac}"
  redirect: "http://phenol-explorer.eu/foods/$id"
  description: "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis."
  subject: "chemical"
  location: "France and Canada"
  synonym: "Search Tool for Retrieval of Interacting Genes/Proteins"
  institution: "INRA and University of Alberta"
  prefixed: "false"
  test: "75"
  probe: "http://phenol-explorer.eu/foods/75"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.phenol-explorer.eu/foods/"

snomedct:
  type: "scheme"
  name: "SNOMED-CT at The National Pathology Exchange"
  alias: 
  provider: 
  provider_id: "MIR:00100405"
  sort_score: "2"
  primary: "false"
  forward: "http://www.snomedbrowser.com/Codes/Details/${ac}"
  redirect: "http://www.snomedbrowser.com/Codes/Details/$id"
  description: "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc."
  subject: "controlled vocabulary"
  location: "UK"
  synonym: "Search Tool for Retrieval of Interacting Genes/Proteins"
  institution: "The Health Informatics Service, NHS, West Yorkshire"
  prefixed: "false"
  test: "284196006"
  probe: "http://www.snomedbrowser.com/Codes/Details/284196006"
  pattern: "^(\\w+)?\\d+$"
  state: "87:Up"
  more: "http://www.snomedbrowser.com/"

mesh.2012:
  type: "scheme"
  name: "MeSH at National Library of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100349"
  sort_score: "4"
  primary: "false"
  forward: "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=${ac}&view=expanded"
  redirect: "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$id&view=expanded"
  description: "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012."
  subject: "controlled vocabulary"
  location: "USA"
  synonym: "Medical Subject Headings 2012"
  institution: "U.S. National Library of Medicine, National Institute of Health, Maryland"
  prefixed: "false"
  test: "17186"
  probe: "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=17186&view=expanded"
  pattern: "^[A-Za-z0-9]+$"
  state: "63:Down"
  more: "http://www.nlm.nih.gov/mesh/"

knapsack:
  type: "scheme"
  name: "KnapSack at Nara Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100350"
  sort_score: "1"
  primary: "false"
  forward: "http://kanaya.naist.jp/knapsack_jsp/information.jsp?word=${ac}"
  redirect: "http://kanaya.naist.jp/knapsack_jsp/information.jsp?word=$id"
  description: "Knapsack provides information on metabolites and  the taxonomic class with which they are associated."
  subject: "metabolite"
  location: "Japan"
  synonym: "Medical Subject Headings 2012"
  institution: "Nara Institute of Science and Technology"
  prefixed: "false"
  test: "C00000001"
  probe: "http://kanaya.naist.jp/knapsack_jsp/information.jsp?word=C00000001"
  pattern: "^C\\d{8}"
  state: "99:Up"
  more: "http://kanaya.aist-nara.ac.jp/KNApSAcK/"

cdpd:
  type: "scheme"
  name: "Canadian Drug Identification Number at Health Canada"
  alias: 
  provider: 
  provider_id: "MIR:00100351"
  sort_score: "1"
  primary: "false"
  forward: "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=${ac}"
  redirect: "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$id"
  description: "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN)."
  subject: "drug; registry"
  location: "Canada"
  synonym: "DPD"
  institution: "Health Canada, Ottawa, Ontario"
  prefixed: "false"
  test: "63250"
  probe: "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=63250"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp"

massbank:
  type: "scheme"
  name: "MassBank in Japan"
  alias: 
  provider: 
  provider_id: "MIR:00100353"
  sort_score: "6"
  primary: "true"
  forward: "http://www.massbank.jp/jsp/FwdRecord.jsp?id=${ac}"
  redirect: "http://www.massbank.jp/jsp/FwdRecord.jsp?id=$id"
  description: "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da)."
  subject: "chemical; mass spectrometry; metabolite"
  location: "Japan"
  synonym: "DPD"
  institution: "The MassBank Consortium"
  prefixed: "false"
  test: "PB000166"
  probe: "http://www.massbank.jp/jsp/FwdRecord.jsp?id=PB000166"
  pattern: "^[A-Z]{2}[A-Z0-9][0-9]{5}$"
  state: "71:Down"
  more: "http://www.massbank.jp"

z045/massbank:
  type: "scheme"
  name: "MassBank in Europe"
  alias: 
  provider: "z045"
  provider_id: "MIR:00100666"
  sort_score: "1"
  primary: "false"
  forward: "http://www.massbank.eu/MassBank/jsp/FwdRecord.jsp?id=${ac}"
  redirect: "http://www.massbank.eu/MassBank/jsp/FwdRecord.jsp?id=$id"
  description: "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da)."
  subject: "chemical; mass spectrometry; metabolite"
  location: "Germany"
  synonym: "DPD"
  institution: "NORMAN Network and The MassBank Consortium"
  prefixed: "false"
  test: "PB000166"
  probe: "http://www.massbank.eu/MassBank/jsp/FwdRecord.jsp?id=PB000166"
  pattern: "^[A-Z]{2}[A-Z0-9][0-9]{5}$"
  state: "70:Down"
  more: "http://www.massbank.eu/"

gmd:
  type: "scheme"
  name: "Golm Metabolome Database at Max Planck Institute of Molecular Plant Physiology"
  alias: 
  provider: 
  provider_id: "MIR:00100354"
  sort_score: "1"
  primary: "false"
  forward: "http://gmd.mpimp-golm.mpg.de/Metabolites/${ac}.aspx"
  redirect: "http://gmd.mpimp-golm.mpg.de/Metabolites/$id.aspx"
  description: "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena."
  subject: "metabolite"
  location: "Germany"
  synonym: "GMD"
  institution: "Max Planck Institute of Molecular Plant Physiology, Potsdam"
  prefixed: "false"
  test: "68513255-fc44-4041-bc4b-4fd2fae7541d"
  probe: "http://gmd.mpimp-golm.mpg.de/Metabolites/68513255-fc44-4041-bc4b-4fd2fae7541d.aspx"
  pattern: "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"
  state: "99:Up"
  more: "http://gmd.mpimp-golm.mpg.de/"

homologene:
  type: "scheme"
  name: "Homologene at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100355"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ncbi.nlm.nih.gov/homologene/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/homologene/$id"
  description: "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes."
  subject: "eukaryotic; gene; clustering"
  location: "USA"
  synonym: "GMD"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "1000"
  probe: "https://www.ncbi.nlm.nih.gov/homologene/1000"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "https://www.ncbi.nlm.nih.gov/homologene/"

ncbi/homologene:
  type: "synonym"
  for: "homologene"

z046/homologene:
  type: "scheme"
  name: "Bio2RDF"
  alias: 
  provider: "z046"
  provider_id: "MIR:00100699"
  sort_score: "1"
  primary: "false"
  forward: "http://homologene.bio2rdf.org/describe/?url=http://bio2rdf.org/homologene:${ac}"
  redirect: "http://homologene.bio2rdf.org/describe/?url=http://bio2rdf.org/homologene:$id"
  description: "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes."
  subject: "eukaryotic; gene; clustering"
  location: 
  synonym: "GMD"
  institution: "Bio2RDF.org"
  prefixed: "false"
  test: "1000"
  probe: "http://homologene.bio2rdf.org/describe/?url=http://bio2rdf.org/homologene:1000"
  pattern: "^\\d+$"
  state: "58:Down"
  more: "http://homologene.bio2rdf.org/fct"

umbbd.compound:
  type: "scheme"
  name: "Biocatalysis/Biodegradation Database Mirror (Compound) at ETH Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100357"
  sort_score: "1"
  primary: "false"
  forward: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=c&compID=${ac}"
  redirect: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$id"
  description: "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information."
  subject: "metabolite; microbial"
  location: "Switzerland"
  synonym: "University of Minnesota Biocatalysis/Biodegradation Database (Compound)"
  institution: "ETH, Zurich"
  prefixed: "false"
  test: "c0001"
  probe: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=c&compID=c0001"
  pattern: "^c\\d+$"
  state: "100:Up"
  more: "http://umbbd.ethz.ch/"

abs:
  type: "scheme"
  name: "ABS at IMIM"
  alias: 
  provider: 
  provider_id: "MIR:00100358"
  sort_score: "1"
  primary: "false"
  forward: "http://genome.crg.es/datasets/abs2005/entries/${ac}.html"
  redirect: "http://genome.crg.es/datasets/abs2005/entries/$id.html"
  description: "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography."
  subject: "interaction; gene"
  location: "Spain"
  synonym: "Annotated regulatory Binding Sites database"
  institution: "Institut Municipal d'Investigaci&oacute; M&egrave;dica, Barcelona"
  prefixed: "false"
  test: "A0014"
  probe: "http://genome.crg.es/datasets/abs2005/entries/A0014.html"
  pattern: "^A\\d+$"
  state: "100:Up"
  more: "http://genome.crg.es/datasets/abs2005/"

apd:
  type: "scheme"
  name: "APD at Nebraska"
  alias: 
  provider: 
  provider_id: "MIR:00100359"
  sort_score: "4"
  primary: "false"
  forward: "http://aps.unmc.edu/AP/database/query_output.php?ID=${ac}"
  redirect: "http://aps.unmc.edu/AP/database/query_output.php?ID=$id"
  description: "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides."
  subject: "protein; drug"
  location: "USA"
  synonym: "Antimicrobial Peptide Database"
  institution: "Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha"
  prefixed: "false"
  test: "01001"
  probe: "http://aps.unmc.edu/AP/database/query_output.php?ID=01001"
  pattern: "^\\d{5}$"
  state: "100:Up"
  more: "http://aps.unmc.edu/AP/"

chemdb:
  type: "scheme"
  name: "ChemDB at UC Irvine"
  alias: 
  provider: 
  provider_id: "MIR:00100360"
  sort_score: "4"
  primary: "false"
  forward: "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=${ac}"
  redirect: "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$id"
  description: "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds."
  subject: "chemical"
  location: "USA"
  synonym: "Antimicrobial Peptide Database"
  institution: "University of California, Irvine"
  prefixed: "false"
  test: "3966782"
  probe: "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=3966782"
  pattern: "^\\d+$"
  state: "95:Up"
  more: "http://cdb.ics.uci.edu/"

dpv:
  type: "scheme"
  name: "DPV at Rothamsted"
  alias: 
  provider: 
  provider_id: "MIR:00100361"
  sort_score: "2"
  primary: "false"
  forward: "http://www.dpvweb.net/dpv/showdpv.php?dpvno=${ac}"
  redirect: "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$id"
  description: "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene."
  subject: "plant"
  location: "UK"
  synonym: "Description of Plant Viruses; DPVweb"
  institution: "Plant-Pathogen Interactions Division, Wheat Pathogenesis Programme, Rothamsted Research Harpenden, Hertfordshire"
  prefixed: "false"
  test: "100"
  probe: "http://www.dpvweb.net/dpv/showdpv.php?dpvno=100"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://www.dpvweb.net/"

iuphar.receptor:
  type: "scheme"
  name: "IUPHAR Receptor at University of Edinburgh"
  alias: 
  provider: 
  provider_id: "MIR:00100362"
  sort_score: "6"
  primary: "true"
  forward: "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=${ac}"
  redirect: "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$id"
  description: "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits."
  subject: "mammalian"
  location: "UK"
  synonym: "International Union  of Basic and Clinical Pharmacology; IUPHAR-DB"
  institution: "Centre for Cardiovascular Science, University of Edinburgh, Edinburgh"
  prefixed: "false"
  test: "101"
  probe: "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=101"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.guidetopharmacology.org/targets.jsp"

aceview.worm:
  type: "scheme"
  name: "AceView Worm at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100363"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$id"
  description: "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression."
  subject: "eukaryotic; gene"
  location: "USA"
  synonym: "AceView WormGenes"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "aap-1"
  probe: "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=aap-1"
  pattern: "^[a-z0-9-]+$"
  state: "98:Up"
  more: "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm"

ncbi/aceview.worm:
  type: "synonym"
  for: "aceview.worm"

asap:
  type: "scheme"
  name: "ASAP at University of Wisconsin"
  alias: 
  provider: 
  provider_id: "MIR:00100364"
  sort_score: "4"
  primary: "false"
  forward: "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=${ac}"
  redirect: "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$id"
  description: "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources."
  subject: "microbial; genome; gene"
  location: "USA"
  synonym: "AceView WormGenes"
  institution: "Animal Health and Biomedical Sciences, University of Wisconsin, Madison"
  prefixed: "false"
  test: "ABE-0009634"
  probe: "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=ABE-0009634"
  pattern: "^[A-Za-z0-9-]+$"
  state: "100:Unknown"
  more: "http://asap.ahabs.wisc.edu/asap/home.php"

atcc:
  type: "scheme"
  name: "ATCC in Virginia"
  alias: 
  provider: 
  provider_id: "MIR:00100365"
  sort_score: "4"
  primary: "false"
  forward: "http://www.lgcstandards-atcc.org/Products/All/${ac}.aspx"
  redirect: "http://www.lgcstandards-atcc.org/Products/All/$id.aspx"
  description: "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences."
  subject: "microbial; eukaryotic; catalogue"
  location: "USA"
  synonym: "American Type Culture Collection"
  institution: "American Type Culture Collection, Manassas, Virginia"
  prefixed: "false"
  test: "11303"
  probe: "http://www.lgcstandards-atcc.org/Products/All/11303.aspx"
  pattern: "^\\d+$"
  state: "96:Up"
  more: "http://www.atcc.org/"

bdgp.est:
  type: "scheme"
  name: "BDGP EST at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100366"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/nucest/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/nucest/$id"
  description: "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI)."
  subject: "expression; eukaryotic"
  location: "USA"
  synonym: "Berkeley Drosophila Genome Project EST"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "EY223054.1"
  probe: "https://www.ncbi.nlm.nih.gov/nucest/EY223054.1"
  pattern: "^\\w+(\\.)?(\\d+)?$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/dbEST/index.html"

ncbi/bdgp.est:
  type: "synonym"
  for: "bdgp.est"

dictybase.gene:
  type: "scheme"
  name: "Dictybase Gene at Northwestern University"
  alias: 
  provider: 
  provider_id: "MIR:00100367"
  sort_score: "4"
  primary: "false"
  forward: "http://dictybase.org/gene/${ac}"
  redirect: "http://dictybase.org/gene/$id"
  description: "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information."
  subject: "gene; plant"
  location: "USA"
  synonym: "Berkeley Drosophila Genome Project EST"
  institution: "Northwestern University Biomedical Informatics Center and Center for Genetic Medicine, Chicago, Illinois"
  prefixed: "false"
  test: "DDB_G0267522"
  probe: "http://dictybase.org/gene/DDB_G0267522"
  pattern: "^DDB_G\\d+$"
  state: "100:Up"
  more: "http://dictybase.org/"

imgt.ligm:
  type: "scheme"
  name: "IMGT LIGM at CNRS"
  alias: 
  provider: 
  provider_id: "MIR:00100428"
  sort_score: "6"
  primary: "true"
  forward: "http://www.imgt.org/ligmdb/view?id=${ac}"
  redirect: "http://www.imgt.org/ligmdb/view?id=$id"
  description: "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates."
  subject: "mammalian; immunogenetics"
  location: "France"
  synonym: "IMGT/LIGM-DB"
  institution: "CNRS, Montpellier University, Montpellier"
  prefixed: "false"
  test: "M94112"
  probe: "http://www.imgt.org/ligmdb/view?id=M94112"
  pattern: "^M\\d+$"
  state: "98:Up"
  more: "http://www.imgt.org/"

z047/imgt.ligm:
  type: "scheme"
  name: "IMGT LIGM through DKFZ (SRS)"
  alias: 
  provider: "z047"
  provider_id: "MIR:00100369"
  sort_score: "1"
  primary: "false"
  forward: "http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/srs7.1.3.1/wgetz?-id+4ktAl1fNMTA+-e+[IMGT:'${ac}']"
  redirect: "http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/srs7.1.3.1/wgetz?-id+4ktAl1fNMTA+-e+[IMGT:'$id']"
  description: "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates."
  subject: "mammalian; immunogenetics"
  location: "Germany"
  synonym: "IMGT/LIGM-DB"
  institution: "DKFZ TP3, Heidelberg"
  prefixed: "false"
  test: "M94112"
  probe: "http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/srs7.1.3.1/wgetz?-id+4ktAl1fNMTA+-e+[IMGT:'M94112']"
  pattern: "^M\\d+$"
  state: "70:Down"
  more: "http://genius.embnet.dkfz-heidelberg.de/"

worfdb:
  type: "scheme"
  name: "Worm Orf DB at Harvard"
  alias: 
  provider: 
  provider_id: "MIR:00100370"
  sort_score: "4"
  primary: "false"
  forward: "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=${ac}"
  redirect: "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$id"
  description: "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends)."
  subject: "eukaryotic; gene"
  location: "USA"
  synonym: "Worm Orf DB"
  institution: "Center for Cancer Systems Biology, Harvard Medical School, Massachusetts"
  prefixed: "false"
  test: "T01B6.1"
  probe: "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=T01B6.1"
  pattern: "^\\w+(\\.\\d+)?"
  state: "100:Up"
  more: "http://worfdb.dfci.harvard.edu/"

nextdb:
  type: "scheme"
  name: "NEXTDB at Shizuoka"
  alias: 
  provider: 
  provider_id: "MIR:00100371"
  sort_score: "1"
  primary: "false"
  forward: "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=${ac}"
  redirect: "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$id"
  description: "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones."
  subject: "expression; eukaryotic"
  location: "Japan"
  synonym: "Nematode Expression Pattern Database"
  institution: "National Institute of Genetics, Shizuoka"
  prefixed: "false"
  test: "6b1"
  probe: "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=6b1"
  pattern: "^[A-Za-z0-9]+$"
  state: "97:Up"
  more: "http://nematode.lab.nig.ac.jp/"

soybase:
  type: "scheme"
  name: "SoyBase at Iowa State University"
  alias: 
  provider: 
  provider_id: "MIR:00100373"
  sort_score: "4"
  primary: "false"
  forward: "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=${ac}"
  redirect: "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$id"
  description: "SoyBase is a repository for curated genetics, genomics and related data resources for soybean."
  subject: "plant; gene"
  location: "USA"
  synonym: "Nematode Expression Pattern Database"
  institution: "USDA-ARS-CICGRU, Iowa State University, Iowa"
  prefixed: "false"
  test: "BARC-013845-01256"
  probe: "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=BARC-013845-01256"
  pattern: "^\\w+(\\-)?\\w+(\\-)?\\w+$"
  state: "59:Down"
  more: "http://soybase.org/"

hamap:
  type: "scheme"
  name: "HAPMAP at Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100374"
  sort_score: "1"
  primary: "false"
  forward: "https://hamap.expasy.org/unirule/${ac}"
  redirect: "https://hamap.expasy.org/unirule/$id"
  description: "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries."
  subject: "annotation; microbial"
  location: "Switzerland"
  synonym: "High-quality Automated and Manual Annotation of microbial Proteomes"
  institution: "Swiss Institute of Bioinformatics, Geneva"
  prefixed: "false"
  test: "MF_01400"
  probe: "https://hamap.expasy.org/unirule/MF_01400"
  pattern: "^MF_\\d+$"
  state: "77:Down"
  more: "https://hamap.expasy.org/"

rouge:
  type: "scheme"
  name: "Rouge at Kazusa DNA Research Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100375"
  sort_score: "1"
  primary: "false"
  forward: "http://www.kazusa.or.jp/rouge/gfpage/${ac}/"
  redirect: "http://www.kazusa.or.jp/rouge/gfpage/$id/"
  description: "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."
  subject: "protein; gene; mammalian"
  location: "Japan"
  synonym: "Rodent Unidentified Gene-Encoded Large Proteins"
  institution: "Kazusa DNA Research Institute, Chiba"
  prefixed: "false"
  test: "mKIAA4200"
  probe: "http://www.kazusa.or.jp/rouge/gfpage/mKIAA4200/"
  pattern: "^m\\w+$"
  state: "99:Up"
  more: "http://www.kazusa.or.jp/rouge/"

arrayexpress.platform:
  type: "scheme"
  name: "ArrayExpress Platform at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100376"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/arrayexpress/arrays/${ac}"
  redirect: "https://www.ebi.ac.uk/arrayexpress/arrays/$id"
  description: "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results."
  subject: "microarray"
  location: "UK"
  synonym: "Rodent Unidentified Gene-Encoded Large Proteins"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "A-GEOD-50"
  probe: "https://www.ebi.ac.uk/arrayexpress/arrays/A-GEOD-50"
  pattern: "^[AEP]-\\w{4}-\\d+$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/arrayexpress/"

ebi/arrayexpress.platform:
  type: "synonym"
  for: "arrayexpress.platform"

cgsc:
  type: "scheme"
  name: "CGSC at Yale university"
  alias: 
  provider: 
  provider_id: "MIR:00100377"
  sort_score: "4"
  primary: "false"
  forward: "http://cgsc.biology.yale.edu/Site.php?ID=${ac}"
  redirect: "http://cgsc.biology.yale.edu/Site.php?ID=$id"
  description: "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature."
  subject: "strain; microbial"
  location: "USA"
  synonym: "Coli Genetic Stock Center"
  institution: "Dept. of Molecular, Cellular, and Developmental Biology, Yale University, Conneticut"
  prefixed: "false"
  test: "74"
  probe: "http://cgsc.biology.yale.edu/Site.php?ID=74"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://cgsc.biology.yale.edu/index.php"

dragondb.dna:
  type: "scheme"
  name: "DragonDB DNA at University of British Columbia"
  alias: 
  provider: 
  provider_id: "MIR:00100379"
  sort_score: "1"
  primary: "false"
  forward: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=${ac};class=DNA"
  redirect: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=DNA"
  description: "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information."
  subject: "plant; DNA"
  location: "Canada"
  synonym: "Coli Genetic Stock Center"
  institution: "University of British Columbia, Vancouver"
  prefixed: "false"
  test: "3hB06"
  probe: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=3hB06;class=DNA"
  pattern: "^\\d\\w+$"
  state: "53:Down"
  more: "http://www.antirrhinum.net/"

dragondb.protein:
  type: "scheme"
  name: "DragonDB Protein at University of British Columbia"
  alias: 
  provider: 
  provider_id: "MIR:00100380"
  sort_score: "1"
  primary: "false"
  forward: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=${ac};class=Peptide"
  redirect: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Peptide"
  description: "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information."
  subject: "plant; protein"
  location: "Canada"
  synonym: "Coli Genetic Stock Center"
  institution: "University of British Columbia, Vancouver"
  prefixed: "false"
  test: "AMDEFA"
  probe: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=AMDEFA;class=Peptide"
  pattern: "^\\w+$"
  state: "53:Down"
  more: "http://www.antirrhinum.net/"

dragondb.locus:
  type: "scheme"
  name: "DragonDB Locus at University of British Columbia"
  alias: 
  provider: 
  provider_id: "MIR:00100381"
  sort_score: "1"
  primary: "false"
  forward: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=${ac}&amp;class=Locus"
  redirect: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id&amp;class=Locus"
  description: "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information."
  subject: "DNA; plant"
  location: "Canada"
  synonym: "Coli Genetic Stock Center"
  institution: "University of British Columbia, Vancouver"
  prefixed: "false"
  test: "DEF"
  probe: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=DEF&amp;class=Locus"
  pattern: "^\\w+$"
  state: "53:Down"
  more: "http://www.antirrhinum.net/"

dragondb.allele:
  type: "scheme"
  name: "DragonDB Allele at University of British Columbia"
  alias: 
  provider: 
  provider_id: "MIR:00100382"
  sort_score: "1"
  primary: "false"
  forward: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=${ac}&amp;class=Allele"
  redirect: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id&amp;class=Allele"
  description: "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information."
  subject: "plant; gene"
  location: "Canada"
  synonym: "Coli Genetic Stock Center"
  institution: "University of British Columbia, Vancouver"
  prefixed: "false"
  test: "cho"
  probe: "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=cho&amp;class=Allele"
  pattern: "^\\w+$"
  state: "53:Down"
  more: "http://www.antirrhinum.net/"

issn:
  type: "scheme"
  name: "ISSN Portal"
  alias: 
  provider: 
  provider_id: "MIR:00100924"
  sort_score: "6"
  primary: "true"
  forward: "https://portal.issn.org/resource/ISSN/${ac}"
  redirect: "https://portal.issn.org/resource/ISSN/$id"
  description: "The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books."
  subject: "bibliography"
  location: "France"
  synonym: "Coli Genetic Stock Center"
  institution: "ISSN International Centre, Paris"
  prefixed: "false"
  test: "1776-3045"
  probe: "https://portal.issn.org/resource/ISSN/1776-3045"
  pattern: "^\\d{4}-\\d{3}[\\dX]$"
  state: "0:Unknown"
  more: "https://portal.issn.org"

z048/issn:
  type: "scheme"
  name: "ISSN at Library of Congress"
  alias: 
  provider: "z048"
  provider_id: "MIR:00100383"
  sort_score: "4"
  primary: "false"
  forward: "https://catalog.loc.gov/vwebv/search?searchCode=STNO&searchArg=${ac}&searchType=1&recCount=25"
  redirect: "https://catalog.loc.gov/vwebv/search?searchCode=STNO&searchArg=$id&searchType=1&recCount=25"
  description: "The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books."
  subject: "bibliography"
  location: "USA"
  synonym: "Coli Genetic Stock Center"
  institution: "Library of Congress Online Catalogue, Washington DC"
  prefixed: "false"
  test: "0745-4570"
  probe: "https://catalog.loc.gov/vwebv/search?searchCode=STNO&searchArg=0745-4570&searchType=1&recCount=25"
  pattern: "^\\d{4}-\\d{3}[\\dX]$"
  state: "0:Unknown"
  more: "http://catalog.loc.gov/webvoy.htm"

merops.family:
  type: "scheme"
  name: "Merops Family at Sanger Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100384"
  sort_score: "2"
  primary: "false"
  forward: "http://merops.sanger.ac.uk/cgi-bin/famsum?family=${ac}"
  redirect: "http://merops.sanger.ac.uk/cgi-bin/famsum?family=$id"
  description: "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families."
  subject: "interaction; enzyme; protein"
  location: "UK"
  synonym: "Coli Genetic Stock Center"
  institution: "Wellcome Trust Sanger Institute, Hinxton"
  prefixed: "false"
  test: "S1"
  probe: "http://merops.sanger.ac.uk/cgi-bin/famsum?family=S1"
  pattern: "^[SCTAGMNU]\\d+$"
  state: "67:Down"
  more: "http://merops.sanger.ac.uk/index.htm"

mo:
  type: "scheme"
  name: "MGED Ontology at BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100385"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/MO/${ac}"
  redirect: "http://purl.bioontology.org/ontology/MO/$id"
  description: "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data."
  subject: "ontology"
  location: "USA"
  synonym: "MO"
  institution: "National Center for Biomedical Ontology, Stanford University"
  prefixed: "false"
  test: "ArrayGroup"
  probe: "http://purl.bioontology.org/ontology/MO/ArrayGroup"
  pattern: "^\\w+$"
  state: "96:Up"
  more: "http://bioportal.bioontology.org/"

bptl/mo:
  type: "synonym"
  for: "mo"

ebi/mo:
  type: "scheme"
  name: "MGED Ontology at SourceForge"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100568"
  sort_score: "2"
  primary: "false"
  forward: "https://mged.sourceforge.net/ontologies/MGEDontology.php#${ac}"
  redirect: "https://mged.sourceforge.net/ontologies/MGEDontology.php#$id"
  description: "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data."
  subject: "ontology"
  location: "UK"
  synonym: "MO"
  institution: "(Ontology Working Group), European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "ArrayGroup"
  probe: "https://mged.sourceforge.net/ontologies/MGEDontology.php#ArrayGroup"
  pattern: "^\\w+$"
  state: "81:Down"
  more: "https://mged.sourceforge.net/ontologies/MGEDontology.php"

nasc:
  type: "scheme"
  name: "NASC at University of Nottingham"
  alias: 
  provider: 
  provider_id: "MIR:00100386"
  sort_score: "2"
  primary: "false"
  forward: "http://arabidopsis.info/StockInfo?NASC_id=${ac}"
  redirect: "http://arabidopsis.info/StockInfo?NASC_id=$id"
  description: "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community."
  subject: "plant; strain"
  location: "UK"
  synonym: "The Nottingham Arabidopsis Stock Centre"
  institution: "The Nottingham Arabidopsis Stock Centre, University of Nottingham"
  prefixed: "false"
  test: "N1899"
  probe: "http://arabidopsis.info/StockInfo?NASC_id=N1899"
  pattern: "^(\\w+)?\\d+$"
  state: "99:Up"
  more: "http://arabidopsis.info/"

niaest:
  type: "scheme"
  name: "NIAEST at National Institute on Aging"
  alias: 
  provider: 
  provider_id: "MIR:00100387"
  sort_score: "4"
  primary: "false"
  forward: "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=${ac}"
  redirect: "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$id"
  description: "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones."
  subject: "expression; gene; human"
  location: "USA"
  synonym: "The Nottingham Arabidopsis Stock Centre"
  institution: "National Institute on Aging, NIH"
  prefixed: "false"
  test: "J0705A10"
  probe: "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=J0705A10"
  pattern: "^\\w\\d{4}\\w\\d{2}(\\-[35])?$"
  state: "40:Down"
  more: "http://lgsun.grc.nia.nih.gov/cDNA/"

pazar:
  type: "scheme"
  name: "Pazar Transcription Factor at University of British Columbia"
  alias: 
  provider: 
  provider_id: "MIR:00100388"
  sort_score: "1"
  primary: "false"
  forward: "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=${ac}"
  redirect: "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$id"
  description: "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors."
  subject: "DNA; interaction; protein"
  location: "Canada"
  synonym: "Pazar Database"
  institution: "Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver"
  prefixed: "false"
  test: "TF0001053"
  probe: "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=TF0001053"
  pattern: "^TF\\w+$"
  state: "82:Down"
  more: "http://www.pazar.info/"

po:
  type: "scheme"
  name: "Plant Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100390"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/PO/PO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/PO/PO:$id"
  description: "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data."
  subject: "ontology; plant"
  location: "USA"
  synonym: "PO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0009089"
  probe: "http://purl.bioontology.org/ontology/PO/PO:0009089"
  pattern: "^PO:\\d+$"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/PO"

bptl/po:
  type: "synonym"
  for: "po"

amigo/po:
  type: "scheme"
  name: "Plant Ontology through Amigo"
  alias: 
  provider: "amigo"
  provider_id: "MIR:00100389"
  sort_score: "4"
  primary: "false"
  forward: "http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:${ac}"
  redirect: "http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:$id"
  description: "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data."
  subject: "ontology; plant"
  location: "USA"
  synonym: "PO"
  institution: "Cold Spring Harbor Laboratory, Cold Spring Harbor, New York"
  prefixed: "true"
  test: "0009089"
  probe: "http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:0009089"
  pattern: "^PO:\\d+$"
  state: "100:Up"
  more: "http://www.plantontology.org/"

ols/po:
  type: "scheme"
  name: "Plant Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100676"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/po/terms?obo_id=PO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/po/terms?obo_id=PO:$id"
  description: "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data."
  subject: "ontology; plant"
  location: "UK"
  synonym: "PO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0009089"
  probe: "https://www.ebi.ac.uk/ols/ontologies/po/terms?obo_id=PO:0009089"
  pattern: "^PO:\\d+$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/po"

rnamods:
  type: "scheme"
  name: "RNA Modification Database at University of Utah"
  alias: 
  provider: 
  provider_id: "MIR:00100391"
  sort_score: "4"
  primary: "false"
  forward: "http://mods.rna.albany.edu/mods/modifications/view/${ac}"
  redirect: "http://mods.rna.albany.edu/mods/modifications/view/$id"
  description: "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA."
  subject: "nucleotide"
  location: "USA"
  synonym: "RNAmods"
  institution: "Department of Medicinal Chemistry and Department of Biochemistry, University of Utah, Salt Lake City, Utah"
  prefixed: "false"
  test: "101"
  probe: "http://mods.rna.albany.edu/mods/modifications/view/101"
  pattern: "^\\d{3}$"
  state: "87:Down"
  more: "http://rna-mdb.cas.albany.edu/RNAmods/rnaover.htm"

treebase:
  type: "scheme"
  name: "TreeBASE (hosted at National Evolutionary Synthesis Center)"
  alias: 
  provider: 
  provider_id: "MIR:00100395"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.org/phylo/treebase/phylows/study/${ac}?format=html"
  redirect: "http://purl.org/phylo/treebase/phylows/study/$id?format=html"
  description: "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc."
  subject: "clustering"
  location: "USA"
  synonym: "RNAmods"
  institution: "Phyloinformatics Research Foundation, Durham, North Carolina"
  prefixed: "false"
  test: "TB2:S1000"
  probe: "http://purl.org/phylo/treebase/phylows/study/TB2:S1000?format=html"
  pattern: "^TB[1,2]?:[A-Z][a-z]?\\d+$"
  state: "67:Up"
  more: "http://treebase.org/"

tgd:
  type: "scheme"
  name: "TGD at Stanford University"
  alias: 
  provider: 
  provider_id: "MIR:00100396"
  sort_score: "4"
  primary: "false"
  forward: "http://ciliate.org/index.php/feature/details/${ac}"
  redirect: "http://ciliate.org/index.php/feature/details/$id"
  description: "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature."
  subject: "sequence; gene; genome"
  location: "USA"
  synonym: "TGD"
  institution: "Department of Genetics, School of Medicine, Stanford University, Stanford, California"
  prefixed: "false"
  test: "TTHERM_00648910"
  probe: "http://ciliate.org/index.php/feature/details/TTHERM_00648910"
  pattern: "^TTHERM\\_\\d+$"
  state: "72:Down"
  more: "http://ciliate.org/index.php/"

tigrfam:
  type: "scheme"
  name: "TIGRFAM at JCVI"
  alias: 
  provider: 
  provider_id: "MIR:00100398"
  sort_score: "4"
  primary: "false"
  forward: "http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=${ac}"
  redirect: "http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=$id"
  description: "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins."
  subject: "protein; clustering"
  location: "USA"
  synonym: "TGD"
  institution: "The Institute for Genomic Research, Rockville, Maryland"
  prefixed: "false"
  test: "TIGR00010"
  probe: "http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=TIGR00010"
  pattern: "^TIGR\\d+$"
  state: "98:Up"
  more: "http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi"

atfdb.family:
  type: "scheme"
  name: "Animal TFDB at Hubei Bioinformatics & Molecular Imaging Key Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100399"
  sort_score: "1"
  primary: "false"
  forward: "http://www.bioguo.org/AnimalTFDB/family.php?fam=${ac}"
  redirect: "http://www.bioguo.org/AnimalTFDB/family.php?fam=$id"
  description: "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found."
  subject: "interaction; protein; DNA"
  location: "China"
  synonym: "Animal Transcription Factor Database"
  institution: "Hubei Bioinformatics and Molecular Imaging Key Laboratory, Wuhan"
  prefixed: "false"
  test: "CUT"
  probe: "http://www.bioguo.org/AnimalTFDB/family.php?fam=CUT"
  pattern: "^\\w+$"
  state: "68:Down"
  more: "http://www.bioguo.org/AnimalTFDB/family_index.php"

iuphar.family:
  type: "scheme"
  name: "The IUPHAR/BPS Guide to PHARMACOLOGY"
  alias: 
  provider: 
  provider_id: "MIR:00100708"
  sort_score: "2"
  primary: "false"
  forward: "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=${ac}"
  redirect: "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$id"
  description: "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits."
  subject: "schema.org; mammalian"
  location: "UK"
  synonym: "Animal Transcription Factor Database"
  institution: "International Union of Pharmacology, Edinburgh"
  prefixed: "false"
  test: "78"
  probe: "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=78"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://www.guidetopharmacology.org/"

dbg2introns:
  type: "scheme"
  name: "Bacterial Group II Introns at University of Calgary"
  alias: 
  provider: 
  provider_id: "MIR:00100401"
  sort_score: "1"
  primary: "false"
  forward: "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=${ac}"
  redirect: "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$id"
  description: "The Database for Bacterial Group II Introns  provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank."
  subject: "DNA; sequence"
  location: "Canada"
  synonym: "Database for Bacterial Group II Introns"
  institution: "Department of Biological Sciences, University of Calgary, Calgary, Alberta"
  prefixed: "false"
  test: "Cu.me.I1"
  probe: "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=Cu.me.I1"
  pattern: "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$"
  state: "96:Up"
  more: "http://webapps2.ucalgary.ca/~groupii/"

sdbs:
  type: "scheme"
  name: "SDBS at AIST"
  alias: 
  provider: 
  provider_id: "MIR:00100402"
  sort_score: "1"
  primary: "false"
  forward: "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=${ac}"
  redirect: "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$id"
  description: "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra."
  subject: "mass spectrometry; chemical"
  location: "Japan"
  synonym: "SDBS"
  institution: "National Institute of Advanced Industrial Science and Technology (AIST)"
  prefixed: "false"
  test: "4544"
  probe: "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=4544"
  pattern: "\\d+$"
  state: "0:Unknown"
  more: "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi"

vbase2:
  type: "scheme"
  name: "Vbase2 at German Research Centre for Biotechnology"
  alias: 
  provider: 
  provider_id: "MIR:00100403"
  sort_score: "1"
  primary: "false"
  forward: "http://www.vbase2.org/vgene.php?id=${ac}"
  redirect: "http://www.vbase2.org/vgene.php?id=$id"
  description: "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes."
  subject: "sequence; human; immunogenetics"
  location: "Germany"
  synonym: "SDBS"
  institution: "Department of Experimental Immunology, German Research Centre for Biotechnology, Braunschweig"
  prefixed: "false"
  test: "humIGHV025"
  probe: "http://www.vbase2.org/vgene.php?id=humIGHV025"
  pattern: "^\\w+$"
  state: "100:Up"
  more: "http://www.vbase2.org/vbase2.php"

spike.map:
  type: "scheme"
  name: "SPIKE database at Tel Aviv University"
  alias: 
  provider: 
  provider_id: "MIR:00100404"
  sort_score: "1"
  primary: "false"
  forward: "http://www.cs.tau.ac.il/~spike/maps/${ac}.html"
  redirect: "http://www.cs.tau.ac.il/~spike/maps/$id.html"
  description: "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps."
  subject: "pathway"
  location: "Israel"
  synonym: "Signaling Pathways Integrated Knowledge Engine"
  institution: "School of Computer Sciences and School of Medicine, Tel Aviv University"
  prefixed: "false"
  test: "spike00001"
  probe: "http://www.cs.tau.ac.il/~spike/maps/spike00001.html"
  pattern: "^spike\\d{5}$"
  state: "100:Up"
  more: "http://www.cs.tau.ac.il/~spike/"

metlin:
  type: "scheme"
  name: "METLIN at Scripps Center, Molecular Biology and Center for Mass Spectrometry, La Jolla"
  alias: 
  provider: 
  provider_id: "MIR:00100406"
  sort_score: "4"
  primary: "false"
  forward: "http://metlin.scripps.edu/metabo_info.php?molid=${ac}"
  redirect: "http://metlin.scripps.edu/metabo_info.php?molid=$id"
  description: "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry."
  subject: "mass spectrometry; metabolite"
  location: "USA"
  synonym: "Metabolite and Tandem Mass Spectrometry Database"
  institution: "Scripps Research Institute, San Diego"
  prefixed: "false"
  test: "1455"
  probe: "http://metlin.scripps.edu/metabo_info.php?molid=1455"
  pattern: "^\\d{4}$"
  state: "42:Down"
  more: "http://masspec.scripps.edu/"

genecards:
  type: "scheme"
  name: "GeneCards at Weizmann Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100407"
  sort_score: "6"
  primary: "true"
  forward: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=${ac}"
  redirect: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$id"
  description: "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene."
  subject: "human; gene"
  location: "Israel"
  synonym: "Metabolite and Tandem Mass Spectrometry Database"
  institution: "Department of Molecular Genetics, Weizmann Institute of Science, Rehovot"
  prefixed: "false"
  test: "ABL1"
  probe: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ABL1"
  pattern: "^[A-Za-z-0-9_]+(\\@)?$"
  state: "71:Unknown"
  more: "http://www.genecards.org/"

mmrrc:
  type: "scheme"
  name: "MMRRC  at University of North Carolina"
  alias: 
  provider: 
  provider_id: "MIR:00100414"
  sort_score: "4"
  primary: "false"
  forward: "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=${ac}"
  redirect: "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$id"
  description: "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections."
  subject: "catalogue; strain; mammalian"
  location: "USA"
  synonym: "Mutant Mouse Regional Resource Centers"
  institution: "University of North Carolina"
  prefixed: "false"
  test: "70"
  probe: "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=70"
  pattern: "^\\d+$"
  state: "91:Probably up"
  more: "http://www.mmrrc.org/"

umbbd.reaction:
  type: "scheme"
  name: "Biocatalysis/Biodegradation Database Mirror (Reaction) at ETH Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100416"
  sort_score: "1"
  primary: "false"
  forward: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=${ac}"
  redirect: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$id"
  description: "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information."
  subject: "reaction; microbial"
  location: "Switzerland"
  synonym: "University of Minnesota Biocatalysis/Biodegradation Database (Reaction)"
  institution: "ETH, Zurich"
  prefixed: "false"
  test: "r0001"
  probe: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=r0001"
  pattern: "^r\\d+$"
  state: "100:Up"
  more: "http://umbbd.ethz.ch/"

umbbd.enzyme:
  type: "scheme"
  name: "Biocatalysis/Biodegradation Database Mirror (Enzyme) at ETH Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100418"
  sort_score: "1"
  primary: "false"
  forward: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=${ac}"
  redirect: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$id"
  description: "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information."
  subject: "enzyme; microbial"
  location: "Switzerland"
  synonym: "University of Minnesota Biocatalysis/Biodegradation Database (Enzyme)"
  institution: "ETH, Zurich"
  prefixed: "false"
  test: "e0333"
  probe: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=e0333"
  pattern: "^e\\d+$"
  state: "100:Up"
  more: "http://umbbd.ethz.ch/"

umbbd.pathway:
  type: "scheme"
  name: "Biocatalysis/Biodegradation Database Mirror (Pathway) at ETH Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100420"
  sort_score: "1"
  primary: "false"
  forward: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=${ac}"
  redirect: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$id"
  description: "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information."
  subject: "microbial; pathway"
  location: "Switzerland"
  synonym: "University of Minnesota Biocatalysis/Biodegradation Database (Pathway)"
  institution: "ETH, Zurich"
  prefixed: "false"
  test: "ala"
  probe: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=ala"
  pattern: "^\\w+$"
  state: "100:Up"
  more: "http://umbbd.ethz.ch/"

umbbd.rule:
  type: "scheme"
  name: "Biocatalysis/Biodegradation Database Mirror (Biotransformation Rule) at ETH Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100421"
  sort_score: "1"
  primary: "false"
  forward: "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=${ac}"
  redirect: "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$id"
  description: "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules."
  subject: "reaction; microbial"
  location: "Switzerland"
  synonym: "University of Minnesota Biocatalysis/Biodegradation Database (Pathway)"
  institution: "ETH, Zurich"
  prefixed: "false"
  test: "bt0001"
  probe: "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=bt0001"
  pattern: "^bt\\d+$"
  state: "100:Up"
  more: "http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules"

mirex:
  type: "scheme"
  name: "mirEX at Adam Mickiewicz University"
  alias: 
  provider: 
  provider_id: "MIR:00100423"
  sort_score: "1"
  primary: "false"
  forward: "http://comgen.pl/mirex1/?page=results/record&name=${ac}&exref=pp2a&limit=yes"
  redirect: "http://comgen.pl/mirex1/?page=results/record&name=$id&exref=pp2a&limit=yes"
  description: "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT&#x2013;qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages."
  subject: "gene; plant; expression"
  location: "Poland"
  synonym: "University of Minnesota Biocatalysis/Biodegradation Database (Pathway)"
  institution: "Institute of Molecular Biology, Adam Mickiewicz University, Poznan"
  prefixed: "false"
  test: "165a"
  probe: "http://comgen.pl/mirex1/?page=results/record&name=165a&exref=pp2a&limit=yes"
  pattern: "^\\d+(\\w+)?$"
  state: "79:Up"
  more: "http://comgen.pl/mirex/?page=home"

dictybase.est:
  type: "scheme"
  name: "Dictybase Gene at Northwestern University"
  alias: 
  provider: 
  provider_id: "MIR:00100424"
  sort_score: "4"
  primary: "false"
  forward: "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=${ac}"
  redirect: "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$id"
  description: "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information."
  subject: "sequence; DNA; plant"
  location: "USA"
  synonym: "University of Minnesota Biocatalysis/Biodegradation Database (Pathway)"
  institution: "Northwestern University Biomedical Informatics Center and Center for Genetic Medicine, Chicago, Illinois"
  prefixed: "false"
  test: "DDB0016567"
  probe: "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=DDB0016567"
  pattern: "^DDB\\d+$"
  state: "100:Up"
  more: "http://dictybase.org/"

imgt.hla:
  type: "scheme"
  name: "IMGT HLA at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100425"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?${ac}"
  redirect: "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$id"
  description: "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature."
  subject: "human; immunogenetics"
  location: "UK"
  synonym: "IPD IMGT/HLA"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "A*01:01:01:01"
  probe: "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?A*01:01:01:01"
  pattern: "^[A-Z0-9*:]+$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/imgt/hla/allele.html"

ebi/imgt.hla:
  type: "synonym"
  for: "imgt.hla"

bdsc:
  type: "scheme"
  name: "BDSC at Indiana University"
  alias: 
  provider: 
  provider_id: "MIR:00100426"
  sort_score: "4"
  primary: "false"
  forward: "https://bdsc.indiana.edu/stocks/${ac}"
  redirect: "https://bdsc.indiana.edu/stocks/$id"
  description: "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research."
  subject: "eukaryotic; strain"
  location: "USA"
  synonym: "Bloomington Drosophila Stock Center at Indiana University"
  institution: "Department of Biology, Indiana University, Bloomington"
  prefixed: "false"
  test: "33607"
  probe: "https://bdsc.indiana.edu/stocks/33607"
  pattern: "^\\d+$"
  state: "84:Up"
  more: "https://bdsc.indiana.edu/about/mission.html"

opm:
  type: "scheme"
  name: "OPM at University of Michigan"
  alias: 
  provider: 
  provider_id: "MIR:00100427"
  sort_score: "4"
  primary: "false"
  forward: "http://opm.phar.umich.edu/protein.php?pdbid=${ac}"
  redirect: "http://opm.phar.umich.edu/protein.php?pdbid=$id"
  description: "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization."
  subject: "protein; structure"
  location: "USA"
  synonym: "Orientations of Proteins in Membranes"
  institution: "Department of Medicinal Chemistry, College of Pharmacy, University of Michigan"
  prefixed: "false"
  test: "1h68"
  probe: "http://opm.phar.umich.edu/protein.php?pdbid=1h68"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "84:Down"
  more: "http://opm.phar.umich.edu/"

allergome:
  type: "scheme"
  name: "Allergome at Rome"
  alias: 
  provider: 
  provider_id: "MIR:00100429"
  sort_score: "1"
  primary: "false"
  forward: "http://www.allergome.org/script/dettaglio.php?id_molecule=${ac}"
  redirect: "http://www.allergome.org/script/dettaglio.php?id_molecule=$id"
  description: "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources."
  subject: "chemical; human"
  location: "Italy"
  synonym: "Orientations of Proteins in Membranes"
  institution: "Center for Clinical and Experimental Allergology, Rome"
  prefixed: "false"
  test: "1948"
  probe: "http://www.allergome.org/script/dettaglio.php?id_molecule=1948"
  pattern: "^\\d+$"
  state: "95:Probably up"
  more: "http://www.allergome.org/"

pombase:
  type: "scheme"
  name: "PomBase at University of Cambridge"
  alias: 
  provider: 
  provider_id: "MIR:00100430"
  sort_score: "2"
  primary: "false"
  forward: "http://www.pombase.org/spombe/result/${ac}"
  redirect: "http://www.pombase.org/spombe/result/$id"
  description: "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets."
  subject: "genome; nucleotide; eukaryotic"
  location: "UK"
  synonym: "Orientations of Proteins in Membranes"
  institution: "Cambridge Systems Biology Centre, Department of Biochemistry, University of Cambridge"
  prefixed: "false"
  test: "SPCC13B11.01"
  probe: "http://www.pombase.org/spombe/result/SPCC13B11.01"
  pattern: "^S\\w+(\\.)?\\w+(\\.)?$"
  state: "73:Down"
  more: "http://www.pombase.org/"

hpa:
  type: "scheme"
  name: "Human Protein Atlas at AlbaNova University"
  alias: 
  provider: 
  provider_id: "MIR:00100431"
  sort_score: "1"
  primary: "false"
  forward: "http://www.proteinatlas.org/${ac}"
  redirect: "http://www.proteinatlas.org/$id"
  description: "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers."
  subject: "image library; protein; schema.org; disease"
  location: "Sweden"
  synonym: "Human Protein Atlas"
  institution: "Department of Proteomics, School of Biotechnology, AlbaNova University Center, Stockholm"
  prefixed: "false"
  test: "ENSG00000026508"
  probe: "http://www.proteinatlas.org/ENSG00000026508"
  pattern: "^ENSG\\d{11}$"
  state: "100:Up"
  more: "http://www.proteinatlas.org/"

jaxmice:
  type: "scheme"
  name: "JAX Mice at Jackson Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100432"
  sort_score: "4"
  primary: "false"
  forward: "http://jaxmice.jax.org/strain/${ac}.html"
  redirect: "http://jaxmice.jax.org/strain/$id.html"
  description: "JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory."
  subject: "strain; mammalian; schema.org"
  location: "USA"
  synonym: "Human Protein Atlas"
  institution: "The Jackson Laboratory, Sacremento, California"
  prefixed: "false"
  test: "005012"
  probe: "http://jaxmice.jax.org/strain/005012.html"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://jaxmice.jax.org/"

ubio.namebank:
  type: "scheme"
  name: "uBio NameBank at The Marine Biological Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100433"
  sort_score: "4"
  primary: "false"
  forward: "http://www.ubio.org/browser/details.php?namebankID=${ac}"
  redirect: "http://www.ubio.org/browser/details.php?namebankID=$id"
  description: "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context."
  subject: "taxonomy; controlled vocabulary"
  location: "USA"
  synonym: "Universal Biological Indexer and Organizer (NameBank)"
  institution: "Marine Biological Laboratory, Woods Hole, Massachusetts"
  prefixed: "false"
  test: "2555646"
  probe: "http://www.ubio.org/browser/details.php?namebankID=2555646"
  pattern: "^\\d+$"
  state: "87:Up"
  more: "http://www.ubio.org"

yetfasco:
  type: "scheme"
  name: "YeTFasCo at University of Toronto"
  alias: 
  provider: 
  provider_id: "MIR:00100434"
  sort_score: "1"
  primary: "false"
  forward: "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=${ac}"
  redirect: "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$id"
  description: "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats."
  subject: "interaction; eukaryotic; gene"
  location: "Canada"
  synonym: "Yeast Transcription Factor Specificity Compendium"
  institution: "Department of Molecular Genetics, Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto"
  prefixed: "false"
  test: "YOR172W_571.0"
  probe: "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=YOR172W_571.0"
  pattern: "^\\w+\\_\\d+(\\.\\d+)?$"
  state: "100:Up"
  more: "http://yetfasco.ccbr.utoronto.ca/"

tarbase:
  type: "scheme"
  name: "TarBase v7 at University of Thessaly"
  alias: 
  provider: 
  provider_id: "MIR:00100713"
  sort_score: "1"
  primary: "false"
  forward: "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=${ac}"
  redirect: "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$id"
  description: "TarBase stores microRNA (miRNA) information for miRNA&#x2013;gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used."
  subject: "gene; nucleotide; interaction"
  location: "Greece"
  synonym: "Yeast Transcription Factor Specificity Compendium"
  institution: "DIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly"
  prefixed: "false"
  test: "hsa-let-7a-2-3p"
  probe: "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=hsa-let-7a-2-3p"
  pattern: "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)?"
  state: "100:Up"
  more: "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index"

charprot:
  type: "scheme"
  name: "CharProt at JCVI"
  alias: 
  provider: 
  provider_id: "MIR:00100436"
  sort_score: "4"
  primary: "false"
  forward: "http://www.jcvi.org/charprotdb/index.cgi/view/${ac}"
  redirect: "http://www.jcvi.org/charprotdb/index.cgi/view/$id"
  description: "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession."
  subject: "controlled vocabulary; gene; annotation"
  location: "USA"
  synonym: "Yeast Transcription Factor Specificity Compendium"
  institution: "J Craig Venter institute, Rockville, Maryland"
  prefixed: "false"
  test: "CH_001923"
  probe: "http://www.jcvi.org/charprotdb/index.cgi/view/CH_001923"
  pattern: "^CH_\\d+$"
  state: "65:Down"
  more: "http://www.jcvi.org/charprotdb"

oma.protein:
  type: "scheme"
  name: "OMA Protein through OMA browser at ETH Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100437"
  sort_score: "1"
  primary: "false"
  forward: "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=${ac}"
  redirect: "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$id"
  description: "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records."
  subject: "protein; clustering"
  location: "Switzerland"
  synonym: "Orthologous MAtrix"
  institution: "ETH Zurich, Computer Science, Zurich"
  prefixed: "false"
  test: "HUMAN16963"
  probe: "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=HUMAN16963"
  pattern: "^[A-Z0-9]{5}\\d+$"
  state: "65:Unknown"
  more: "https://omabrowser.org/cgi-bin/gateway.pl"

oma.grp:
  type: "scheme"
  name: "OMA Group through OMA browser at ETH Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100438"
  sort_score: "1"
  primary: "false"
  forward: "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=${ac}"
  redirect: "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$id"
  description: "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs."
  subject: "protein; clustering"
  location: "Switzerland"
  synonym: "Orthologous MAtrix"
  institution: "ETH Zurich, Computer Science, Zurich"
  prefixed: "false"
  test: "LCSCCPN"
  probe: "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=LCSCCPN"
  pattern: "^[A-Z]+$"
  state: "83:Unknown"
  more: "https://omabrowser.org/cgi-bin/gateway.pl"

ncbiprotein:
  type: "scheme"
  name: "NCBI Protein at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100439"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/protein/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/protein/$id"
  description: "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB."
  subject: "protein; sequence"
  location: "USA"
  synonym: "Orthologous MAtrix"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "CAA71118.1"
  probe: "https://www.ncbi.nlm.nih.gov/protein/CAA71118.1"
  pattern: "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/protein"

ncbi/ncbiprotein:
  type: "synonym"
  for: "ncbiprotein"

genpept:
  type: "scheme"
  name: "GenPept at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100440"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/protein/${ac}?report=genpept"
  redirect: "https://www.ncbi.nlm.nih.gov/protein/$id?report=genpept"
  description: "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank."
  subject: "genome; sequence; protein"
  location: "USA"
  synonym: "protein genbank identifier"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "CAA71118.1"
  probe: "https://www.ncbi.nlm.nih.gov/protein/CAA71118.1?report=genpept"
  pattern: "^\\w{3}\\d{5}(\\.\\d+)?$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/protein"

ncbi/genpept:
  type: "synonym"
  for: "genpept"

unigene:
  type: "scheme"
  name: "UniGene at NCBI"
  alias: 
  provider: 
  provider_id: "MIR:00100441"
  sort_score: "4"
  primary: "false"
  forward: "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=${ac}"
  redirect: "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$id"
  description: "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location."
  subject: 
  location: "USA"
  synonym: "protein genbank identifier"
  institution: "National Center for Biotechnology , Maryland"
  prefixed: "false"
  test: "4900"
  probe: "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=4900"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://www.ncbi.nlm.nih.gov/unigene"

bitterdb.rec:
  type: "scheme"
  name: "BitterDB Receptor at The Hebrew University of Jerusalem"
  alias: 
  provider: 
  provider_id: "MIR:00100442"
  sort_score: "1"
  primary: "false"
  forward: "http://bitterdb.agri.huji.ac.il/Receptor.php?id=${ac}"
  redirect: "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$id"
  description: "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors."
  subject: "human; chemical; protein"
  location: "Israel"
  synonym: "protein genbank identifier"
  institution: "The Robert H Smith Faculty of Agriculture, Food and Environment, The Institute of Biochemistry, Food Science and Nutrition, The Hebrew University of Jerusalem, Rehovot"
  prefixed: "false"
  test: "1"
  probe: "http://bitterdb.agri.huji.ac.il/Receptor.php?id=1"
  pattern: "^\\d+$"
  state: "91:Up"
  more: "http://bitterdb.agri.huji.ac.il/dbbitter.php"

bitterdb.cpd:
  type: "scheme"
  name: "BitterDB Compound at The Hebrew University of Jerusalem"
  alias: 
  provider: 
  provider_id: "MIR:00100443"
  sort_score: "1"
  primary: "false"
  forward: "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=${ac}"
  redirect: "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$id"
  description: "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds."
  subject: "chemical; human"
  location: "Israel"
  synonym: "protein genbank identifier"
  institution: "The Robert H Smith Faculty of Agriculture, Food and Environment, The Institute of Biochemistry, Food Science and Nutrition, The Hebrew University of Jerusalem, Rehovot"
  prefixed: "false"
  test: "46"
  probe: "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=46"
  pattern: "^\\d+$"
  state: "92:Up"
  more: "http://bitterdb.agri.huji.ac.il/dbbitter.php"

bioproject:
  type: "scheme"
  name: "BioProject at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100445"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/bioproject?term=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/bioproject?term=$id"
  description: "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project&#x2019;s scope, material, objectives, funding source and general relevance categories."
  subject: "annotation"
  location: "USA"
  synonym: "protein genbank identifier"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "PRJDB3"
  probe: "https://www.ncbi.nlm.nih.gov/bioproject?term=PRJDB3"
  pattern: "^PRJ[DEN][A-Z]\\d+$"
  state: "100:Up"
  more: "https://www.ncbi.nlm.nih.gov/bioproject"

ncbi/bioproject:
  type: "synonym"
  for: "bioproject"

ebi/bioproject:
  type: "scheme"
  name: "BioProject at European Nucleotide Archive (ENA)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100446"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ena/data/view/${ac}"
  redirect: "https://www.ebi.ac.uk/ena/data/view/$id"
  description: "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project&#x2019;s scope, material, objectives, funding source and general relevance categories."
  subject: "annotation"
  location: "UK"
  synonym: "protein genbank identifier"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "PRJDB3"
  probe: "https://www.ebi.ac.uk/ena/data/view/PRJDB3"
  pattern: "^PRJ[DEN][A-Z]\\d+$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/ena/"

z049/bioproject:
  type: "scheme"
  name: "BioProject at DNA Data Bank of Japan"
  alias: 
  provider: "z049"
  provider_id: "MIR:00100444"
  sort_score: "1"
  primary: "false"
  forward: "http://trace.ddbj.nig.ac.jp/BPSearch/bioproject?acc=${ac}"
  redirect: "http://trace.ddbj.nig.ac.jp/BPSearch/bioproject?acc=$id"
  description: "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project&#x2019;s scope, material, objectives, funding source and general relevance categories."
  subject: "annotation"
  location: "Japan"
  synonym: "protein genbank identifier"
  institution: "DNA Data Bank of Japan, Shizuoka"
  prefixed: "false"
  test: "PRJDB3"
  probe: "http://trace.ddbj.nig.ac.jp/BPSearch/bioproject?acc=PRJDB3"
  pattern: "^PRJ[DEN][A-Z]\\d+$"
  state: "95:Up"
  more: "http://trace.ddbj.nig.ac.jp/bioproject/"

biosample:
  type: "scheme"
  name: "BioSamples Database at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100447"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/biosamples/sample/${ac}"
  redirect: "https://www.ebi.ac.uk/biosamples/sample/$id"
  description: "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation."
  subject: "annotation"
  location: "UK"
  synonym: "BioSDe; BioSdn"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "SAMEA2397676"
  probe: "https://www.ebi.ac.uk/biosamples/sample/SAMEA2397676"
  pattern: "^SAM[NED](\\w)?\\d+$"
  state: "98:Probably up"
  more: "https://www.ebi.ac.uk/biosamples/"

ebi/biosample:
  type: "synonym"
  for: "biosample"

ncbi/biosample:
  type: "scheme"
  name: "BioSample at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100706"
  sort_score: "5"
  primary: "false"
  forward: "http://www.ncbi.nlm.nih.gov/biosample?term=${ac}"
  redirect: "http://www.ncbi.nlm.nih.gov/biosample?term=$id"
  description: "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation."
  subject: "annotation"
  location: "USA"
  synonym: "BioSDe; BioSdn"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "SAMN00000002"
  probe: "http://www.ncbi.nlm.nih.gov/biosample?term=SAMN00000002"
  pattern: "^SAM[NED](\\w)?\\d+$"
  state: "100:Up"
  more: "http://www.ncbi.nlm.nih.gov/biosample"

z050/biosample:
  type: "scheme"
  name: "BioSample at DNA Data Bank of Japan"
  alias: 
  provider: "z050"
  provider_id: "MIR:00100707"
  sort_score: "1"
  primary: "false"
  forward: "http://trace.ddbj.nig.ac.jp/BSSearch/biosample?acc=${ac}"
  redirect: "http://trace.ddbj.nig.ac.jp/BSSearch/biosample?acc=$id"
  description: "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation."
  subject: "annotation"
  location: "Japan"
  synonym: "BioSDe; BioSdn"
  institution: "Institution DNA Data Bank of Japan, Shizuoka"
  prefixed: "false"
  test: "SAMD00005257"
  probe: "http://trace.ddbj.nig.ac.jp/BSSearch/biosample?acc=SAMD00005257"
  pattern: "^SAM[NED](\\w)?\\d+$"
  state: "94:Up"
  more: "http://trace.ddbj.nig.ac.jp/biosample/"

piroplasma:
  type: "scheme"
  name: "PiroplasmaBD at EuPathDB"
  alias: 
  provider: 
  provider_id: "MIR:00100448"
  sort_score: "4"
  primary: "false"
  forward: "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=${ac}"
  redirect: "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
  description: "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."
  subject: "genome; eukaryotic"
  location: "USA"
  synonym: "BioSDe; BioSdn"
  institution: "Center for Tropical &amp; Emerging Global Diseases, University of Georgia, Georgia"
  prefixed: "false"
  test: "TA14985"
  probe: "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TA14985"
  pattern: "^TA\\d+$"
  state: "59:Down"
  more: "http://piroplasmadb.org/"

unite:
  type: "scheme"
  name: "Unite at University of Tartu"
  alias: 
  provider: 
  provider_id: "MIR:00100449"
  sort_score: "1"
  primary: "false"
  forward: "http://unite.ut.ee/bl_forw.php?nimi=${ac}"
  redirect: "http://unite.ut.ee/bl_forw.php?nimi=$id"
  description: "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa."
  subject: "nucleotide; sequence"
  location: "Estonia"
  synonym: "BioSDe; BioSdn"
  institution: "Institute of Botany, University of Tartu, Tartu"
  prefixed: "false"
  test: "UDB000691"
  probe: "http://unite.ut.ee/bl_forw.php?nimi=UDB000691"
  pattern: "^UDB\\d{6}$"
  state: "95:Up"
  more: "http://unite.ut.ee/"

ncim:
  type: "scheme"
  name: "NCIm at National Cancer Institue"
  alias: 
  provider: 
  provider_id: "MIR:00100450"
  sort_score: "4"
  primary: "false"
  forward: "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=${ac}"
  redirect: "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$id"
  description: "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical."
  subject: "ontology; controlled vocabulary"
  location: "USA"
  synonym: "NCI metathesaurus; National Cancer Institute Metathesaurus"
  institution: "National Cancer Institute, Center for Bioinformatics, Maryland"
  prefixed: "false"
  test: "C0026339"
  probe: "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C0026339"
  pattern: "^C\\d+$"
  state: "41:Down"
  more: "http://ncim.nci.nih.gov/"

proglyc:
  type: "scheme"
  name: "ProGlycProt at IMT"
  alias: 
  provider: 
  provider_id: "MIR:00100451"
  sort_score: "1"
  primary: "false"
  forward: "http://www.proglycprot.org/detail.aspx?ProId=${ac}"
  redirect: "http://www.proglycprot.org/detail.aspx?ProId=$id"
  description: "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information."
  subject: "sequence; protein"
  location: "India"
  synonym: "NCI metathesaurus; National Cancer Institute Metathesaurus"
  institution: "Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR),  Chandigarh"
  prefixed: "false"
  test: "AC119"
  probe: "http://www.proglycprot.org/detail.aspx?ProId=AC119"
  pattern: "^[A-Z]C\\d{1,3}$"
  state: "87:Down"
  more: "http://www.proglycprot.org/"

polbase:
  type: "scheme"
  name: "PolBase at New England BioLabs"
  alias: 
  provider: 
  provider_id: "MIR:00100452"
  sort_score: "4"
  primary: "false"
  forward: "https://polbase.neb.com/polymerases/${ac}#sequences"
  redirect: "https://polbase.neb.com/polymerases/$id#sequences"
  description: "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity."
  subject: "DNA; enzyme"
  location: "USA"
  synonym: "NCI metathesaurus; National Cancer Institute Metathesaurus"
  institution: "New England Biolabs, Ipswich, Massachusetts"
  prefixed: "false"
  test: "19-T4"
  probe: "https://polbase.neb.com/polymerases/19-T4#sequences"
  pattern: "^[A-Za-z-0-9]+$"
  state: "82:Up"
  more: "http://polbase.neb.com/"

nuclearbd:
  type: "scheme"
  name: "NucleaRDB at Radboud University Nijmegen Medical Centre"
  alias: 
  provider: 
  provider_id: "MIR:00100453"
  sort_score: "1"
  primary: "false"
  forward: "http://www.receptors.org/nucleardb/proteins/${ac}"
  redirect: "http://www.receptors.org/nucleardb/proteins/$id"
  description: "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs."
  subject: "interaction; sequence; protein"
  location: "Holland"
  synonym: "NCI metathesaurus; National Cancer Institute Metathesaurus"
  institution: "CMBI, Radboud University Nijmegen Medical Centre,  Dreijenplein, Wageningen"
  prefixed: "false"
  test: "prgr_human"
  probe: "http://www.receptors.org/nucleardb/proteins/prgr_human"
  pattern: "^\\w+\\_\\w+$"
  state: "49:Down"
  more: "http://www.receptors.org/nucleardb/"

supfam:
  type: "scheme"
  name: "SUPFAM at MRC and University of Bristol"
  alias: 
  provider: 
  provider_id: "MIR:00100454"
  sort_score: "2"
  primary: "false"
  forward: "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=${ac}"
  redirect: "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$id"
  description: "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt."
  subject: "structure; protein"
  location: "UK"
  synonym: "SUPERFAMILY"
  institution: "MRC Laboratory of Molecular Biology, Cambridge"
  prefixed: "false"
  test: "SSF57615"
  probe: "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF57615"
  pattern: "^\\w+$"
  state: "98:Up"
  more: "http://supfam.org/SUPERFAMILY/"

ricegap:
  type: "scheme"
  name: "Rice Genome Annotation Project at TIGR"
  alias: 
  provider: 
  provider_id: "MIR:00100455"
  sort_score: "4"
  primary: "false"
  forward: "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=${ac}"
  redirect: "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$id"
  description: "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines."
  subject: "sequence; genome"
  location: "USA"
  synonym: "SUPERFAMILY"
  institution: "The Institute for Genomic Research, Rockville, Maryland"
  prefixed: "false"
  test: "LOC_Os02g13300"
  probe: "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=LOC_Os02g13300"
  pattern: "^LOC\\_Os\\d{1,2}g\\d{5}$"
  state: "100:Up"
  more: "http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml"

pina:
  type: "scheme"
  name: "Protein Interaction Network Analysis (PINA) at Garvan Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100456"
  sort_score: "1"
  primary: "false"
  forward: "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac=${ac}&showExtend=null"
  redirect: "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac=$id&showExtend=null"
  description: "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms."
  subject: "protein; interaction"
  location: "Australia"
  synonym: "Protein Interaction Network Analysis"
  institution: "Garvan Institute of Medical Research, Sydney"
  prefixed: "false"
  test: "Q13485"
  probe: "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac=Q13485&showExtend=null"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"
  state: "55:Down"
  more: "http://cbg.garvan.unsw.edu.au/pina/"

tissuelist:
  type: "scheme"
  name: "Tissue List at Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100457"
  sort_score: "1"
  primary: "false"
  forward: "https://www.uniprot.org/tissues/${ac}"
  redirect: "https://www.uniprot.org/tissues/$id"
  description: "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified."
  subject: "controlled vocabulary"
  location: "Switzerland"
  synonym: "Protein Interaction Network Analysis"
  institution: "Swiss Institute of Bioinformatics (SIB), Geneva"
  prefixed: "false"
  test: "TS-0285"
  probe: "https://www.uniprot.org/tissues/TS-0285"
  pattern: "^TS-\\d{4}$"
  state: "98:Up"
  more: "https://www.uniprot.org/docs/tisslist.txt"

bacmap.biog:
  type: "scheme"
  name: "BacMap Biography at University of Alberta"
  alias: 
  provider: 
  provider_id: "MIR:00100459"
  sort_score: "1"
  primary: "false"
  forward: "http://bacmap.wishartlab.com/organisms/${ac}"
  redirect: "http://bacmap.wishartlab.com/organisms/$id"
  description: "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information."
  subject: "microbial; genome"
  location: "Canada"
  synonym: "Protein Interaction Network Analysis"
  institution: "Department of Computing Science, Food and Nutritional Science, University of Alberta, Edmonton"
  prefixed: "false"
  test: "1050"
  probe: "http://bacmap.wishartlab.com/organisms/1050"
  pattern: "^\\d+$"
  state: "97:Up"
  more: "http://bacmap.wishartlab.com/"

hgnc.symbol:
  type: "scheme"
  name: "HGNC Symbol at HUGO Genome Nomenclature Committee"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100460"
  sort_score: "2"
  primary: "false"
  forward: "https://www.genenames.org/cgi-bin/gene_symbol_report?match=${ac}"
  redirect: "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$id"
  description: "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol."
  subject: "human; gene; schema.org"
  location: "UK"
  synonym: "HUGO Gene Nomenclature Committee Symbol"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "DAPK1"
  probe: "https://www.genenames.org/cgi-bin/gene_symbol_report?match=DAPK1"
  pattern: "^[A-Za-z-0-9_]+(\\@)?$"
  state: "86:Down"
  more: "https://www.genenames.org/"

ebi/hgnc.symbol:
  type: "synonym"
  for: "hgnc.symbol"

panther.pathway:
  type: "scheme"
  name: "PANTHER Pathway at USC (Los Angeles)"
  alias: 
  provider: 
  provider_id: "MIR:00100461"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=${ac}"
  redirect: "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$id"
  description: "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components."
  subject: 
  location: "USA"
  synonym: "HUGO Gene Nomenclature Committee Symbol"
  institution: "Keck School of Medicine, University of Southern California"
  prefixed: "false"
  test: "P00024"
  probe: "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=P00024"
  pattern: "^P\\d{5}$"
  state: "99:Probably up"
  more: "http://www.pantherdb.org/"

fairsharing:
  type: "scheme"
  name: "FAIRSharing at University of Oxford"
  alias: 
  provider: 
  provider_id: "MIR:00100463"
  sort_score: "6"
  primary: "true"
  forward: "https://fairsharing.org/${ac}"
  redirect: "https://fairsharing.org/$id"
  description: "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies."
  subject: "registry; schema.org"
  location: "UK"
  synonym: "HUGO Gene Nomenclature Committee Symbol"
  institution: "Oxford e-Research Centre, University of Oxford, Oxford"
  prefixed: "false"
  test: "bsg-000052"
  probe: "https://fairsharing.org/bsg-000052"
  pattern: "^bsg-[dscp]?\\d{6}$"
  state: "92:Up"
  more: "https://fairsharing.org/"

fungidb:
  type: "scheme"
  name: "FungiDB at University of California"
  alias: 
  provider: 
  provider_id: "MIR:00100464"
  sort_score: "4"
  primary: "false"
  forward: "https://fungidb.org/fungidb/app/record/gene/${ac}"
  redirect: "https://fungidb.org/fungidb/app/record/gene/$id"
  description: "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina."
  subject: "genome; gene"
  location: "USA"
  synonym: "HUGO Gene Nomenclature Committee Symbol"
  institution: "Department of Plant Pathology & Microbiology, University of California, Riverside, California"
  prefixed: "false"
  test: "CNBG_0001"
  probe: "https://fungidb.org/fungidb/app/record/gene/CNBG_0001"
  pattern: "^[A-Za-z_0-9]+$"
  state: "63:Unknown"
  more: "https://fungidb.org/fungidb"

darc:
  type: "scheme"
  name: "DARC at University of Munich"
  alias: 
  provider: 
  provider_id: "MIR:00100465"
  sort_score: "1"
  primary: "false"
  forward: "http://darcsite.genzentrum.lmu.de/darc/view.php?id=${ac}"
  redirect: "http://darcsite.genzentrum.lmu.de/darc/view.php?id=$id"
  description: "DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors."
  subject: "structure; protein"
  location: "Germany"
  synonym: "Database of Aligned Ribosomal Complexes"
  institution: "Gene Center and Department for Biochemistry and Center for integrated Protein Science Munich, University of Munich, Munich"
  prefixed: "false"
  test: "1250"
  probe: "http://darcsite.genzentrum.lmu.de/darc/view.php?id=1250"
  pattern: "^\\d+$"
  state: "47:Down"
  more: "http://darcsite.genzentrum.lmu.de/darc/index.php"

drsc:
  type: "scheme"
  name: "DRSC at Harvard Medical School"
  alias: 
  provider: 
  provider_id: "MIR:00100466"
  sort_score: "4"
  primary: "false"
  forward: "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=${ac}"
  redirect: "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$id"
  description: "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides  information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene."
  subject: "eukaryotic; expression; gene"
  location: "USA"
  synonym: "Drosophila RNAi Screening Cente; FlyRNAi"
  institution: "Department of Genetics, Harvard Medical School, Boston, Massachusetts"
  prefixed: "false"
  test: "DRSC05221"
  probe: "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=DRSC05221"
  pattern: "^DRSC\\d+$"
  state: "80:Up"
  more: "http://flyrnai.org/"

oridb.schizo:
  type: "scheme"
  name: "OriDB Schizosaccharomyces at University of Nottingham"
  alias: 
  provider: 
  provider_id: "MIR:00100467"
  sort_score: "2"
  primary: "false"
  forward: "http://pombe.oridb.org/details.php?id=${ac}"
  redirect: "http://pombe.oridb.org/details.php?id=$id"
  description: "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe."
  subject: "eukaryotic; genome"
  location: "UK"
  synonym: "Drosophila RNAi Screening Cente; FlyRNAi"
  institution: "Centre for Genetics and Genomics, The University of Nottingham, Queen's Medical Centre, Nottingham"
  prefixed: "false"
  test: "1"
  probe: "http://pombe.oridb.org/details.php?id=1"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://pombe.oridb.org/index.php"

oridb.sacch:
  type: "scheme"
  name: "OriDB Saccharomyces at University of Nottingham"
  alias: 
  provider: 
  provider_id: "MIR:00100468"
  sort_score: "2"
  primary: "false"
  forward: "http://cerevisiae.oridb.org/details.php?id=${ac}"
  redirect: "http://cerevisiae.oridb.org/details.php?id=$id"
  description: "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae."
  subject: "genome; eukaryotic"
  location: "UK"
  synonym: "Drosophila RNAi Screening Cente; FlyRNAi"
  institution: "Centre for Genetics and Genomics, The University of Nottingham, Queen's Medical Centre, Nottingham"
  prefixed: "false"
  test: "1"
  probe: "http://cerevisiae.oridb.org/details.php?id=1"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://cerevisiae.oridb.org/index.php"

pscdb:
  type: "scheme"
  name: "PSCDB at Nagoya University"
  alias: 
  provider: 
  provider_id: "MIR:00100469"
  sort_score: "1"
  primary: "false"
  forward: "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/${ac}.html"
  redirect: "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$id.html"
  description: "The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion."
  subject: "protein; interaction; structure"
  location: "Japan"
  synonym: "Protein Structural Change DataBase"
  institution: "Graduate School of Information Science, Nagoya University, Furo-cho, Chikusa-ku"
  prefixed: "false"
  test: "051"
  probe: "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/051.html"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html"

scop:
  type: "scheme"
  name: "SCOP at Berkeley"
  alias: 
  provider: 
  provider_id: "MIR:00100471"
  sort_score: "4"
  primary: "false"
  forward: "http://scop.berkeley.edu/sunid=${ac}"
  redirect: "http://scop.berkeley.edu/sunid=$id"
  description: "The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes."
  subject: "protein; classification; structure"
  location: "USA"
  synonym: "Structural Classification of Proteins"
  institution: "University of California, Berkeley"
  prefixed: "false"
  test: "47419"
  probe: "http://scop.berkeley.edu/sunid=47419"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://scop.berkeley.edu/"

z051/scop:
  type: "scheme"
  name: "SCOP at MRC"
  alias: 
  provider: "z051"
  provider_id: "MIR:00100470"
  sort_score: "2"
  primary: "false"
  forward: "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sunid=${ac}"
  redirect: "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sunid=$id"
  description: "The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes."
  subject: "protein; classification; structure"
  location: "UK"
  synonym: "Structural Classification of Proteins"
  institution: "MRC Laboratory of Molecular Biology, Centre for Protein Engineering, Hills Road, Cambridge"
  prefixed: "false"
  test: "47419"
  probe: "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sunid=47419"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://scop.mrc-lmb.cam.ac.uk/scop/"

ena.embl:
  type: "scheme"
  name: "ENA through GenBank"
  alias: 
  provider: 
  provider_id: "MIR:00100889"
  sort_score: "4"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/nuccore/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/nuccore/$id"
  description: "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers."
  subject: "sequence; nucleotide"
  location: "USA"
  synonym: "European Nucleotide Archive; Embl-Bank"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "BN000065"
  probe: "https://www.ncbi.nlm.nih.gov/nuccore/BN000065"
  pattern: "^[A-Z]+[0-9]+(\\.\\d+)?$"
  state: "0:Unknown"
  more: "https://www.ncbi.nlm.nih.gov/Genbank/"

ebi/ena.embl:
  type: "scheme"
  name: "ENA at European Bioinformatics Institute"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100473"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ena/data/view/${ac}"
  redirect: "https://www.ebi.ac.uk/ena/data/view/$id"
  description: "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers."
  subject: "sequence; nucleotide"
  location: "UK"
  synonym: "European Nucleotide Archive; Embl-Bank"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "BN000065"
  probe: "https://www.ebi.ac.uk/ena/data/view/BN000065"
  pattern: "^[A-Z]+[0-9]+(\\.\\d+)?$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/ena/"

dommino:
  type: "scheme"
  name: "DOMMINO at University of Missouri"
  alias: 
  provider: 
  provider_id: "MIR:00100474"
  sort_score: "4"
  primary: "false"
  forward: "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/${ac}"
  redirect: "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$id"
  description: "DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides."
  subject: "protein; interaction"
  location: "USA"
  synonym: "Database of Macromolecular Interactions"
  institution: "Informatics Institute and Department of Computer Science and Bond Life Science Center, University of Missouri, Columbia"
  prefixed: "false"
  test: "2GC4"
  probe: "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/2GC4"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "94:Down"
  more: "http://dommino.org/"

panther.node:
  type: "scheme"
  name: "PANTHER Node at USC (Los Angeles)"
  alias: 
  provider: 
  provider_id: "MIR:00100475"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pantree.org/node/annotationNode.jsp?id=${ac}"
  redirect: "http://www.pantree.org/node/annotationNode.jsp?id=$id"
  description: "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent &#x2018;all&#x2019; of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes."
  subject: 
  location: "USA"
  synonym: "Database of Macromolecular Interactions"
  institution: "Keck School of Medicine, University of Southern California"
  prefixed: "false"
  test: "PTN000000026"
  probe: "http://www.pantree.org/node/annotationNode.jsp?id=PTN000000026"
  pattern: "^PTN\\d{9}$"
  state: "95:Probably up"
  more: "http://pantree.org/"

ccds:
  type: "scheme"
  name: "Consensus CDS at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100477"
  sort_score: "6"
  primary: "true"
  forward: "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=${ac}"
  redirect: "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$id"
  description: "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations."
  subject: "genome; sequence; protein; mammalian"
  location: "USA"
  synonym: "CCDS"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "CCDS13573.1"
  probe: "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=CCDS13573.1"
  pattern: "^CCDS\\d+\\.\\d+$"
  state: "94:Up"
  more: "http://www.ncbi.nlm.nih.gov/CCDS/"

ncbi/ccds:
  type: "synonym"
  for: "ccds"

lrg:
  type: "scheme"
  name: "Locus Reference Genomic through Ensembl mirror (US west)"
  alias: 
  provider: 
  provider_id: "MIR:00100630"
  sort_score: "4"
  primary: "false"
  forward: "http://uswest.ensembl.org/Homo_sapiens/LRG/Summary?lrg=${ac}"
  redirect: "http://uswest.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$id"
  description: "Locus Reference Genomic (LRG) provides identifiers to stable genomic DNA sequences for regions of the human genome, providing a recognized reference-sequence standard for reporting sequence variants. LRG is maintained by the NCBI and the European Bioinformatics Institute (EBI)."
  subject: "sequence; genome; DNA; schema.org; human"
  location: "USA"
  synonym: "LRG"
  institution: 
  prefixed: "false"
  test: "LRG_1"
  probe: "http://uswest.ensembl.org/Homo_sapiens/LRG/Summary?lrg=LRG_1"
  pattern: "^LRG_\\d+$"
  state: "95:Up"
  more: "http://uswest.ensembl.org/"

z052/lrg:
  type: "scheme"
  name: "Locus Reference Genomic through Ensembl mirror (US east)"
  alias: 
  provider: "z052"
  provider_id: "MIR:00100631"
  sort_score: "4"
  primary: "false"
  forward: "http://useast.ensembl.org/Homo_sapiens/LRG/Summary?lrg=${ac}"
  redirect: "http://useast.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$id"
  description: "Locus Reference Genomic (LRG) provides identifiers to stable genomic DNA sequences for regions of the human genome, providing a recognized reference-sequence standard for reporting sequence variants. LRG is maintained by the NCBI and the European Bioinformatics Institute (EBI)."
  subject: "sequence; genome; DNA; schema.org; human"
  location: "USA"
  synonym: "LRG"
  institution: 
  prefixed: "false"
  test: "LRG_1"
  probe: "http://useast.ensembl.org/Homo_sapiens/LRG/Summary?lrg=LRG_1"
  pattern: "^LRG_\\d+$"
  state: "95:Up"
  more: "http://useast.ensembl.org/"

z053/lrg:
  type: "scheme"
  name: "Locus Reference Genomic at University of Leicester"
  alias: 
  provider: "z053"
  provider_id: "MIR:00100478"
  sort_score: "2"
  primary: "false"
  forward: "ftp://ftp.ebi.ac.uk/pub/databases/lrgex/${ac}.xml"
  redirect: "ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$id.xml"
  description: "Locus Reference Genomic (LRG) provides identifiers to stable genomic DNA sequences for regions of the human genome, providing a recognized reference-sequence standard for reporting sequence variants. LRG is maintained by the NCBI and the European Bioinformatics Institute (EBI)."
  subject: "sequence; genome; DNA; schema.org; human"
  location: "UK"
  synonym: "LRG"
  institution: "Department of Genetics, University of Leicester, Leicester"
  prefixed: "false"
  test: "LRG_1"
  probe: "ftp://ftp.ebi.ac.uk/pub/databases/lrgex/LRG_1.xml"
  pattern: "^LRG_\\d+$"
  state: "100:Up"
  more: "http://www.lrg-sequence.org/"

z054/lrg:
  type: "scheme"
  name: "Locus Reference Genomic through Ensembl"
  alias: 
  provider: "z054"
  provider_id: "MIR:00100627"
  sort_score: "2"
  primary: "false"
  forward: "http://www.ensembl.org/Homo_sapiens/LRG/Summary?lrg=${ac}"
  redirect: "http://www.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$id"
  description: "Locus Reference Genomic (LRG) provides identifiers to stable genomic DNA sequences for regions of the human genome, providing a recognized reference-sequence standard for reporting sequence variants. LRG is maintained by the NCBI and the European Bioinformatics Institute (EBI)."
  subject: "sequence; genome; DNA; schema.org; human"
  location: "UK"
  synonym: "LRG"
  institution: "EnSembl, Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "LRG_1"
  probe: "http://www.ensembl.org/Homo_sapiens/LRG/Summary?lrg=LRG_1"
  pattern: "^LRG_\\d+$"
  state: "95:Up"
  more: "http://www.ensembl.org/"

z055/lrg:
  type: "scheme"
  name: "Locus Reference Genomic through Ensembl mirror (asia)"
  alias: 
  provider: "z055"
  provider_id: "MIR:00100629"
  sort_score: "1"
  primary: "false"
  forward: "http://asia.ensembl.org/Homo_sapiens/LRG/Summary?lrg=${ac}"
  redirect: "http://asia.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$id"
  description: "Locus Reference Genomic (LRG) provides identifiers to stable genomic DNA sequences for regions of the human genome, providing a recognized reference-sequence standard for reporting sequence variants. LRG is maintained by the NCBI and the European Bioinformatics Institute (EBI)."
  subject: "sequence; genome; DNA; schema.org; human"
  location: "Singapore"
  synonym: "LRG"
  institution: 
  prefixed: "false"
  test: "LRG_1"
  probe: "http://asia.ensembl.org/Homo_sapiens/LRG/Summary?lrg=LRG_1"
  pattern: "^LRG_\\d+$"
  state: "95:Up"
  more: "http://asia.ensembl.org/"

hprd:
  type: "scheme"
  name: "Human Protein Reference Database"
  alias: 
  provider: 
  provider_id: "MIR:00100479"
  sort_score: "1"
  primary: "false"
  forward: "http://www.hprd.org/protein/${ac}"
  redirect: "http://www.hprd.org/protein/$id"
  description: "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome."
  subject: "protein; human"
  location: "India"
  synonym: "Human Protein Reference Database"
  institution: "Institute of Bioinformatics, International Tech Park, Bangalore"
  prefixed: "false"
  test: "00001"
  probe: "http://www.hprd.org/protein/00001"
  pattern: "^\\d+$"
  state: "94:Up"
  more: "http://www.hprd.org/"

gxa.gene:
  type: "scheme"
  name: "GXA Gene at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100482"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/gxa/genes/${ac}"
  redirect: "https://www.ebi.ac.uk/gxa/genes/$id"
  description: "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes."
  subject: "microarray; expression; gene"
  location: "UK"
  synonym: "Gene Expression Atlas Gene"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "AT4G01080"
  probe: "https://www.ebi.ac.uk/gxa/genes/AT4G01080"
  pattern: "^\\w+$"
  state: "75:Down"
  more: "https://www.ebi.ac.uk/gxa/"

ebi/gxa.gene:
  type: "synonym"
  for: "gxa.gene"

gxa.expt:
  type: "scheme"
  name: "GXA Expt at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100483"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/gxa/experiments/${ac}"
  redirect: "https://www.ebi.ac.uk/gxa/experiments/$id"
  description: "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments."
  subject: "expression; microarray"
  location: "UK"
  synonym: "Gene Expression Atlas Experiment"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "E-MTAB-2037"
  probe: "https://www.ebi.ac.uk/gxa/experiments/E-MTAB-2037"
  pattern: "^[AEP]-\\w{4}-\\d+$"
  state: "82:Up"
  more: "https://www.ebi.ac.uk/gxa/"

ebi/gxa.expt:
  type: "synonym"
  for: "gxa.expt"

omicsdi/gxa.expt:
  type: "scheme"
  name: "GXA Expt through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100857"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/atlas-experiments/${ac}"
  redirect: "https://www.omicsdi.org/dataset/atlas-experiments/$id"
  description: "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments."
  subject: "expression; microarray"
  location: "UK"
  synonym: "Gene Expression Atlas Experiment"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "E-MTAB-2037"
  probe: "https://www.omicsdi.org/dataset/atlas-experiments/E-MTAB-2037"
  pattern: "^[AEP]-\\w{4}-\\d+$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

metabolights:
  type: "scheme"
  name: "MetaboLights at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100486"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/metabolights/${ac}"
  redirect: "https://www.ebi.ac.uk/metabolights/$id"
  description: "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies."
  subject: "metabolite"
  location: "UK"
  synonym: "Gene Expression Atlas Experiment"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "MTBLS1"
  probe: "https://www.ebi.ac.uk/metabolights/MTBLS1"
  pattern: "^MTBLS\\d+$"
  state: "98:Probably up"
  more: "https://www.ebi.ac.uk/metabolights/"

ebi/metabolights:
  type: "synonym"
  for: "metabolights"

omicsdi/metabolights:
  type: "scheme"
  name: "MataboLights through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100853"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/metabolights_dataset/${ac}"
  redirect: "https://www.omicsdi.org/dataset/metabolights_dataset/$id"
  description: "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies."
  subject: "metabolite"
  location: "UK"
  synonym: "Gene Expression Atlas Experiment"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "MTBLS1"
  probe: "https://www.omicsdi.org/dataset/metabolights_dataset/MTBLS1"
  pattern: "^MTBLS\\d+$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

orcid:
  type: "scheme"
  name: "ORCID at Bethesda"
  alias: 
  provider: 
  provider_id: "MIR:00100489"
  sort_score: "4"
  primary: "false"
  forward: "https://orcid.org/${ac}"
  redirect: "https://orcid.org/$id"
  description: "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities."
  subject: "bibliography"
  location: "USA"
  synonym: "Open Researcher and Contributor ID"
  institution: "ORCID Inc, Bethesda, Mayrland"
  prefixed: "false"
  test: "0000-0002-5355-2576"
  probe: "https://orcid.org/0000-0002-5355-2576"
  pattern: "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$"
  state: "85:Down"
  more: "https://orcid.org"

inchi:
  type: "scheme"
  name: "InChI through NIST"
  alias: 
  provider: 
  provider_id: "MIR:00100493"
  sort_score: "4"
  primary: "false"
  forward: "http://webbook.nist.gov/cgi/cbook.cgi?${ac}"
  redirect: "http://webbook.nist.gov/cgi/cbook.cgi?$id"
  description: "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier."
  subject: "chemical; structure"
  location: "USA"
  synonym: "IUPAC International Chemical Identifier"
  institution: "National Institute of Standards and Technology, Gaithersburg, Maryland"
  prefixed: "false"
  test: "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
  probe: "http://webbook.nist.gov/cgi/cbook.cgi?InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
  pattern: "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$"
  state: "77:Down"
  more: "http://webbook.nist.gov/chemistry"

ebi/inchi:
  type: "scheme"
  name: "InChI through ChEBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100494"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString=${ac}"
  redirect: "https://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString=$id"
  description: "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier."
  subject: "chemical; structure"
  location: "UK"
  synonym: "IUPAC International Chemical Identifier"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
  probe: "https://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString=InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
  pattern: "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$"
  state: "98:Up"
  more: "https://www.ebi.ac.uk/chebi/"

z056/inchi:
  type: "scheme"
  name: "InChI through Chemspider"
  alias: 
  provider: "z056"
  provider_id: "MIR:00100492"
  sort_score: "2"
  primary: "false"
  forward: "http://www.chemspider.com/${ac}"
  redirect: "http://www.chemspider.com/$id"
  description: "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier."
  subject: "chemical; structure"
  location: "UK"
  synonym: "IUPAC International Chemical Identifier"
  institution: "Royal Society of Chemistry, Cambridge"
  prefixed: "false"
  test: "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
  probe: "http://www.chemspider.com/InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
  pattern: "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$"
  state: "100:Up"
  more: "http://www.chemspider.com/"

z057/inchi:
  type: "scheme"
  name: "InChI through RDF Open Molecules"
  alias: 
  provider: "z057"
  provider_id: "MIR:00100491"
  sort_score: "1"
  primary: "false"
  forward: "http://rdf.openmolecules.net/?${ac}"
  redirect: "http://rdf.openmolecules.net/?$id"
  description: "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier."
  subject: "chemical; structure"
  location: "Netherlands"
  synonym: "IUPAC International Chemical Identifier"
  institution: "BiGCaT, Department of Bioinformatics, Maastricht"
  prefixed: "false"
  test: "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
  probe: "http://rdf.openmolecules.net/?InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
  pattern: "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$"
  state: "90:Up"
  more: "http://rdf.openmolecules.net/"

wikipedia.en:
  type: "scheme"
  name: "Wikipedia structured content through DBpedia"
  alias: 
  provider: 
  provider_id: "MIR:00100496"
  sort_score: "4"
  primary: "false"
  forward: "http://dbpedia.org/page/${ac}"
  redirect: "http://dbpedia.org/page/$id"
  description: "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay."
  subject: "encyclopedia"
  location: "USA"
  synonym: "IUPAC International Chemical Identifier"
  institution: "OpenLink Software, Burlington, Massachusetts"
  prefixed: "false"
  test: "SM_UB-81"
  probe: "http://dbpedia.org/page/SM_UB-81"
  pattern: "^[A-Za-z-0-9_]+$"
  state: "96:Up"
  more: "http://wiki.dbpedia.org/"

z058/wikipedia.en:
  type: "scheme"
  name: "Wikipedia (English)"
  alias: 
  provider: "z058"
  provider_id: "MIR:00100495"
  sort_score: "4"
  primary: "false"
  forward: "http://en.wikipedia.org/wiki/${ac}"
  redirect: "http://en.wikipedia.org/wiki/$id"
  description: "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay."
  subject: "encyclopedia"
  location: "USA"
  synonym: "IUPAC International Chemical Identifier"
  institution: "Wikimedia Foundation, San Francisco, California"
  prefixed: "false"
  test: "SM_UB-81"
  probe: "http://en.wikipedia.org/wiki/SM_UB-81"
  pattern: "^[A-Za-z-0-9_]+$"
  state: "92:Up"
  more: "http://en.wikipedia.org/wiki/Main_Page"

phosphopoint.kinase:
  type: "scheme"
  name: "PhosphoPoint Kinase at National Taiwan University"
  alias: 
  provider: 
  provider_id: "MIR:00100499"
  sort_score: "1"
  primary: "false"
  forward: "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=${ac}&drawing=0&sorting=0&kinome=1"
  redirect: "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$id&drawing=0&sorting=0&kinome=1"
  description: "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information."
  subject: "protein; human; interaction"
  location: "Republic of China"
  synonym: "IUPAC International Chemical Identifier"
  institution: "Department of Computer Science and Information Engineering, National Taiwan University"
  prefixed: "false"
  test: "AURKA"
  probe: "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=AURKA&drawing=0&sorting=0&kinome=1"
  pattern: "^\\w+$"
  state: "25:Down"
  more: "http://kinase.bioinformatics.tw/"

phosphopoint.protein:
  type: "scheme"
  name: "PhosphoPoint Phosphoprotein at National Taiwan University"
  alias: 
  provider: 
  provider_id: "MIR:00100500"
  sort_score: "1"
  primary: "false"
  forward: "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=${ac}&drawing=0&sorting=0&kinome=0"
  redirect: "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$id&drawing=0&sorting=0&kinome=0"
  description: "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information."
  subject: "human; protein; interaction"
  location: "Republic of China"
  synonym: "IUPAC International Chemical Identifier"
  institution: "Department of Computer Science and Information Engineering, National Taiwan University"
  prefixed: "false"
  test: "AURKA"
  probe: "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=AURKA&drawing=0&sorting=0&kinome=0"
  pattern: "^\\w+$"
  state: "25:Down"
  more: "http://kinase.bioinformatics.tw/"

inchikey:
  type: "scheme"
  name: "InChiKey resolver at NCI"
  alias: 
  provider: 
  provider_id: "MIR:00100505"
  sort_score: "4"
  primary: "false"
  forward: "http://cactus.nci.nih.gov/chemical/structure/${ac}/names"
  redirect: "http://cactus.nci.nih.gov/chemical/structure/$id/names"
  description: "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI."
  subject: "structure; chemical"
  location: "USA"
  synonym: "hashed InChI"
  institution: "National Cancer Institute, Rockville, Maryland"
  prefixed: "false"
  test: "RYYVLZVUVIJVGH-UHFFFAOYSA-N"
  probe: "http://cactus.nci.nih.gov/chemical/structure/RYYVLZVUVIJVGH-UHFFFAOYSA-N/names"
  pattern: "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])?"
  state: "82:Down"
  more: "http://cactus.nci.nih.gov/chemical/structure"

z059/inchikey:
  type: "scheme"
  name: "InChIKey through ChemSpider"
  alias: 
  provider: "z059"
  provider_id: "MIR:00100501"
  sort_score: "2"
  primary: "false"
  forward: "http://www.chemspider.com/inchikey=${ac}"
  redirect: "http://www.chemspider.com/inchikey=$id"
  description: "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI."
  subject: "structure; chemical"
  location: "UK"
  synonym: "hashed InChI"
  institution: "Royal Society of Chemistry, Cambridge"
  prefixed: "false"
  test: "RYYVLZVUVIJVGH-UHFFFAOYSA-N"
  probe: "http://www.chemspider.com/inchikey=RYYVLZVUVIJVGH-UHFFFAOYSA-N"
  pattern: "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])?"
  state: "89:Up"
  more: "http://www.chemspider.com/"

uniprot.isoform:
  type: "scheme"
  name: "UniProt Isoform through UniParc"
  alias: 
  provider: 
  provider_id: "MIR:00100504"
  sort_score: "4"
  primary: "false"
  forward: "http://www.uniprot.org/uniparc/?query=${ac}"
  redirect: "http://www.uniprot.org/uniparc/?query=$id"
  description: "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information."
  subject: "sequence; protein"
  location: "USA, UK and Switzerland"
  synonym: "UniProtKB Isoform"
  institution: "UniProt Consortium"
  prefixed: "false"
  test: "Q5BJF6-3"
  probe: "http://www.uniprot.org/uniparc/?query=Q5BJF6-3"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$"
  state: "97:Up"
  more: "http://www.uniprot.org/uniparc/"

z060/uniprot.isoform:
  type: "scheme"
  name: "UniProt Isoform through Universal Protein Resource"
  alias: 
  provider: "z060"
  provider_id: "MIR:00100502"
  sort_score: "4"
  primary: "false"
  forward: "http://www.uniprot.org/uniprot/${ac}"
  redirect: "http://www.uniprot.org/uniprot/$id"
  description: "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information."
  subject: "sequence; protein"
  location: "USA, UK and Switzerland"
  synonym: "UniProtKB Isoform"
  institution: "UniProt Consortium"
  prefixed: "false"
  test: "Q5BJF6-3"
  probe: "http://www.uniprot.org/uniprot/Q5BJF6-3"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$"
  state: "97:Up"
  more: "http://www.uniprot.org/"

z061/uniprot.isoform:
  type: "scheme"
  name: "UniProt Isoform through Universal Protein Resource using Persistent URL system"
  alias: 
  provider: "z061"
  provider_id: "MIR:00100503"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.uniprot.org/uniprot/${ac}"
  redirect: "http://purl.uniprot.org/uniprot/$id"
  description: "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information."
  subject: "sequence; protein"
  location: "USA, UK and Switzerland"
  synonym: "UniProtKB Isoform"
  institution: "UniProt Consortium"
  prefixed: "false"
  test: "Q5BJF6-3"
  probe: "http://purl.uniprot.org/uniprot/Q5BJF6-3"
  pattern: "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$"
  state: "97:Up"
  more: "http://purl.uniprot.org/"

kegg.environ:
  type: "scheme"
  name: "KEGG ENVIRON Database"
  alias: 
  provider: 
  provider_id: "MIR:00100506"
  sort_score: "6"
  primary: "true"
  forward: "http://www.kegg.jp/entry/${ac}"
  redirect: "http://www.kegg.jp/entry/$id"
  description: "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable."
  subject: "drug; chemical"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "ev:E00032"
  probe: "http://www.kegg.jp/entry/ev:E00032"
  pattern: "^(ev\\:)?E\\d+$"
  state: "100:Up"
  more: "http://www.genome.jp/kegg/drug/environ.html"

cldb:
  type: "scheme"
  name: "CLDB at Genova"
  alias: 
  provider: 
  provider_id: "MIR:00100508"
  sort_score: "1"
  primary: "false"
  forward: "http://bioinformatics.hsanmartino.it/hypercldb/${ac}.html"
  redirect: "http://bioinformatics.hsanmartino.it/hypercldb/$id.html"
  description: "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through  distributors, allowing cell line requests to be made from collections and laboratories."
  subject: "mammalian; strain; catalogue"
  location: "Italy"
  synonym: "Cell Line Data Base"
  institution: "Bioinformatics, Cell Bank, National Cancer Research Institute, Genova"
  prefixed: "false"
  test: "cl3603"
  probe: "http://bioinformatics.hsanmartino.it/hypercldb/cl3603.html"
  pattern: "^(cl|tum)\\d+$"
  state: "89:Up"
  more: "http://bioinformatics.hsanmartino.it/hypercldb/indexes.html"

efo:
  type: "scheme"
  name: "EFO through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100510"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/EFO/efo:EFO_${ac}"
  redirect: "http://purl.bioontology.org/ontology/EFO/efo:EFO_$id"
  description: "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team."
  subject: "ontology"
  location: "USA"
  synonym: "EFO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "0004859"
  probe: "http://purl.bioontology.org/ontology/EFO/efo:EFO_0004859"
  pattern: "^\\d{7}$"
  state: "96:Up"
  more: "http://bioportal.bioontology.org/ontologies/EFO"

bptl/efo:
  type: "synonym"
  for: "efo"

ebi/efo:
  type: "scheme"
  name: "EFO through Functional Genomics Group (EBI)"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100511"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/efo/EFO_${ac}"
  redirect: "https://www.ebi.ac.uk/efo/EFO_$id"
  description: "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team."
  subject: "ontology"
  location: "UK"
  synonym: "EFO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "0004859"
  probe: "https://www.ebi.ac.uk/efo/EFO_0004859"
  pattern: "^\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/efo/"

ols/efo:
  type: "scheme"
  name: "EFO through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100509"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/efo/terms?obo_id=EFO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/efo/terms?obo_id=EFO:$id"
  description: "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team."
  subject: "ontology"
  location: "UK"
  synonym: "EFO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "0004859"
  probe: "https://www.ebi.ac.uk/ols/ontologies/efo/terms?obo_id=EFO:0004859"
  pattern: "^\\d{7}$"
  state: "97:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/efo"

hgmd:
  type: "scheme"
  name: "HGMD at Cardiff University"
  alias: 
  provider: 
  provider_id: "MIR:00100512"
  sort_score: "1"
  primary: "false"
  forward: "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=${ac}"
  redirect: "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$id"
  description: "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases."
  subject: "disease; human; gene"
  location: "Wales"
  synonym: "Human Gene Mutation Database"
  institution: "Cardiff University, Cardiff"
  prefixed: "false"
  test: "CALM1"
  probe: "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=CALM1"
  pattern: "^[A-Z_0-9]+$"
  state: "0:Unknown"
  more: "http://www.hgmd.cf.ac.uk/ac/index.php"

aphidbase.transcript:
  type: "scheme"
  name: "AphidBase at INRA"
  alias: 
  provider: 
  provider_id: "MIR:00100513"
  sort_score: "1"
  primary: "false"
  forward: "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=${ac}"
  redirect: "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$id"
  description: "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information."
  subject: "genome; sequence"
  location: "France"
  synonym: "Human Gene Mutation Database"
  institution: "INRA UMR, Le Rheu"
  prefixed: "false"
  test: "ACYPI000159"
  probe: "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=ACYPI000159"
  pattern: "^ACYPI\\d{6}(-RA)?$"
  state: "98:Up"
  more: "http://www.aphidbase.com/aphidbase"

affy.probeset:
  type: "scheme"
  name: "Affymetrix ProbeSet in Santa Clara"
  alias: 
  provider: 
  provider_id: "MIR:00100514"
  sort_score: "6"
  primary: "true"
  forward: "https://www.affymetrix.com/LinkServlet?probeset=${ac}"
  redirect: "https://www.affymetrix.com/LinkServlet?probeset=$id"
  description: "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration."
  subject: "genome; nucleotide"
  location: "USA"
  synonym: "Human Gene Mutation Database"
  institution: "Affymetrix, Santa Clara, California"
  prefixed: "false"
  test: "243002_at"
  probe: "https://www.affymetrix.com/LinkServlet?probeset=243002_at"
  pattern: "\\d{4,}((_[asx])?_at)?"
  state: "0:Unknown"
  more: "http://www.affymetrix.com/"

z062/affy.probeset:
  type: "scheme"
  name: "Bio2RDF"
  alias: 
  provider: "z062"
  provider_id: "MIR:00100672"
  sort_score: "1"
  primary: "false"
  forward: "http://cu.affymetrix.bio2rdf.org/describe/?url=http://bio2rdf.org/affymetrix:${ac}"
  redirect: "http://cu.affymetrix.bio2rdf.org/describe/?url=http://bio2rdf.org/affymetrix:$id"
  description: "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration."
  subject: "genome; nucleotide"
  location: 
  synonym: "Human Gene Mutation Database"
  institution: "Bio2RDF.org"
  prefixed: "false"
  test: "243002_at"
  probe: "http://cu.affymetrix.bio2rdf.org/describe/?url=http://bio2rdf.org/affymetrix:243002_at"
  pattern: "\\d{4,}((_[asx])?_at)?"
  state: "0:Unknown"
  more: "http://cu.affymetrix.bio2rdf.org/fct/"

treefam:
  type: "scheme"
  name: "TreeFam database"
  alias: 
  provider: 
  provider_id: "MIR:00100515"
  sort_score: "1"
  primary: "false"
  forward: "http://www.treefam.org/family/${ac}"
  redirect: "http://www.treefam.org/family/$id"
  description: "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments."
  subject: 
  location: "China"
  synonym: "Human Gene Mutation Database"
  institution: "Beijing Genomics Institute, Beijing"
  prefixed: "false"
  test: "TF101014"
  probe: "http://www.treefam.org/family/TF101014"
  pattern: "^\\w{1,2}\\d+$"
  state: "99:Up"
  more: "http://www.treefam.org/"

caps:
  type: "scheme"
  name: "CAPS-DB at Leeds Institute of Molecular Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100516"
  sort_score: "2"
  primary: "false"
  forward: "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=${ac}"
  redirect: "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$id"
  description: "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps."
  subject: "protein; structure; domain"
  location: "UK"
  synonym: "Human Gene Mutation Database"
  institution: "Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, Leeds"
  prefixed: "false"
  test: "434"
  probe: "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=434"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home"

cubedb:
  type: "scheme"
  name: "Cube db at Bioinformatics Institute (Singapore)"
  alias: 
  provider: 
  provider_id: "MIR:00100517"
  sort_score: "1"
  primary: "false"
  forward: "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/${ac}/"
  redirect: "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$id/"
  description: "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available."
  subject: "protein; domain; human"
  location: "China"
  synonym: "Human Gene Mutation Database"
  institution: "Bioinformatics Institute, Singapore"
  prefixed: "false"
  test: "AKR"
  probe: "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/AKR/"
  pattern: "^[A-Za-z_0-9]+$"
  state: "0:Unknown"
  more: "http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html"

ideal:
  type: "scheme"
  name: "IDEAL at Maebashi Institute of Technology"
  alias: 
  provider: 
  provider_id: "MIR:00100518"
  sort_score: "1"
  primary: "false"
  forward: "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/idealItem.php?id=${ac}"
  redirect: "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/idealItem.php?id=$id"
  description: "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments."
  subject: "protein"
  location: "Japan"
  synonym: "Intrinsically Disordered proteins with Extensive Annotations and Literature"
  institution: "Faculty of Engineering, Maebashi Institute of Technology, Maebashi"
  prefixed: "false"
  test: "IID00001"
  probe: "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/idealItem.php?id=IID00001"
  pattern: "^IID\\d+$"
  state: "99:Up"
  more: "http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/"

stap:
  type: "scheme"
  name: "STAP at Korean Bioinformation Center"
  alias: 
  provider: 
  provider_id: "MIR:00100519"
  sort_score: "1"
  primary: "false"
  forward: "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=${ac}"
  redirect: "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$id"
  description: "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB)."
  subject: "structure; protein"
  location: "South Korea"
  synonym: "Statistical Torsional Angles Potentials of NMR"
  institution: "Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon"
  prefixed: "false"
  test: "1a24"
  probe: "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=1a24"
  pattern: "^[0-9][A-Za-z0-9]{3}$"
  state: "81:Down"
  more: "http://psb.kobic.re.kr/STAP/refinement/"

pocketome:
  type: "scheme"
  name: "Pocketome at UCSD Skaggs School"
  alias: 
  provider: 
  provider_id: "MIR:00100520"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pocketome.org/files/${ac}.html"
  redirect: "http://www.pocketome.org/files/$id.html"
  description: "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries."
  subject: "interaction; protein; structure"
  location: "USA"
  synonym: "Statistical Torsional Angles Potentials of NMR"
  institution: "UCSD Skaggs School of Pharmacy and Pharmaceutical Sciences, La Jolla, California"
  prefixed: "false"
  test: "1433C_TOBAC_1_252"
  probe: "http://www.pocketome.org/files/1433C_TOBAC_1_252.html"
  pattern: "^[A-Za-z_0-9]+"
  state: "68:Down"
  more: "http://www.pocketome.org/sfSearch.cgi?act=browseall"

gold.genome:
  type: "scheme"
  name: "GOLD genome at Department of Energy Joint Genome Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100521"
  sort_score: "4"
  primary: "false"
  forward: "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=${ac}"
  redirect: "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$id"
  description: "The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes."
  subject: "registry; genome"
  location: "USA"
  synonym: "Statistical Torsional Angles Potentials of NMR"
  institution: "Department of Energy Joint Genome Institute, Microbial Genomics and Metagenomics Program, California"
  prefixed: "false"
  test: "Gi07796"
  probe: "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=Gi07796"
  pattern: "^[Gi|Gc]\\d+$"
  state: "71:Down"
  more: "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi"

gold.meta:
  type: "scheme"
  name: "GOLD metadata at Department of Energy Joint Genome Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100522"
  sort_score: "4"
  primary: "false"
  forward: "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=${ac}"
  redirect: "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$id"
  description: "The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples."
  subject: "genome; annotation"
  location: "USA"
  synonym: "Statistical Torsional Angles Potentials of NMR"
  institution: "Department of Energy Joint Genome Institute, Microbial Genomics and Metagenomics Program, California"
  prefixed: "false"
  test: "Gm00047"
  probe: "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gm00047"
  pattern: "^Gm\\d+$"
  state: "66:Down"
  more: "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi"

bugbase.protocol:
  type: "scheme"
  name: "BugBase Protocol at University of London"
  alias: 
  provider: 
  provider_id: "MIR:00100523"
  sort_score: "2"
  primary: "false"
  forward: "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?protocol_id=${ac}&amp;action=view"
  redirect: "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?protocol_id=$id&amp;action=view"
  description: "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols."
  subject: "expression; microarray; microbial"
  location: "UK"
  synonym: "Statistical Torsional Angles Potentials of NMR"
  institution: "Bacterial Microarray Group, St George's, University of London"
  prefixed: "false"
  test: "67"
  probe: "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?protocol_id=67&amp;action=view"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://bugs.sgul.ac.uk/E-BUGS"

bugbase.expt:
  type: "scheme"
  name: "BugBase Expt at University of London"
  alias: 
  provider: 
  provider_id: "MIR:00100524"
  sort_score: "2"
  primary: "false"
  forward: "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=${ac}&action=view"
  redirect: "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=$id&action=view"
  description: "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments."
  subject: "expression; microbial; microarray"
  location: "UK"
  synonym: "Statistical Torsional Angles Potentials of NMR"
  institution: "Bacterial Microarray Group, St George's, University of London"
  prefixed: "false"
  test: "288"
  probe: "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=288&action=view"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://bugs.sgul.ac.uk/E-BUGS"

tol:
  type: "scheme"
  name: "Tree of Life Web"
  alias: 
  provider: 
  provider_id: "MIR:00100525"
  sort_score: "4"
  primary: "false"
  forward: "http://tolweb.org/${ac}"
  redirect: "http://tolweb.org/$id"
  description: "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny).   Each page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things."
  subject: "classification"
  location: "USA"
  synonym: "Statistical Torsional Angles Potentials of NMR"
  institution: "University of Arizona"
  prefixed: "false"
  test: "98034"
  probe: "http://tolweb.org/98034"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://tolweb.org/tree/"

vario:
  type: "scheme"
  name: "VariO through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100566"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/VARIO/VariO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/VARIO/VariO:$id"
  description: "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level."
  subject: "ontology; DNA; protein"
  location: "USA"
  synonym: "Variation Ontology"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0294"
  probe: "http://purl.bioontology.org/ontology/VARIO/VariO:0294"
  pattern: "^VariO:\\d+$"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/VARIO"

bptl/vario:
  type: "synonym"
  for: "vario"

ols/vario:
  type: "scheme"
  name: "VariO through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100677"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/vario/terms?obo_id=VariO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/vario/terms?obo_id=VariO:$id"
  description: "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level."
  subject: "ontology; DNA; protein"
  location: "UK"
  synonym: "Variation Ontology"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0294"
  probe: "https://www.ebi.ac.uk/ols/ontologies/vario/terms?obo_id=VariO:0294"
  pattern: "^VariO:\\d+$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/vario"

z063/vario:
  type: "scheme"
  name: "VariO at Lund University"
  alias: 
  provider: "z063"
  provider_id: "MIR:00100526"
  sort_score: "1"
  primary: "false"
  forward: "http://www.variationontology.org/cgi-bin/amivario/term-details.cgi?term=VariO:${ac}"
  redirect: "http://www.variationontology.org/cgi-bin/amivario/term-details.cgi?term=VariO:$id"
  description: "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level."
  subject: "ontology; DNA; protein"
  location: "Sweden"
  synonym: "Variation Ontology"
  institution: "Department of Experimental Medical Science, Lund University"
  prefixed: "true"
  test: "0294"
  probe: "http://www.variationontology.org/cgi-bin/amivario/term-details.cgi?term=VariO:0294"
  pattern: "^VariO:\\d+$"
  state: "93:Down"
  more: "http://www.variationontology.org/"

vipr:
  type: "scheme"
  name: "ViPR Strain at J. Craig Venter Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100527"
  sort_score: "4"
  primary: "false"
  forward: "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=${ac}&decorator=arena"
  redirect: "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$id&decorator=arena"
  description: "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures,  and host factor data. This collection references viral strain information."
  subject: "viral; strain"
  location: "USA"
  synonym: "Virus Pathogen Resource Strain"
  institution: "J. Craig Venter Institute, San Diego, California"
  prefixed: "false"
  test: "BeAn 70563"
  probe: "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=BeAn 70563&decorator=arena"
  pattern: "^[A-Za-z 0-9]+$"
  state: "52:Down"
  more: "http://www.viprbrc.org/brc/home.do?decorator=vipr"

epd:
  type: "scheme"
  name: "EPD at Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100528"
  sort_score: "1"
  primary: "false"
  forward: "http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=${ac}"
  redirect: "http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=$id"
  description: "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis."
  subject: "eukaryotic; DNA; sequence; expression"
  location: "Switzerland"
  synonym: "Eukaryotic Promoter Database"
  institution: "Swiss Institute of Bioinformatics (SIB), Geneva"
  prefixed: "false"
  test: "TA_H3"
  probe: "http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=TA_H3"
  pattern: "^[A-Z-_0-9]+$"
  state: "83:Down"
  more: "http://epd.vital-it.ch/"

rfam:
  type: "scheme"
  name: "Rfam at EMBL-EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100686"
  sort_score: "6"
  primary: "true"
  forward: "https://rfam.xfam.org/family/${ac}"
  redirect: "https://rfam.xfam.org/family/$id"
  description: "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion."
  subject: "nucleotide; domain"
  location: "UK"
  synonym: "RNA Family Database"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "RF00230"
  probe: "https://rfam.xfam.org/family/RF00230"
  pattern: "^RF\\d{5}$"
  state: "74:Down"
  more: "https://rfam.xfam.org/"

ebi/rfam:
  type: "synonym"
  for: "rfam"

fbol:
  type: "scheme"
  name: "Fungal Barcode at Fungal Biodiversity Centre"
  alias: 
  provider: 
  provider_id: "MIR:00100532"
  sort_score: "1"
  primary: "false"
  forward: "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=${ac}&Fields=All&ExactMatch=T"
  redirect: "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$id&Fields=All&ExactMatch=T"
  description: "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms."
  subject: "eukaryotic; classification"
  location: "Netherlands"
  synonym: "International Fungal Working Group; FBOL; Fungal Barcode of Life"
  institution: "Fungal Biodiversity Centre, Utrecht"
  prefixed: "false"
  test: "2224"
  probe: "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=2224&Fields=All&ExactMatch=T"
  pattern: "^\\d+$"
  state: "91:Down"
  more: "http://www.fungalbarcoding.org/"

aftol.taxonomy:
  type: "scheme"
  name: "AFTOL at University of Minnesota"
  alias: 
  provider: 
  provider_id: "MIR:00100533"
  sort_score: "4"
  primary: "false"
  forward: "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=${ac}"
  redirect: "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$id"
  description: "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species."
  subject: 
  location: "USA"
  synonym: "Assembling the Fungal Tree of Life"
  institution: "Department of Plant Biology, University of Minnesota, Minnesota"
  prefixed: "false"
  test: "959"
  probe: "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=959"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://aftol.org/data.php"

aspgd.locus:
  type: "scheme"
  name: "AspGD at Stanford Medical School"
  alias: 
  provider: 
  provider_id: "MIR:00100534"
  sort_score: "4"
  primary: "false"
  forward: "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=${ac}"
  redirect: "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$id"
  description: "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information."
  subject: 
  location: "USA"
  synonym: "Aspergillus Genome Database Locus"
  institution: "Department of Genetics, Stanford University Medical School, Stanford, California"
  prefixed: "false"
  test: "ASPL0000349247"
  probe: "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=ASPL0000349247"
  pattern: "^[A-Za-z_0-9]+$"
  state: "100:Up"
  more: "http://www.aspgd.org/"

aspgd.protein:
  type: "scheme"
  name: "AspGD Protein at Stanford Medical School"
  alias: 
  provider: 
  provider_id: "MIR:00100535"
  sort_score: "4"
  primary: "false"
  forward: "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=${ac}"
  redirect: "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$id"
  description: "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information."
  subject: 
  location: "USA"
  synonym: "Aspergillus Genome Database Locus"
  institution: "Department of Genetics, Stanford University Medical School, Stanford, California"
  prefixed: "false"
  test: "ASPL0000349247"
  probe: "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=ASPL0000349247"
  pattern: "^[A-Za-z_0-9]+$"
  state: "100:Up"
  more: "http://www.aspgd.org/"

autdb:
  type: "scheme"
  name: "AutDB at MindSpec"
  alias: 
  provider: 
  provider_id: "MIR:00100538"
  sort_score: "4"
  primary: "false"
  forward: "http://autism.mindspec.org/GeneDetail/${ac}"
  redirect: "http://autism.mindspec.org/GeneDetail/$id"
  description: "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder."
  subject: "human; gene; disorder"
  location: "USA"
  synonym: "Autism Database"
  institution: "MindSpec Inc., Fairfax, Virginia"
  prefixed: "false"
  test: "ADA"
  probe: "http://autism.mindspec.org/GeneDetail/ADA"
  pattern: "^[A-Z]+[A-Z-0-9]{2,}$"
  state: "79:Down"
  more: "http://autism.mindspec.org/autdb/"

bacmap.map:
  type: "scheme"
  name: "BacMap Genome Map at University of Alberta"
  alias: 
  provider: 
  provider_id: "MIR:00100539"
  sort_score: "1"
  primary: "false"
  forward: "http://bacmap.wishartlab.com/maps/${ac}/index.html"
  redirect: "http://bacmap.wishartlab.com/maps/$id/index.html"
  description: "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information."
  subject: "genome; microbial"
  location: "Canada"
  synonym: "Autism Database"
  institution: "Department of Computing Science, Food and Nutritional Science, University of Alberta, Edmonton"
  prefixed: "false"
  test: "AP011135"
  probe: "http://bacmap.wishartlab.com/maps/AP011135/index.html"
  pattern: "^\\w+(\\_)?\\d+(\\.\\d+)?$"
  state: "99:Up"
  more: "http://bacmap.wishartlab.com/"

bgee.family:
  type: "scheme"
  name: "Bgee at Lausanne"
  alias: 
  provider: 
  provider_id: "MIR:00100540"
  sort_score: "1"
  primary: "false"
  forward: "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=${ac}"
  redirect: "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$id"
  description: "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species."
  subject: "clustering; gene; expression"
  location: "Switzerland"
  synonym: "Autism Database"
  institution: "Swiss Institute of Bioinformatics, Lausanne"
  prefixed: "false"
  test: "ENSFM00500000270089"
  probe: "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=ENSFM00500000270089"
  pattern: "^(ENSFM|ENSGTV:)\\d+$"
  state: "79:Unknown"
  more: "http://bgee.unil.ch/bgee/bgee"

bgee.gene:
  type: "scheme"
  name: "Bgee gene"
  alias: 
  provider: 
  provider_id: "MIR:00100541"
  sort_score: "1"
  primary: "false"
  forward: "https://bgee.org/?page=gene&gene_id=${ac}"
  redirect: "https://bgee.org/?page=gene&gene_id=$id"
  description: "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee."
  subject: "expression; gene"
  location: "Switzerland"
  synonym: "Autism Database"
  institution: "SIB Swiss Institute of Bioinformatics and University of Lausanne"
  prefixed: "false"
  test: "FBgn0000015"
  probe: "https://bgee.org/?page=gene&gene_id=FBgn0000015"
  pattern: "^[A-Za-z]+\\d+$"
  state: "83:Unknown"
  more: "https://bgee.org/"

bgee.stage:
  type: "scheme"
  name: "Bgee at Lausanne"
  alias: 
  provider: 
  provider_id: "MIR:00100542"
  sort_score: "1"
  primary: "false"
  forward: "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id=${ac}&stage_children=on"
  redirect: "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id=$id&stage_children=on"
  description: "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages."
  subject: "expression; gene"
  location: "Switzerland"
  synonym: "Autism Database"
  institution: "Swiss Institute of Bioinformatics, Lausanne"
  prefixed: "false"
  test: "HsapDO:0000004"
  probe: "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id=HsapDO:0000004&stage_children=on"
  pattern: "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$"
  state: "79:Unknown"
  more: "http://bgee.unil.ch/bgee/bgee"

bgee.organ:
  type: "scheme"
  name: "Bgee at Lausanne"
  alias: 
  provider: 
  provider_id: "MIR:00100543"
  sort_score: "1"
  primary: "false"
  forward: "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id=${ac}&organ_children=on"
  redirect: "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id=$id&organ_children=on"
  description: "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures."
  subject: "expression; gene; controlled vocabulary"
  location: "Switzerland"
  synonym: "Autism Database"
  institution: "Swiss Institute of Bioinformatics, Lausanne"
  prefixed: "false"
  test: "EHDAA:2185"
  probe: "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id=EHDAA:2185&organ_children=on"
  pattern: "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$"
  state: "79:Unknown"
  more: "http://bgee.unil.ch/bgee/bgee"

biocarta.pathway:
  type: "scheme"
  name: "BioCarta Pathway at NCI"
  alias: 
  provider: 
  provider_id: "MIR:00100544"
  sort_score: "6"
  primary: "true"
  forward: "https://cgap.nci.nih.gov/Pathways/BioCarta/${ac}"
  redirect: "https://cgap.nci.nih.gov/Pathways/BioCarta/$id"
  description: "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps."
  subject: "pathway; image library"
  location: "USA"
  synonym: "Autism Database"
  institution: "National Cancer Institute, Center for Bioinformatics, Maryland"
  prefixed: "false"
  test: "h_aktPathway"
  probe: "https://cgap.nci.nih.gov/Pathways/BioCarta/h_aktPathway"
  pattern: "^([hm]\\_)?\\w+Pathway$"
  state: "87:Unknown"
  more: "https://www.biocarta.com/"

panther.pthcmp:
  type: "scheme"
  name: "PANTHER Pathway Component at USC (Los Angeles)"
  alias: 
  provider: 
  provider_id: "MIR:00100545"
  sort_score: "4"
  primary: "false"
  forward: "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=${ac}"
  redirect: "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$id"
  description: "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway components may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation."
  subject: "classification; protein; pathway"
  location: "USA"
  synonym: "Autism Database"
  institution: "Keck School of Medicine, University of Southern California"
  prefixed: "false"
  test: "P00266"
  probe: "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=P00266"
  pattern: "^G|P|U|C|S\\d{5}$"
  state: "99:Probably up"
  more: "http://www.pantherdb.org/"

gmd.profile:
  type: "scheme"
  name: "Golm Metabolome Database (Profile) at Max Planck Institute of Molecular Plant Physiology"
  alias: 
  provider: 
  provider_id: "MIR:00100546"
  sort_score: "1"
  primary: "false"
  forward: "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=${ac}"
  redirect: "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$id"
  description: "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues."
  subject: "assay; metabolite"
  location: "Germany"
  synonym: "Autism Database"
  institution: "Max Planck Institute of Molecular Plant Physiology, Potsdam"
  prefixed: "false"
  test: "10b38aaf-b977-4950-85b8-f4775f66658d"
  probe: "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=10b38aaf-b977-4950-85b8-f4775f66658d"
  pattern: "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"
  state: "100:Up"
  more: "http://gmd.mpimp-golm.mpg.de/"

gmd.gcms:
  type: "scheme"
  name: "Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology"
  alias: 
  provider: 
  provider_id: "MIR:00100547"
  sort_score: "1"
  primary: "false"
  forward: "http://gmd.mpimp-golm.mpg.de/Spectrums/${ac}"
  redirect: "http://gmd.mpimp-golm.mpg.de/Spectrums/$id"
  description: "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra."
  subject: "metabolite; mass spectrometry"
  location: "Germany"
  synonym: "Autism Database"
  institution: "Max Planck Institute of Molecular Plant Physiology, Potsdam"
  prefixed: "false"
  test: "53d583d8-40c6-40e1-9296-23f821cd77a5"
  probe: "http://gmd.mpimp-golm.mpg.de/Spectrums/53d583d8-40c6-40e1-9296-23f821cd77a5"
  pattern: "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"
  state: "100:Up"
  more: "http://gmd.mpimp-golm.mpg.de/"

gmd.ref:
  type: "scheme"
  name: "Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology"
  alias: 
  provider: 
  provider_id: "MIR:00100548"
  sort_score: "1"
  primary: "false"
  forward: "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/${ac}"
  redirect: "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$id"
  description: "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances."
  subject: "structure; catalogue; metabolite"
  location: "Germany"
  synonym: "Autism Database"
  institution: "Max Planck Institute of Molecular Plant Physiology, Potsdam"
  prefixed: "false"
  test: "8cf84adb-b4db-4807-ac98-0004247c35df"
  probe: "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/8cf84adb-b4db-4807-ac98-0004247c35df"
  pattern: "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"
  state: "100:Up"
  more: "http://gmd.mpimp-golm.mpg.de/"

gmd.analyte:
  type: "scheme"
  name: "Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology"
  alias: 
  provider: 
  provider_id: "MIR:00100549"
  sort_score: "1"
  primary: "false"
  forward: "http://gmd.mpimp-golm.mpg.de/Analytes/${ac}"
  redirect: "http://gmd.mpimp-golm.mpg.de/Analytes/$id"
  description: "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes."
  subject: "structure; mass spectrometry; metabolite"
  location: "Germany"
  synonym: "Autism Database"
  institution: "Max Planck Institute of Molecular Plant Physiology, Potsdam"
  prefixed: "false"
  test: "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80"
  probe: "http://gmd.mpimp-golm.mpg.de/Analytes/4f0fa9b6-514f-4ff4-98cc-0009bc08eb80"
  pattern: "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"
  state: "100:Up"
  more: "http://gmd.mpimp-golm.mpg.de/"

intact.molecule:
  type: "scheme"
  name: "IntAct Molecule at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100550"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/intact/molecule/${ac}"
  redirect: "https://www.ebi.ac.uk/intact/molecule/$id"
  description: "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules."
  subject: "interaction; protein"
  location: "UK"
  synonym: "Autism Database"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "EBI-366083"
  probe: "https://www.ebi.ac.uk/intact/molecule/EBI-366083"
  pattern: "^EBI\\-[0-9]+$"
  state: "39:Down"
  more: "https://www.ebi.ac.uk/intact/"

ebi/intact.molecule:
  type: "synonym"
  for: "intact.molecule"

depod:
  type: "scheme"
  name: "DEPOD at EMBL"
  alias: 
  provider: 
  provider_id: "MIR:00100551"
  sort_score: "1"
  primary: "false"
  forward: "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=${ac}"
  redirect: "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$id"
  description: "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources."
  subject: "interaction; structure; human"
  location: "Germany"
  synonym: "human DEPhOsphorylation Database"
  institution: "European Molecular Biology Laboratory EMBL, Heidelberg"
  prefixed: "false"
  test: "PTPN1"
  probe: "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=PTPN1"
  pattern: "^[A-Z0-9]+$"
  state: "43:Up"
  more: "http://www.depod.bioss.uni-freiburg.de"

cst:
  type: "scheme"
  name: "CST Pathways at Cell Signaling Technology"
  alias: 
  provider: 
  provider_id: "MIR:00100552"
  sort_score: "4"
  primary: "false"
  forward: "http://www.cellsignal.com/reference/pathway/${ac}.html"
  redirect: "http://www.cellsignal.com/reference/pathway/$id.html"
  description: "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways."
  subject: "immunogenetics; catalogue; pathway"
  location: "USA"
  synonym: "human DEPhOsphorylation Database"
  institution: "Cell Signaling Technology, Inc., Danvers, Massachusetts"
  prefixed: "false"
  test: "Akt_PKB"
  probe: "http://www.cellsignal.com/reference/pathway/Akt_PKB.html"
  pattern: "^[A-Za-z0-9_-]+$"
  state: "99:Up"
  more: "http://www.cellsignal.com/pathways/index.html"

cst.ab:
  type: "scheme"
  name: "CST Antibody at Cell Signaling Technology"
  alias: 
  provider: 
  provider_id: "MIR:00100553"
  sort_score: "4"
  primary: "false"
  forward: "http://www.cellsignal.com/products/${ac}.html"
  redirect: "http://www.cellsignal.com/products/$id.html"
  description: "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products."
  subject: "catalogue; interaction; immunogenetics"
  location: "USA"
  synonym: "human DEPhOsphorylation Database"
  institution: "Cell Signaling Technology, Inc., Danvers, Massachusetts"
  prefixed: "false"
  test: "3305"
  probe: "http://www.cellsignal.com/products/3305.html"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.cellsignal.com/catalog/index.html"

ndc:
  type: "scheme"
  name: "National Drug Code at Food and Drug Administration"
  alias: 
  provider: 
  provider_id: "MIR:00100554"
  sort_score: "6"
  primary: "true"
  forward: "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/${ac}"
  redirect: "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$id"
  description: "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily."
  subject: "drug; catalogue"
  location: "USA"
  synonym: "NDC"
  institution: "U.S. Food and Drug Administration, Maryland"
  prefixed: "false"
  test: "0002-1975-61"
  probe: "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/0002-1975-61"
  pattern: "^\\d+\\-\\d+\\-\\d+"
  state: "96:Up"
  more: "http://www.accessdata.fda.gov/scripts/cder/ndc/"

z064/ndc:
  type: "scheme"
  name: "Bio2RDF"
  alias: 
  provider: "z064"
  provider_id: "MIR:00100700"
  sort_score: "1"
  primary: "false"
  forward: "http://ndc.bio2rdf.org/describe/?url=http://bio2rdf.org/ndc:${ac}"
  redirect: "http://ndc.bio2rdf.org/describe/?url=http://bio2rdf.org/ndc:$id"
  description: "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily."
  subject: "drug; catalogue"
  location: 
  synonym: "NDC"
  institution: "Bio2RDF.org"
  prefixed: "false"
  test: "0002-1975-61"
  probe: "http://ndc.bio2rdf.org/describe/?url=http://bio2rdf.org/ndc:0002-1975-61"
  pattern: "^\\d+\\-\\d+\\-\\d+"
  state: "58:Down"
  more: "http://ndc.bio2rdf.org/fct"

phytozome.locus:
  type: "scheme"
  name: "Phytozome Locus at Joint Genome Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100556"
  sort_score: "4"
  primary: "false"
  forward: "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:${ac}"
  redirect: "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$id"
  description: "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information."
  subject: 
  location: "USA and Switzerland"
  synonym: "NDC"
  institution: "Joint Genome Institute, California, and the Center for Integrative Genomics, Lausanne"
  prefixed: "false"
  test: "Glyma0021s00410"
  probe: "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:Glyma0021s00410"
  pattern: "^[A-Za-z0-9]+$"
  state: "33:Down"
  more: "http://www.phytozome.net/"

subtilist:
  type: "scheme"
  name: "SubtiList at Pasteur Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100557"
  sort_score: "1"
  primary: "false"
  forward: "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+${ac}"
  redirect: "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$id"
  description: "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria. SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments."
  subject: 
  location: "France"
  synonym: "NDC"
  institution: "Pasteur Institute, Paris"
  prefixed: "false"
  test: "BG11523"
  probe: "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+BG11523"
  pattern: "^BG\\d+$"
  state: "99:Up"
  more: "http://genolist.pasteur.fr/SubtiList/"

dailymed:
  type: "scheme"
  name: "DailyMed at NLM"
  alias: 
  provider: 
  provider_id: "MIR:00100558"
  sort_score: "4"
  primary: "false"
  forward: "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=${ac}"
  redirect: "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$id"
  description: "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read."
  subject: "catalogue; drug"
  location: "USA"
  synonym: "NDC"
  institution: "U.S. National Library of Medicine, Bethesda, Maryland"
  prefixed: "false"
  test: "973a9333-fec7-46dd-8eb5-25738f06ee54"
  probe: "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=973a9333-fec7-46dd-8eb5-25738f06ee54"
  pattern: "^[A-Za-z0-9-]+"
  state: "77:Unknown"
  more: "https://dailymed.nlm.nih.gov/dailymed/"

sider.drug:
  type: "scheme"
  name: "SIDER Drug v2 at EMBL (Heidelberg)"
  alias: 
  provider: 
  provider_id: "MIR:00100559"
  sort_score: "1"
  primary: "false"
  forward: "http://sideeffects.embl.de/drugs/${ac}/"
  redirect: "http://sideeffects.embl.de/drugs/$id/"
  description: "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER."
  subject: "drug; phenotype"
  location: "Germany"
  synonym: "Side Effect Resource"
  institution: "Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg"
  prefixed: "false"
  test: "2244"
  probe: "http://sideeffects.embl.de/drugs/2244/"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://sideeffects.embl.de/"

sider.effect:
  type: "scheme"
  name: "SIDER Side Effect v2 at EMBL (Heidelberg)"
  alias: 
  provider: 
  provider_id: "MIR:00100560"
  sort_score: "1"
  primary: "false"
  forward: "http://sideeffects.embl.de/se/${ac}/"
  redirect: "http://sideeffects.embl.de/se/$id/"
  description: "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER."
  subject: "phenotype; drug"
  location: "Germany"
  synonym: "Side Effect Resource"
  institution: "Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg"
  prefixed: "false"
  test: "C0017565"
  probe: "http://sideeffects.embl.de/se/C0017565/"
  pattern: "^C\\d+$"
  state: "100:Up"
  more: "http://sideeffects.embl.de/"

wikigenes:
  type: "scheme"
  name: "WikiGenes at Massachusetts Institute of Technology"
  alias: 
  provider: 
  provider_id: "MIR:00100567"
  sort_score: "4"
  primary: "false"
  forward: "http://www.wikigenes.org/e/gene/e/${ac}.html"
  redirect: "http://www.wikigenes.org/e/gene/e/$id.html"
  description: "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process."
  subject: "interaction; disease; gene"
  location: "USA"
  synonym: "Side Effect Resource"
  institution: "Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts"
  prefixed: "false"
  test: "3771877"
  probe: "http://www.wikigenes.org/e/gene/e/3771877.html"
  pattern: "^\\d+$"
  state: "81:Down"
  more: "http://www.wikigenes.org/"

broad:
  type: "scheme"
  name: "Broad Fungal Genome Initiative at Broad Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100569"
  sort_score: "6"
  primary: "true"
  forward: "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=${ac}"
  redirect: "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$id"
  description: "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae."
  subject: "disease; fungal; genome"
  location: "USA"
  synonym: "Magnaporthe comparative genomics database"
  institution: "Broad Institute of MIT and Harvard, Cambridge, Massachuchetts"
  prefixed: "false"
  test: "S7000002168151102"
  probe: "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=S7000002168151102"
  pattern: "^S\\d+$"
  state: "55:Unknown"
  more: "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/"

coriell:
  type: "scheme"
  name: "Coriell Cell Repositories at Coriell Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100570"
  sort_score: "4"
  primary: "false"
  forward: "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=${ac}"
  redirect: "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$id"
  description: "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world."
  subject: "mammalian; catalogue; human"
  location: "USA"
  synonym: "Magnaporthe comparative genomics database"
  institution: "Coriell Institute for Medical Research, New Jersey"
  prefixed: "false"
  test: "GM17027"
  probe: "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM17027"
  pattern: "^[A-Z]{2}\\d+$"
  state: "90:Up"
  more: "http://ccr.coriell.org/"

corum:
  type: "scheme"
  name: "CORUM at Institute for Bioinformatics and Systems Biology (Germany)"
  alias: 
  provider: 
  provider_id: "MIR:00100571"
  sort_score: "1"
  primary: "false"
  forward: "https://mips.helmholtz-muenchen.de/corum/?id=${ac}"
  redirect: "https://mips.helmholtz-muenchen.de/corum/?id=$id"
  description: "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded."
  subject: "protein; mammalian"
  location: "Germany"
  synonym: "Magnaporthe comparative genomics database"
  institution: "Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum M&amp;uuml;nchen-German Research Center for Environmental Health, Neuherberg"
  prefixed: "false"
  test: "100"
  probe: "https://mips.helmholtz-muenchen.de/corum/?id=100"
  pattern: "^\\d+$"
  state: "51:Down"
  more: "https://mips.helmholtz-muenchen.de/genre/proj/corum/"

ecoliwiki:
  type: "scheme"
  name: "EcoliWiki at Texas Agrilife Research"
  alias: 
  provider: 
  provider_id: "MIR:00100573"
  sort_score: "4"
  primary: "false"
  forward: "http://ecoliwiki.net/colipedia/index.php/${ac}:Gene"
  redirect: "http://ecoliwiki.net/colipedia/index.php/$id:Gene"
  description: "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes."
  subject: "genome; microbial"
  location: "USA"
  synonym: "Magnaporthe comparative genomics database"
  institution: "Texas Agrilife Research, Texas A&amp;M University College Station"
  prefixed: "false"
  test: "aaeA"
  probe: "http://ecoliwiki.net/colipedia/index.php/aaeA:Gene"
  pattern: "^[A-Za-z0-9-]+$"
  state: "97:Up"
  more: "http://ecoliwiki.net/colipedia/"

genprop:
  type: "scheme"
  name: "Genome Properties"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100910"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/interpro/genomeproperties/#${ac}"
  redirect: "https://www.ebi.ac.uk/interpro/genomeproperties/#$id"
  description: "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome."
  subject: "controlled vocabulary; microbial"
  location: "UK"
  synonym: "Magnaporthe comparative genomics database"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "GenProp0699"
  probe: "https://www.ebi.ac.uk/interpro/genomeproperties/#GenProp0699"
  pattern: "^GenProp\\d+$"
  state: "0:Unknown"
  more: "https://www.ebi.ac.uk/interpro/genomeproperties/"

ebi/genprop:
  type: "synonym"
  for: "genprop"

jstor:
  type: "scheme"
  name: "JSTOR Online"
  alias: 
  provider: 
  provider_id: "MIR:00100575"
  sort_score: "4"
  primary: "false"
  forward: "http://www.jstor.org/stable/${ac}"
  redirect: "http://www.jstor.org/stable/$id"
  description: "JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration."
  subject: "bibliography"
  location: "USA"
  synonym: "Journal Storage"
  institution: "Ithaka Harbors, Inc., New York"
  prefixed: "false"
  test: "3075966"
  probe: "http://www.jstor.org/stable/3075966"
  pattern: "^\\d+$"
  state: "84:Up"
  more: "http://www.jstor.org/"

ma:
  type: "scheme"
  name: "Mouse Adult Gross Anatomy at The Jackson Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100578"
  sort_score: "6"
  primary: "true"
  forward: "http://www.informatics.jax.org/searches/AMA.cgi?id=MA:${ac}"
  redirect: "http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$id"
  description: "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)"
  subject: "ontology"
  location: "USA"
  synonym: "Journal Storage"
  institution: "The Jackson Laboratory, Bar Harbor, Maine"
  prefixed: "true"
  test: "0002502"
  probe: "http://www.informatics.jax.org/searches/AMA.cgi?id=MA:0002502"
  pattern: "^MA:\\d+$"
  state: "100:Up"
  more: "http://www.informatics.jax.org/"

bptl/ma:
  type: "scheme"
  name: "Mouse Adult Gross Anatomy through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100576"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/MA/MA:${ac}"
  redirect: "http://purl.bioontology.org/ontology/MA/MA:$id"
  description: "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)"
  subject: "ontology"
  location: "USA"
  synonym: "Journal Storage"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0002502"
  probe: "http://purl.bioontology.org/ontology/MA/MA:0002502"
  pattern: "^MA:\\d+$"
  state: "86:Up"
  more: "http://bioportal.bioontology.org/ontologies/MA"

ols/ma:
  type: "scheme"
  name: "Mouse Adult Gross Anatomy through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100577"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/ma/terms?obo_id=MA:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/ma/terms?obo_id=MA:$id"
  description: "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)"
  subject: "ontology"
  location: "UK"
  synonym: "Journal Storage"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0002502"
  probe: "https://www.ebi.ac.uk/ols/ontologies/ma/terms?obo_id=MA:0002502"
  pattern: "^MA:\\d+$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/ma"

uberon:
  type: "scheme"
  name: "UBERON through bioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100579"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/UBERON/UBERON:${ac}"
  redirect: "http://purl.bioontology.org/ontology/UBERON/UBERON:$id"
  description: "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data."
  subject: "ontology"
  location: "USA"
  synonym: "Uber Anatomy Ontology"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0008203"
  probe: "http://purl.bioontology.org/ontology/UBERON/UBERON:0008203"
  pattern: "^UBERON\\:\\d+$"
  state: "91:Up"
  more: "http://bioportal.bioontology.org/ontologies/UBERON"

bptl/uberon:
  type: "synonym"
  for: "uberon"

ols/uberon:
  type: "scheme"
  name: "UBERON through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100580"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/uberon/terms?obo_id=UBERON:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/uberon/terms?obo_id=UBERON:$id"
  description: "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data."
  subject: "ontology"
  location: "UK"
  synonym: "Uber Anatomy Ontology"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0008203"
  probe: "https://www.ebi.ac.uk/ols/ontologies/uberon/terms?obo_id=UBERON:0008203"
  pattern: "^UBERON\\:\\d+$"
  state: "98:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/uberon"

unimod:
  type: "scheme"
  name: "Unimod at Matrix Sciences Ltd."
  alias: 
  provider: 
  provider_id: "MIR:00100581"
  sort_score: "2"
  primary: "false"
  forward: "http://www.unimod.org/modifications_view.php?editid1=${ac}"
  redirect: "http://www.unimod.org/modifications_view.php?editid1=$id"
  description: "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide)."
  subject: "mass spectrometry; protein"
  location: "UK"
  synonym: "Uber Anatomy Ontology"
  institution: "Matrix Science Ltd., London"
  prefixed: "false"
  test: "1200"
  probe: "http://www.unimod.org/modifications_view.php?editid1=1200"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://www.unimod.org/"

vbrc:
  type: "scheme"
  name: "VBRC at University of Alabama"
  alias: 
  provider: 
  provider_id: "MIR:00100582"
  sort_score: "4"
  primary: "false"
  forward: "http://vbrc.org/gene_detail.asp?gene_id=${ac}"
  redirect: "http://vbrc.org/gene_detail.asp?gene_id=$id"
  description: "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis."
  subject: "genome; viral"
  location: "USA and Canada"
  synonym: "Viral Bioinformatics Resource Center"
  institution: "University of Alabama, Birmingham and the University of Victoria, British Columbia"
  prefixed: "false"
  test: "35742"
  probe: "http://vbrc.org/gene_detail.asp?gene_id=35742"
  pattern: "^\\d+$"
  state: "30:Down"
  more: "http://vbrc.org/"

viralzone:
  type: "scheme"
  name: "ViralZone at SIB"
  alias: 
  provider: 
  provider_id: "MIR:00100583"
  sort_score: "1"
  primary: "false"
  forward: "http://viralzone.expasy.org/all_by_protein/${ac}.html"
  redirect: "http://viralzone.expasy.org/all_by_protein/$id.html"
  description: "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures."
  subject: "image library; viral"
  location: "Switzerland"
  synonym: "Viral Bioinformatics Resource Center"
  institution: "Swiss Institute of Bioinformatics, Centre M&#xE9;dical Universitaire, Geneva"
  prefixed: "false"
  test: "992"
  probe: "http://viralzone.expasy.org/all_by_protein/992.html"
  pattern: "^\\d+$"
  state: "61:Down"
  more: "http://www.expasy.org/viralzone/"

go.ref:
  type: "scheme"
  name: "Gene Ontology Reference at The Gene Ontology Consortium"
  alias: 
  provider: 
  provider_id: "MIR:00100584"
  sort_score: "4"
  primary: "false"
  forward: "http://www.geneontology.org/cgi-bin/references.cgi#${ac}"
  redirect: "http://www.geneontology.org/cgi-bin/references.cgi#$id"
  description: "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made."
  subject: "controlled vocabulary"
  location: "USA"
  synonym: "GO reference collection"
  institution: "The Gene Ontology Consortium"
  prefixed: "false"
  test: "GO_REF:0000041"
  probe: "http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000041"
  pattern: "^GO_REF:\\d{7}$"
  state: "89:Down"
  more: "http://www.geneontology.org/cgi-bin/references.cgi"

rgd.qtl:
  type: "scheme"
  name: "Rat Genome Database qTL at Medical College of Wisconsin"
  alias: 
  provider: 
  provider_id: "MIR:00100586"
  sort_score: "4"
  primary: "false"
  forward: "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=${ac}"
  redirect: "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$id"
  description: "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes."
  subject: "gene; phenotype"
  location: "USA"
  synonym: "GO reference collection"
  institution: "Medical College of Wisconsin, Milwaukee, Wisconsin"
  prefixed: "false"
  test: "1354581"
  probe: "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=1354581"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://rgd.mcw.edu/"

rgd.strain:
  type: "scheme"
  name: "Rat Genome Database strain at Medical College of Wisconsin"
  alias: 
  provider: 
  provider_id: "MIR:00100587"
  sort_score: "4"
  primary: "false"
  forward: "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=${ac}"
  redirect: "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$id"
  description: "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology."
  subject: 
  location: "USA"
  synonym: "GO reference collection"
  institution: "Medical College of Wisconsin, Milwaukee, Wisconsin"
  prefixed: "false"
  test: "5688061"
  probe: "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=5688061"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://rgd.mcw.edu/"

door:
  type: "scheme"
  name: "DOOR v1 at University of Georgia"
  alias: 
  provider: 
  provider_id: "MIR:00100588"
  sort_score: "4"
  primary: "false"
  forward: "http://csbl.bmb.uga.edu/DOOR/operon.php?id=${ac}"
  redirect: "http://csbl.bmb.uga.edu/DOOR/operon.php?id=$id"
  description: "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes."
  subject: 
  location: "USA"
  synonym: "Database for prOkaryotic OpeRons"
  institution: "Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia"
  prefixed: "false"
  test: "1398574"
  probe: "http://csbl.bmb.uga.edu/DOOR/operon.php?id=1398574"
  pattern: "^\\d+$"
  state: "22:Up"
  more: "http://csbl.bmb.uga.edu/DOOR/operon.php"

degradome:
  type: "scheme"
  name: "Degradome Database at"
  alias: 
  provider: 
  provider_id: "MIR:00100589"
  sort_score: "1"
  primary: "false"
  forward: "http://degradome.uniovi.es/cgi-bin/protease/${ac}"
  redirect: "http://degradome.uniovi.es/cgi-bin/protease/$id"
  description: "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced."
  subject: 
  location: "Spain"
  synonym: "Database for prOkaryotic OpeRons"
  institution: "Departamento de Bioqu&amp;amp;iacute;mica y Biolog&amp;amp;iacute;a Molecular, Facultad de Medicina, Universidad de Oviedo"
  prefixed: "false"
  test: "Ax1"
  probe: "http://degradome.uniovi.es/cgi-bin/protease/Ax1"
  pattern: "^[AMCST][0-9x][0-9]$"
  state: "99:Up"
  more: "http://degradome.uniovi.es/"

dbd:
  type: "scheme"
  name: "DBD at MRC Laboratory of Molecular Biology"
  alias: 
  provider: 
  provider_id: "MIR:00100590"
  sort_score: "2"
  primary: "false"
  forward: "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:${ac}+cat:DBD"
  redirect: "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$id+cat:DBD"
  description: "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins."
  subject: 
  location: "UK"
  synonym: "Transcription Factor Database"
  institution: "MRC Laboratory of Molecular Biology, Cambridge"
  prefixed: "false"
  test: "0045310"
  probe: "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:0045310+cat:DBD"
  pattern: "^\\d+$"
  state: "88:Down"
  more: "http://www.transcriptionfactor.org/"

datf:
  type: "scheme"
  name: "DATF through PlantTFDB"
  alias: 
  provider: 
  provider_id: "MIR:00100591"
  sort_score: "1"
  primary: "false"
  forward: "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=${ac}"
  redirect: "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$id"
  description: "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals."
  subject: 
  location: "Peoples Republic of China."
  synonym: "Database of Arabidopsis transcription factors"
  institution: "Center for Bioinformatics, Peking"
  prefixed: "false"
  test: "AT1G01030.1"
  probe: "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=AT1G01030.1"
  pattern: "^AT[1-5]G\\d{5}(\\.\\d+)?$"
  state: "90:Up"
  more: "http://datf.cbi.pku.edu.cn/"

iuphar.ligand:
  type: "scheme"
  name: "IUPHAR ligand at University of Edinburgh"
  alias: 
  provider: 
  provider_id: "MIR:00100592"
  sort_score: "6"
  primary: "true"
  forward: "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=${ac}"
  redirect: "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$id"
  description: "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands."
  subject: 
  location: "UK"
  synonym: "Database of Arabidopsis transcription factors"
  institution: "Centre for Cardiovascular Science, University of Edinburgh, Edinburgh"
  prefixed: "false"
  test: "1755"
  probe: "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=1755"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all"

molbase:
  type: "scheme"
  name: "Molbase at Chinese Academy of Sciences"
  alias: 
  provider: 
  provider_id: "MIR:00100593"
  sort_score: "1"
  primary: "false"
  forward: "http://www.molbase.com/en/index.php?app=search&search_keyword=${ac}"
  redirect: "http://www.molbase.com/en/index.php?app=search&search_keyword=$id"
  description: "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier."
  subject: 
  location: "China"
  synonym: "Database of Arabidopsis transcription factors"
  institution: "Chinese Academy of Sciences, Xuhui District  Shanghai"
  prefixed: "false"
  test: "128796-39-4"
  probe: "http://www.molbase.com/en/index.php?app=search&search_keyword=128796-39-4"
  pattern: "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$"
  state: "79:Up"
  more: "http://www.molbase.com/"

yrcpdr:
  type: "scheme"
  name: "YRC PDR at University of Washington"
  alias: 
  provider: 
  provider_id: "MIR:00100594"
  sort_score: "4"
  primary: "false"
  forward: "http://yeastrc.org/pdr/viewProtein.do?id=${ac}"
  redirect: "http://yeastrc.org/pdr/viewProtein.do?id=$id"
  description: "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions."
  subject: 
  location: "USA"
  synonym: "Yeast Resource Center Public Data Repository"
  institution: "Department of Biochemistry, University of Washington, Seattle"
  prefixed: "false"
  test: "2673500"
  probe: "http://yeastrc.org/pdr/viewProtein.do?id=2673500"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.yeastrc.org/pdr/"

yid:
  type: "scheme"
  name: "Yeast Intron Database version 3 at Baskin School of Engineering"
  alias: 
  provider: 
  provider_id: "MIR:00100595"
  sort_score: "4"
  primary: "false"
  forward: "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=${ac}"
  redirect: "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$id"
  description: "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]."
  subject: "DNA; sequence; eukaryotic"
  location: "USA"
  synonym: "Yeast Resource Center Public Data Repository"
  institution: "Baskin School of Engineering, Center for Molecular Biology of RNA, University of California, Santa Cruz, California"
  prefixed: "false"
  test: "SNR17A"
  probe: "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=SNR17A"
  pattern: "^[A-Z0-9]+$"
  state: "26:Down"
  more: "http://compbio.soe.ucsc.edu/yeast_introns.html"

funcbase.fly:
  type: "scheme"
  name: "FuncBase Fly at Harvard Medical School"
  alias: 
  provider: 
  provider_id: "MIR:00100596"
  sort_score: "4"
  primary: "false"
  forward: "http://func.mshri.on.ca/fly/genes/list_functional_scores/${ac}"
  redirect: "http://func.mshri.on.ca/fly/genes/list_functional_scores/$id"
  description: "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data."
  subject: 
  location: "USA"
  synonym: "Yeast Resource Center Public Data Repository"
  institution: "Harvard Medical School, Boston, Massachusetts"
  prefixed: "false"
  test: "10194"
  probe: "http://func.mshri.on.ca/fly/genes/list_functional_scores/10194"
  pattern: "^\\d+$"
  state: "88:Probably up"
  more: "http://func.mshri.on.ca/fly"

funcbase.human:
  type: "scheme"
  name: "FuncBase Human at Harvard Medical School"
  alias: 
  provider: 
  provider_id: "MIR:00100597"
  sort_score: "4"
  primary: "false"
  forward: "http://func.mshri.on.ca/human/genes/list_functional_scores/${ac}"
  redirect: "http://func.mshri.on.ca/human/genes/list_functional_scores/$id"
  description: "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data."
  subject: 
  location: "USA"
  synonym: "Yeast Resource Center Public Data Repository"
  institution: "Harvard Medical School, Boston, Massachusetts"
  prefixed: "false"
  test: "119514"
  probe: "http://func.mshri.on.ca/human/genes/list_functional_scores/119514"
  pattern: "^\\d+$"
  state: "88:Probably up"
  more: "http://func.mshri.on.ca/human/"

funcbase.mouse:
  type: "scheme"
  name: "FuncBase Mouse at Harvard Medical School"
  alias: 
  provider: 
  provider_id: "MIR:00100598"
  sort_score: "4"
  primary: "false"
  forward: "http://func.mshri.on.ca/mouse/genes/list_functional_scores/${ac}"
  redirect: "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$id"
  description: "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse."
  subject: 
  location: "USA"
  synonym: "Yeast Resource Center Public Data Repository"
  institution: "Harvard Medical School, Boston, Massachusetts"
  prefixed: "false"
  test: "1351341"
  probe: "http://func.mshri.on.ca/mouse/genes/list_functional_scores/1351341"
  pattern: "^\\d+$"
  state: "88:Probably up"
  more: "http://func.mshri.on.ca/mouse/"

funcbase.yeast:
  type: "scheme"
  name: "FuncBase Yeast at Harvard Medical School"
  alias: 
  provider: 
  provider_id: "MIR:00100599"
  sort_score: "4"
  primary: "false"
  forward: "http://func.mshri.on.ca/yeast/genes/list_functional_scores/${ac}"
  redirect: "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$id"
  description: "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast."
  subject: 
  location: "USA"
  synonym: "Yeast Resource Center Public Data Repository"
  institution: "Harvard Medical School, Boston, Massachusetts"
  prefixed: "false"
  test: "2701"
  probe: "http://func.mshri.on.ca/yeast/genes/list_functional_scores/2701"
  pattern: "^\\d+$"
  state: "88:Probably up"
  more: "http://func.mshri.on.ca/yeast"

ydpm:
  type: "scheme"
  name: "YDPM at Stanford University School of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100600"
  sort_score: "4"
  primary: "false"
  forward: "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=${ac}"
  redirect: "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$id"
  description: "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition."
  subject: 
  location: "USA"
  synonym: "Yeast Deletion Project and Proteomics of Mitochondria Database"
  institution: "Stanford University School of Medicine, Stanford, California"
  prefixed: "false"
  test: "YAL001C"
  probe: "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=YAL001C"
  pattern: "^Y[A-Z]{2}\\d+[CW]$"
  state: "99:Up"
  more: "http://www-deletion.stanford.edu/YDPM/"

wb.rnai:
  type: "scheme"
  name: "WormBase RNAi"
  alias: 
  provider: 
  provider_id: "MIR:00100601"
  sort_score: "2"
  primary: "false"
  forward: "https://www.wormbase.org/species/c_elegans/rnai/${ac}"
  redirect: "https://www.wormbase.org/species/c_elegans/rnai/$id"
  description: "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes."
  subject: 
  location: "UK"
  synonym: "Yeast Deletion Project and Proteomics of Mitochondria Database"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "WBRNAi00086878"
  probe: "https://www.wormbase.org/species/c_elegans/rnai/WBRNAi00086878"
  pattern: "^WBRNAi\\d{8}$"
  state: "100:Up"
  more: "https://www.wormbase.org/"

pass2:
  type: "scheme"
  name: "PASS2 at National centre for Biological Sciences (India)"
  alias: 
  provider: 
  provider_id: "MIR:00100603"
  sort_score: "1"
  primary: "false"
  forward: "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=${ac}"
  redirect: "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$id"
  description: "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity."
  subject: 
  location: "India"
  synonym: "Protein Alignments organised as Structural Superfamilies"
  institution: "National centre for Biological Sciences, TIFR, GKVK campus, Bangalore, Karnataka"
  prefixed: "false"
  test: "46977"
  probe: "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=46977"
  pattern: "^\\d+$"
  state: "91:Up"
  more: "http://caps.ncbs.res.in/pass2/"

iceberg.element:
  type: "scheme"
  name: "ICEberg element at Shanghai Jiaotong University"
  alias: 
  provider: 
  provider_id: "MIR:00100604"
  sort_score: "1"
  primary: "false"
  forward: "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=${ac}"
  redirect: "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$id"
  description: "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements."
  subject: 
  location: "China"
  synonym: "Protein Alignments organised as Structural Superfamilies"
  institution: "State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp;amp;amp;amp; Biotechnology, Shanghai Jiaotong University, Shanghai"
  prefixed: "false"
  test: "100"
  probe: "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=100"
  pattern: "^\\d+$"
  state: "97:Probably up"
  more: "http://db-mml.sjtu.edu.cn/ICEberg/"

iceberg.family:
  type: "scheme"
  name: "ICEberg family at Shanghai Jiaotong University"
  alias: 
  provider: 
  provider_id: "MIR:00100605"
  sort_score: "1"
  primary: "false"
  forward: "http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=${ac}"
  redirect: "http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$id"
  description: "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families."
  subject: 
  location: "China"
  synonym: "Protein Alignments organised as Structural Superfamilies"
  institution: "State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp;amp; Biotechnology, Shanghai Jiaotong University, Shanghai"
  prefixed: "false"
  test: "1"
  probe: "http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=1"
  pattern: "^\\d+$"
  state: "97:Probably up"
  more: "http://db-mml.sjtu.edu.cn/ICEberg/"

vfdb.genus:
  type: "scheme"
  name: "VFDB Genus at Institute of Pathogen Biology"
  alias: 
  provider: 
  provider_id: "MIR:00100606"
  sort_score: "1"
  primary: "false"
  forward: "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=${ac}"
  redirect: "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$id"
  description: "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus."
  subject: 
  location: "China"
  synonym: "Virulence Factor Database genus"
  institution: "State Key Laboratory for Molecular Virology and Genetic Engineering, Institute of Pathogen Biology, Chinese Academy Medical Sciences and Peking Union Medical College, Beijing"
  prefixed: "false"
  test: "Chlamydia"
  probe: "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=Chlamydia"
  pattern: "^\\w+$"
  state: "100:Up"
  more: "http://www.mgc.ac.cn/VFs/"

vfdb.gene:
  type: "scheme"
  name: "VFDB Gene at Institute of Pathogen Biology"
  alias: 
  provider: 
  provider_id: "MIR:00100607"
  sort_score: "1"
  primary: "false"
  forward: "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=${ac}"
  redirect: "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$id"
  description: "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes."
  subject: 
  location: "China"
  synonym: "Virulence Factor Database genus"
  institution: "State Key Laboratory for Molecular Virology and Genetic Engineering, Institute of Pathogen Biology, Chinese Academy Medical Sciences and Peking Union Medical College, Beijing"
  prefixed: "false"
  test: "VFG2154"
  probe: "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=VFG2154"
  pattern: "^\\w+$"
  state: "100:Up"
  more: "http://www.mgc.ac.cn/VFs/"

mesh.2013:
  type: "scheme"
  name: "MeSH 2013 at National Library of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100608"
  sort_score: "4"
  primary: "false"
  forward: "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=${ac}&view=expanded"
  redirect: "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$id&view=expanded"
  description: "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013."
  subject: 
  location: "USA"
  synonym: "Virulence Factor Database genus"
  institution: "U.S. National Library of Medicine, National Institute of Health, Maryland"
  prefixed: "false"
  test: "17165"
  probe: "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=17165&view=expanded"
  pattern: "^[A-Za-z0-9]+$"
  state: "56:Down"
  more: "http://www.nlm.nih.gov/mesh/"

kegg.module:
  type: "scheme"
  name: "KEGG Module at Kyoto University Bioinformatics Center"
  alias: 
  provider: 
  provider_id: "MIR:00100609"
  sort_score: "6"
  primary: "true"
  forward: "http://www.kegg.jp/entry/${ac}"
  redirect: "http://www.kegg.jp/entry/$id"
  description: "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules."
  subject: "clustering"
  location: "Japan"
  synonym: "KEGG"
  institution: "Department of Computational Biology, University of Tokyo, Tokyo"
  prefixed: "false"
  test: "M00002"
  probe: "http://www.kegg.jp/entry/M00002"
  pattern: "^([a-z]{3,5}_)?M\\d{5}$"
  state: "100:Up"
  more: "http://www.kegg.jp/kegg/module.html"

kegg.disease:
  type: "scheme"
  name: "KEGG Disease at Kyoto University Bioinformatics Center"
  alias: 
  provider: 
  provider_id: "MIR:00100610"
  sort_score: "6"
  primary: "true"
  forward: "http://www.kegg.jp/entry/${ac}"
  redirect: "http://www.kegg.jp/entry/$id"
  description: "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system."
  subject: "disease"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center, Kyoto"
  prefixed: "false"
  test: "H00076"
  probe: "http://www.kegg.jp/entry/H00076"
  pattern: "^H\\d+$"
  state: "100:Up"
  more: "http://www.genome.jp/kegg/disease/"

medlineplus:
  type: "scheme"
  name: "MedlinePlus at NCBI"
  alias: 
  provider: 
  provider_id: "MIR:00100611"
  sort_score: "4"
  primary: "false"
  forward: "http://www.nlm.nih.gov/medlineplus/ency/article/${ac}.htm"
  redirect: "http://www.nlm.nih.gov/medlineplus/ency/article/$id.htm"
  description: "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language."
  subject: "schema.org; human; encyclopedia"
  location: "USA"
  synonym: "KEGG"
  institution: "NCBI, NIH, Bethesda, Maryland"
  prefixed: "false"
  test: "002804"
  probe: "http://www.nlm.nih.gov/medlineplus/ency/article/002804.htm"
  pattern: "^\\d+$"
  state: "82:Down"
  more: "http://www.nlm.nih.gov/medlineplus/"

ligandbox:
  type: "scheme"
  name: "LigandBox at"
  alias: 
  provider: 
  provider_id: "MIR:00100612"
  sort_score: "1"
  primary: "false"
  forward: "http://ligandbox.protein.osaka-u.ac.jp/ligandbox/cgi-bin/liginf.cgi?id=${ac}"
  redirect: "http://ligandbox.protein.osaka-u.ac.jp/ligandbox/cgi-bin/liginf.cgi?id=$id"
  description: "LigandBox is a database of 3D compound structures.  Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds."
  subject: "structure; chemical"
  location: "Japan"
  synonym: "KEGG"
  institution: "nstitute for Protein Research, Osaka University and Fujitsu Kyushu R&amp;D Center, Life Science Systems Dept., Fujitsu"
  prefixed: "false"
  test: "D00001"
  probe: "http://ligandbox.protein.osaka-u.ac.jp/ligandbox/cgi-bin/liginf.cgi?id=D00001"
  pattern: "^D\\d{5}"
  state: "99:Up"
  more: "http://ligandbox.protein.osaka-u.ac.jp/ligandbox//cgi-bin/index.cgi?LANG=en"

glycoepitope:
  type: "scheme"
  name: "GlycoEpitope at Ritsumeikan University"
  alias: 
  provider: 
  provider_id: "MIR:00100613"
  sort_score: "1"
  primary: "false"
  forward: "https://www.glycoepitope.jp/epitopes/${ac}"
  redirect: "https://www.glycoepitope.jp/epitopes/$id"
  description: "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes."
  subject: "immunogenetics; interaction"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kawasaki laboratory, Research Center for Glycobiotechnology, Ritsumeikan University"
  prefixed: "false"
  test: "EP0311"
  probe: "https://www.glycoepitope.jp/epitopes/EP0311"
  pattern: "^EP\\d{4}$"
  state: "84:Unknown"
  more: "https://www.glycoepitope.jp/epitopes/"

jcggdb:
  type: "scheme"
  name: "JCGGDB at Advanced Science Institute (Japan)"
  alias: 
  provider: 
  provider_id: "MIR:00100614"
  sort_score: "1"
  primary: "false"
  forward: "http://jcggdb.jp/idb/jcggdb/${ac}"
  redirect: "http://jcggdb.jp/idb/jcggdb/$id"
  description: "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc."
  subject: "polysaccharide; structure; lipid; protein"
  location: "Japan"
  synonym: "Japan Consortium for Glycobiology and Glycotechnology DataBase"
  institution: "Advanced Science Institute(ASI), Chemical Biology Department Systems Glycobiology research Group, Saitama"
  prefixed: "false"
  test: "JCGG-STR008690"
  probe: "http://jcggdb.jp/idb/jcggdb/JCGG-STR008690"
  pattern: "^JCGG-STR\\d{6}$"
  state: "68:Down"
  more: "http://jcggdb.jp/index_en.html"

noncodev4.gene:
  type: "scheme"
  name: "NONCODE v4 Gene at Chinese Academy of Sciences"
  alias: 
  provider: 
  provider_id: "MIR:00100616"
  sort_score: "1"
  primary: "false"
  forward: "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=${ac}"
  redirect: "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$id"
  description: "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions."
  subject: "gene; expression; sequence"
  location: "China"
  synonym: "Japan Consortium for Glycobiology and Glycotechnology DataBase"
  institution: "Bioinformatics Research Group, Chinese Academy of Sciences, Beijing"
  prefixed: "false"
  test: "NONHSAG00001"
  probe: "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=NONHSAG00001"
  pattern: "^NONHSAG\\d{5}$"
  state: "54:Down"
  more: "http://www.bioinfo.org/NONCODEv4/"

noncodev4.rna:
  type: "scheme"
  name: "NONCODE v4 Transcript at Chinese Academy of Sciences"
  alias: 
  provider: 
  provider_id: "MIR:00100617"
  sort_score: "1"
  primary: "false"
  forward: "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=${ac}"
  redirect: "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$id"
  description: "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts."
  subject: "expression; nucleotide"
  location: "China"
  synonym: "Japan Consortium for Glycobiology and Glycotechnology DataBase"
  institution: "Bioinformatics Research Group, Chinese Academy of Sciences, Beijing"
  prefixed: "false"
  test: "NONHSAT000001"
  probe: "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=NONHSAT000001"
  pattern: "^NONHSAT\\d{6}$"
  state: "54:Down"
  more: "http://www.bioinfo.org/NONCODEv4/"

oryzabase.gene:
  type: "scheme"
  name: "Oryzabase v4 Gene at National Institute of Genetics (Japan)"
  alias: 
  provider: 
  provider_id: "MIR:00100618"
  sort_score: "1"
  primary: "false"
  forward: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/${ac}"
  redirect: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$id"
  description: "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information."
  subject: "plant; gene"
  location: "Japan"
  synonym: "Japan Consortium for Glycobiology and Glycotechnology DataBase"
  institution: "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka"
  prefixed: "false"
  test: "117"
  probe: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/117"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/"

oryzabase.mutant:
  type: "scheme"
  name: "Oryzabase v4 Mutant at National Institute of Genetics (Japan)"
  alias: 
  provider: 
  provider_id: "MIR:00100619"
  sort_score: "1"
  primary: "false"
  forward: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/${ac}"
  redirect: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$id"
  description: "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information."
  subject: "plant; phenotype"
  location: "Japan"
  synonym: "Japan Consortium for Glycobiology and Glycotechnology DataBase"
  institution: "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka"
  prefixed: "false"
  test: "21393"
  probe: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/21393"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/"

oryzabase.strain:
  type: "scheme"
  name: "Oryzabase v4 Strain at National Institute of Genetics (Japan)"
  alias: 
  provider: 
  provider_id: "MIR:00100620"
  sort_score: "1"
  primary: "false"
  forward: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/${ac}"
  redirect: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$id"
  description: "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information."
  subject: "plant; strain"
  location: "Japan"
  synonym: "Japan Consortium for Glycobiology and Glycotechnology DataBase"
  institution: "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka"
  prefixed: "false"
  test: "1"
  probe: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/1"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/"

oryzabase.stage:
  type: "scheme"
  name: "Oryzabase v4 Stage at National Institute of Genetics (Japan)"
  alias: 
  provider: 
  provider_id: "MIR:00100621"
  sort_score: "1"
  primary: "false"
  forward: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/${ac}"
  redirect: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$id"
  description: "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information."
  subject: "phenotype; plant"
  location: "Japan"
  synonym: "Japan Consortium for Glycobiology and Glycotechnology DataBase"
  institution: "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka"
  prefixed: "false"
  test: "34"
  probe: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/34"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/"

otl:
  type: "scheme"
  name: "Oryza Tag Line at CIRAD-INRA-SUPAGRO-UMI"
  alias: 
  provider: 
  provider_id: "MIR:00100622"
  sort_score: "1"
  primary: "false"
  forward: "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=${ac}"
  redirect: "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$id"
  description: "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information."
  subject: "phenotype; plant"
  location: "France"
  synonym: "OTL"
  institution: "CIRAD-INRA-SUPAGRO-UMII, Biological Systems Department, Montpellier"
  prefixed: "false"
  test: "AADB12"
  probe: "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=AADB12"
  pattern: "^A[A-Z]+\\d+$"
  state: "95:Up"
  more: "http://oryzatagline.cirad.fr/"

genewiki:
  type: "scheme"
  name: "Gene Wiki through BioGPS"
  alias: 
  provider: 
  provider_id: "MIR:00100623"
  sort_score: "4"
  primary: "false"
  forward: "http://plugins.biogps.org/cgi-bin/wp.cgi?id=${ac}"
  redirect: "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$id"
  description: "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI."
  subject: "human; gene; encyclopedia"
  location: "USA"
  synonym: "OTL"
  institution: "Wikimedia Foundation, San Francisco, California"
  prefixed: "false"
  test: "1017"
  probe: "http://plugins.biogps.org/cgi-bin/wp.cgi?id=1017"
  pattern: "^\\d+$"
  state: "90:Up"
  more: "http://en.wikipedia.org/wiki/Gene_Wiki"

paxdb.organism:
  type: "scheme"
  name: "PaxDb v3 at University of Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100624"
  sort_score: "1"
  primary: "false"
  forward: "http://pax-db.org/#!species/${ac}"
  redirect: "http://pax-db.org/#!species/$id"
  description: "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species."
  subject: "genome; protein; expression"
  location: "Switzerland"
  synonym: "OTL"
  institution: "Institute of Molecular Life Sciences, University of Zurich, Zurich"
  prefixed: "false"
  test: "9606"
  probe: "http://pax-db.org/#!species/9606"
  pattern: "^\\d+$"
  state: "99:Probably up"
  more: "http://pax-db.org/"

paxdb.protein:
  type: "scheme"
  name: "PaxDb v3 at University of Zurich"
  alias: 
  provider: 
  provider_id: "MIR:00100625"
  sort_score: "1"
  primary: "false"
  forward: "http://pax-db.org/#!protein/${ac}"
  redirect: "http://pax-db.org/#!protein/$id"
  description: "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels."
  subject: "protein; expression"
  location: "Switzerland"
  synonym: "OTL"
  institution: "Institute of Molecular Life Sciences, University of Zurich, Zurich"
  prefixed: "false"
  test: "977869"
  probe: "http://pax-db.org/#!protein/977869"
  pattern: "^\\d+$"
  state: "99:Probably up"
  more: "http://pax-db.org/"

pdb.ligand:
  type: "scheme"
  name: "PDB Ligand at RCSB"
  alias: 
  provider: "rcsb"
  provider_id: "MIR:00100626"
  sort_score: "4"
  primary: "false"
  forward: "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=${ac}"
  redirect: "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$id"
  description: "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands."
  subject: "protein; structure"
  location: "USA"
  synonym: "OTL"
  institution: "Rutgers, The State University of New Jersey"
  prefixed: "false"
  test: "TRQ"
  probe: "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=TRQ"
  pattern: "^[A-Za-z0-9]+$"
  state: "50:Down"
  more: "http://www.pdb.org/"

rcsb/pdb.ligand:
  type: "synonym"
  for: "pdb.ligand"

z065/pdb.ligand:
  type: "scheme"
  name: "PDB Ligand at Protein Databank in Europe (PDBe)"
  alias: 
  provider: "z065"
  provider_id: "MIR:00100650"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/${ac}"
  redirect: "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$id"
  description: "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands."
  subject: "protein; structure"
  location: "UK"
  synonym: "OTL"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "TRQ"
  probe: "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/TRQ"
  pattern: "^[A-Za-z0-9]+$"
  state: "100:Up"
  more: "https://www.pdbe.org/"

merops.inhibitor:
  type: "scheme"
  name: "MEROPS Inhibitor at Sanger Institute"
  alias: 
  provider: 
  provider_id: "MIR:00100632"
  sort_score: "2"
  primary: "false"
  forward: "http://merops.sanger.ac.uk/cgi-bin/pepsum?id=${ac}"
  redirect: "http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$id"
  description: "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors."
  subject: "enzyme; protein; interaction"
  location: "UK"
  synonym: "OTL"
  institution: "Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge"
  prefixed: "false"
  test: "I31.952"
  probe: "http://merops.sanger.ac.uk/cgi-bin/pepsum?id=I31.952"
  pattern: "^I\\d{2}\\.\\d{3}$"
  state: "60:Down"
  more: "http://merops.sanger.ac.uk/index.htm"

adw:
  type: "scheme"
  name: "Animal Diversity Web at University of Michigan"
  alias: 
  provider: 
  provider_id: "MIR:00100633"
  sort_score: "4"
  primary: "false"
  forward: "https://animaldiversity.org/accounts/${ac}/"
  redirect: "https://animaldiversity.org/accounts/$id/"
  description: "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology."
  subject: "classification"
  location: "USA"
  synonym: "OTL"
  institution: "University of Michigan Museum of Zoology, Ann Arbor, Michigan"
  prefixed: "false"
  test: "Lycalopex_vetulus"
  probe: "https://animaldiversity.org/accounts/Lycalopex_vetulus/"
  pattern: "^[A-Z_a-z]+$"
  state: "86:Unknown"
  more: "https://animaldiversity.org/"

glida.gpcr:
  type: "scheme"
  name: "GLIDA GPCR at Kyoto University"
  alias: 
  provider: 
  provider_id: "MIR:00100634"
  sort_score: "1"
  primary: "false"
  forward: "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=${ac}"
  redirect: "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$id"
  description: "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors."
  subject: "chemical; interaction"
  location: "Japan"
  synonym: "GPCR-LIgand DAtabase GPCR"
  institution: "Department of Genomic Drug Discovery Science, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto"
  prefixed: "false"
  test: "ACM1_HUMAN"
  probe: "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=ACM1_HUMAN"
  pattern: "^[A-Z-_0-9]+$"
  state: "79:Down"
  more: "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/"

glida.ligand:
  type: "scheme"
  name: "GLIDA Ligand at Kyoto University"
  alias: 
  provider: 
  provider_id: "MIR:00100635"
  sort_score: "1"
  primary: "false"
  forward: "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=${ac}"
  redirect: "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$id"
  description: "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands."
  subject: "chemical; interaction"
  location: "Japan"
  synonym: "GPCR-LIgand DAtabase Ligand"
  institution: "Department of Genomic Drug Discovery Science, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto"
  prefixed: "false"
  test: "L000001"
  probe: "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=L000001"
  pattern: "^L\\d+$"
  state: "79:Down"
  more: "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/"

grsdb:
  type: "scheme"
  name: "GRSDB v2 at  Ramapo College of New Jersey"
  alias: 
  provider: 
  provider_id: "MIR:00100636"
  sort_score: "4"
  primary: "false"
  forward: "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=${ac}"
  redirect: "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$id"
  description: "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank."
  subject: "nucleotide; eukaryotic"
  location: "USA"
  synonym: "G-Rich Sequences DataBase"
  institution: "Bioinformatics Group, School of Theoretical and Applied Science, Ramapo College of New Jersey, Mahwah"
  prefixed: "false"
  test: "10142"
  probe: "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=10142"
  pattern: "^\\d+$"
  state: "95:Up"
  more: "http://bioinformatics.ramapo.edu/GRSDB2/"

fsnp:
  type: "scheme"
  name: "F-SNP at Queen's University (Canada)"
  alias: 
  provider: 
  provider_id: "MIR:00100637"
  sort_score: "1"
  primary: "false"
  forward: "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=${ac}"
  redirect: "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=$id"
  description: "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification."
  subject: "nucleotide"
  location: "Canada"
  synonym: "Functional Single Nucleotide Polymorphism"
  institution: "Computational Biology and Machine Learning Lab, School of Computing, Queen's University, Kingston, Ontario"
  prefixed: "false"
  test: "rs17852708"
  probe: "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=rs17852708"
  pattern: "^rs\\d+$"
  state: "62:Down"
  more: "http://compbio.cs.queensu.ca/F-SNP/"

hdr:
  type: "scheme"
  name: "Homeodomain Research at National Human Genome Research Institute (NIH)"
  alias: 
  provider: 
  provider_id: "MIR:00100638"
  sort_score: "4"
  primary: "false"
  forward: "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=${ac}"
  redirect: "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=$id"
  description: "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders."
  subject: "protein; interaction; domain"
  location: "USA"
  synonym: "Functional Single Nucleotide Polymorphism"
  institution: "Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland"
  prefixed: "false"
  test: "63"
  probe: "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=63"
  pattern: "^\\d+$"
  state: "67:Down"
  more: "http://research.nhgri.nih.gov/apps/homeodomain/web/"

norine:
  type: "scheme"
  name: "NORINE at Computer Science Laboratory of Lille"
  alias: 
  provider: 
  provider_id: "MIR:00100639"
  sort_score: "1"
  primary: "false"
  forward: "http://bioinfo.lifl.fr/norine/result.jsp?ID=${ac}"
  redirect: "http://bioinfo.lifl.fr/norine/result.jsp?ID=$id"
  description: "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings."
  subject: "protein; microbial; fungal"
  location: "France"
  synonym: "Functional Single Nucleotide Polymorphism"
  institution: "Computer Science Laboratory of Lille, INRIA and ProBioGEM, University of Sciences and Technologies of Lille, Lille"
  prefixed: "false"
  test: "NOR00681"
  probe: "http://bioinfo.lifl.fr/norine/result.jsp?ID=NOR00681"
  pattern: "^NOR\\d+$"
  state: "97:Up"
  more: "http://bioinfo.lifl.fr/norine/"

ordb:
  type: "scheme"
  name: "Olfactory Receptor Database at Yale University School of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100640"
  sort_score: "4"
  primary: "false"
  forward: "http://senselab.med.yale.edu/ORDB/Data/${ac}"
  redirect: "http://senselab.med.yale.edu/ORDB/Data/$id"
  description: "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs)."
  subject: "nucleotide; sequence"
  location: "USA"
  synonym: "OrDB"
  institution: "Center for Medical Informatics, Yale University School of Medicine, New Haven, Connecticut"
  prefixed: "false"
  test: "8497"
  probe: "http://senselab.med.yale.edu/ORDB/Data/8497"
  pattern: "^\\d+$"
  state: "92:Up"
  more: "http://senselab.med.yale.edu/OrDB/"

odor:
  type: "scheme"
  name: "Odor Molecules DataBase at Yale University School of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100641"
  sort_score: "4"
  primary: "false"
  forward: "http://senselab.med.yale.edu/OdorDB/Data/${ac}/?db=5"
  redirect: "http://senselab.med.yale.edu/OdorDB/Data/$id/?db=5"
  description: "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors"
  subject: "chemical"
  location: "USA"
  synonym: "OdorDB"
  institution: "Center for Medical Informatics, Yale University School of Medicine, New Haven, Connecticut"
  prefixed: "false"
  test: "74"
  probe: "http://senselab.med.yale.edu/OdorDB/Data/74/?db=5"
  pattern: "^\\d+$"
  state: "89:Up"
  more: "http://senselab.med.yale.edu/OdorDB"

p3db.protein:
  type: "scheme"
  name: "P3DB Protein at University of Missouri"
  alias: 
  provider: 
  provider_id: "MIR:00100642"
  sort_score: "4"
  primary: "false"
  forward: "http://www.p3db.org/protein.php?id=${ac}&amp;ref=0"
  redirect: "http://www.p3db.org/protein.php?id=$id&amp;ref=0"
  description: "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites."
  subject: "protein; plant"
  location: "USA"
  synonym: "OdorDB"
  institution: "Department of Computer Science, University of Missouri, Columbia, Missouri"
  prefixed: "false"
  test: "70"
  probe: "http://www.p3db.org/protein.php?id=70&amp;ref=0"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.p3db.org/"

p3db.site:
  type: "scheme"
  name: "P3DB Site at University of Missouri"
  alias: 
  provider: 
  provider_id: "MIR:00100643"
  sort_score: "4"
  primary: "false"
  forward: "http://www.p3db.org/phosphosite.php?id=${ac}&ref=0"
  redirect: "http://www.p3db.org/phosphosite.php?id=$id&ref=0"
  description: "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins."
  subject: "plant; protein"
  location: "USA"
  synonym: "OdorDB"
  institution: "Department of Computer Science, University of Missouri, Columbia, Missouri"
  prefixed: "false"
  test: "65"
  probe: "http://www.p3db.org/phosphosite.php?id=65&ref=0"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.p3db.org/"

topdb:
  type: "scheme"
  name: "TOPDB at Hungarian Academy of Sciences"
  alias: 
  provider: 
  provider_id: "MIR:00100644"
  sort_score: "1"
  primary: "false"
  forward: "http://topdb.enzim.hu/?m=show&id=${ac}"
  redirect: "http://topdb.enzim.hu/?m=show&id=$id"
  description: "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases."
  subject: "protein"
  location: "Hungary"
  synonym: "OdorDB"
  institution: "Institute of Enzymology, Hungarian Academy of Sciences, Budapest"
  prefixed: "false"
  test: "AP00378"
  probe: "http://topdb.enzim.hu/?m=show&id=AP00378"
  pattern: "^[A-Z0-9]+$"
  state: "100:Up"
  more: "http://topdb.enzim.hu/"

cattleqtldb:
  type: "scheme"
  name: "Animal QTL Cattle at Iowa State University"
  alias: 
  provider: 
  provider_id: "MIR:00100645"
  sort_score: "4"
  primary: "false"
  forward: "http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=${ac}"
  redirect: "http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=$id"
  description: "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs."
  subject: "phenotype; gene"
  location: "USA"
  synonym: "OdorDB"
  institution: "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa"
  prefixed: "false"
  test: "4685"
  probe: "http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=4685"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.animalgenome.org/cgi-bin/QTLdb/BT/index"

chickenqtldb:
  type: "scheme"
  name: "Animal QTL Chicken at Iowa State University"
  alias: 
  provider: 
  provider_id: "MIR:00100646"
  sort_score: "4"
  primary: "false"
  forward: "http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=${ac}"
  redirect: "http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=$id"
  description: "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs."
  subject: "phenotype; gene"
  location: "USA"
  synonym: "OdorDB"
  institution: "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa"
  prefixed: "false"
  test: "14362"
  probe: "http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=14362"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.animalgenome.org/cgi-bin/QTLdb/GG/index"

pigqtldb:
  type: "scheme"
  name: "Animal QTL Pig at Iowa State University"
  alias: 
  provider: 
  provider_id: "MIR:00100647"
  sort_score: "4"
  primary: "false"
  forward: "http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=${ac}"
  redirect: "http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=$id"
  description: "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs."
  subject: "phenotype; gene"
  location: "USA"
  synonym: "OdorDB"
  institution: "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa"
  prefixed: "false"
  test: "14"
  probe: "http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=14"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.animalgenome.org/cgi-bin/QTLdb/SS/index"

sheepqtldb:
  type: "scheme"
  name: "Animal QTL Sheep at Iowa State University"
  alias: 
  provider: 
  provider_id: "MIR:00100648"
  sort_score: "4"
  primary: "false"
  forward: "http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=${ac}"
  redirect: "http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$id"
  description: "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs."
  subject: "phenotype; gene"
  location: "USA"
  synonym: "OdorDB"
  institution: "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa"
  prefixed: "false"
  test: "19803"
  probe: "http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=19803"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.animalgenome.org/cgi-bin/QTLdb/OA/index"

gramene.growthstage:
  type: "scheme"
  name: "Gramene Growth Stage Ontology at Cold Spring Harbor"
  alias: 
  provider: 
  provider_id: "MIR:00100649"
  sort_score: "4"
  primary: "false"
  forward: "http://www.gramene.org/db/ontology/search?id=GRO:${ac}"
  redirect: "http://www.gramene.org/db/ontology/search?id=GRO:$id"
  description: "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene."
  subject: "ontology"
  location: "USA"
  synonym: "OdorDB"
  institution: "Cold Spring Harbor Laboratory, New York"
  prefixed: "true"
  test: "0007133"
  probe: "http://www.gramene.org/db/ontology/search?id=GRO:0007133"
  pattern: "^GRO\\:\\d+$"
  state: "99:Up"
  more: "http://www.gramene.org/"

mgnify.samp:
  type: "scheme"
  name: "MGnify Sample"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100656"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/metagenomics/samples/${ac}"
  redirect: "https://www.ebi.ac.uk/metagenomics/samples/$id"
  description: "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples."
  subject: "genome"
  location: "UK"
  synonym: "OdorDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "SRS086444"
  probe: "https://www.ebi.ac.uk/metagenomics/samples/SRS086444"
  pattern: "^[A-Z]+[0-9]+$"
  state: "92:Up"
  more: "https://www.ebi.ac.uk/metagenomics"

ebi/mgnify.samp:
  type: "synonym"
  for: "mgnify.samp"

ega.study:
  type: "scheme"
  name: "EGA Study at European Bioinformatics Institute"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100657"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/ega/studies/${ac}"
  redirect: "https://www.ebi.ac.uk/ega/studies/$id"
  description: "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets."
  subject: "phenotype; human; gene"
  location: "UK"
  synonym: "EGA Study"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "EGAS00000000001"
  probe: "https://www.ebi.ac.uk/ega/studies/EGAS00000000001"
  pattern: "^EGAS\\d{11}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ega/studies"

ebi/ega.study:
  type: "synonym"
  for: "ega.study"

omicsdi/ega.study:
  type: "scheme"
  name: "EGA Study through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100851"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/ega/${ac}"
  redirect: "https://www.omicsdi.org/dataset/ega/$id"
  description: "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets."
  subject: "phenotype; human; gene"
  location: "UK"
  synonym: "EGA Study"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "EGAS00000000001"
  probe: "https://www.omicsdi.org/dataset/ega/EGAS00000000001"
  pattern: "^EGAS\\d{11}$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

ega.dataset:
  type: "scheme"
  name: "EGA Dataset at European Bioinformatics Institute"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100658"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/ega/datasets/${ac}"
  redirect: "https://www.ebi.ac.uk/ega/datasets/$id"
  description: "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'."
  subject: "phenotype; gene; human"
  location: "UK"
  synonym: "EGA Dataset"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "EGAD00000000001"
  probe: "https://www.ebi.ac.uk/ega/datasets/EGAD00000000001"
  pattern: "^EGAD\\d{11}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ega/dataset"

ebi/ega.dataset:
  type: "synonym"
  for: "ega.dataset"

omicsdi/ega.dataset:
  type: "scheme"
  name: "EGA Dataset through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100852"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/ega/${ac}"
  redirect: "https://www.omicsdi.org/dataset/ega/$id"
  description: "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'."
  subject: "phenotype; gene; human"
  location: "UK"
  synonym: "EGA Dataset"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "EGAD00000000001"
  probe: "https://www.omicsdi.org/dataset/ega/EGAD00000000001"
  pattern: "^EGAD\\d{11}$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

px:
  type: "scheme"
  name: "ProteomeXchange at Seattle"
  alias: 
  provider: 
  provider_id: "MIR:00100660"
  sort_score: "4"
  primary: "false"
  forward: "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=${ac}"
  redirect: "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$id"
  description: "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination."
  subject: "mass spectrometry; protein"
  location: "USA"
  synonym: "EGA Dataset"
  institution: "Institute for Systems Biology, Seattle, WA, USA"
  prefixed: "false"
  test: "PXD000500"
  probe: "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000500"
  pattern: "^(R)?PXD\\d{6}$"
  state: "100:Up"
  more: "http://www.proteomexchange.org/"

biomodels.vocabulary:
  type: "scheme"
  name: "Vocabulary via BioModels.net"
  alias: 
  provider: 
  provider_id: "MIR:00100661"
  sort_score: "2"
  primary: "false"
  forward: "http://biomodels.net/rdf/vocabulary.rdf#${ac}"
  redirect: "http://biomodels.net/rdf/vocabulary.rdf#$id"
  description: "Vocabulary used in the RDF representation of SBML models."
  subject: 
  location: "UK"
  synonym: "EGA Dataset"
  institution: "BioModels.net"
  prefixed: "false"
  test: "rateRule"
  probe: "http://biomodels.net/rdf/vocabulary.rdf#rateRule"
  pattern: "^[A-Za-z]+$"
  state: "100:Up"
  more: "http://biomodels.net/rdf/vocabulary.rdf"

pride.project:
  type: "scheme"
  name: "PRIDE Project at EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100662"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/pride/archive/projects/${ac}"
  redirect: "https://www.ebi.ac.uk/pride/archive/projects/$id"
  description: "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects."
  subject: "protein"
  location: "UK"
  synonym: "EGA Dataset"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "PXD000440"
  probe: "https://www.ebi.ac.uk/pride/archive/projects/PXD000440"
  pattern: "^P(X|R)D\\d{6}$"
  state: "98:Up"
  more: "https://www.ebi.ac.uk/pride/"

ebi/pride.project:
  type: "synonym"
  for: "pride.project"

omicsdi/pride.project:
  type: "scheme"
  name: "PRIDE Project through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100858"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/pride/${ac}"
  redirect: "https://www.omicsdi.org/dataset/pride/$id"
  description: "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects."
  subject: "protein"
  location: "UK"
  synonym: "EGA Dataset"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "PXD000440"
  probe: "https://www.omicsdi.org/dataset/pride/PXD000440"
  pattern: "^P(X|R)D\\d{6}$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

antibodyregistry:
  type: "scheme"
  name: "Antibody Registry at University of California"
  alias: 
  provider: 
  provider_id: "MIR:00100664"
  sort_score: "4"
  primary: "false"
  forward: "http://antibodyregistry.org/AB_${ac}"
  redirect: "http://antibodyregistry.org/AB_$id"
  description: "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information."
  subject: "registry; immunogenetics"
  location: "USA"
  synonym: "EGA Dataset"
  institution: "Neuroscience Information Framework, University of California, San Diego,  California"
  prefixed: "false"
  test: "493771"
  probe: "http://antibodyregistry.org/AB_493771"
  pattern: "^\\d{6}$"
  state: "98:Up"
  more: "http://antibodyregistry.org/"

mamo:
  type: "scheme"
  name: "MAMO through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100665"
  sort_score: "4"
  primary: "false"
  forward: "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/${ac}"
  redirect: "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/$id"
  description: "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features."
  subject: 
  location: "USA"
  synonym: "MAMO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "MAMO_0000026"
  probe: "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_0000026"
  pattern: "^MAMO_\\d{7}$"
  state: "97:Probably up"
  more: "http://bioportal.bioontology.org/ontologies/MAMO"

bptl/mamo:
  type: "synonym"
  for: "mamo"

ols/mamo:
  type: "scheme"
  name: "MaMO through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100758"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?short_form=${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?short_form=$id"
  description: "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features."
  subject: 
  location: "UK"
  synonym: "MAMO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "MAMO_0000026"
  probe: "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?short_form=MAMO_0000026"
  pattern: "^MAMO_\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/mamo"

eo:
  type: "scheme"
  name: "Plant Environment Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100668"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/PECO/EO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/PECO/EO:$id"
  description: "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies."
  subject: "plant; controlled vocabulary"
  location: "USA"
  synonym: "Plant Environment Conditions"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0007404"
  probe: "http://purl.bioontology.org/ontology/PECO/EO:0007404"
  pattern: "^(P)?EO\\:\\d{7}$"
  state: "64:Down"
  more: "http://bioportal.bioontology.org/ontologies/PECO"

bptl/eo:
  type: "synonym"
  for: "eo"

z066/eo:
  type: "scheme"
  name: "Plant Environment Ontology through Gramene"
  alias: 
  provider: "z066"
  provider_id: "MIR:00100667"
  sort_score: "4"
  primary: "false"
  forward: "http://archive.gramene.org/db/ontology/search?query=EO:${ac}"
  redirect: "http://archive.gramene.org/db/ontology/search?query=EO:$id"
  description: "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies."
  subject: "plant; controlled vocabulary"
  location: "USA"
  synonym: "Plant Environment Conditions"
  institution: "Cold Spring Harbor Laboratory, New York"
  prefixed: "true"
  test: "0007404"
  probe: "http://archive.gramene.org/db/ontology/search?query=EO:0007404"
  pattern: "^(P)?EO\\:\\d{7}$"
  state: "98:Up"
  more: "http://archive.gramene.org/db/ontology/search_term?id=EO:0007359"

ols/eo:
  type: "scheme"
  name: "Plant Environment Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100669"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/eo/terms?obo_id=EO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/eo/terms?obo_id=EO:$id"
  description: "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies."
  subject: "plant; controlled vocabulary"
  location: "UK"
  synonym: "Plant Environment Conditions"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0007404"
  probe: "https://www.ebi.ac.uk/ols/ontologies/eo/terms?obo_id=EO:0007404"
  pattern: "^(P)?EO\\:\\d{7}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/eo"

idot:
  type: "scheme"
  name: "IdoT via biomodels.net"
  alias: 
  provider: 
  provider_id: "MIR:00100670"
  sort_score: "2"
  primary: "false"
  forward: "https://biomodels.net/vocab/idot.rdf#${ac}"
  redirect: "https://biomodels.net/vocab/idot.rdf#$id"
  description: "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets."
  subject: "schema.org"
  location: "UK"
  synonym: "IdoT"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "identifierPattern"
  probe: "https://biomodels.net/vocab/idot.rdf#identifierPattern"
  pattern: "^[A-Za-z]+$"
  state: "79:Down"
  more: "https://identifiers.org/"

hgnc.family:
  type: "scheme"
  name: "HGNC Family at HUGO Genome Nomenclature Committee"
  alias: 
  provider: 
  provider_id: "MIR:00100671"
  sort_score: "2"
  primary: "false"
  forward: "https://www.genenames.org/genefamilies/${ac}"
  redirect: "https://www.genenames.org/genefamilies/$id"
  description: "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides symbols for both structural and functional gene families. This collection refers to records using the HGNC family symbol."
  subject: "schema.org; human; classification; gene"
  location: "UK"
  synonym: "IdoT"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "PADI"
  probe: "https://www.genenames.org/genefamilies/PADI"
  pattern: "^[A-Z0-9-]+(#[A-Z0-9-]+)?$"
  state: "84:Down"
  more: "https://www.genenames.org/"

yeastintron:
  type: "scheme"
  name: "Yeast Intron Database version 4.3 at Baskin School of Engineering"
  alias: 
  provider: 
  provider_id: "MIR:00100673"
  sort_score: "4"
  primary: "false"
  forward: "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=${ac}"
  redirect: "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=$id"
  description: "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]."
  subject: "eukaryotic; DNA; sequence"
  location: "USA"
  synonym: "IdoT"
  institution: "Baskin School of Engineering, Center for Molecular Biology of RNA, University of California, Santa Cruz, California"
  prefixed: "false"
  test: "SNR17A"
  probe: "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=SNR17A"
  pattern: "^[A-Z0-9]+$"
  state: "99:Up"
  more: "http://intron.ucsc.edu/yeast4.3/"

ardb:
  type: "scheme"
  name: "ARDB at University of Maryland"
  alias: 
  provider: 
  provider_id: "MIR:00100678"
  sort_score: "4"
  primary: "false"
  forward: "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&amp;field=ni&amp;term=${ac}"
  redirect: "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&amp;field=ni&amp;term=$id"
  description: "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes."
  subject: "drug; gene"
  location: "USA"
  synonym: "ARDB"
  institution: "Center for Bioinformatics and Computational Biology, University of Maryland, Maryland"
  prefixed: "false"
  test: "CAE46076"
  probe: "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&amp;field=ni&amp;term=CAE46076"
  pattern: "^[A-Z_]{3}[0-9]{4,}$"
  state: "91:Down"
  more: "http://ardb.cbcb.umd.edu/"

proteomicsdb.protein:
  type: "scheme"
  name: "Proteomics DB Protein at Center for Integrated Protein Science"
  alias: 
  provider: 
  provider_id: "MIR:00100680"
  sort_score: "1"
  primary: "false"
  forward: "https://www.proteomicsdb.org/#human/proteinDetails/${ac}/summary"
  redirect: "https://www.proteomicsdb.org/#human/proteinDetails/$id/summary"
  description: "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information  from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins."
  subject: "human; protein"
  location: "Germany"
  synonym: "ARDB"
  institution: "Center for Integrated Protein Science, Munich,"
  prefixed: "false"
  test: "53504"
  probe: "https://www.proteomicsdb.org/#human/proteinDetails/53504/summary"
  pattern: "^\\d+$"
  state: "98:Probably up"
  more: "https://www.proteomicsdb.org/#human"

proteomicsdb.peptide:
  type: "scheme"
  name: "Proteomics DB Peptide at Center for Integrated Protein Science"
  alias: 
  provider: 
  provider_id: "MIR:00100681"
  sort_score: "1"
  primary: "false"
  forward: "https://www.proteomicsdb.org/#human/proteinDetails/${ac}/peptides/"
  redirect: "https://www.proteomicsdb.org/#human/proteinDetails/$id/peptides/"
  description: "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein."
  subject: "human; protein"
  location: "Germany"
  synonym: "ARDB"
  institution: "Center for Integrated Protein Science, Munich"
  prefixed: "false"
  test: "53504"
  probe: "https://www.proteomicsdb.org/#human/proteinDetails/53504/peptides/"
  pattern: "^\\d+$"
  state: "98:Probably up"
  more: "https://www.proteomicsdb.org/#peptideSearch"

hpm.protein:
  type: "scheme"
  name: "Human Proteome Map Protein at Institute of Bioinformatics (Bangalore)"
  alias: 
  provider: 
  provider_id: "MIR:00100682"
  sort_score: "1"
  primary: "false"
  forward: "http://www.humanproteomemap.org/protein.php?hpm_id=${ac}"
  redirect: "http://www.humanproteomemap.org/protein.php?hpm_id=$id"
  description: "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins."
  subject: "human; protein"
  location: "India"
  synonym: "HPM"
  institution: "Institute of Bioinformatics, International Tech Park, Bangalore"
  prefixed: "false"
  test: "1968"
  probe: "http://www.humanproteomemap.org/protein.php?hpm_id=1968"
  pattern: "^\\d+$"
  state: "96:Up"
  more: "http://www.humanproteomemap.org/index.php"

hpm.peptide:
  type: "scheme"
  name: "Human Proteome Map Peptide at Institute of Bioinformatics (Bangalore)"
  alias: 
  provider: 
  provider_id: "MIR:00100683"
  sort_score: "1"
  primary: "false"
  forward: "http://www.humanproteomemap.org/spectrum.php?pep_id=${ac}"
  redirect: "http://www.humanproteomemap.org/spectrum.php?pep_id=$id"
  description: "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra."
  subject: "human; protein"
  location: "India"
  synonym: "HPM"
  institution: "Institute of Bioinformatics, International Tech Park, Bangalore"
  prefixed: "false"
  test: "9606117"
  probe: "http://www.humanproteomemap.org/spectrum.php?pep_id=9606117"
  pattern: "^\\d+$"
  state: "98:Up"
  more: "http://www.humanproteomemap.org/index.php"

drugbankv4.target:
  type: "scheme"
  name: "DrugBank Target information version 4"
  alias: 
  provider: 
  provider_id: "MIR:00100687"
  sort_score: "1"
  primary: "false"
  forward: "http://www.drugbank.ca/biodb/bio_entities/${ac}"
  redirect: "http://www.drugbank.ca/biodb/bio_entities/$id"
  description: "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database."
  subject: "interaction; chemical; protein"
  location: "Canada"
  synonym: "HPM"
  institution: "Departments of Computing Science, Biological Sciences, University of Alberta"
  prefixed: "false"
  test: "BE0000048"
  probe: "http://www.drugbank.ca/biodb/bio_entities/BE0000048"
  pattern: "^BE\\d{7}$"
  state: "100:Up"
  more: "http://www.drugbank.ca/targets"

zinc:
  type: "scheme"
  name: "ZINC at University of California (San Francisco)"
  alias: 
  provider: 
  provider_id: "MIR:00100688"
  sort_score: "6"
  primary: "true"
  forward: "http://zinc15.docking.org/substances/${ac}"
  redirect: "http://zinc15.docking.org/substances/$id"
  description: "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number."
  subject: "structure; chemical"
  location: "USA"
  synonym: "HPM"
  institution: "Shoichet Laboratory, Department of Pharmaceutical Chemistry, University of California, San Francisco"
  prefixed: "false"
  test: "ZINC1084"
  probe: "http://zinc15.docking.org/substances/ZINC1084"
  pattern: "^(ZINC)?\\d+$"
  state: "99:Up"
  more: "http://zinc15.docking.org/"

foodb.compound:
  type: "scheme"
  name: "FooDB database of food additives at University of Alberta"
  alias: 
  provider: 
  provider_id: "MIR:00100689"
  sort_score: "1"
  primary: "false"
  forward: "http://foodb.ca/compounds/${ac}"
  redirect: "http://foodb.ca/compounds/$id"
  description: "FooDB is resource on food and its constituent compounds. It includes data on the compound&#x2019;s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds."
  subject: "structure; chemical"
  location: "Canada"
  synonym: "HPM"
  institution: "University of Alberta, Edmonton, AB"
  prefixed: "false"
  test: "FDB002100"
  probe: "http://foodb.ca/compounds/FDB002100"
  pattern: "^FDB\\d+$"
  state: "97:Up"
  more: "http://foodb.ca/foods"

unii:
  type: "scheme"
  name: "UNII at U.S. Food and Drug Administration"
  alias: 
  provider: 
  provider_id: "MIR:00100690"
  sort_score: "4"
  primary: "false"
  forward: "http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=${ac}"
  redirect: "http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=$id"
  description: "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance&#x2019;s molecular structure and/or descriptive information."
  subject: "chemical; drug"
  location: "USA"
  synonym: "Substance Registration System; Unique ingredient identifier"
  institution: "U.S. Food and Drug Administration, Maryland"
  prefixed: "false"
  test: "3G6A5W338E"
  probe: "http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=3G6A5W338E"
  pattern: "^[A-Z0-9]+$"
  state: "71:Down"
  more: "http://fdasis.nlm.nih.gov/srs/"

orphanet.ordo:
  type: "scheme"
  name: "ORDO via OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100705"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=$id"
  description: "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)."
  subject: "ontology; disease"
  location: "UK"
  synonym: "ORDO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "Orphanet_C023"
  probe: "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=Orphanet_C023"
  pattern: "^Orphanet(_|:)C?\\d+$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/ordo"

ols/orphanet.ordo:
  type: "synonym"
  for: "orphanet.ordo"

psipar:
  type: "scheme"
  name: "Protein Affinity Reagents through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100709"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ontology-lookup/?termId=${ac}"
  redirect: "https://www.ebi.ac.uk/ontology-lookup/?termId=$id"
  description: "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms."
  subject: 
  location: "UK"
  synonym: "PSI-PAR"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "PAR:0116"
  probe: "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:0116"
  pattern: "^PAR:\\d+$"
  state: "35:Down"
  more: "https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PAR"

ols/psipar:
  type: "synonym"
  for: "psipar"

clinvar.record:
  type: "scheme"
  name: "ClinVar Record at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100710"
  sort_score: "5"
  primary: "false"
  forward: "http://www.ncbi.nlm.nih.gov/clinvar/${ac}/"
  redirect: "http://www.ncbi.nlm.nih.gov/clinvar/$id/"
  description: "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of  the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession."
  subject: "gene; human; phenotype"
  location: "USA"
  synonym: "PSI-PAR"
  institution: "National Center for Biotechnology Information (NCBI), NIH, Maryland"
  prefixed: "false"
  test: "RCV000033555.3"
  probe: "http://www.ncbi.nlm.nih.gov/clinvar/RCV000033555.3/"
  pattern: "^RCV\\d+(\\.\\d+)?$"
  state: "100:Up"
  more: "http://www.ncbi.nlm.nih.gov/clinvar/"

ncbi/clinvar.record:
  type: "synonym"
  for: "clinvar.record"

mgnify.proj:
  type: "scheme"
  name: "MGnify Project"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100711"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/metagenomics/projects/${ac}"
  redirect: "https://www.ebi.ac.uk/metagenomics/projects/$id"
  description: "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis."
  subject: "genome"
  location: "UK"
  synonym: "PSI-PAR"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "ERP004492"
  probe: "https://www.ebi.ac.uk/metagenomics/projects/ERP004492"
  pattern: "^[A-Z]+[0-9]+$"
  state: "96:Up"
  more: "https://www.ebi.ac.uk/metagenomics"

ebi/mgnify.proj:
  type: "synonym"
  for: "mgnify.proj"

euclinicaltrials:
  type: "scheme"
  name: "EU Clinical Trials at  European Medicines Agency"
  alias: 
  provider: 
  provider_id: "MIR:00100712"
  sort_score: "2"
  primary: "false"
  forward: "https://www.clinicaltrialsregister.eu/ctr-search/search?query=${ac}"
  redirect: "https://www.clinicaltrialsregister.eu/ctr-search/search?query=$id"
  description: "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004. It also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population."
  subject: "pharmacogenomics; disease; human; disorder"
  location: "UK"
  synonym: "EU Clinical Trials Register"
  institution: "European Medicines Agency, London"
  prefixed: "false"
  test: "2008-005144-16"
  probe: "https://www.clinicaltrialsregister.eu/ctr-search/search?query=2008-005144-16"
  pattern: "^\\d{4}\\-\\d{6}\\-\\d{2}$"
  state: "99:Up"
  more: "https://www.clinicaltrialsregister.eu/"

google.patent:
  type: "scheme"
  name: "Google Patents at Google"
  alias: 
  provider: 
  provider_id: "MIR:00100714"
  sort_score: "1"
  primary: "false"
  forward: "https://www.google.com/patents/${ac}"
  redirect: "https://www.google.com/patents/$id"
  description: "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date."
  subject: "registry"
  location: 
  synonym: "EU Clinical Trials Register"
  institution: "Google Incorporated"
  prefixed: "false"
  test: "US4145692"
  probe: "https://www.google.com/patents/US4145692"
  pattern: "^[A-Z]{2}\\d+([A-Z])?$"
  state: "100:Up"
  more: "https://www.google.com/patents/"

uspto:
  type: "scheme"
  name: "USPTO patents at USPTO"
  alias: 
  provider: 
  provider_id: "MIR:00100715"
  sort_score: "4"
  primary: "false"
  forward: "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/${ac}"
  redirect: "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$id"
  description: "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement."
  subject: "registry"
  location: "USA"
  synonym: "United States Patent and Trademark Office"
  institution: "United States Patent and Trademark Office"
  prefixed: "false"
  test: "4145692"
  probe: "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/4145692"
  pattern: "^(D|PP|R|T|H|X|AI)?\\d+$"
  state: "100:Up"
  more: "http://patft.uspto.gov/netahtml/PTO/index.html"

cpc:
  type: "scheme"
  name: "Cooperative Patent Classification at Espace"
  alias: 
  provider: 
  provider_id: "MIR:00100716"
  sort_score: "1"
  primary: "false"
  forward: "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=${ac}"
  redirect: "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$id"
  description: "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013."
  subject: "classification"
  location: 
  synonym: "CPC"
  institution: "Espace, European Patent Office"
  prefixed: "false"
  test: "A01M1/026"
  probe: "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=A01M1/026"
  pattern: "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$"
  state: "84:Unknown"
  more: "https://worldwide.espacenet.com/classification"

gwascentral.study:
  type: "scheme"
  name: "GWAS Central Study at University of Leicester"
  alias: 
  provider: 
  provider_id: "MIR:00100717"
  sort_score: "2"
  primary: "false"
  forward: "https://www.gwascentral.org/study/${ac}"
  redirect: "https://www.gwascentral.org/study/$id"
  description: "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study."
  subject: "human; genome; phenotype"
  location: "UK"
  synonym: "CPC"
  institution: "Department of Genetics, University of Leicester, Leicester"
  prefixed: "false"
  test: "HGVST1828"
  probe: "https://www.gwascentral.org/study/HGVST1828"
  pattern: "^HGVST\\d+$"
  state: "91:Unknown"
  more: "https://www.gwascentral.org/studies"

exac.variant:
  type: "scheme"
  name: "ExAC Variant at Exome Aggregation Consortium"
  alias: 
  provider: 
  provider_id: "MIR:00100718"
  sort_score: "4"
  primary: "false"
  forward: "http://exac.broadinstitute.org/variant/${ac}"
  redirect: "http://exac.broadinstitute.org/variant/$id"
  description: "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information."
  subject: "phenotype; genome; human"
  location: "USA"
  synonym: "CPC"
  institution: "Exome Aggregation Consortium (ExAC), Cambridge, Massachusetts"
  prefixed: "false"
  test: "22-46615880-T-C"
  probe: "http://exac.broadinstitute.org/variant/22-46615880-T-C"
  pattern: "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$"
  state: "100:Up"
  more: "http://exac.broadinstitute.org/"

gwascentral.marker:
  type: "scheme"
  name: "GWAS Central Marker at University of Leicester"
  alias: 
  provider: 
  provider_id: "MIR:00100719"
  sort_score: "2"
  primary: "false"
  forward: "https://www.gwascentral.org/marker/${ac}"
  redirect: "https://www.gwascentral.org/marker/$id"
  description: "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker."
  subject: "genome; phenotype; human"
  location: "UK"
  synonym: "CPC"
  institution: "Department of Genetics, University of Leicester, Leicester"
  prefixed: "false"
  test: "HGVM15354"
  probe: "https://www.gwascentral.org/marker/HGVM15354"
  pattern: "^HGVM\\d+$"
  state: "91:Unknown"
  more: "https://www.gwascentral.org/markers/"

gwascentral.phenotype:
  type: "scheme"
  name: "GWAS Central Phenotype at University of Leicester"
  alias: 
  provider: 
  provider_id: "MIR:00100720"
  sort_score: "2"
  primary: "false"
  forward: "https://www.gwascentral.org/phenotype/${ac}"
  redirect: "https://www.gwascentral.org/phenotype/$id"
  description: "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype."
  subject: "human; genome; phenotype"
  location: "UK"
  synonym: "CPC"
  institution: "Department of Genetics, University of Leicester, Leicester"
  prefixed: "false"
  test: "HGVPM623"
  probe: "https://www.gwascentral.org/phenotype/HGVPM623"
  pattern: "^HGVP\\d+$"
  state: "91:Unknown"
  more: "https://www.gwascentral.org/phenotypes"

lincs.cell:
  type: "scheme"
  name: "LINCS Portal"
  alias: 
  provider: 
  provider_id: "MIR:00100721"
  sort_score: "4"
  primary: "false"
  forward: "http://lincsportal.ccs.miami.edu/cells/#/view/${ac}"
  redirect: "http://lincsportal.ccs.miami.edu/cells/#/view/$id"
  description: "The Library of Network-Based Cellular Signatures (LINCS) Program aims to  create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease."
  subject: "human"
  location: "USA"
  synonym: "CPC"
  institution: "University of Miami, BD2K-LINCS DCIC"
  prefixed: "false"
  test: "LCL-2085"
  probe: "http://lincsportal.ccs.miami.edu/cells/#/view/LCL-2085"
  pattern: "(^LCL-\\d+$)|(^LDC-\\d+$)|(^ES-\\d+$)|(^LSC-\\d+$)|(^LPC-\\d+$)"
  state: "100:Probably up"
  more: "http://lincsportal.ccs.miami.edu/cells/"

lincs.protein:
  type: "scheme"
  name: "LINCS Protein at Harvard Medical School"
  alias: 
  provider: 
  provider_id: "MIR:00100722"
  sort_score: "4"
  primary: "false"
  forward: "http://lincs.hms.harvard.edu/db/proteins/${ac}/"
  redirect: "http://lincs.hms.harvard.edu/db/proteins/$id/"
  description: "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins."
  subject: "human"
  location: "USA"
  synonym: "CPC"
  institution: "Harvard Medical School, Boston, Massachusetts"
  prefixed: "false"
  test: "200282"
  probe: "http://lincs.hms.harvard.edu/db/proteins/200282/"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://lincs.hms.harvard.edu/db/proteins/"

lincs.smallmolecule:
  type: "scheme"
  name: "LINCS Portal"
  alias: 
  provider: 
  provider_id: "MIR:00100723"
  sort_score: "4"
  primary: "false"
  forward: "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/${ac}"
  redirect: "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$id"
  description: "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC)."
  subject: "human"
  location: "USA"
  synonym: "CPC"
  institution: "University  of Miami, BD2K-LINCS DCIC, USA"
  prefixed: "false"
  test: "LSM-6306"
  probe: "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/LSM-6306"
  pattern: "^LSM-\\d+$"
  state: "100:Probably up"
  more: "http://lincsportal.ccs.miami.edu/SmallMolecules/"

exac.transcript:
  type: "scheme"
  name: "ExAC Transcript at Exome Aggregation Consortium"
  alias: 
  provider: 
  provider_id: "MIR:00100724"
  sort_score: "4"
  primary: "false"
  forward: "http://exac.broadinstitute.org/transcript/${ac}"
  redirect: "http://exac.broadinstitute.org/transcript/$id"
  description: "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information."
  subject: "phenotype; genome; human"
  location: "USA"
  synonym: "CPC"
  institution: "Exome Aggregation Consortium (ExAC), Cambridge, Massachusetts"
  prefixed: "false"
  test: "ENST00000407236"
  probe: "http://exac.broadinstitute.org/transcript/ENST00000407236"
  pattern: "^ENST\\d{11}$"
  state: "100:Up"
  more: "http://exac.broadinstitute.org/"

exac.gene:
  type: "scheme"
  name: "ExAC Gene at Exome Aggregation Consortium"
  alias: 
  provider: 
  provider_id: "MIR:00100725"
  sort_score: "4"
  primary: "false"
  forward: "http://exac.broadinstitute.org/gene/${ac}"
  redirect: "http://exac.broadinstitute.org/gene/$id"
  description: "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information."
  subject: "phenotype; human; genome"
  location: "USA"
  synonym: "CPC"
  institution: "Exome Aggregation Consortium (ExAC), Cambridge, Massachusetts"
  prefixed: "false"
  test: "ENSG00000169174"
  probe: "http://exac.broadinstitute.org/gene/ENSG00000169174"
  pattern: "^ENSG\\d{11}$"
  state: "100:Up"
  more: "http://exac.broadinstitute.org/"

wikidata:
  type: "scheme"
  name: "Wikidata at Wikimedia Foundation"
  alias: 
  provider: 
  provider_id: "MIR:00100726"
  sort_score: "4"
  primary: "false"
  forward: "https://www.wikidata.org/wiki/${ac}"
  redirect: "https://www.wikidata.org/wiki/$id"
  description: "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic."
  subject: "encyclopedia"
  location: "USA"
  synonym: "CPC"
  institution: "Wikimedia Foundation, San Francisco, California"
  prefixed: "false"
  test: "Q2207226"
  probe: "https://www.wikidata.org/wiki/Q2207226"
  pattern: "^Q\\d+$"
  state: "87:Up"
  more: "https://www.wikidata.org/"

swisslipid:
  type: "scheme"
  name: "SwissLipids at Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100727"
  sort_score: "1"
  primary: "false"
  forward: "http://www.swisslipids.org/#/entity/SLM:${ac}/"
  redirect: "http://www.swisslipids.org/#/entity/SLM:$id/"
  description: "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions."
  subject: "lipid; metabolite"
  location: "Switzerland"
  synonym: "CPC"
  institution: "Swiss Institute of Bioinformatics, Basel"
  prefixed: "true"
  test: "000048885"
  probe: "http://www.swisslipids.org/#/entity/SLM:000048885/"
  pattern: "^SLM:\\d+$"
  state: "100:Probably up"
  more: "http://www.swisslipids.org/#/"

unipathway.compound:
  type: "scheme"
  name: "UniPathway Compound at Swiss Institute of Bioinformatics (SIB)"
  alias: 
  provider: 
  provider_id: "MIR:00100728"
  sort_score: "1"
  primary: "false"
  forward: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=${ac}"
  redirect: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$id"
  description: "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds."
  subject: "metabolite; structure; chemical"
  location: "Switzerland"
  synonym: "CPC"
  institution: "Swiss Institute of Bioinformatics (SIB) and French National Institute for Research in Computer Science and Control"
  prefixed: "false"
  test: "UPC04349"
  probe: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=UPC04349"
  pattern: "^UPC\\d{5}$"
  state: "20:Down"
  more: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway"

seed:
  type: "scheme"
  name: "SEED Subsystem at Argonne National Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100729"
  sort_score: "4"
  primary: "false"
  forward: "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=${ac}"
  redirect: "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$id"
  description: "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."
  subject: "pathway"
  location: "USA"
  synonym: "CPC"
  institution: "Argonne National Laboratory, University of Chicago, Argonne, Illinois"
  prefixed: "false"
  test: "Biotin_biosynthesis"
  probe: "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=Biotin_biosynthesis"
  pattern: "^\\w+$"
  state: "22:Down"
  more: "http://seed-viewer.theseed.org/seedviewer.cgi"

seed.compound:
  type: "scheme"
  name: "SEED Compound at Argonne National Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100730"
  sort_score: "4"
  primary: "false"
  forward: "http://modelseed.org/biochem/compounds/${ac}"
  redirect: "http://modelseed.org/biochem/compounds/$id"
  description: "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."
  subject: "chemical; metabolite; structure"
  location: "USA"
  synonym: "CPC"
  institution: "Argonne National Laboratory, University of Chicago, Argonne, Illinois"
  prefixed: "false"
  test: "cpd15380"
  probe: "http://modelseed.org/biochem/compounds/cpd15380"
  pattern: "^cpd\\d+$"
  state: "82:Probably up"
  more: "http://modelseed.org/"

bigg.model:
  type: "scheme"
  name: "BiGG Model at University of California"
  alias: 
  provider: 
  provider_id: "MIR:00100731"
  sort_score: "4"
  primary: "false"
  forward: "http://bigg.ucsd.edu/models/${ac}"
  redirect: "http://bigg.ucsd.edu/models/$id"
  description: "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models."
  subject: "model"
  location: "USA"
  synonym: "CPC"
  institution: "Systems Biology Research Group at the University of California, San Diego"
  prefixed: "false"
  test: "iECABU_c1320"
  probe: "http://bigg.ucsd.edu/models/iECABU_c1320"
  pattern: "^[a-z_A-Z0-9]+$"
  state: "100:Up"
  more: "http://bigg.ucsd.edu/models"

bigg.compartment:
  type: "scheme"
  name: "BiGG Compartment at University of California"
  alias: 
  provider: 
  provider_id: "MIR:00100732"
  sort_score: "4"
  primary: "false"
  forward: "http://bigg.ucsd.edu/compartments/${ac}"
  redirect: "http://bigg.ucsd.edu/compartments/$id"
  description: "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments."
  subject: "model"
  location: "USA"
  synonym: "CPC"
  institution: "Systems Biology Research Group at the University of California, San Diego"
  prefixed: "false"
  test: "c"
  probe: "http://bigg.ucsd.edu/compartments/c"
  pattern: "^[a-z_A-Z]+$"
  state: "100:Up"
  more: "http://bigg.ucsd.edu/compartments/"

bigg.metabolite:
  type: "scheme"
  name: "BiGG Metabolite at University of Cakifornia"
  alias: 
  provider: 
  provider_id: "MIR:00100733"
  sort_score: "4"
  primary: "false"
  forward: "http://bigg.ucsd.edu/models/universal/metabolites/${ac}"
  redirect: "http://bigg.ucsd.edu/models/universal/metabolites/$id"
  description: "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes."
  subject: "model"
  location: "USA"
  synonym: "CPC"
  institution: "Systems Biology Research Group at the University of California, San Diego"
  prefixed: "false"
  test: "12dgr161"
  probe: "http://bigg.ucsd.edu/models/universal/metabolites/12dgr161"
  pattern: "^[a-z_A-Z0-9]+$"
  state: "100:Up"
  more: "http://bigg.ucsd.edu/universal/metabolites"

bigg.reaction:
  type: "scheme"
  name: "BiGG Reaction at University of California"
  alias: 
  provider: 
  provider_id: "MIR:00100734"
  sort_score: "4"
  primary: "false"
  forward: "http://bigg.ucsd.edu/models/universal/reactions/${ac}"
  redirect: "http://bigg.ucsd.edu/models/universal/reactions/$id"
  description: "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions."
  subject: "model"
  location: "USA"
  synonym: "CPC"
  institution: "Systems Biology Research Group at the University of California, San Diego"
  prefixed: "false"
  test: "13GS"
  probe: "http://bigg.ucsd.edu/models/universal/reactions/13GS"
  pattern: "^[a-z_A-Z0-9]+$"
  state: "94:Up"
  more: "http://bigg.ucsd.edu/universal/reactions"

rrid:
  type: "scheme"
  name: "RRID at SciCrunch"
  alias: 
  provider: 
  provider_id: "MIR:00100735"
  sort_score: "4"
  primary: "false"
  forward: "https://scicrunch.org/resolver/RRID:${ac}"
  redirect: "https://scicrunch.org/resolver/RRID:$id"
  description: "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools. The initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch."
  subject: "registry"
  location: "USA"
  synonym: "Research Resource IDentifier"
  institution: "University of California, San Diego"
  prefixed: "true"
  test: "AB_262044"
  probe: "https://scicrunch.org/resolver/RRID:AB_262044"
  pattern: "^RRID:[A-Z_a-z-0-9]+$"
  state: "83:Up"
  more: "https://scicrunch.org/resolver"

umls:
  type: "scheme"
  name: "Unified Medical Language System at LinkedLifeData"
  alias: 
  provider: 
  provider_id: "MIR:00100736"
  sort_score: "6"
  primary: "true"
  forward: "http://linkedlifedata.com/resource/umls/id/${ac}"
  redirect: "http://linkedlifedata.com/resource/umls/id/$id"
  description: "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank."
  subject: "controlled vocabulary"
  location: "Bulgaria"
  synonym: "Unified Medical Language System"
  institution: "Linkedlifedata, Ontotext, Sofia"
  prefixed: "false"
  test: "C0021390"
  probe: "http://linkedlifedata.com/resource/umls/id/C0021390"
  pattern: "^C\\d+$"
  state: "0:Unknown"
  more: "http://linkedlifedata.com/"

mesh:
  type: "scheme"
  name: "MeSH Linked Data at National Library of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100737"
  sort_score: "4"
  primary: "false"
  forward: "http://id.nlm.nih.gov/mesh/${ac}"
  redirect: "http://id.nlm.nih.gov/mesh/$id"
  description: "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc."
  subject: 
  location: "USA"
  synonym: "Medical Subject Headings"
  institution: "U.S. National Library of Medicine, National Institute of Health, Maryland"
  prefixed: "false"
  test: "C000100"
  probe: "http://id.nlm.nih.gov/mesh/C000100"
  pattern: "^(C|D)\\d{6}$"
  state: "67:Down"
  more: "http://id.nlm.nih.gov/mesh/"

emdb:
  type: "scheme"
  name: "EMDB at Protein Data Bank in Europe"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100738"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/pdbe/entry/emdb/${ac}"
  redirect: "https://www.ebi.ac.uk/pdbe/entry/emdb/$id"
  description: "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community."
  subject: "mass spectrometry"
  location: "UK"
  synonym: "EMDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "EMD-1001"
  probe: "https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-1001"
  pattern: "^EMD-\\d{4}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/pdbe/emdb/"

ebi/emdb:
  type: "synonym"
  for: "emdb"

mirtarbase:
  type: "scheme"
  name: "miRTarBase at National Chiao Tung University"
  alias: 
  provider: 
  provider_id: "MIR:00100739"
  sort_score: "1"
  primary: "false"
  forward: "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=${ac}"
  redirect: "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=$id"
  description: "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments."
  subject: "nucleotide; interaction"
  location: "Taiwan"
  synonym: "EMDB"
  institution: "Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu"
  prefixed: "false"
  test: "MIRT000002"
  probe: "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=MIRT000002"
  pattern: "^MIRT\\d{6}$"
  state: "100:Up"
  more: "http://mirtarbase.mbc.nctu.edu.tw/"

meddra:
  type: "scheme"
  name: "MedDRA through BioPortal"
  alias: 
  provider: 
  provider_id: "MIR:00100740"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/MEDDRA/${ac}"
  redirect: "http://purl.bioontology.org/ontology/MEDDRA/$id"
  description: "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT)."
  subject: "ontology; controlled vocabulary"
  location: "USA"
  synonym: "Medical Dictionary for Regulatory Activities"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "10015919"
  probe: "http://purl.bioontology.org/ontology/MEDDRA/10015919"
  pattern: "^\\d+$"
  state: "97:Up"
  more: "http://bioportal.bioontology.org/ontologies/MEDDRA"

dashr:
  type: "scheme"
  name: "DASHR at  University of Pennsylvania"
  alias: 
  provider: 
  provider_id: "MIR:00100741"
  sort_score: "4"
  primary: "false"
  forward: "http://lisanwanglab.org/DASHR/entry/${ac}"
  redirect: "http://lisanwanglab.org/DASHR/entry/$id"
  description: "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records."
  subject: "nucleotide; human; sequence"
  location: "USA"
  synonym: "Database of small human noncoding RNAs"
  institution: "Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia"
  prefixed: "false"
  test: "hsa-mir-200a"
  probe: "http://lisanwanglab.org/DASHR/entry/hsa-mir-200a"
  pattern: "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"
  state: "74:Down"
  more: "http://lisanwanglab.org/DASHR/"

dashr.expression:
  type: "scheme"
  name: "DASHR expression at University of Pennsylvania"
  alias: 
  provider: 
  provider_id: "MIR:00100742"
  sort_score: "4"
  primary: "false"
  forward: "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#${ac}#exprPerTissueTable"
  redirect: "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$id#exprPerTissueTable"
  description: "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression."
  subject: "nucleotide; expression; sequence; human"
  location: "USA"
  synonym: "Database of small human noncoding RNAs"
  institution: "Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia"
  prefixed: "false"
  test: "hsa-mir-200a"
  probe: "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#hsa-mir-200a#exprPerTissueTable"
  pattern: "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"
  state: "74:Down"
  more: "https://dashr1.lisanwanglab.org/show-expression-table.php?start=0"

splash:
  type: "scheme"
  name: "Mass Bank of North America (MoNA)"
  alias: 
  provider: 
  provider_id: "MIR:00100746"
  sort_score: "4"
  primary: "false"
  forward: "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/${ac}"
  redirect: "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$id"
  description: "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance."
  subject: "mass spectrometry; metabolite; chemical"
  location: "USA"
  synonym: "Database of small human noncoding RNAs"
  institution: "University of Californai, Davis, California"
  prefixed: "false"
  test: "splash10-0zq2000000-77302b0326a418630a84"
  probe: "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/splash10-0zq2000000-77302b0326a418630a84"
  pattern: "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$"
  state: "87:Down"
  more: "http://mona.fiehnlab.ucdavis.edu/"

metanetx.chemical:
  type: "scheme"
  name: "MetaNetX chemical at SIB Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100748"
  sort_score: "1"
  primary: "false"
  forward: "https://www.metanetx.org/chem_info/${ac}"
  redirect: "https://www.metanetx.org/chem_info/$id"
  description: "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components."
  subject: "chemical; model"
  location: "Switzerland"
  synonym: "Database of small human noncoding RNAs"
  institution: "Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne"
  prefixed: "false"
  test: "MNXM1723"
  probe: "https://www.metanetx.org/chem_info/MNXM1723"
  pattern: "^(MNXM\\d+|BIOMASS)$"
  state: "50:Unknown"
  more: "http://www.metanetx.org/"

metanetx.reaction:
  type: "scheme"
  name: "MetaNetX reaction at SIB Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100749"
  sort_score: "1"
  primary: "false"
  forward: "http://www.metanetx.org/equa_info/${ac}"
  redirect: "http://www.metanetx.org/equa_info/$id"
  description: "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions."
  subject: "reaction; model"
  location: "Switzerland"
  synonym: "Database of small human noncoding RNAs"
  institution: "Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne"
  prefixed: "false"
  test: "MNXR101574"
  probe: "http://www.metanetx.org/equa_info/MNXR101574"
  pattern: "^MNXR\\d+$"
  state: "55:Unknown"
  more: "http://www.metanetx.org/"

metanetx.compartment:
  type: "scheme"
  name: "MetaNetX compartment at SIB Swiss Institute of Bioinformatics"
  alias: 
  provider: 
  provider_id: "MIR:00100750"
  sort_score: "1"
  primary: "false"
  forward: "http://www.metanetx.org/comp_info/${ac}"
  redirect: "http://www.metanetx.org/comp_info/$id"
  description: "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments."
  subject: "model"
  location: "Switzerland"
  synonym: "Database of small human noncoding RNAs"
  institution: "Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne"
  prefixed: "false"
  test: "MNXC15"
  probe: "http://www.metanetx.org/comp_info/MNXC15"
  pattern: "^(MNX[CD]\\d+|BOUNDARY)$"
  state: "55:Unknown"
  more: "http://www.metanetx.org/"

unipathway.reaction:
  type: "scheme"
  name: "UniPathway Reaction at Swiss Institute of Bioinformatics (SIB)"
  alias: 
  provider: 
  provider_id: "MIR:00100752"
  sort_score: "1"
  primary: "false"
  forward: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=${ac}"
  redirect: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$id"
  description: "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions."
  subject: "reaction"
  location: "Switzerland"
  synonym: "Database of small human noncoding RNAs"
  institution: "Swiss Institute of Bioinformatics (SIB) and French National Institute for Research in Computer Science and Control"
  prefixed: "false"
  test: "UCR00226"
  probe: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=UCR00226"
  pattern: "^UCR\\d{5}$"
  state: "16:Down"
  more: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway"

hp:
  type: "scheme"
  name: "Human Phenotype Ontology at Institute for Medical Genetics and Human Genetics"
  alias: 
  provider: 
  provider_id: "MIR:00100753"
  sort_score: "6"
  primary: "true"
  forward: "http://compbio.charite.de/hpoweb/showterm?id=HP:${ac}"
  redirect: "http://compbio.charite.de/hpoweb/showterm?id=HP:$id"
  description: "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM."
  subject: "human; phenotype; ontology"
  location: "Germany"
  synonym: "HPO"
  institution: "Institute for Medical Genetics and Human Genetics, Charit&#xE9;-Universit&#xE4;tsmedizin, Berlin"
  prefixed: "true"
  test: "0000118"
  probe: "http://compbio.charite.de/hpoweb/showterm?id=HP:0000118"
  pattern: "^HP:\\d{7}$"
  state: "97:Probably up"
  more: "http://human-phenotype-ontology.github.io/"

ols/hp:
  type: "scheme"
  name: "Human Phenotype Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100754"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/hp/terms?obo_id=HP:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/hp/terms?obo_id=HP:$id"
  description: "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM."
  subject: "human; phenotype; ontology"
  location: "UK"
  synonym: "HPO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0000118"
  probe: "https://www.ebi.ac.uk/ols/ontologies/hp/terms?obo_id=HP:0000118"
  pattern: "^HP:\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/hp"

sasbdb:
  type: "scheme"
  name: "SASBDB at European Molecular Biology Laboratory"
  alias: 
  provider: 
  provider_id: "MIR:00100763"
  sort_score: "1"
  primary: "false"
  forward: "http://www.sasbdb.org/data/${ac}"
  redirect: "http://www.sasbdb.org/data/$id"
  description: "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data."
  subject: "domain; structure"
  location: "Germany"
  synonym: "Small Angle Scattering Biological Data Bank"
  institution: "Biological Small Angle Scattering Group, European Molecular Biology Laboratory, Hamburg Outstation, Hamburg"
  prefixed: "false"
  test: "SASDAX8"
  probe: "http://www.sasbdb.org/data/SASDAX8"
  pattern: "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$"
  state: "100:Up"
  more: "http://www.sasbdb.org/"

hgnc.genefamily:
  type: "scheme"
  name: "HGNC gene family at HUGO Genome Nomenclature Committee"
  alias: 
  provider: 
  provider_id: "MIR:00100765"
  sort_score: "2"
  primary: "false"
  forward: "https://www.genenames.org/cgi-bin/genefamilies/set/${ac}"
  redirect: "https://www.genenames.org/cgi-bin/genefamilies/set/$id"
  description: "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families."
  subject: "human; schema.org"
  location: "UK"
  synonym: "Small Angle Scattering Biological Data Bank"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "141"
  probe: "https://www.genenames.org/cgi-bin/genefamilies/set/141"
  pattern: "^\\d+$"
  state: "73:Down"
  more: "https://www.genenames.org/"

mdm:
  type: "scheme"
  name: "MDM at University of Muenster"
  alias: 
  provider: 
  provider_id: "MIR:00100766"
  sort_score: "1"
  primary: "false"
  forward: "https://medical-data-models.org/forms/${ac}"
  redirect: "https://medical-data-models.org/forms/$id"
  description: "The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems."
  subject: "human; registry"
  location: "Germany"
  synonym: "Medical Data Models"
  institution: "Institute of Medical Informatics, University of Muenster"
  prefixed: "false"
  test: "4776"
  probe: "https://medical-data-models.org/forms/4776"
  pattern: "^\\d+$"
  state: "57:Up"
  more: "https://medical-data-models.org/"

probonto:
  type: "scheme"
  name: "ProbOnto through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100768"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form=${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form=$id"
  description: "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae.  It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities."
  subject: 
  location: "UK"
  synonym: "Probability Distribution Ontology"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "PROB_c0000005"
  probe: "https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form=PROB_c0000005"
  pattern: "^PROB_c\\d+$"
  state: "96:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/probonto"

ols/probonto:
  type: "synonym"
  for: "probonto"

apid.interactions:
  type: "scheme"
  name: "APID at Salamanca"
  alias: 
  provider: 
  provider_id: "MIR:00100769"
  sort_score: "1"
  primary: "false"
  forward: "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=${ac}"
  redirect: "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$id"
  description: "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous  organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on  quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier."
  subject: "protein; interaction"
  location: "Spain"
  synonym: "Agile Protein Interactomes DataServer"
  institution: "Cancer Research Center (CiC-IBMCC), Consejo Superior de Investigaciones Cient&#xED;ficas (CSIC) and Universidad de Salamanca (USAL), Salamanca"
  prefixed: "false"
  test: "P01116"
  probe: "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=P01116"
  pattern: "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$"
  state: "97:Up"
  more: "http://cicblade.dep.usal.es:8080/APID/"

storedb:
  type: "scheme"
  name: "STOREDB at University of Cambridge"
  alias: 
  provider: 
  provider_id: "MIR:00100771"
  sort_score: "2"
  primary: "false"
  forward: "https://www.storedb.org/?${ac}"
  redirect: "https://www.storedb.org/?$id"
  description: "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons."
  subject: 
  location: "UK"
  synonym: "Agile Protein Interactomes DataServer"
  institution: "University of Cambridge, Department of Physiology, Downing Street, Cambridge"
  prefixed: "false"
  test: "STOREDB:STUDY1040"
  probe: "https://www.storedb.org/?STOREDB:STUDY1040"
  pattern: "^STOREDB:(STUDY|FILE|DATASET)\\d+$"
  state: "94:Up"
  more: "https://www.storedb.org/"

kegg:
  type: "scheme"
  name: "KEGG at Kyoto University Bioinformatics Center"
  alias: 
  provider: 
  provider_id: "MIR:00100773"
  sort_score: "1"
  primary: "false"
  forward: "http://www.kegg.jp/entry/${ac}"
  redirect: "http://www.kegg.jp/entry/$id"
  description: "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies."
  subject: "chemical; pathway; genome"
  location: "Japan"
  synonym: "KEGG"
  institution: "Kyoto University Bioinformatics Center"
  prefixed: "false"
  test: "hsa00190"
  probe: "http://www.kegg.jp/entry/hsa00190"
  pattern: "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$"
  state: "100:Up"
  more: "http://www.kegg.jp/"

planttfdb:
  type: "scheme"
  name: "PlantTFDB at Peking University"
  alias: 
  provider: 
  provider_id: "MIR:00100772"
  sort_score: "1"
  primary: "false"
  forward: "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=${ac}"
  redirect: "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$id"
  description: "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors."
  subject: "interaction; protein; DNA"
  location: "Peoples Republic of China"
  synonym: "PlantTFDB"
  institution: "Center for Bioinformatics, Peking University, Beijing"
  prefixed: "false"
  test: "Ath_AT1G01030.1"
  probe: "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=Ath_AT1G01030.1"
  pattern: "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$"
  state: "90:Up"
  more: "http://planttfdb.cbi.pku.edu.cn"

mp:
  type: "scheme"
  name: "Mammalian Phenotype Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100776"
  sort_score: "4"
  primary: "false"
  forward: "https://bioportal.bioontology.org/ontologies/MP/MP:${ac}"
  redirect: "https://bioportal.bioontology.org/ontologies/MP/MP:$id"
  description: "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways."
  subject: "ontology; phenotype; mammalian"
  location: "USA"
  synonym: "PlantTFDB"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "0005452"
  probe: "https://bioportal.bioontology.org/ontologies/MP/MP:0005452"
  pattern: "^MP:\\d{7}$"
  state: "63:Down"
  more: "https://bioportal.bioontology.org/ontologies/MP"

bptl/mp:
  type: "synonym"
  for: "mp"

z067/mp:
  type: "scheme"
  name: "Mammalian Phenotype Ontology at The Jackson Lab"
  alias: 
  provider: "z067"
  provider_id: "MIR:00100774"
  sort_score: "4"
  primary: "false"
  forward: "http://www.informatics.jax.org/searches/Phat.cgi?id=MP:${ac}"
  redirect: "http://www.informatics.jax.org/searches/Phat.cgi?id=MP:$id"
  description: "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways."
  subject: "ontology; phenotype; mammalian"
  location: "USA"
  synonym: "PlantTFDB"
  institution: "The Jackson Laboratory, Bar Harbor, Maine"
  prefixed: "true"
  test: "0005452"
  probe: "http://www.informatics.jax.org/searches/Phat.cgi?id=MP:0005452"
  pattern: "^MP:\\d{7}$"
  state: "18:Down"
  more: "http://www.informatics.jax.org/"

ols/mp:
  type: "scheme"
  name: "Mammalian Phenotype Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100775"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/mp/terms?obo_id=MP:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/mp/terms?obo_id=MP:$id"
  description: "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways."
  subject: "ontology; phenotype; mammalian"
  location: "UK"
  synonym: "PlantTFDB"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "0005452"
  probe: "https://www.ebi.ac.uk/ols/ontologies/mp/terms?obo_id=MP:0005452"
  pattern: "^MP:\\d{7}$"
  state: "99:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/mp/"

worms:
  type: "scheme"
  name: "World Register of Marine Species"
  alias: 
  provider: 
  provider_id: "MIR:00100778"
  sort_score: "1"
  primary: "false"
  forward: "http://www.marinespecies.org/aphia.php?p=taxdetails&id=${ac}"
  redirect: "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$id"
  description: "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts."
  subject: "classification; taxonomy"
  location: "Belgium"
  synonym: "WoRMS"
  institution: "Flanders Marine Institute, Ostend"
  prefixed: "false"
  test: "146421"
  probe: "http://www.marinespecies.org/aphia.php?p=taxdetails&id=146421"
  pattern: "^\\d+$"
  state: "100:Up"
  more: "http://www.marinespecies.org/"

multicellds.collection:
  type: "scheme"
  name: "MultiCellDScollection at Keck School of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100779"
  sort_score: "4"
  primary: "false"
  forward: "http://multicellds.org/MultiCellDB/${ac}"
  redirect: "http://multicellds.org/MultiCellDB/$id"
  description: "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections)."
  subject: "model"
  location: "USA"
  synonym: "WoRMS"
  institution: "Center for Applied Molecular Medicine, Keck School of Medicine, University of Southern California, California"
  prefixed: "false"
  test: "MCDS_C_0000000001"
  probe: "http://multicellds.org/MultiCellDB/MCDS_C_0000000001"
  pattern: "^MCDS_C_[a-zA-Z0-9]{1,10}$"
  state: "63:Down"
  more: "http://multicellds.org/MultiCellDB.php"

multicellds.snapshot:
  type: "scheme"
  name: "MultiCellDS snapshot at Keck School of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100780"
  sort_score: "4"
  primary: "false"
  forward: "http://multicellds.org/MultiCellDB/${ac}"
  redirect: "http://multicellds.org/MultiCellDB/$id"
  description: "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data."
  subject: "model"
  location: "USA"
  synonym: "WoRMS"
  institution: "Center for Applied Molecular Medicine, Keck School of Medicine, University of Southern California, California"
  prefixed: "false"
  test: "MCDS_S_0000000001"
  probe: "http://multicellds.org/MultiCellDB/MCDS_S_0000000001"
  pattern: "^MCDS_S_[a-zA-Z0-9]{1,10}$"
  state: "0:Down"
  more: "http://multicellds.org/MultiCellDB.php"

multicellds.cell_line:
  type: "scheme"
  name: "MultiCellDS Digital Cell Line at Keck School of Medicine"
  alias: 
  provider: 
  provider_id: "MIR:00100781"
  sort_score: "4"
  primary: "false"
  forward: "http://multicellds.org/MultiCellDB/${ac}"
  redirect: "http://multicellds.org/MultiCellDB/$id"
  description: "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata."
  subject: "model"
  location: "USA"
  synonym: "WoRMS"
  institution: "Center for Applied Molecular Medicine, Keck School of Medicine, University of Southern California, California"
  prefixed: "false"
  test: "MCDS_L_0000000001"
  probe: "http://multicellds.org/MultiCellDB/MCDS_L_0000000001"
  pattern: "^MCDS_L_[a-zA-Z0-9]{1,10}$"
  state: "63:Down"
  more: "http://multicellds.org/MultiCellDB.php"

ecyano.entity:
  type: "scheme"
  name: "e-cyanobacterium entity at Masaryk University Brno"
  alias: 
  provider: 
  provider_id: "MIR:00100782"
  sort_score: "1"
  primary: "false"
  forward: "http://e-cyanobacterium.org/bcs/entity/${ac}/"
  redirect: "http://e-cyanobacterium.org/bcs/entity/$id/"
  description: "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction &#x2014; as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities."
  subject: "model; metabolite"
  location: "Czech Republic"
  synonym: "WoRMS"
  institution: "Systems Biology Laboratory, Faculty of Informatics, Masaryk University Brno"
  prefixed: "false"
  test: "23"
  probe: "http://e-cyanobacterium.org/bcs/entity/23/"
  pattern: "^\\d+$"
  state: "64:Up"
  more: "http://www.e-cyanobacterium.org/bcs/entity/"

ecyano.model:
  type: "scheme"
  name: "e-cyanobacterium entity at Masaryk University Brno"
  alias: 
  provider: 
  provider_id: "MIR:00100783"
  sort_score: "1"
  primary: "false"
  forward: "http://e-cyanobacterium.org/models/model/${ac}/"
  redirect: "http://e-cyanobacterium.org/models/model/$id/"
  description: "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction &#x2014; as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models."
  subject: "microbial; model"
  location: "Czech Republic"
  synonym: "WoRMS"
  institution: "Systems Biology Laboratory, Faculty of Informatics, Masaryk University Brno"
  prefixed: "false"
  test: "26"
  probe: "http://e-cyanobacterium.org/models/model/26/"
  pattern: "^\\d+$"
  state: "64:Up"
  more: "http://e-cyanobacterium.org/models/"

ecyano.rule:
  type: "scheme"
  name: "e-cyanobacterium entity at Masaryk University Brno"
  alias: 
  provider: 
  provider_id: "MIR:00100784"
  sort_score: "1"
  primary: "false"
  forward: "http://e-cyanobacterium.org/bcs/rule/${ac}/"
  redirect: "http://e-cyanobacterium.org/bcs/rule/$id/"
  description: "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction &#x2014; as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules."
  subject: "model; reaction"
  location: "Czech Republic"
  synonym: "WoRMS"
  institution: "Systems Biology Laboratory, Faculty of Informatics, Masaryk University Brno"
  prefixed: "false"
  test: "56"
  probe: "http://e-cyanobacterium.org/bcs/rule/56/"
  pattern: "^\\d+$"
  state: "64:Up"
  more: "http://www.e-cyanobacterium.org/bcs/rule/"

lincs.data:
  type: "scheme"
  name: "LINCS Data at University of Miami"
  alias: 
  provider: 
  provider_id: "MIR:00100785"
  sort_score: "6"
  primary: "true"
  forward: "http://lincsportal.ccs.miami.edu/datasets/#/view/${ac}"
  redirect: "http://lincsportal.ccs.miami.edu/datasets/#/view/$id"
  description: "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level)."
  subject: "human"
  location: "USA"
  synonym: "WoRMS"
  institution: "University of Miami, BD2K-LINCS DCIC"
  prefixed: "false"
  test: "LDS-1110"
  probe: "http://lincsportal.ccs.miami.edu/datasets/#/view/LDS-1110"
  pattern: "^[EL]D[SG]-\\d+$"
  state: "96:Probably up"
  more: "http://lincsportal.ccs.miami.edu/datasets/"

omicsdi/lincs.data:
  type: "scheme"
  name: "Lincs through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100856"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/lincs/${ac}"
  redirect: "https://www.omicsdi.org/dataset/lincs/$id"
  description: "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level)."
  subject: "human"
  location: "UK"
  synonym: "WoRMS"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "LDS-1110"
  probe: "https://www.omicsdi.org/dataset/lincs/LDS-1110"
  pattern: "^[EL]D[SG]-\\d+$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

agricola:
  type: "scheme"
  name: "AGRICOLA at National Agricultural Library"
  alias: 
  provider: 
  provider_id: "MIR:00100789"
  sort_score: "4"
  primary: "false"
  forward: "http://ddr.nal.usda.gov/dspace/handle/10113/${ac}"
  redirect: "http://ddr.nal.usda.gov/dspace/handle/10113/$id"
  description: "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century."
  subject: 
  location: "USA"
  synonym: "Agricultural Online Access"
  institution: "National Agricultural Library, United States Department of Agriculture"
  prefixed: "false"
  test: "50018"
  probe: "http://ddr.nal.usda.gov/dspace/handle/10113/50018"
  pattern: "^\\d+$"
  state: "31:Down"
  more: "http://agricola.nal.usda.gov/"

ms:
  type: "scheme"
  name: "Mass Spectrometry Controlled Vocabulary through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100787"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/MS/MS:${ac}"
  redirect: "http://purl.bioontology.org/ontology/MS/MS:$id"
  description: "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance."
  subject: "mass spectrometry; controlled vocabulary"
  location: "USA"
  synonym: "Agricultural Online Access"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "1000001"
  probe: "http://purl.bioontology.org/ontology/MS/MS:1000001"
  pattern: "^MS:\\d{7}$"
  state: "0:Unknown"
  more: "https://bioportal.bioontology.org/ontologies/MS"

bptl/ms:
  type: "synonym"
  for: "ms"

ols/ms:
  type: "scheme"
  name: "Mass Spectrometry Controlled Vocabulary through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100786"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/ms/terms?obo_id=MS:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/ms/terms?obo_id=MS:$id"
  description: "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance."
  subject: "mass spectrometry; controlled vocabulary"
  location: "UK"
  synonym: "Agricultural Online Access"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "1000001"
  probe: "https://www.ebi.ac.uk/ols/ontologies/ms/terms?obo_id=MS:1000001"
  pattern: "^MS:\\d{7}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/ms"

envo:
  type: "scheme"
  name: "The Environment Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100791"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.bioontology.org/ontology/ENVO/ENVO:${ac}"
  redirect: "http://purl.bioontology.org/ontology/ENVO/ENVO:$id"
  description: "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations."
  subject: "ontology"
  location: "USA"
  synonym: "ENVO"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "true"
  test: "09200010"
  probe: "http://purl.bioontology.org/ontology/ENVO/ENVO:09200010"
  pattern: "^ENVO:\\d{8}$"
  state: "97:Up"
  more: "http://purl.bioontology.org/ontology/ENVO/"

bptl/envo:
  type: "synonym"
  for: "envo"

ols/envo:
  type: "scheme"
  name: "The Environment Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100790"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/envo/terms?obo_id=ENVO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/envo/terms?obo_id=ENVO:$id"
  description: "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations."
  subject: "ontology"
  location: "UK"
  synonym: "ENVO"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "09200010"
  probe: "https://www.ebi.ac.uk/ols/ontologies/envo/terms?obo_id=ENVO:09200010"
  pattern: "^ENVO:\\d{8}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/envo"

grid:
  type: "scheme"
  name: "GRID at Digital Science & Research Ltd."
  alias: 
  provider: 
  provider_id: "MIR:00100793"
  sort_score: "2"
  primary: "false"
  forward: "https://www.grid.ac/institutes/${ac}"
  redirect: "https://www.grid.ac/institutes/$id"
  description: "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally."
  subject: "schema.org"
  location: "UK"
  synonym: "Global Research Identifier Database"
  institution: "Digital Science &amp;amp; Research Ltd, London"
  prefixed: "false"
  test: "grid.225360.0"
  probe: "https://www.grid.ac/institutes/grid.225360.0"
  pattern: "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$"
  state: "100:Up"
  more: "https://www.grid.ac/"

medgen:
  type: "scheme"
  name: "MedGen at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100794"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/medgen/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/medgen/$id"
  description: "MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder."
  subject: "gene; human; phenotype"
  location: "USA"
  synonym: "Global Research Identifier Database"
  institution: "National Center for Biotechnology Information (NCBI), NIH, Maryland"
  prefixed: "false"
  test: "760050"
  probe: "https://www.ncbi.nlm.nih.gov/medgen/760050"
  pattern: "^[CN]*\\d{4,7}$"
  state: "99:Up"
  more: "https://www.ncbi.nlm.nih.gov/medgen/"

ncbi/medgen:
  type: "synonym"
  for: "medgen"

clinvar.submission:
  type: "scheme"
  name: "ClinVar Submission at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100795"
  sort_score: "5"
  primary: "false"
  forward: "http://www.ncbi.nlm.nih.gov/clinvar?term=${ac}"
  redirect: "http://www.ncbi.nlm.nih.gov/clinvar?term=$id"
  description: "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession."
  subject: 
  location: "USA"
  synonym: "Global Research Identifier Database"
  institution: "National Center for Biotechnology Information (NCBI), NIH, Maryland"
  prefixed: "false"
  test: "SCV000151292"
  probe: "http://www.ncbi.nlm.nih.gov/clinvar?term=SCV000151292"
  pattern: "^SCV\\d+(\\.\\d+)?$"
  state: "99:Up"
  more: "http://www.ncbi.nlm.nih.gov/clinvar/"

ncbi/clinvar.submission:
  type: "synonym"
  for: "clinvar.submission"

clinvar:
  type: "scheme"
  name: "ClinVar Variant at NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100796"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/clinvar/variation/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/clinvar/variation/$id"
  description: "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier."
  subject: 
  location: "USA"
  synonym: "Global Research Identifier Database"
  institution: "National Center for Biotechnology Information (NCBI), NIH, Maryland"
  prefixed: "false"
  test: "12345"
  probe: "https://www.ncbi.nlm.nih.gov/clinvar/variation/12345"
  pattern: "^\\d+$"
  state: "99:Up"
  more: "http://www.ncbi.nlm.nih.gov/clinvar/"

ncbi/clinvar:
  type: "synonym"
  for: "clinvar"

bao:
  type: "scheme"
  name: "BioAssay Ontology through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100797"
  sort_score: "4"
  primary: "false"
  forward: "http://bioportal.bioontology.org/ontologies/BAO/bao:BAO_${ac}"
  redirect: "http://bioportal.bioontology.org/ontologies/BAO/bao:BAO_$id"
  description: "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis."
  subject: 
  location: "USA"
  synonym: "Global Research Identifier Database"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "0002989"
  probe: "http://bioportal.bioontology.org/ontologies/BAO/bao:BAO_0002989"
  pattern: "^\\d{7}$"
  state: "99:Up"
  more: "http://bioportal.bioontology.org/ontologies/BAO/"

bptl/bao:
  type: "synonym"
  for: "bao"

ols/bao:
  type: "scheme"
  name: "BioAssay Ontology through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100798"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/bao/terms?obo_id=BAO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/bao/terms?obo_id=BAO:$id"
  description: "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis."
  subject: 
  location: "UK"
  synonym: "Global Research Identifier Database"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "0002989"
  probe: "https://www.ebi.ac.uk/ols/ontologies/bao/terms?obo_id=BAO:0002989"
  pattern: "^\\d{7}$"
  state: "100:Up"
  more: "https://bioportal.bioontology.org/ontologies/BAO/"

cellosaurus:
  type: "scheme"
  name: "Cellosaurus through SIB"
  alias: 
  provider: "sib"
  provider_id: "MIR:00100799"
  sort_score: "1"
  primary: "false"
  forward: "https://web.expasy.org/cellosaurus/${ac}"
  redirect: "https://web.expasy.org/cellosaurus/$id"
  description: "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines."
  subject: 
  location: "Swizerland"
  synonym: "Global Research Identifier Database"
  institution: "Swiss Institute of Bioinformatics"
  prefixed: "false"
  test: "CVCL_0030"
  probe: "https://web.expasy.org/cellosaurus/CVCL_0030"
  pattern: "CVCL_[A-Z0-9]{4}"
  state: "38:Unknown"
  more: "https://web.expasy.org/cellosaurus/"

sib/cellosaurus:
  type: "synonym"
  for: "cellosaurus"

mir:
  type: "scheme"
  name: "Identifiers.org Registry through EBI"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100800"
  sort_score: "2"
  primary: "false"
  forward: "https://identifiers.org/registry?query=\"MIR:${ac}\""
  redirect: "https://identifiers.org/registry?query=\"MIR:$id\""
  description: "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form &#x201C;PREFIX:ACCESSION&#x201D; or \"PROVIDER/PREFIX:ACCESSION&#x201D; commonly used to specify bioinformatics and other data resources."
  subject: 
  location: "UK"
  synonym: "Global Research Identifier Database"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "00100037"
  probe: "https://identifiers.org/registry?query=\"MIR:00100037\""
  pattern: "^MIR:\\d{8}$"
  state: "86:Down"
  more: "https://identifiers.org/registry"

ebi/mir:
  type: "synonym"
  for: "mir"

pgx:
  type: "scheme"
  name: "Progenetix"
  alias: 
  provider: 
  provider_id: "MIR:00100801"
  sort_score: "1"
  primary: "false"
  forward: "http://progenetix.org/pgx:${ac}"
  redirect: "http://progenetix.org/pgx:$id"
  description: "The Progenetix database provides an overview of copy number abnormalities in human cancer from currently 32317 array and chromosomal Comparative Genomic Hybridization (CGH) experiments, as well as Whole Genome or Whole Exome Sequencing (WGS, WES) studies. The cancer profile data in Progenetix was curated from 1026 articles and represents 364 different cancer types, according to the International classification of Diseases in Oncology (ICD-O)."
  subject: 
  location: "Switzerland"
  synonym: "Cancer Genome Knowledge Resource"
  institution: "University of Zurich"
  prefixed: "false"
  test: "icdom:8500_3"
  probe: "http://progenetix.org/pgx:icdom:8500_3"
  pattern: "^[\\w\\-:,]{3,64}$"
  state: "49:Down"
  more: "http://progenetix.org/"

cosmic:
  type: "scheme"
  name: "COSMIC Gene at Sanger"
  alias: 
  provider: 
  provider_id: "MIR:00100802"
  sort_score: "2"
  primary: "false"
  forward: "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=${ac}"
  redirect: "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$id"
  description: "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes."
  subject: "schema.org"
  location: "UK"
  synonym: "Catalogue of Somatic Mutations in Cancer Gene"
  institution: "Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge"
  prefixed: "false"
  test: "BRAF"
  probe: "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=BRAF"
  pattern: "^[A-Z0-9]+$"
  state: "86:Down"
  more: "http://cancer.sanger.ac.uk/cosmic/"

dbgap:
  type: "scheme"
  name: "dbGaP through NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100803"
  sort_score: "6"
  primary: "true"
  forward: "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$id"
  description: "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype."
  subject: 
  location: "USA"
  synonym: "Database of Genotypes and Phenotypes"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "phs000768.v2.p1"
  probe: "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000768.v2.p1"
  pattern: "^phs[0-9]{6}(.v\\d+.p\\d+)?$"
  state: "99:Up"
  more: "https://www.ncbi.nlm.nih.gov/projects/gap"

ncbi/dbgap:
  type: "synonym"
  for: "dbgap"

iao:
  type: "scheme"
  name: "IAO through Ontobee"
  alias: 
  provider: 
  provider_id: "MIR:00100804"
  sort_score: "4"
  primary: "false"
  forward: "http://purl.obolibrary.org/obo/IAO_${ac}"
  redirect: "http://purl.obolibrary.org/obo/IAO_$id"
  description: "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch."
  subject: 
  location: "USA"
  synonym: "Database of Genotypes and Phenotypes"
  institution: "University of Pennsylvania"
  prefixed: "false"
  test: "0000030"
  probe: "http://purl.obolibrary.org/obo/IAO_0000030"
  pattern: "^\\d{7}$"
  state: "97:Up"
  more: "http://www.ontobee.org/ontology/IAO"

gdc:
  type: "scheme"
  name: "Genomic Data Commons"
  alias: 
  provider: 
  provider_id: "MIR:00100805"
  sort_score: "4"
  primary: "false"
  forward: "https://portal.gdc.cancer.gov/cases/${ac}"
  redirect: "https://portal.gdc.cancer.gov/cases/$id"
  description: "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis."
  subject: 
  location: "USA"
  synonym: "Database of Genotypes and Phenotypes"
  institution: "National Cancer Institute Genomic Data Commons, NIH "
  prefixed: "false"
  test: "ae8c77fe-e6c8-44d5-8265-4a38c637bbef"
  probe: "https://portal.gdc.cancer.gov/cases/ae8c77fe-e6c8-44d5-8265-4a38c637bbef"
  pattern: "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$"
  state: "0:Unknown"
  more: "https://gdc.cancer.gov"

omit:
  type: "scheme"
  name: "Ontology for miRNA Target (OMIT) through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100806"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_$id"
  description: "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes)."
  subject: 
  location: "UK"
  synonym: "Ontology for miRNA Target"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge "
  prefixed: "false"
  test: "0005506"
  probe: "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_0005506"
  pattern: "^\\d{7}$"
  state: "100:Up"
  more: "https://www.ebi.ac.uk/ols/ontologies/omit/"

ols/omit:
  type: "synonym"
  for: "omit"

insdc.cds:
  type: "scheme"
  name: "INSDC CDS through NCBI"
  alias: 
  provider: 
  provider_id: "MIR:00100808"
  sort_score: "4"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/protein/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/protein/$id"
  description: "The coding sequence or protein identifiers as maintained in INSDC."
  subject: 
  location: "USA"
  synonym: "Ontology for miRNA Target"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "AAA35559"
  probe: "https://www.ncbi.nlm.nih.gov/protein/AAA35559"
  pattern: "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"
  state: "99:Up"
  more: "https://www.ncbi.nlm.nih.gov/protein/"

z068/insdc.cds:
  type: "scheme"
  name: "INSDC CDS through ENA"
  alias: 
  provider: "z068"
  provider_id: "MIR:00100807"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ena/data/view/${ac}"
  redirect: "https://www.ebi.ac.uk/ena/data/view/$id"
  description: "The coding sequence or protein identifiers as maintained in INSDC."
  subject: 
  location: "UK"
  synonym: "Ontology for miRNA Target"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "AAA35559"
  probe: "https://www.ebi.ac.uk/ena/data/view/AAA35559"
  pattern: "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/ena"

z069/insdc.cds:
  type: "scheme"
  name: "INSDC CDS through DDBJ"
  alias: 
  provider: "z069"
  provider_id: "MIR:00100809"
  sort_score: "1"
  primary: "false"
  forward: "http://getentry.ddbj.nig.ac.jp/getentry/dad/${ac}"
  redirect: "http://getentry.ddbj.nig.ac.jp/getentry/dad/$id"
  description: "The coding sequence or protein identifiers as maintained in INSDC."
  subject: 
  location: "Japan"
  synonym: "Ontology for miRNA Target"
  institution: "DNA Data Bank of Japan, Mishima, Shizuoka"
  prefixed: "false"
  test: "AAA35559"
  probe: "http://getentry.ddbj.nig.ac.jp/getentry/dad/AAA35559"
  pattern: "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"
  state: "83:Up"
  more: "http://getentry.ddbj.nig.ac.jp"

insdc.gca:
  type: "scheme"
  name: "Genome assembly database NCBI"
  alias: 
  provider: "ncbi"
  provider_id: "MIR:00100811"
  sort_score: "5"
  primary: "false"
  forward: "https://www.ncbi.nlm.nih.gov/assembly/${ac}"
  redirect: "https://www.ncbi.nlm.nih.gov/assembly/$id"
  description: "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage."
  subject: 
  location: "USA"
  synonym: "Ontology for miRNA Target"
  institution: "National Center for Biotechnology Information (NCBI)"
  prefixed: "false"
  test: "GCA_000155495.1"
  probe: "https://www.ncbi.nlm.nih.gov/assembly/GCA_000155495.1"
  pattern: "^GCA_[0-9]{9}\\.[0-9]$"
  state: "99:Up"
  more: "https://www.ncbi.nlm.nih.gov/assembly/"

ncbi/insdc.gca:
  type: "synonym"
  for: "insdc.gca"

z070/insdc.gca:
  type: "scheme"
  name: "Genome assembly database through ENA"
  alias: 
  provider: "z070"
  provider_id: "MIR:00100810"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ena/data/view/${ac}"
  redirect: "https://www.ebi.ac.uk/ena/data/view/$id"
  description: "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage."
  subject: 
  location: "UK"
  synonym: "Ontology for miRNA Target"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "GCA_000155495.1"
  probe: "https://www.ebi.ac.uk/ena/data/view/GCA_000155495.1"
  pattern: "^GCA_[0-9]{9}\\.[0-9]$"
  state: "100:Probably up"
  more: "https://www.ebi.ac.uk/ena/browse/genome-assembly-database"

glytoucan:
  type: "scheme"
  name: "The Glycan Repository"
  alias: 
  provider: 
  provider_id: "MIR:00100812"
  sort_score: "1"
  primary: "false"
  forward: "https://glytoucan.org/Structures/Glycans/${ac}"
  redirect: "https://glytoucan.org/Structures/Glycans/$id"
  description: "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data."
  subject: "schema.org"
  location: "Japan"
  synonym: "Ontology for miRNA Target"
  institution: "Soka University, Hachioji, Tokyo"
  prefixed: "false"
  test: "G00054MO"
  probe: "https://glytoucan.org/Structures/Glycans/G00054MO"
  pattern: "^G[0-9]{5}[A-Z]{2}$"
  state: "97:Up"
  more: "https://glytoucan.org"

metacyc.compound:
  type: "scheme"
  name: "MetaCyc Metabolic Pathway Database"
  alias: 
  provider: 
  provider_id: "MIR:00100813"
  sort_score: "4"
  primary: "false"
  forward: "https://metacyc.org/compound?orgid=META&id=${ac}"
  redirect: "https://metacyc.org/compound?orgid=META&id=$id"
  description: "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."
  subject: 
  location: "USA"
  synonym: "MetaCyc Metabolic Pathway Database"
  institution: "Bioinformatics Research Group at SRI International, CA"
  prefixed: "false"
  test: "CPD-10330"
  probe: "https://metacyc.org/compound?orgid=META&id=CPD-10330"
  pattern: "^CPD-\\d{5}$"
  state: "100:Probably up"
  more: "https://metacyc.org"

metacyc.reaction:
  type: "scheme"
  name: "MetaCyc Metabolic Pathway Database - Reaction"
  alias: 
  provider: 
  provider_id: "MIR:00100814"
  sort_score: "4"
  primary: "false"
  forward: "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=${ac}"
  redirect: "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$id"
  description: "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."
  subject: 
  location: "USA"
  synonym: "MetaCyc Metabolic Pathway Database"
  institution: "Bioinformatics Research Group at SRI International, CA"
  prefixed: "false"
  test: "RXN-14904"
  probe: "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=RXN-14904"
  pattern: "^RXN-\\d{5}$"
  state: "47:Down"
  more: "https://metacyc.org"

d1id:
  type: "scheme"
  name: "DataONE"
  alias: 
  provider: 
  provider_id: "MIR:00100815"
  sort_score: "4"
  primary: "false"
  forward: "https://cn.dataone.org/cn/v2/resolve/{${ac}}"
  redirect: "https://cn.dataone.org/cn/v2/resolve/{$id}"
  description: "DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences."
  subject: 
  location: "USA"
  synonym: "MetaCyc Metabolic Pathway Database"
  institution: "DataONE, Albuquerque, NM"
  prefixed: "false"
  test: "00030692-0FE1-4A1B-955E-A2E55D659267"
  probe: "https://cn.dataone.org/cn/v2/resolve/{00030692-0FE1-4A1B-955E-A2E55D659267}"
  pattern: "\\S+"
  state: "100:Up"
  more: "https://www.dataone.org"

cath:
  type: "scheme"
  name: "CATH Node through UCL"
  alias: 
  provider: 
  provider_id: "MIR:00100816"
  sort_score: "2"
  primary: "false"
  forward: "http://www.cathdb.info/cathnode/${ac}"
  redirect: "http://www.cathdb.info/cathnode/$id"
  description: "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence."
  subject: "schema.org"
  location: "UK"
  synonym: "MetaCyc Metabolic Pathway Database"
  institution: "University College London"
  prefixed: "false"
  test: "1.10.8.10"
  probe: "http://www.cathdb.info/cathnode/1.10.8.10"
  pattern: "^[1-4]\\.[0-9]+\\.[0-9]+\\.[0-9]+$"
  state: "99:Up"
  more: "http://www.cathdb.info"

mmp.ref:
  type: "scheme"
  name: "MarRef through SfB"
  alias: 
  provider: 
  provider_id: "MIR:00100817"
  sort_score: "1"
  primary: "false"
  forward: "https://mmp.sfb.uit.no/databases/marref/#/records/${ac}"
  redirect: "https://mmp.sfb.uit.no/databases/marref/#/records/$id"
  description: "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes."
  subject: 
  location: "Norway"
  synonym: "Marine Metagenomics Portal"
  institution: "Center for Bioinformatics (SfB), UiT The Arctic university of Norway"
  prefixed: "false"
  test: "MMP3312982.2"
  probe: "https://mmp.sfb.uit.no/databases/marref/#/records/MMP3312982.2"
  pattern: "^MMP\\d+.\\d+$"
  state: "0:Unknown"
  more: "https://mmp.sfb.uit.no/databases/marref/"

mmp.db:
  type: "scheme"
  name: "MarDB through SfB"
  alias: 
  provider: 
  provider_id: "MIR:00100818"
  sort_score: "1"
  primary: "false"
  forward: "https://mmp.sfb.uit.no/databases/mardb/#/records/${ac}"
  redirect: "https://mmp.sfb.uit.no/databases/mardb/#/records/$id"
  description: "MarDB includes all sequenced marine microbial genomes regardless of level of completeness."
  subject: 
  location: "Norway"
  synonym: "Marine Metagenomics Portal"
  institution: "Center for Bioinformatics (SfB), UiT The Arctic university of Norway"
  prefixed: "false"
  test: "MMP02954345.1"
  probe: "https://mmp.sfb.uit.no/databases/mardb/#/records/MMP02954345.1"
  pattern: "^MMP\\d+.\\d+$"
  state: "0:Unknown"
  more: "https://mmp.sfb.uit.no/databases/mardb/"

mmp.cat:
  type: "scheme"
  name: "MarCat through SfB"
  alias: 
  provider: 
  provider_id: "MIR:00100819"
  sort_score: "1"
  primary: "false"
  forward: "https://mmp.sfb.uit.no/databases/marcat/#/records/${ac}"
  redirect: "https://mmp.sfb.uit.no/databases/marcat/#/records/$id"
  description: "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples."
  subject: 
  location: "Norway"
  synonym: "Marine Metagenomics Portal"
  institution: "Center for Bioinformatics (SfB), UiT The Arctic university of Norway"
  prefixed: "false"
  test: "MMP743597.11"
  probe: "https://mmp.sfb.uit.no/databases/marcat/#/records/MMP743597.11"
  pattern: "^MMP\\d+.\\d+$"
  state: "0:Unknown"
  more: "https://mmp.sfb.uit.no/databases/marcat/"

biotools:
  type: "scheme"
  name: "BioTools"
  alias: 
  provider: 
  provider_id: "MIR:00100820"
  sort_score: "1"
  primary: "false"
  forward: "https://bio.tools/${ac}"
  redirect: "https://bio.tools/$id"
  description: "Tool and data services registry."
  subject: 
  location: "Denmark"
  synonym: "Marine Metagenomics Portal"
  institution: "Elixir-DK"
  prefixed: "false"
  test: "uniprotkb"
  probe: "https://bio.tools/uniprotkb"
  pattern: "^[A-Za-z0-9\\_]*$"
  state: "0:Unknown"
  more: "https://bio.tools/"

aop:
  type: "scheme"
  name: "AOPWiki"
  alias: 
  provider: 
  provider_id: "MIR:00100821"
  sort_score: "4"
  primary: "false"
  forward: "https://aopwiki.org/aops/${ac}"
  redirect: "https://aopwiki.org/aops/$id"
  description: "International repository of Adverse Outcome Pathways."
  subject: 
  location: "USA"
  synonym: "Marine Metagenomics Portal"
  institution: "European Commision - DG Joint Research Centre and U.S Environmental Protection Agency"
  prefixed: "false"
  test: "98"
  probe: "https://aopwiki.org/aops/98"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "https://aopwiki.org/"

ngl:
  type: "scheme"
  name: "NASA GeneLab"
  alias: 
  provider: 
  provider_id: "MIR:00100822"
  sort_score: "4"
  primary: "false"
  forward: "https://genelab-data.ndc.nasa.gov/genelab/accession/${ac}"
  redirect: "https://genelab-data.ndc.nasa.gov/genelab/accession/$id"
  description: "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA."
  subject: 
  location: "USA"
  synonym: "Marine Metagenomics Portal"
  institution: "NASA's Ames Research Center"
  prefixed: "false"
  test: "GLDS-141"
  probe: "https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-141"
  pattern: "^GLDS-\\d+$"
  state: "0:Unknown"
  more: "https://genelab-data.ndc.nasa.gov/genelab/"

erv:
  type: "scheme"
  name: "Human Endogenous Retrovirus Database"
  alias: 
  provider: 
  provider_id: "MIR:00100823"
  sort_score: "1"
  primary: "false"
  forward: "https://herv.img.cas.cz/s/${ac}"
  redirect: "https://herv.img.cas.cz/s/$id"
  description: "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features."
  subject: "genome; human"
  location: "Czech Republic"
  synonym: "Marine Metagenomics Portal"
  institution: "Institute of Molecular Genetics, Academy of Sciences of the Czech Republic"
  prefixed: "false"
  test: "THE1B"
  probe: "https://herv.img.cas.cz/s/THE1B"
  pattern: "^[A-Za-z0-9\\-\\_]+$"
  state: "100:Up"
  more: "https://herv.img.cas.cz/"

napdi:
  type: "scheme"
  name: "Natural Product-Drug Interaction Research Data Repository"
  alias: 
  provider: 
  provider_id: "MIR:00100824"
  sort_score: "4"
  primary: "false"
  forward: "https://repo.napdi.org/study/${ac}"
  redirect: "https://repo.napdi.org/study/$id"
  description: "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs)."
  subject: 
  location: "USA"
  synonym: "Marine Metagenomics Portal"
  institution: "National Center for Complementary and Integrative Health, National Institutes of Health, Washington D.C."
  prefixed: "false"
  test: "28"
  probe: "https://repo.napdi.org/study/28"
  pattern: "^[0-9]+$"
  state: "0:Unknown"
  more: "https://repo.napdi.org/"

arraymap:
  type: "scheme"
  name: "ArrayMap"
  alias: 
  provider: 
  provider_id: "MIR:00100825"
  sort_score: "1"
  primary: "false"
  forward: "https://www.arraymap.org/pgx:${ac}"
  redirect: "https://www.arraymap.org/pgx:$id"
  description: "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome."
  subject: "genome; human"
  location: "Switzerland"
  synonym: "Marine Metagenomics Portal"
  institution: "Institute of Molecular Life Sciences, University of Zurich, Zurich"
  prefixed: "false"
  test: "icdom:8500_3"
  probe: "https://www.arraymap.org/pgx:icdom:8500_3"
  pattern: "^[\\w\\-:,]{3,64}$"
  state: "0:Unknown"
  more: "https://www.arraymap.org"

begdb:
  type: "scheme"
  name: "Benchmark Energy & Geometry Database"
  alias: 
  provider: 
  provider_id: "MIR:00100826"
  sort_score: "1"
  primary: "false"
  forward: "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=${ac}"
  redirect: "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$id"
  description: "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods."
  subject: "structure"
  location: "Czech Republic"
  synonym: "BEGDB"
  institution: "Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Prague"
  prefixed: "false"
  test: "4214"
  probe: "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=4214"
  pattern: "^[0-9]+$"
  state: "0:Unknown"
  more: "http://www.begdb.com"

cameo:
  type: "scheme"
  name: "CAMEO"
  alias: 
  provider: 
  provider_id: "MIR:00100827"
  sort_score: "1"
  primary: "false"
  forward: "https://www.cameo3d.org/sp/targets/target/${ac}"
  redirect: "https://www.cameo3d.org/sp/targets/target/$id"
  description: "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on  tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB."
  subject: "structure"
  location: "Switzerland"
  synonym: "Continuous Automated Model EvaluatiOn"
  institution: "Swiss Institute of Bioinformatics, Biozentrum, University of Basel"
  prefixed: "false"
  test: "2018-03-24_00000030_1"
  probe: "https://www.cameo3d.org/sp/targets/target/2018-03-24_00000030_1"
  pattern: "^[0-9\\-_]+$"
  state: "0:Unknown"
  more: "https://cameo3d.org"

sisu:
  type: "scheme"
  name: "SISu"
  alias: 
  provider: 
  provider_id: "MIR:00100828"
  sort_score: "1"
  primary: "false"
  forward: "http://search.sisuproject.fi/#/variant/${ac}"
  redirect: "http://search.sisuproject.fi/#/variant/$id"
  description: "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies."
  subject: "human; sequence"
  location: "Finland"
  synonym: "Sequence Initiative Suomi"
  institution: "Sequencing Initiative Suomi project (SISu), Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki"
  prefixed: "false"
  test: "17:41223048"
  probe: "http://search.sisuproject.fi/#/variant/17:41223048"
  pattern: "^[0-9]+:[0-9]+$"
  state: "0:Unknown"
  more: "http://www.sisuproject.fi/"

mzspec:
  type: "scheme"
  name: "Universal Spectrum Identifier through Peptide Atlas"
  alias: 
  provider: 
  provider_id: "MIR:00100829"
  sort_score: "4"
  primary: "false"
  forward: "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum?usi=mzspec:${ac}"
  redirect: "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum?usi=mzspec:$id"
  description: "The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it."
  subject: 
  location: "USA"
  synonym: "Sequence Initiative Suomi"
  institution: "Institute for Systems Biology"
  prefixed: "true"
  test: "PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2"
  probe: "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum?usi=mzspec:PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2"
  pattern: "^mzspec:.+$"
  state: "0:Unknown"
  more: "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum"

crisprdb:
  type: "scheme"
  name: "CRISPRdb"
  alias: 
  provider: 
  provider_id: "MIR:00100830"
  sort_score: "1"
  primary: "false"
  forward: "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=${ac}"
  redirect: "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$id"
  description: "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data."
  subject: "sequence; microbial"
  location: "France"
  synonym: "Sequence Initiative Suomi"
  institution: "Universit&#xE9; Paris-Sud, Institut de G&#xE9;n&#xE9;tique et Microbiologie, Orsay,"
  prefixed: "false"
  test: "551115"
  probe: "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=551115"
  pattern: "^[0-9]+$"
  state: "0:Unknown"
  more: "http://crispr.i2bc.paris-saclay.fr/"

gnpis:
  type: "scheme"
  name: "GnpIS"
  alias: 
  provider: 
  provider_id: "MIR:00100831"
  sort_score: "1"
  primary: "false"
  forward: "https://urgi.versailles.inra.fr/gnpis/#result/term=${ac}"
  redirect: "https://urgi.versailles.inra.fr/gnpis/#result/term=$id"
  description: "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest."
  subject: "genome; fungal; plant"
  location: "France"
  synonym: "Sequence Initiative Suomi"
  institution: "URGI (Research Unit in Genomics-Info), INRA de Versailles, Route de Saint-Cyr, Versailles"
  prefixed: "false"
  test: "AY109603"
  probe: "https://urgi.versailles.inra.fr/gnpis/#result/term=AY109603"
  pattern: "^[A-Za-z0-9]+$"
  state: "0:Unknown"
  more: "https://urgi.versailles.inra.fr/gnpis/"

licebase:
  type: "scheme"
  name: "LiceBase"
  alias: 
  provider: 
  provider_id: "MIR:00100832"
  sort_score: "1"
  primary: "false"
  forward: "https://licebase.org/?q=${ac}"
  redirect: "https://licebase.org/?q=$id"
  description: "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon,  significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects."
  subject: "genome; sequence"
  location: "Norway"
  synonym: "Sequence Initiative Suomi"
  institution: "Sea Lice Research Centre (SLRC), University of Bergen"
  prefixed: "false"
  test: "EMLSAT00000003403"
  probe: "https://licebase.org/?q=EMLSAT00000003403"
  pattern: "^[A-Za-z0-9\\-\\/]+$"
  state: "0:Unknown"
  more: "https://licebase.org"

sugarbind:
  type: "scheme"
  name: "SugarBind"
  alias: 
  provider: 
  provider_id: "MIR:00100833"
  sort_score: "1"
  primary: "false"
  forward: "http://sugarbind.expasy.org/${ac}"
  redirect: "http://sugarbind.expasy.org/$id"
  description: "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands."
  subject: "interaction; human; disease"
  location: "Switzerland"
  synonym: "Sequence Initiative Suomi"
  institution: "Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva"
  prefixed: "false"
  test: "lectins/172"
  probe: "http://sugarbind.expasy.org/lectins/172"
  pattern: "^[A-Za-z]+\\/[0-9]+$"
  state: "0:Unknown"
  more: "http://sugarbind.expasy.org/"

rnacentral:
  type: "scheme"
  name: "RNAcentral through EMBL-EBI"
  alias: 
  provider: 
  provider_id: "MIR:00100834"
  sort_score: "2"
  primary: "false"
  forward: "https://rnacentral.org/rna/${ac}"
  redirect: "https://rnacentral.org/rna/$id"
  description: "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases."
  subject: "schema.org"
  location: "UK"
  synonym: "Sequence Initiative Suomi"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "URS0000759CF4"
  probe: "https://rnacentral.org/rna/URS0000759CF4"
  pattern: "^URS[0-9A-F]{10}(\\_\\d+)?$"
  state: "0:Unknown"
  more: "https://rnacentral.org/"

microscope:
  type: "scheme"
  name: "MicroScope"
  alias: 
  provider: 
  provider_id: "MIR:00100836"
  sort_score: "1"
  primary: "false"
  forward: "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=${ac}"
  redirect: "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$id"
  description: "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis."
  subject: "genome; microbial"
  location: "France"
  synonym: "Microbial Genome Annotation & Analysis Platform"
  institution: "Universit&#xE9; &#xC9;vry-Val-d'Essonne, CEA, Institut de G&#xE9;nomique - Genoscope, Laboratoire d'Analyses Bioinformatiques pour la G&#xE9;nomique et le M&#xE9;tabolisme, Evry"
  prefixed: "false"
  test: "5601141"
  probe: "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=5601141"
  pattern: "^\\d+$"
  state: "0:Down"
  more: "http://www.genoscope.cns.fr/agc/microscope"

swissregulon:
  type: "scheme"
  name: "SwissRegulon"
  alias: 
  provider: 
  provider_id: "MIR:00100837"
  sort_score: "1"
  primary: "false"
  forward: "http://swissregulon.unibas.ch/query/${ac}"
  redirect: "http://swissregulon.unibas.ch/query/$id"
  description: "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form."
  subject: 
  location: "Switzerland"
  synonym: "Microbial Genome Annotation & Analysis Platform"
  institution: "Swiss Institute of Bioinformatics"
  prefixed: "false"
  test: "AHR"
  probe: "http://swissregulon.unibas.ch/query/AHR"
  pattern: "^[A-Za-z0-9]+$"
  state: "0:Unknown"
  more: "http://swissregulon.unibas.ch"

validatordb:
  type: "scheme"
  name: "ValidatorDB"
  alias: 
  provider: 
  provider_id: "MIR:00100838"
  sort_score: "1"
  primary: "false"
  forward: "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/${ac}"
  redirect: "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/$id"
  description: "Database of validation results for ligands and non-standard residues in the Protein Data Bank."
  subject: 
  location: "Czech Republic"
  synonym: "Microbial Genome Annotation & Analysis Platform"
  institution: "Central European Institute of Technology"
  prefixed: "false"
  test: "ByStructure/2h6o"
  probe: "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/2h6o"
  pattern: "^[A-Za-z0-9\\/]+$"
  state: "0:Unknown"
  more: "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/"

biominder:
  type: "scheme"
  name: "Bio-MINDER Tissue Database"
  alias: 
  provider: 
  provider_id: "MIR:00100839"
  sort_score: "1"
  primary: "false"
  forward: "https://datalab.rwth-aachen.de/MINDER/resource/${ac}"
  redirect: "https://datalab.rwth-aachen.de/MINDER/resource/$id"
  description: "Database of the dielectric properties of biological tissues."
  subject: 
  location: "Ireland"
  synonym: "Microbial Genome Annotation & Analysis Platform"
  institution: "RWTH Aachen University / NUIG Galway"
  prefixed: "false"
  test: "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3"
  probe: "https://datalab.rwth-aachen.de/MINDER/resource/aef4c195-9cf9-46db-a12a-7cfd1ff3eec3"
  pattern: "^[a-z0-9\\-]+$"
  state: "0:Unknown"
  more: "https://datalab.rwth-aachen.de/MINDER"

neurovault.collection:
  type: "scheme"
  name: "NeuroVault Collection"
  alias: 
  provider: 
  provider_id: "MIR:00100840"
  sort_score: "4"
  primary: "false"
  forward: "https://neurovault.org/collections/${ac}"
  redirect: "https://neurovault.org/collections/$id"
  description: "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images."
  subject: 
  location: "USA"
  synonym: "Microbial Genome Annotation & Analysis Platform"
  institution: "Stanford University"
  prefixed: "false"
  test: "3304"
  probe: "https://neurovault.org/collections/3304"
  pattern: "^[1-9][0-9]*$"
  state: "0:Unknown"
  more: "http://neurovault.org"

vmhmetabolite:
  type: "scheme"
  name: "VMH metabolite"
  alias: 
  provider: 
  provider_id: "MIR:00100841"
  sort_score: "1"
  primary: "false"
  forward: "http://vmh.uni.lu/#metabolite/${ac}"
  redirect: "http://vmh.uni.lu/#metabolite/$id"
  description: "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."
  subject: 
  location: "Luxembourg"
  synonym: "Microbial Genome Annotation & Analysis Platform"
  institution: "Luxembourg Centre for Systems Biomedicine, University of Luxembourg"
  prefixed: "false"
  test: "h2o"
  probe: "http://vmh.uni.lu/#metabolite/h2o"
  pattern: "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+"
  state: "0:Unknown"
  more: "http://vmh.uni.lu"

mobidb:
  type: "scheme"
  name: "MobiDB"
  alias: 
  provider: 
  provider_id: "MIR:00100842"
  sort_score: "1"
  primary: "false"
  forward: "http://mobidb.bio.unipd.it/${ac}"
  redirect: "http://mobidb.bio.unipd.it/$id"
  description: "MobiDB is a database of protein disorder and mobility annotations."
  subject: "schema.org"
  location: "Italy"
  synonym: "Microbial Genome Annotation & Analysis Platform"
  institution: "University of Padua"
  prefixed: "false"
  test: "P10636"
  probe: "http://mobidb.bio.unipd.it/P10636"
  pattern: "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$"
  state: "0:Unknown"
  more: "http://mobidb.bio.unipd.it"

neurovault.image:
  type: "scheme"
  name: "NeuroVault"
  alias: 
  provider: 
  provider_id: "MIR:00100843"
  sort_score: "4"
  primary: "false"
  forward: "https://neurovault.org/images/${ac}"
  redirect: "https://neurovault.org/images/$id"
  description: "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images."
  subject: 
  location: "USA"
  synonym: "Microbial Genome Annotation & Analysis Platform"
  institution: "Stanford University"
  prefixed: "false"
  test: "58788"
  probe: "https://neurovault.org/images/58788"
  pattern: "^[1-9][0-9]*$"
  state: "0:Unknown"
  more: "http://neurovault.org"

nmr:
  type: "scheme"
  name: "NMR through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100844"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$id"
  description: "nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi."
  subject: 
  location: "UK"
  synonym: "nmrCV"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "1000003"
  probe: "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:1000003"
  pattern: "^NMR:\\d+$"
  state: "0:Unknown"
  more: "https://www.ebi.ac.uk/ols/ontologies/nmrcv"

ols/nmr:
  type: "synonym"
  for: "nmr"

vmhreaction:
  type: "scheme"
  name: "VMH reaction"
  alias: 
  provider: 
  provider_id: "MIR:00100845"
  sort_score: "1"
  primary: "false"
  forward: "https://vmh.uni.lu/#reaction/${ac}"
  redirect: "https://vmh.uni.lu/#reaction/$id"
  description: "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."
  subject: 
  location: "Luxembourg"
  synonym: "nmrCV"
  institution: "Luxembourg Centre for Systems Biomedicine, University of Luxembourg"
  prefixed: "false"
  test: "HEX1"
  probe: "https://vmh.uni.lu/#reaction/HEX1"
  pattern: "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+"
  state: "0:Unknown"
  more: "https://vmh.uni.lu"

ascl:
  type: "scheme"
  name: "Astrophysics Source Code Library"
  alias: 
  provider: 
  provider_id: "MIR:00100846"
  sort_score: "4"
  primary: "false"
  forward: "http://ascl.net/${ac}"
  redirect: "http://ascl.net/$id"
  description: "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001)."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "Astrophysics Source Code Library, Houghton, MI"
  prefixed: "false"
  test: "1801.012"
  probe: "http://ascl.net/1801.012"
  pattern: "^[0-9\\.]+$"
  state: "100:Up"
  more: "http://ascl.net/"

facebase:
  type: "scheme"
  name: "FaceBase Data Repository"
  alias: 
  provider: 
  provider_id: "MIR:00100847"
  sort_score: "4"
  primary: "false"
  forward: "https://www.facebase.org/data/record/#1/isa:dataset/accession=${ac}"
  redirect: "https://www.facebase.org/data/record/#1/isa:dataset/accession=$id"
  description: "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "University of Southern California"
  prefixed: "false"
  test: "FB00000917"
  probe: "https://www.facebase.org/data/record/#1/isa:dataset/accession=FB00000917"
  pattern: "^FB\\d{8}$"
  state: "0:Unknown"
  more: "https://www.facebase.org"

gudmap:
  type: "scheme"
  name: "GUDMAP"
  alias: 
  provider: 
  provider_id: "MIR:00100848"
  sort_score: "4"
  primary: "false"
  forward: "https://gudmap.org/id/${ac}"
  redirect: "https://gudmap.org/id/$id"
  description: "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "GenitoUrinary Development Molecular Anatomy Project (GUDMAP) Consortium"
  prefixed: "false"
  test: "Q-2958"
  probe: "https://gudmap.org/id/Q-2958"
  pattern: "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$"
  state: "39:Up"
  more: "http://www.gudmap.org/"

eu89h:
  type: "scheme"
  name: "JRC Data Catalogue"
  alias: 
  provider: 
  provider_id: "MIR:00100849"
  sort_score: "1"
  primary: "false"
  forward: "http://data.europa.eu/89h/${ac}"
  redirect: "http://data.europa.eu/89h/$id"
  description: "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union."
  subject: 
  location: "EU"
  synonym: "nmrCV"
  institution: "European Commission, Joint Research Centre (JRC)"
  prefixed: "false"
  test: "jrc-eurl-ecvam-chemagora"
  probe: "http://data.europa.eu/89h/jrc-eurl-ecvam-chemagora"
  pattern: "^[a-z0-9\\-_]+$"
  state: "99:Up"
  more: "http://data.jrc.ec.europa.eu/"

minid:
  type: "scheme"
  name: "Minimal Identifiers for Transient Data"
  alias: 
  provider: 
  provider_id: "MIR:00100850"
  sort_score: "4"
  primary: "false"
  forward: "http://n2t.net/ark:/57799/${ac}"
  redirect: "http://n2t.net/ark:/57799/$id"
  description: "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "Big Data for Discovery Science Consortium"
  prefixed: "false"
  test: "b97957"
  probe: "http://n2t.net/ark:/57799/b97957"
  pattern: "^[A-Za-z0-9]+$"
  state: "100:Up"
  more: "http://minid.bd2k.org"

mw.study:
  type: "scheme"
  name: "Metabolomics Workbench Study"
  alias: 
  provider: 
  provider_id: "MIR:00100859"
  sort_score: "6"
  primary: "true"
  forward: "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=${ac}"
  redirect: "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$id"
  description: "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "University of California San Diego"
  prefixed: "false"
  test: "ST000900"
  probe: "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=ST000900"
  pattern: "^ST[0-9]{6}$"
  state: "0:Unknown"
  more: "http://www.metabolomicsworkbench.org/"

omicsdi/mw.study:
  type: "scheme"
  name: "Metabolomics Workbench Study through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100860"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/metabolomics_workbench/${ac}"
  redirect: "https://www.omicsdi.org/dataset/metabolomics_workbench/$id"
  description: "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."
  subject: 
  location: "UK"
  synonym: "nmrCV"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "ST000900"
  probe: "https://www.omicsdi.org/dataset/metabolomics_workbench/ST000900"
  pattern: "^ST[0-9]{6}$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

mw.project:
  type: "scheme"
  name: "Metabolomics Workbench Project"
  alias: 
  provider: 
  provider_id: "MIR:00100861"
  sort_score: "6"
  primary: "true"
  forward: "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=${ac}"
  redirect: "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$id"
  description: "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "University of California San Diego"
  prefixed: "false"
  test: "PR000001"
  probe: "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=PR000001"
  pattern: "^PR[0-9]{6}$"
  state: "0:Unknown"
  more: "http://www.metabolomicsworkbench.org/"

mex:
  type: "scheme"
  name: "Metabolome Express"
  alias: 
  provider: 
  provider_id: "MIR:00100862"
  sort_score: "6"
  primary: "true"
  forward: "https://www.metabolome-express.org/datasetview.php?datasetid=${ac}"
  redirect: "https://www.metabolome-express.org/datasetview.php?datasetid=$id"
  description: "A public place to process, interpret and share GC/MS metabolomics datasets."
  subject: 
  location: "Australia"
  synonym: "nmrCV"
  institution: "Australian Research Council Centre of Excellence in Plant Energy Biology"
  prefixed: "false"
  test: "36"
  probe: "https://www.metabolome-express.org/datasetview.php?datasetid=36"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "https://www.metabolome-express.org/"

omicsdi/mex:
  type: "scheme"
  name: "Metabolome Express through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100863"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/metabolome_express/MEX${ac}"
  redirect: "https://www.omicsdi.org/dataset/metabolome_express/MEX$id"
  description: "A public place to process, interpret and share GC/MS metabolomics datasets."
  subject: 
  location: "UK"
  synonym: "nmrCV"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "36"
  probe: "https://www.omicsdi.org/dataset/metabolome_express/MEX36"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

gpmdb:
  type: "scheme"
  name: "GPMDB"
  alias: 
  provider: 
  provider_id: "MIR:00100864"
  sort_score: "6"
  primary: "true"
  forward: "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=${ac}"
  redirect: "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$id"
  description: "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns."
  subject: 
  location: "Canada"
  synonym: "nmrCV"
  institution: "The Global Proteome Machine Organization"
  prefixed: "false"
  test: "GPM32310002988"
  probe: "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32310002988"
  pattern: "^GPM\\d+$"
  state: "0:Unknown"
  more: "http://gpmdb.thegpm.org/"

omicsdi/gpmdb:
  type: "scheme"
  name: "GPMDB through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100865"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/gpmdb/${ac}"
  redirect: "https://www.omicsdi.org/dataset/gpmdb/$id"
  description: "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns."
  subject: 
  location: "UK"
  synonym: "nmrCV"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "GPM32310002988"
  probe: "https://www.omicsdi.org/dataset/gpmdb/GPM32310002988"
  pattern: "^GPM\\d+$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

massive:
  type: "scheme"
  name: "MassIVE"
  alias: 
  provider: 
  provider_id: "MIR:00100866"
  sort_score: "4"
  primary: "false"
  forward: "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=${ac}"
  redirect: "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$id"
  description: "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "University of California, San Diego"
  prefixed: "false"
  test: "MSV000082131"
  probe: "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=MSV000082131"
  pattern: "^MSV\\d+$"
  state: "0:Unknown"
  more: "https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp"

omicsdi/massive:
  type: "scheme"
  name: "MassIVE through OmicsDI"
  alias: 
  provider: "omicsdi"
  provider_id: "MIR:00100867"
  sort_score: "2"
  primary: "false"
  forward: "https://www.omicsdi.org/dataset/massive/${ac}"
  redirect: "https://www.omicsdi.org/dataset/massive/$id"
  description: "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data."
  subject: 
  location: "UK"
  synonym: "nmrCV"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "MSV000082131"
  probe: "https://www.omicsdi.org/dataset/massive/MSV000082131"
  pattern: "^MSV\\d+$"
  state: "0:Unknown"
  more: "https://www.omicsdi.org/"

fplx:
  type: "scheme"
  name: "FPLX through BioPortal"
  alias: 
  provider: "bptl"
  provider_id: "MIR:00100869"
  sort_score: "4"
  primary: "false"
  forward: "http://bioportal.bioontology.org/ontologies/FPLX/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFPLX%23_${ac}"
  redirect: "http://bioportal.bioontology.org/ontologies/FPLX/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFPLX%23_$id"
  description: "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "National Center for Biomedical Ontology, Stanford"
  prefixed: "false"
  test: "RAS"
  probe: "http://bioportal.bioontology.org/ontologies/FPLX/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFPLX%23_RAS"
  pattern: "^[a-zA-Z0-9][A-Za-z0-9_]+$"
  state: "0:Unknown"
  more: "http://bioportal.bioontology.org/ontologies/FPLX/"

bptl/fplx:
  type: "synonym"
  for: "fplx"

aop.events:
  type: "scheme"
  name: "AOPWiki (Key Event)"
  alias: 
  provider: 
  provider_id: "MIR:00100870"
  sort_score: "4"
  primary: "false"
  forward: "https://aopwiki.org/events/${ac}"
  redirect: "https://aopwiki.org/events/$id"
  description: "International repository of Adverse Outcome Pathways."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "European Commision - DG Joint Research Centre and U.S Environmental Protection Agency"
  prefixed: "false"
  test: "3"
  probe: "https://aopwiki.org/events/3"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "https://aopwiki.org/"

aop.relationships:
  type: "scheme"
  name: "AOPWiki (Key Event Relationship)"
  alias: 
  provider: 
  provider_id: "MIR:00100871"
  sort_score: "4"
  primary: "false"
  forward: "https://aopwiki.org/relationships/${ac}"
  redirect: "https://aopwiki.org/relationships/$id"
  description: "International repository of Adverse Outcome Pathways."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "European Commision - DG Joint Research Centre and U.S Environmental Protection Agency"
  prefixed: "false"
  test: "5"
  probe: "https://aopwiki.org/relationships/5"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "https://aopwiki.org/"

aop.stressor:
  type: "scheme"
  name: "AOPWiki (Stressor)"
  alias: 
  provider: 
  provider_id: "MIR:00100872"
  sort_score: "4"
  primary: "false"
  forward: "https://aopwiki.org/stressors/${ac}"
  redirect: "https://aopwiki.org/stressors/$id"
  description: "International repository of Adverse Outcome Pathways."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "European Commision - DG Joint Research Centre and U.S Environmental Protection Agency"
  prefixed: "false"
  test: "9"
  probe: "https://aopwiki.org/stressors/9"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "https://aopwiki.org/"

swh:
  type: "scheme"
  name: "Software Heritage"
  alias: 
  provider: 
  provider_id: "MIR:00100873"
  sort_score: "1"
  primary: "false"
  forward: "https://archive.softwareheritage.org/browse/swh:${ac}"
  redirect: "https://archive.softwareheritage.org/browse/swh:$id"
  description: "Software Heritage is the universal archive of software source code."
  subject: 
  location: "France"
  synonym: "nmrCV"
  institution: "INRIA"
  prefixed: "true"
  test: "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d"
  probe: "https://archive.softwareheritage.org/browse/swh:1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d"
  pattern: "^swh:[1-9]:[a-z][a-z][a-z]:[a-f0-9]+$"
  state: "0:Unknown"
  more: "https://archive.softwareheritage.org"

dev.ga4ghdos:
  type: "scheme"
  name: "Data Object Service"
  alias: 
  provider: 
  provider_id: "MIR:00100874"
  sort_score: "4"
  primary: "false"
  forward: "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/${ac}"
  redirect: "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$id"
  description: "Assists in resolving data across cloud resources."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "University of California"
  prefixed: "false"
  test: "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00"
  probe: "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00"
  pattern: "^[a-zA-Z0-9\\-:#\\.]+$"
  state: "0:Unknown"
  more: "http://github.com/ga4gh/data-object-service-schemas"

complexportal:
  type: "scheme"
  name: "Complex Portal"
  alias: 
  provider: 
  provider_id: "MIR:00100875"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/complexportal/complex/${ac}"
  redirect: "https://www.ebi.ac.uk/complexportal/complex/$id"
  description: "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases."
  subject: 
  location: "UK"
  synonym: "nmrCV"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "CPX-2158"
  probe: "https://www.ebi.ac.uk/complexportal/complex/CPX-2158"
  pattern: "^CPX-[0-9]+$"
  state: "0:Unknown"
  more: "https://www.ebi.ac.uk/complexportal"

comptox:
  type: "scheme"
  name: "CompTox Chemistry Dashboard"
  alias: 
  provider: 
  provider_id: "MIR:00100876"
  sort_score: "4"
  primary: "false"
  forward: "https://comptox.epa.gov/dashboard/${ac}"
  redirect: "https://comptox.epa.gov/dashboard/$id"
  description: "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "Environmental Protection Agency"
  prefixed: "false"
  test: "DTXSID2021028"
  probe: "https://comptox.epa.gov/dashboard/DTXSID2021028"
  pattern: "^DTXSID\\d+$"
  state: "0:Unknown"
  more: "https://comptox.epa.gov/dashboard"

rbk:
  type: "scheme"
  name: "Rebuilding a Kidney"
  alias: 
  provider: 
  provider_id: "MIR:00100877"
  sort_score: "4"
  primary: "false"
  forward: "https://www.rebuildingakidney.org/id/${ac}"
  redirect: "https://www.rebuildingakidney.org/id/$id"
  description: "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function."
  subject: 
  location: "USA"
  synonym: "nmrCV"
  institution: "National Institute Of Diabetes and Digestive and Kidney Diseases (NIDDK)"
  prefixed: "false"
  test: "Q-2958"
  probe: "https://www.rebuildingakidney.org/id/Q-2958"
  pattern: "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$"
  state: "0:Unknown"
  more: "https://www.rebuildingakidney.org/"

oci:
  type: "scheme"
  name: "OpenCitations"
  alias: 
  provider: 
  provider_id: "MIR:00100878"
  sort_score: "1"
  primary: "false"
  forward: "https://w3id.org/oc/oci/${ac}"
  redirect: "https://w3id.org/oc/oci/$id"
  description: "Each OCI (Open Citation Identifier) has a simple structure: oci:number-number, where &#x201C;oci:&#x201D; is the identifier prefix, and is used to identify a citation as a first-class data entitiy - see https://opencitations.wordpress.com/2018/02/19/citations-as-first-class-data-entities-introduction/ for additional information.  OCIs for citations stored within the OpenCitations Corpus are constructed by combining the OpenCitations Corpus local identifiers for the citing and cited bibliographic resources, separating them with a dash. For example, oci:2544384-7295288 is a valid OCI for the citation between two papers stored within the OpenCitations Corpus.  OCIs can also be created for bibliographic resources described in an external bibliographic database, if they are similarly identified there by identifiers having a unique numerical part. For example, the OCI for the citation that exists between Wikidata resources Q27931310 and Q22252312 is oci:01027931310&#x2013;01022252312.  OCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings."
  subject: 
  location: "Italy"
  synonym: "Open Citation Identifier"
  institution: "University of Bologna"
  prefixed: "false"
  test: "1-18"
  probe: "https://w3id.org/oc/oci/1-18"
  pattern: "^[0-9]+-[0-9]+$"
  state: "48:Down"
  more: "http://opencitations.net"

foodon:
  type: "scheme"
  name: "FoodOn Food Ontology through OLS"
  alias: 
  provider: "ebi"
  provider_id: "MIR:00100879"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:$id"
  description: "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies."
  subject: 
  location: "UK"
  synonym: "Open Citation Identifier"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "true"
  test: "03307879"
  probe: "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:03307879"
  pattern: "^FOODON:[0-9]{8}$"
  state: "0:Unknown"
  more: "https://foodon.org"

ebi/foodon:
  type: "synonym"
  for: "foodon"

encode:
  type: "scheme"
  name: "ENCODE: Encyclopedia of DNA Elements"
  alias: 
  provider: 
  provider_id: "MIR:00100880"
  sort_score: "4"
  primary: "false"
  forward: "https://www.encodeproject.org/${ac}"
  redirect: "https://www.encodeproject.org/$id"
  description: "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "ENCODE Consortium"
  prefixed: "false"
  test: "ENCSR163RYW"
  probe: "https://www.encodeproject.org/ENCSR163RYW"
  pattern: "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$"
  state: "0:Unknown"
  more: "www.encodeproject.org"

gtex:
  type: "scheme"
  name: "The GTEx Project"
  alias: 
  provider: 
  provider_id: "MIR:00100881"
  sort_score: "4"
  primary: "false"
  forward: "https://www.gtexportal.org/home/gene/${ac}"
  redirect: "https://www.gtexportal.org/home/gene/$id"
  description: "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation. "
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "The Broad Institute of MIT and Harvard"
  prefixed: "false"
  test: "BRIP1"
  probe: "https://www.gtexportal.org/home/gene/BRIP1"
  pattern: "^\\w.+$"
  state: "0:Unknown"
  more: "https://www.gtexportal.org"

ricenetdb.gene:
  type: "scheme"
  name: "RiceNetDB"
  alias: 
  provider: 
  provider_id: "MIR:00100882"
  sort_score: "1"
  primary: "false"
  forward: "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=${ac}"
  redirect: "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$id"
  description: "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."
  subject: 
  location: "China"
  synonym: "Open Citation Identifier"
  institution: "College of Life Sciences, Zhejiang University"
  prefixed: "false"
  test: "LOC_Os01g49190.1"
  probe: "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=LOC_Os01g49190.1"
  pattern: "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$"
  state: "0:Unknown"
  more: "http://bis.zju.edu.cn/ricenetdb/"

ricenetdb.protein:
  type: "scheme"
  name: "RiceNetDB"
  alias: 
  provider: 
  provider_id: "MIR:00100883"
  sort_score: "1"
  primary: "false"
  forward: "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=${ac}"
  redirect: "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$id"
  description: "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."
  subject: 
  location: "China"
  synonym: "Open Citation Identifier"
  institution: "College of Life Sciences, Zhejiang University"
  prefixed: "false"
  test: "LOC_Os01g49190"
  probe: "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=LOC_Os01g49190"
  pattern: "^LOC\\_Os\\d{1,2}g\\d{5}$"
  state: "0:Unknown"
  more: "http://bis.zju.edu.cn/ricenetdb/"

ricenetdb.compound:
  type: "scheme"
  name: "RiceNetDB Compound"
  alias: 
  provider: 
  provider_id: "MIR:00100884"
  sort_score: "1"
  primary: "false"
  forward: "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=${ac}"
  redirect: "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$id"
  description: "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."
  subject: 
  location: "China"
  synonym: "Open Citation Identifier"
  institution: "College of Life Sciences, Zhejiang University"
  prefixed: "false"
  test: "OSC1416"
  probe: "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=OSC1416"
  pattern: "^OSC\\d{4}$"
  state: "0:Unknown"
  more: "http://bis.zju.edu.cn/ricenetdb"

ricenetdb.reaction:
  type: "scheme"
  name: "RiceNetDB Reaction"
  alias: 
  provider: 
  provider_id: "MIR:00100885"
  sort_score: "1"
  primary: "false"
  forward: "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=${ac}"
  redirect: "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$id"
  description: "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."
  subject: 
  location: "China"
  synonym: "Open Citation Identifier"
  institution: "College of Life Sciences, Zhejiang University"
  prefixed: "false"
  test: "OSR0818"
  probe: "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=OSR0818"
  pattern: "^OSR\\d{4}$"
  state: "0:Unknown"
  more: "http://bis.zju.edu.cn/ricenetdb"

ricenetdb.mirna:
  type: "scheme"
  name: "RiceNetDB miRNA"
  alias: 
  provider: 
  provider_id: "MIR:00100886"
  sort_score: "1"
  primary: "false"
  forward: "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=${ac}"
  redirect: "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$id"
  description: "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."
  subject: 
  location: "China"
  synonym: "Open Citation Identifier"
  institution: "College of Life Sciences, Zhejiang University"
  prefixed: "false"
  test: "osa-miR446"
  probe: "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=osa-miR446"
  pattern: "^osa-miR\\d{3,5}[a-z]{0,1}$"
  state: "0:Unknown"
  more: "http://bis.zju.edu.cn/ricenetdb"

oclc:
  type: "scheme"
  name: "Online Computer Library Center (OCLC) WorldCat"
  alias: 
  provider: 
  provider_id: "MIR:00100887"
  sort_score: "4"
  primary: "false"
  forward: "https://www.worldcat.org/oclc/${ac}"
  redirect: "https://www.worldcat.org/oclc/$id"
  description: "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "Online Computer Library Center (OCLC), Dublin, Ohio"
  prefixed: "false"
  test: "634515043"
  probe: "https://www.worldcat.org/oclc/634515043"
  pattern: "^[0-9]+$"
  state: "0:Unknown"
  more: "https://www.oclc.org/en/about.html"

asin:
  type: "scheme"
  name: "Amazon Standard Identification Number (ASIN)"
  alias: 
  provider: 
  provider_id: "MIR:00100888"
  sort_score: "4"
  primary: "false"
  forward: "https://amzn.com/${ac}"
  redirect: "https://amzn.com/$id"
  description: "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "Amazon"
  prefixed: "false"
  test: "0471491039"
  probe: "https://amzn.com/0471491039"
  pattern: "^[0-9]{10}$"
  state: "0:Unknown"
  more: "https://www.amazon.co.uk/gp/help/customer/display.html/277-3416785-8259466?ie=UTF8&nodeId=898182"

ga4ghdos:
  type: "scheme"
  name: "Data Object Service"
  alias: 
  provider: 
  provider_id: "MIR:00100895"
  sort_score: "4"
  primary: "false"
  forward: "https://dataguids.org/ga4gh/dos/v1/dataobjects/${ac}"
  redirect: "https://dataguids.org/ga4gh/dos/v1/dataobjects/$id"
  description: "Assists in resolving data across cloud resources."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "University of California"
  prefixed: "false"
  test: "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d"
  probe: "https://dataguids.org/ga4gh/dos/v1/dataobjects/dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d"
  pattern: "^[a-zA-Z0-9\\-:#/\\.]+$"
  state: "0:Unknown"
  more: "http://github.com/ga4gh/data-object-service-schemas"

flowrepository:
  type: "scheme"
  name: "FlowRepository"
  alias: 
  provider: 
  provider_id: "MIR:00100896"
  sort_score: "1"
  primary: "false"
  forward: "https://flowrepository.org/id/${ac}"
  redirect: "https://flowrepository.org/id/$id"
  description: "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field."
  subject: 
  location: "Canada"
  synonym: "Open Citation Identifier"
  institution: "Terry Fox Laboratory"
  prefixed: "false"
  test: "FR-FCM-ZYGW"
  probe: "https://flowrepository.org/id/FR-FCM-ZYGW"
  pattern: "^FR\\-FCM\\-\\w{4}$"
  state: "0:Unknown"
  more: "https://flowrepository.org/"

oid:
  type: "scheme"
  name: "OID Repository"
  alias: 
  provider: 
  provider_id: "MIR:00100897"
  sort_score: "4"
  primary: "false"
  forward: "http://www.oid-info.com/cgi-bin/display?oid=${ac}&submit=Display&action=display"
  redirect: "http://www.oid-info.com/cgi-bin/display?oid=$id&submit=Display&action=display"
  description: "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "Orange SA"
  prefixed: "false"
  test: "2.16.840"
  probe: "http://www.oid-info.com/cgi-bin/display?oid=2.16.840&submit=Display&action=display"
  pattern: "^[\\d.]+$"
  state: "0:Unknown"
  more: "http://www.oid-info.com/introduction.htm"

hpscreg:
  type: "scheme"
  name: "Human Pluripotent Stem Cell Registry"
  alias: 
  provider: 
  provider_id: "MIR:00100898"
  sort_score: "1"
  primary: "false"
  forward: "https://hpscreg.eu/cell-line/${ac}"
  redirect: "https://hpscreg.eu/cell-line/$id"
  description: "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines)."
  subject: 
  location: "Germany"
  synonym: "Open Citation Identifier"
  institution: "Charit&#xE9; Berlin"
  prefixed: "false"
  test: "BCRTi001-A"
  probe: "https://hpscreg.eu/cell-line/BCRTi001-A"
  pattern: "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$"
  state: "0:Unknown"
  more: "https://hpscreg.eu/"

addgene:
  type: "scheme"
  name: "Addgene Plasmid Repository"
  alias: 
  provider: 
  provider_id: "MIR:00100899"
  sort_score: "4"
  primary: "false"
  forward: "http://addgene.org/${ac}"
  redirect: "http://addgene.org/$id"
  description: "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "Addgene"
  prefixed: "false"
  test: "50943"
  probe: "http://addgene.org/50943"
  pattern: "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$"
  state: "0:Unknown"
  more: "http://addgene.org/"

bacdive:
  type: "scheme"
  name: "Bacterial Diversity Metadatabase"
  alias: 
  provider: 
  provider_id: "MIR:00100900"
  sort_score: "1"
  primary: "false"
  forward: "https://bacdive.dsmz.de/strain/${ac}"
  redirect: "https://bacdive.dsmz.de/strain/$id"
  description: "BacDive&#x2014;the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity."
  subject: 
  location: "Germany"
  synonym: "Open Citation Identifier"
  institution: "Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen"
  prefixed: "false"
  test: "131392"
  probe: "https://bacdive.dsmz.de/strain/131392"
  pattern: "^[0-9]+$"
  state: "0:Unknown"
  more: "https://bacdive.dsmz.de/"

ido:
  type: "scheme"
  name: "IDO through OLS"
  alias: 
  provider: "ols"
  provider_id: "MIR:00100907"
  sort_score: "2"
  primary: "false"
  forward: "https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:${ac}"
  redirect: "https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:$id"
  description: "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases."
  subject: 
  location: "UK"
  synonym: "Open Citation Identifier"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "0000504"
  probe: "https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:0000504"
  pattern: "^[0-9]+$"
  state: "0:Unknown"
  more: "https://www.ebi.ac.uk/ols/ontologies/ido"

ols/ido:
  type: "synonym"
  for: "ido"

gdsc:
  type: "scheme"
  name: "Genomics of Drug Sensitivity in Cancer"
  alias: 
  provider: 
  provider_id: "MIR:00100908"
  sort_score: "4"
  primary: "false"
  forward: "https://www.cancerrxgene.org/translation/Drug/${ac}"
  redirect: "https://www.cancerrxgene.org/translation/Drug/$id"
  description: "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies."
  subject: 
  location: "UK and USA"
  synonym: "Open Citation Identifier"
  institution: "Wellcome Sanger Institute and the Center for Molecular Therapeutics and Massachusetts General Hospital Cancer Center"
  prefixed: "false"
  test: "1242"
  probe: "https://www.cancerrxgene.org/translation/Drug/1242"
  pattern: "^[0-9]+$"
  state: "0:Unknown"
  more: "https://www.cancerrxgene.org"

cbioportal:
  type: "scheme"
  name: "The cBioPortal for Cancer Genomics"
  alias: 
  provider: 
  provider_id: "MIR:00100909"
  sort_score: "4"
  primary: "false"
  forward: "http://www.cbioportal.org/study?id=${ac}#summary"
  redirect: "http://www.cbioportal.org/study?id=$id#summary"
  description: "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "Memorial Sloan Kettering Cancer Center"
  prefixed: "false"
  test: "laml_tcga_pub"
  probe: "http://www.cbioportal.org/study?id=laml_tcga_pub#summary"
  pattern: "^[a-z0-9\\_]+$"
  state: "0:Unknown"
  more: "http://www.cbioportal.org"

vfb:
  type: "scheme"
  name: "Virtual Fly Brain"
  alias: 
  provider: 
  provider_id: "MIR:00100911"
  sort_score: "6"
  primary: "true"
  forward: "http://virtualflybrain.org/reports/${ac}"
  redirect: "http://virtualflybrain.org/reports/$id"
  description: "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster."
  subject: 
  location: "UK"
  synonym: "Open Citation Identifier"
  institution: "The University of Cambridge"
  prefixed: "false"
  test: "00000001"
  probe: "http://virtualflybrain.org/reports/00000001"
  pattern: "^[0-9a-zA-Z]{8}$"
  state: "0:Unknown"
  more: "https://VirtualFlyBrain.org"

ligandbook:
  type: "scheme"
  name: "LigandBook"
  alias: 
  provider: 
  provider_id: "MIR:00100912"
  sort_score: "6"
  primary: "true"
  forward: "https://ligandbook.org/package/${ac}"
  redirect: "https://ligandbook.org/package/$id"
  description: "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community."
  subject: 
  location: "France"
  synonym: "Open Citation Identifier"
  institution: "Institut de Chimie des Substances Naturelles"
  prefixed: "false"
  test: "785"
  probe: "https://ligandbook.org/package/785"
  pattern: "^[0-9]+$"
  state: "0:Unknown"
  more: "https://ligandbook.org/"

kaggle:
  type: "scheme"
  name: "Kaggle"
  alias: 
  provider: 
  provider_id: "MIR:00100913"
  sort_score: "6"
  primary: "true"
  forward: "https://www.kaggle.com/${ac}"
  redirect: "https://www.kaggle.com/$id"
  description: "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "Google LLC"
  prefixed: "false"
  test: "nasa/kepler-exoplanet-search-results"
  probe: "https://www.kaggle.com/nasa/kepler-exoplanet-search-results"
  pattern: "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$"
  state: "0:Unknown"
  more: "https://kaggle.com"

idoo:
  type: "scheme"
  name: "Identifiers.org Ontology"
  alias: 
  provider: 
  provider_id: "MIR:00100914"
  sort_score: "6"
  primary: "true"
  forward: "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#${ac}"
  redirect: "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$id"
  description: "Identifiers.org Ontology"
  subject: 
  location: "UK"
  synonym: "Open Citation Identifier"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "DataCollection"
  probe: "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#DataCollection"
  pattern: "^[0-9a-zA-Z]+$"
  state: "0:Unknown"
  more: "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology"

isni:
  type: "scheme"
  name: "International Standard Name Identifier"
  alias: 
  provider: 
  provider_id: "MIR:00100915"
  sort_score: "6"
  primary: "true"
  forward: "http://www.isni.org/isni/${ac}"
  redirect: "http://www.isni.org/isni/$id"
  description: "ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.  The mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described."
  subject: 
  location: "UK"
  synonym: "Open Citation Identifier"
  institution: "ISNI International Authority"
  prefixed: "false"
  test: "000000012281955X"
  probe: "http://www.isni.org/isni/000000012281955X"
  pattern: "^[0-9]{15}[0-9X]{1}$"
  state: "0:Unknown"
  more: "http://www.isni.org"

viaf:
  type: "scheme"
  name: "Virtual International Authority File"
  alias: 
  provider: 
  provider_id: "MIR:00100916"
  sort_score: "6"
  primary: "true"
  forward: "http://viaf.org/viaf/${ac}"
  redirect: "http://viaf.org/viaf/$id"
  description: "The VIAF&#xAE; (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web."
  subject: 
  location: "US"
  synonym: "Open Citation Identifier"
  institution: "Online Computer Library Center, Incorporated, Dublin, Ohio"
  prefixed: "false"
  test: "75121530"
  probe: "http://viaf.org/viaf/75121530"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://viaf.org"

lei:
  type: "scheme"
  name: "Global LEI Index"
  alias: 
  provider: 
  provider_id: "MIR:00100917"
  sort_score: "6"
  primary: "true"
  forward: "https://www.gleif.org/lei/${ac}"
  redirect: "https://www.gleif.org/lei/$id"
  description: "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland."
  subject: 
  location: "Switzerland"
  synonym: "Open Citation Identifier"
  institution: "Global Legal Entity Identifier Foundation, St. Alban-Vorstadt 5, 4052 Basel"
  prefixed: "false"
  test: "HWUPKR0MPOU8FGXBT394"
  probe: "https://www.gleif.org/lei/HWUPKR0MPOU8FGXBT394"
  pattern: "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$"
  state: "0:Unknown"
  more: "https://www.gleif.org/"

spdx:
  type: "scheme"
  name: "SPDX License List"
  alias: 
  provider: 
  provider_id: "MIR:00100918"
  sort_score: "6"
  primary: "true"
  forward: "https://spdx.org/licenses/${ac}"
  redirect: "https://spdx.org/licenses/$id"
  description: "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception."
  subject: 
  location: "US"
  synonym: "Open Citation Identifier"
  institution: "SPDX Workgroup a Linux Foundation Project"
  prefixed: "false"
  test: "CC-BY-1.0"
  probe: "https://spdx.org/licenses/CC-BY-1.0"
  pattern: "^[0-9A-Za-z\\-.]+$"
  state: "0:Unknown"
  more: "https://spdx.org"

sabiork.compound:
  type: "scheme"
  name: "SABIO-RK Compound"
  alias: 
  provider: 
  provider_id: "MIR:00100919"
  sort_score: "6"
  primary: "true"
  forward: "http://sabiork.h-its.org/newSearch?q=${ac}"
  redirect: "http://sabiork.h-its.org/newSearch?q=$id"
  description: "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information."
  subject: 
  location: "Germany"
  synonym: "Open Citation Identifier"
  institution: "Heidelberg Institute for Theoretical Studies (HITS gGmbH)"
  prefixed: "false"
  test: "75"
  probe: "http://sabiork.h-its.org/newSearch?q=75"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://sabiork.h-its.org/"

oryzabase.reference:
  type: "scheme"
  name: "Oryzabase"
  alias: 
  provider: 
  provider_id: "MIR:00100920"
  sort_score: "6"
  primary: "true"
  forward: "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/${ac}"
  redirect: "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$id"
  description: "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan."
  subject: 
  location: "Japan"
  synonym: "Open Citation Identifier"
  institution: "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka"
  prefixed: "false"
  test: "42840"
  probe: "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/42840"
  pattern: "^\\d+$"
  state: "0:Unknown"
  more: "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/"

peptideatlas.dataset:
  type: "scheme"
  name: "PeptideAtlas Dataset"
  alias: 
  provider: 
  provider_id: "MIR:00100921"
  sort_score: "6"
  primary: "true"
  forward: "http://www.peptideatlas.org/PASS/${ac}"
  redirect: "http://www.peptideatlas.org/PASS/$id"
  description: "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "Institute for Systems Biology, Seattle"
  prefixed: "false"
  test: "PASS01237"
  probe: "http://www.peptideatlas.org/PASS/PASS01237"
  pattern: "^PASS\\d{5}$"
  state: "0:Unknown"
  more: "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary"

did:
  type: "scheme"
  name: "Decentralized Identifiers (DIDs)"
  alias: 
  provider: 
  provider_id: "MIR:00100922"
  sort_score: "6"
  primary: "true"
  forward: "https://uniresolver.io/#did:${ac}"
  redirect: "https://uniresolver.io/#did:$id"
  description: "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "W3C Credentials Community Group"
  prefixed: "true"
  test: "sov:WRfXPg8dantKVubE3HX8pw"
  probe: "https://uniresolver.io/#did:sov:WRfXPg8dantKVubE3HX8pw"
  pattern: "^did:[a-z0-9]+:[A-Za-z0-9.\\-:]+$"
  state: "0:Unknown"
  more: "https://w3c-ccg.github.io/did-spec/"

seed.reaction:
  type: "scheme"
  name: "SEED Reactions"
  alias: 
  provider: 
  provider_id: "MIR:00100923"
  sort_score: "6"
  primary: "true"
  forward: "http://modelseed.org/biochem/reactions/${ac}"
  redirect: "http://modelseed.org/biochem/reactions/$id"
  description: "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "Argonne National Laboratory, University of Chicago, Argonne, Illinois"
  prefixed: "false"
  test: "rxn00001"
  probe: "http://modelseed.org/biochem/reactions/rxn00001"
  pattern: "^rxn\\d+$"
  state: "0:Unknown"
  more: "http://modelseed.org/biochem/reactions/"

occ:
  type: "scheme"
  name: "OpenCitations Corpus"
  alias: 
  provider: 
  provider_id: "MIR:00100925"
  sort_score: "6"
  primary: "true"
  forward: "https://w3id.org/oc/corpus/${ac}"
  redirect: "https://w3id.org/oc/corpus/$id"
  description: "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law."
  subject: 
  location: "Italy"
  synonym: "Open Citation Identifier"
  institution: "OpenCitations"
  prefixed: "false"
  test: "br/1"
  probe: "https://w3id.org/oc/corpus/br/1"
  pattern: "^[a-z][a-z]/[0-9]+$"
  state: "0:Unknown"
  more: "https://w3id.org/oc/corpus"

biostudies:
  type: "scheme"
  name: "BioStudies database"
  alias: 
  provider: "ebi"
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  sort_score: "6"
  primary: "true"
  forward: "https://www.ebi.ac.uk/biostudies/studies/${ac}"
  redirect: "https://www.ebi.ac.uk/biostudies/studies/$id"
  description: "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication."
  subject: 
  location: "UK"
  synonym: "Open Citation Identifier"
  institution: "European Bioinformatics Institute, Hinxton, Cambridge"
  prefixed: "false"
  test: "S-EPMC6266652"
  probe: "https://www.ebi.ac.uk/biostudies/studies/S-EPMC6266652"
  pattern: "^S-[A-Z]{4}[A-Z\\d\\-]+$"
  state: "0:Unknown"
  more: "https://www.ebi.ac.uk/biostudies/"

ebi/biostudies:
  type: "synonym"
  for: "biostudies"

cadsr:
  type: "scheme"
  name: "Cancer Data Standards Registry and Repository"
  alias: 
  provider: 
  provider_id: "MIR:00100928"
  sort_score: "6"
  primary: "true"
  forward: "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=${ac}]"
  redirect: "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$id]"
  description: "The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR."
  subject: 
  location: "USA"
  synonym: "Open Citation Identifier"
  institution: "National Cancer Institute, National Institutes of Health, Bethesda, MD"
  prefixed: "false"
  test: "3771992"
  probe: "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=3771992]"
  pattern: "^[0-9]*$"
  state: "0:Unknown"
  more: "https://wiki.nci.nih.gov/display/caDSR/caDSR+Wiki"

gcst:
  type: "scheme"
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  alias: 
  provider: 
  provider_id: "MIR:00000775"
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  primary: "true"
  forward: "https://www.ebi.ac.uk/gwas/studies/${ac}"
  redirect: "https://www.ebi.ac.uk/gwas/studies/$id"
  description: "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide."
  subject: 
  location: "UK"
  synonym: "Open Citation Identifier"
  institution: "European Bioinformatics Institute"
  prefixed: "false"
  test: "GCST000035"
  probe: "https://www.ebi.ac.uk/gwas/studies/GCST000035"
  pattern: "^GCST\\d{6}$"
  state: "0:Unknown"
  more: "https://www.ebi.ac.uk/gwas/studies"

erm:
  type: "scheme"
  name: "European Registry of Materials"
  alias: 
  provider: 
  provider_id: "MIR:00000711"
  sort_score: "6"
  primary: "true"
  forward: "https://nanocommons.github.io/identifiers/registry#${ac}"
  redirect: "https://nanocommons.github.io/identifiers/registry#$id"
  description: "The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project."
  subject: 
  location: "US"
  synonym: "Open Citation Identifier"
  institution: "NanoCommons"
  prefixed: "false"
  test: "ERM00000044"
  probe: "https://nanocommons.github.io/identifiers/registry#ERM00000044"
  pattern: "^ERM[0-9]{8}$"
  state: "0:Unknown"
  more: "https://nanocommons.github.io/identifiers/"

2dbaseecoli:
  type: "commonspfx"
  redirect: "http://2dbase.techfak.uni-bielefeld.de/cgi-bin/2d/2d.cgi?ac=$id"

3dgenomics:
  type: "commonspfx"
  redirect: "N/A"

3did:
  type: "commonspfx"
  redirect: "http://3did.irbbarcelona.org/cgi-bin/query_domain_cgi.pl?domain=$id"

3dinterologs:
  type: "commonspfx"
  redirect: "N/A"

3drmm:
  type: "commonspfx"
  redirect: "N/A"

4dxpress:
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  redirect: "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$id"

5sage:
  type: "commonspfx"
  redirect: "N/A"

5srna:
  type: "commonspfx"
  redirect: "N/A"

aa:
  type: "commonspfx"

aaindex:
  type: "commonspfx"
  redirect: "http://www.genome.jp/dbget-bin/www_bget?aaindex:$id"

aao:
  type: "commonspfx"
  redirect: "N/A"

aba:
  type: "commonspfx"

abbrev:
  type: "commonspfx"

abcdb:
  type: "commonspfx"

acedb:
  type: "commonspfx"
  redirect: "N/A"

acgt:
  type: "commonspfx"

aclame:
  type: "commonspfx"
  redirect: "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=$id"

acs:
  type: "commonspfx"

activity:
  type: "commonspfx"

adda:
  type: "commonspfx"
  redirect: "http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb/report_sequence?nid=$id"

adhdgene:
  type: "commonspfx"

aeo:
  type: "commonspfx"

aero:
  type: "commonspfx"

affindb:
  type: "commonspfx"
  redirect: "N/A"

affymetrix:
  type: "commonspfx"

aftol:
  type: "commonspfx"
  redirect: "N/A"

agbase:
  type: "commonspfx"
  redirect: "http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB&gb_acc=$id"

agd:
  type: "commonspfx"
  redirect: "http://agd.vital-it.ch/Ashbya_gossypii/geneview?gene=$id"

agns:
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agricola.bib:
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agricola.id:
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agricola.nal:
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agris:
  type: "commonspfx"
  redirect: "N/A"

agsd:
  type: "commonspfx"
  redirect: "http://www.genomesize.com/result_species.php?id=$id"

ahd:
  type: "commonspfx"
  redirect: "N/A"

ahdb:
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ahfs:
  type: "commonspfx"

ai.rheum:
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airs:
  type: "commonspfx"
  redirect: "N/A"

alfred:
  type: "commonspfx"
  redirect: "http://alfred.med.yale.edu/alfred/recordinfo.asp?condition=loci.locus_uid='$id"

allfuse:
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alpsbase:
  type: "commonspfx"

alterorf:
  type: "commonspfx"
  redirect: "http://www.alterorf.cl/SearchResults/SearchResult.aspx?variable1=$id"

alzgene:
  type: "commonspfx"
  redirect: "http://www.alzgene.org/geneoverview.asp?geneid=$id"

amaze:
  type: "commonspfx"

ampd:
  type: "commonspfx"
  redirect: "N/A"

animalqtldb:
  type: "commonspfx"
  redirect: "N/A"

animaltfdb:
  type: "commonspfx"

anobase:
  type: "commonspfx"
  redirect: "http://www.anobase.org/genetool/v42/gene.php?id=$id"

anpd:
  type: "commonspfx"

antijen:
  type: "commonspfx"
  redirect: "http://www.darrenflower.info/scripts/aj_scripts/aj_mhccalc2.pl?epitope=$id&AL=%25&ST=%25&CAT=MHC&detailinfo=no&detailmin=&detailmax="

anu2dpage:
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aobase:
  type: "commonspfx"

aogacioah:
  type: "commonspfx"
  redirect: "http://atlasgeneticsoncology.org/Genes/$id.html"

aphidbase:
  type: "commonspfx"
  redirect: "http://helico.genouest.org:8080/grs-1.8/grs?reportID=chado_[transcript/genome/protein]_report&objectID=$id"

apid:
  type: "commonspfx"
  redirect: "N/A"

apidots:
  type: "commonspfx"

apo:
  type: "commonspfx"

apollo.sv:
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appadb:
  type: "commonspfx"

aptamerdb:
  type: "commonspfx"
  redirect: "N/A"

arabidopsis_mpss:
  type: "commonspfx"
  redirect: "N/A"

arabidopsis_reactome:
  type: "commonspfx"

aracxyls:
  type: "commonspfx"
  redirect: "http://www.eez.csic.es/arac-xyls/wfichas/$idrec.htm"

aracyc:
  type: "commonspfx"
  redirect: "N/A"

aramemnon:
  type: "commonspfx"
  redirect: "N/A"

archdb:
  type: "commonspfx"
  redirect: "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$id"

ared:
  type: "commonspfx"

argmd:
  type: "commonspfx"
  redirect: "N/A"

argonaute:
  type: "commonspfx"
  redirect: "N/A"

arkdb:
  type: "commonspfx"
  redirect: "http://www.thearkdb.org/arkdb/do/getMappableDetails?accession=$id"

artadedb:
  type: "commonspfx"
  redirect: "http://omicspace.riken.jp/gps/index.html?url=/gps/LineMode/ArtadeSearch_Flower&hCheck=v200307&hHead=[?genomic_region]&highlight=$id"

asalps:
  type: "commonspfx"
  redirect: "http://as-alps.nagahama-i-bio.ac.jp/search.php?sp=hs&switch=cluster&id_type=transcript&id=$id"

asap_ii:
  type: "commonspfx"
  redirect: "N/A"

asc:
  type: "commonspfx"
  redirect: "N/A"

asd:
  type: "commonspfx"
  redirect: "N/A"

asdb:
  type: "commonspfx"

asedb:
  type: "commonspfx"

ashesdb:
  type: "commonspfx"

aspd:
  type: "commonspfx"
  redirect: "N/A"

aspergillus_genomes:
  type: "commonspfx"
  redirect: "N/A"

aspgd:
  type: "commonspfx"
  redirect: "http://www.aspergillusgenome.org/cgi-bin/locus.pl?locus=[?id]"

asrp:
  type: "commonspfx"
  redirect: "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$id"

astd:
  type: "commonspfx"
  redirect: "http://www.ebi.ac.uk/astd/geneview.html?acc=$id"

astral:
  type: "commonspfx"
  redirect: "N/A"

atcc.dna:
  type: "commonspfx"

atcc.inhost:
  type: "commonspfx"

atd:
  type: "commonspfx"

atgc:
  type: "commonspfx"

atgdb:
  type: "commonspfx"
  redirect: "N/A"

athamap:
  type: "commonspfx"
  redirect: "N/A"

athena:
  type: "commonspfx"
  redirect: "N/A"

atmo:
  type: "commonspfx"

ato:
  type: "commonspfx"

atpid:
  type: "commonspfx"
  redirect: "http://atpid.biosino.org/simple_detail.php?pro=$id"

attedii:
  type: "commonspfx"
  redirect: "http://atted.jp/data/cis/$id.html"

autopsi:
  type: "commonspfx"
  redirect: "N/A"

autosnpdb:
  type: "commonspfx"
  redirect: "N/A"

axeldb:
  type: "commonspfx"

bac:
  type: "commonspfx"
  redirect: "N/A"

bacmap:
  type: "commonspfx"
  redirect: "http://wishart.biology.ualberta.ca/BacMap/cgview_linked_maps/$id/index.html"

bacteriome:
  type: "commonspfx"
  redirect: "http://www.compsysbio.org/bacteriome/tsdetail.php?cutoff=50&genestr=$id&genenum=0"

bactibase:
  type: "commonspfx"
  redirect: "http://bactibase.pfba-lab-tun.org/$id"

balibase:
  type: "commonspfx"
  redirect: "http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/ref[$ref]/test/$id_ref[$ref].html"

banmoki:
  type: "commonspfx"
  redirect: "N/A"

barleybase:
  type: "commonspfx"
  redirect: "N/A"

bbid:
  type: "commonspfx"
  redirect: "http://bbid.grc.nia.nih.gov/geneimages/$id.jpeg"

bcgo:
  type: "commonspfx"

bcipep:
  type: "commonspfx"
  redirect: "N/A"

bcsdb_glycoscience:
  type: "commonspfx"
  redirect: "N/A"

bdgp:
  type: "commonspfx"
  redirect: "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$id"

bdo:
  type: "commonspfx"

beilstein:
  type: "commonspfx"

benchmark:
  type: "commonspfx"
  redirect: "http://net.icgeb.org/benchmark/index.php?experiment=$id"

bfo:
  type: "commonspfx"

bfo.snap:
  type: "commonspfx"

bfo.span:
  type: "commonspfx"

bged:
  type: "commonspfx"
  redirect: "http://genome.mc.pref.osaka.jp/cgi-bin/BGED/Gene_info.pl?num=$id"

bgee:
  type: "commonspfx"
  redirect: "http://bgee.unil.ch/bgee/bgee?page=gene&action=expression&gene_id=$id"

bgee.genes:
  type: "commonspfx"
  redirect: "http://bgee.unil.ch/bgee/bgee?page=gene&action=expression&gene_id=$id"

bgee.stages:
  type: "commonspfx"
  redirect: "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id="

bgi.ris:
  type: "commonspfx"

bhfucl:
  type: "commonspfx"
  redirect: "N/A"

bho:
  type: "commonspfx"

bid:
  type: "commonspfx"
  redirect: "http://tsailab.org/wikiBID/index.php/$id"

bila.ontology:
  type: "commonspfx"

bind:
  type: "commonspfx"
  redirect: "http://www.bind.ca/Action?identifier=bindid&idsearch=$id"

binding_moad:
  type: "commonspfx"
  redirect: "http://www.bindingmoad.org/moad/getMoadlet.do?id=$id"

bio2rdf:
  type: "commonspfx"

bio2rdf.atlas:
  type: "commonspfx"

bio2rdf.dataset:
  type: "commonspfx"

bioactivityontology:
  type: "commonspfx"

biocarta:
  type: "commonspfx"
  redirect: "N/A"

biocatalogue:
  type: "commonspfx"
  redirect: "http://www.biocatalogue.org/services/$id"

biodbcore:
  type: "commonspfx"

biohealthbase:
  type: "commonspfx"

biomagresbank:
  type: "commonspfx"
  redirect: "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$id"

biomodels:
  type: "commonspfx"
  redirect: "http://www.ebi.ac.uk/biomodels-main/$id"

bionemo:
  type: "commonspfx"
  redirect: "http://bionemo.bioinfo.cnio.es/Run.cgi?rm=mode4&result=$id"

biopath:
  type: "commonspfx"
  redirect: "N/A"

biopax:
  type: "commonspfx"

biopax.l2:
  type: "commonspfx"
  redirect: "http://www.biopax.org/release/biopax-level2.owl#$id"

biopax.l3:
  type: "commonspfx"
  redirect: "http://www.biopax.org/release/biopax-level3.owl#$id"

biopixie:
  type: "commonspfx"
  redirect: "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$id"

bioportal.metadata:
  type: "commonspfx"

biosd:
  type: "commonspfx"

biosilico:
  type: "commonspfx"

biosis:
  type: "commonspfx"

biositemap:
  type: "commonspfx"

biothesaurus:
  type: "commonspfx"
  redirect: "N/A"

biotop:
  type: "commonspfx"

biozon:
  type: "commonspfx"
  redirect: "http://biozon.org/Biozon/Profile/$id"

birnlex:
  type: "commonspfx"

bitterdb:
  type: "commonspfx"

blocks:
  type: "commonspfx"
  redirect: "N/A"

bloodexpress:
  type: "commonspfx"
  redirect: "N/A"

bmph:
  type: "commonspfx"
  redirect: "http://www.expasy.org/cgi-bin/show_image?$id"

bo:
  type: "commonspfx"

bodymap:
  type: "commonspfx"
  redirect: "http://bodymap.ims.u-tokyo.ac.jp/[?human/mouse]/gs_card.php?gs=$id"

bodymapxs:
  type: "commonspfx"
  redirect: "N/A"

bold:
  type: "commonspfx"
  redirect: "http://www.barcodinglife.com/views/taxbrowser.php?taxid=$id"

bootstrep:
  type: "commonspfx"
  redirect: "N/A"

bprc:
  type: "commonspfx"
  redirect: "N/A"

bps:
  type: "commonspfx"
  redirect: "http://bps.rutgers.edu/atlas/bp_record/$id"

brassica_basc:
  type: "commonspfx"

bro:
  type: "commonspfx"

broad.lncrna:
  type: "commonspfx"

broad.tucp:
  type: "commonspfx"

bsd:
  type: "commonspfx"
  redirect: "http://bsd.cme.msu.edu/jsp/InfoController.jsp?object=Strain&id=S_$id"

bsorf:
  type: "commonspfx"
  redirect: "http://bacillus.genome.jp/cgi-bin/BSORF_data_view.pl?ACCESSION=$id"

bspo:
  type: "commonspfx"

btkbase:
  type: "commonspfx"
  redirect: "N/A"

buchnerabase:
  type: "commonspfx"
  redirect: "http://www.york.ac.uk/res/thomas/Buchnerabase/resources/gene_page_aps.cfm?BBnum=$id"

bugsbase:
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burulist:
  type: "commonspfx"
  redirect: "N/A"

butterflybase:
  type: "commonspfx"
  redirect: "N/A"

bva:
  type: "commonspfx"

ca1neuron:
  type: "commonspfx"

cadb:
  type: "commonspfx"
  redirect: "N/A"

cadre:
  type: "commonspfx"

cage:
  type: "commonspfx"

cage.ctss:
  type: "commonspfx"
  redirect: "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryCtss.php?ctss_id=$id"

cage.library:
  type: "commonspfx"
  redirect: "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryLibrary.php?libid=$id"

cage.tc:
  type: "commonspfx"
  redirect: "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryTss.php?tss_id=$id"

cage.tu:
  type: "commonspfx"
  redirect: "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryTu.php?tu_id=$id"

camjedb:
  type: "commonspfx"

cancerchromosomes:
  type: "commonspfx"
  redirect: "N/A"

cancergenes:
  type: "commonspfx"
  redirect: "http://cbio.mskcc.org/Public/products/human_mapped/Mapback_html/$id.html"

canco:
  type: "commonspfx"
  redirect: "http://bioontology.org/ontologies/ResearchArea.owl#COGPO_00021"

candidadb:
  type: "commonspfx"
  redirect: "N/A"

cangem:
  type: "commonspfx"
  redirect: "http://www.cangem.org/index.php?gene=$id"

cansar:
  type: "commonspfx"

cao:
  type: "commonspfx"

carelex:
  type: "commonspfx"

caro:
  type: "commonspfx"
  redirect: "N/A"

carpedb:
  type: "commonspfx"
  redirect: "N/A"

carpedb.gene:
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  redirect: "http://www.carpedb.ua.edu/summary.cfm?id=$id"

carpedb.reference:
  type: "commonspfx"
  redirect: "http://www.carpedb.ua.edu/public.cfm?id=$id"

casgen:
  type: "commonspfx"
  redirect: "N/A"

caspdb:
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casrdb:
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  redirect: "N/A"

casref:
  type: "commonspfx"
  redirect: "N/A"

casspc:
  type: "commonspfx"
  redirect: "N/A"

catdb:
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  redirect: "http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_project.pl?project_id=$id"

catma:
  type: "commonspfx"
  redirect: "N/A"

cbo:
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cbs:
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  redirect: "N/A"

cbsd:
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cc+:
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ccd:
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colibase:
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cops:
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covdb:
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cpo:
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cpro:
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cpt:
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cptac:
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csndb:
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csrd:
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css:
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ctad:
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  redirect: "http://www.cta.lncc.br/modelo.php?idgene=$id&idmeta=11"

ctcae:
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ctdb:
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ctga:
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  redirect: "http://www.cags.org.ae/FMPro?-db=ctga.fp5&-format=/ctga/ctga_detail.html&-lay=main&Record_Category=Gene%20locus&-max=30&-recid=$id&-find="

cto:
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cutg:
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cuticledb:
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  redirect: "N/A"

cyanobase:
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cybase:
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cyclebase:
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  redirect: "http://www.cyclebase.org/displaygene.action?geneName=$id&taxId=[$taxid]"

cyclonet:
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cygd:
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cymobase:
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dali:
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dampdb:
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dart:
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  redirect: "http://xin.cz3.nus.edu.sg/group/DRT/Detail.asp?ID=$id"

datahub:
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dbali:
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  redirect: "N/A"

dbdepc:
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dbergeii:
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dbeth:
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dblep:
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  redirect: "N/A"

dbmhc:
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dbpabp:
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dbptm:
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dbqsnp:
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dbres:
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dbrip:
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  redirect: "N/A"

dbsts:
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dbsubloc:
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ddi:
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dejvu:
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dfd:
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dgcst:
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dictybase:
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dikb:
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dikb.evidence:
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dmdm:
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dogpm:
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dogv:
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doop:
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dopanet:
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dorina:
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dorrs:
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dpd:
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dpr:
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dragondb:
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droid:
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drospege:
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dsdbase:
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dsmm:
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dvp:
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dwc:
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dynamic_proteomics:
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dynaprot_2d:
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ecocyc.enzyme:
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ecocyc.ref:
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ecrbase:
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egiec:
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egl:
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ego:
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ehco:
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ehda:
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ehdaa:
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ehdaa2:
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embl:
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emim:
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emo:
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endonet:
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enzyme:
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eom:
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epitome:
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epo.prt:
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epodb:
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equilibrator:
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erd:
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ergr:
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ero:
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esldb:
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esther:
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estlib:
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eugenes:
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  redirect: "http://eugenes.org:7072/.bin/fbidq.html?$id"

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icd10cm:
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ictm.constitution:
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ictm.factors:
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ictm.signs:
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ipdhpa:
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ipdkir:
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isgd:
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itd:
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  redirect: "N/A"

itfp:
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its2:
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  redirect: "N/A"

iupac:
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iuphar:
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  redirect: "N/A"

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  redirect: "N/A"

ivdb:
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  redirect: "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$id"

ivr:
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  redirect: "N/A"

ixdb:
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ixno:
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jail:
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jaspar:
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  redirect: "N/A"

jcvi:
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  redirect: "N/A"

jcvi.genprop:
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kdbi:
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kdd:
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kegg.brite:
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kegg.ligand:
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  redirect: "N/A"

kibank:
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kinasedb:
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kineticdb:
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king:
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kinomer:
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kisao:
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klotho:
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  redirect: "http://www.biocheminfo.org/klotho/html/$id.html"

kmim:
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  redirect: "N/A"

knottin_database:
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  redirect: "N/A"

l1base:
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lda:
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led:
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  redirect: "N/A"

leger:
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  redirect: "N/A"

legiolist:
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  redirect: "N/A"

legumeip:
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leptolist:
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lhn:
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lifedb:
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  redirect: "N/A"

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linkedspl:
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  redirect: "N/A"

lis:
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  redirect: "N/A"

listilist:
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  redirect: "N/A"

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  redirect: "N/A"

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lola:
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loqate:
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loxdb:
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lsm:
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lspd:
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  redirect: "N/A"

lsr:
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lsr.dataset:
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lumbribase:
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  redirect: "N/A"

m3d:
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machibase:
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  redirect: "N/A"

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mailto:
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malaria:
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malisam:
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mamep:
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mao:
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matrixdb:
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mbgd:
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mbm:
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mcbcc:
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mccl:
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mcv:
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mddb:
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mdpd:
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medgene:
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mediccyc:
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medline:
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megdb:
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mego:
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meo:
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merna:
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metabase:
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metacrop:
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metagrowth:
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metarouter:
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metatiger:
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methdb:
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methycancer:
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metnetdb:
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mgg:
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mgiid:
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mhc:
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mhcpep:
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mi:
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micado:
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micdb:
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microkit:
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microrna:
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mid:
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mimi:
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minas:
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mips:
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mips.funcat:
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mips.plantsdb:
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mir2disease:
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mirecords:
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mirgen:
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miriam:
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mirnamap:
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miro:
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mirortho:
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mist:
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mitochondriome:
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mitodrome:
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mitomap:
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mitome:
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mitominer:
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mitop2:
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mitoproteome:
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mitores:
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mitre:
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mmcd:
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mmd:
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  redirect: "N/A"

mmmp:
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mmo:
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mmsinc:
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mncdb:
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modbase:
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  redirect: "N/A"

modmine:
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modomics:
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mokca:
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molligen:
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molmovdb:
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moped:
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mosdb:
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motifmap:
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mouse_sage:
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mousecyc:
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mpath:
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mpb:
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mpd:
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mpdb:
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mpi:
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mpi.exp:
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mpi.imex:
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mpi.lit:
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mpim:
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mpromdb:
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mrad:
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msd:
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  redirect: "N/A"

mtbd:
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mtbreglist:
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mtdb:
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mthch:
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mtid:
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mulpssm:
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mutdb:
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mvirdb:
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mycopathpd:
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mycoregnet:
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  redirect: "need login"

mypulist:
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narcisse:
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nascarrays:
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natpro:
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natsdb:
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ncir:
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ncrnas_database:
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ndb:
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nddf:
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ndfrt:
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negprot:
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neibank:
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nematodenet:
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nembase:
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  redirect: "http://www.nematodes.org/nembase4/cluster.php?cluster=$id"

nemo:
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neomark:
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neomark3:
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nesbase:
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netbiochem:
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netpath:
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  redirect: "http://www.netpath.org/molecule?molecule_id=$id"

netpro:
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  redirect: "http://www.interactions.net.in/index_molreport.jsp?id=$id"

networkin:
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  redirect: "N/A"

neumore:
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newtomics:
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nextbio:
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  redirect: "http://www.nextbio.com/b/search/ov/$id"

ngsdd:
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  redirect: "N/A"

nic:
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nif:
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nif.agency:
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nif.backend:
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nif.cell:
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nif.dysfunction:
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nif.grossanatomy:
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nif.investigation:
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nif.molecule:
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nif.subcellular:
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nigo:
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nih.healthindicators:
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nikkaji:
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nistchemistrywebbook:
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nlsdb:
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nmpdb:
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nmpdr:
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noncode:
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  redirect: "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$id"

nonrctontology:
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nopdb:
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  redirect: "no search"

npcg:
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npd:
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  redirect: "http://npd.hgu.mrc.ac.uk/user/$id"

npinter:
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npo:
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nprd:
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  redirect: "http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-id+1JCHQ1bgqkg+-lib+$id"

nred:
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nrestdb:
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  redirect: "N/A"

nrr:
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  redirect: "N/A"

nrsub:
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  redirect: "no search"

ntdb:
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  redirect: "http://ntdb.chem.cuhk.edu.hk/data/$id.htm"

nuccore:
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nucleardb:
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  redirect: "http://www.receptors.org/NR/seq/DR/$id.html"

nurebase:
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nursa:
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  redirect: "http://www.nursa.org/molecule.cfm?molType=[?molecule_type]&molId=$id"

nvg:
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  redirect: "N/A"

oae:
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obiws:
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obo:
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obo.owl:
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oboe:
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oboe.sbc:
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obrc:
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  redirect: "N/A"

ocre:
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odb:
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  redirect: "http://www.genome.sk.ritsumei.ac.jp/odb/odb2.rb?org=[?species]&genome_id=[?genome_id]&genes=$id"

odgi:
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offsides:
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ogd:
  type: "commonspfx"
  redirect: "http://www.oomycete.org/ogd/sequence.html?sequence_id=$id"

ogee:
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ogi:
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oglycbase:
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  redirect: "N/A"

ogmd:
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ogms:
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  redirect: "N/A"

ogp:
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  redirect: "N/A"

ogr:
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ogre:
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  redirect: "http://drake.mcmaster.ca/cgi-bin/ogre/featurelist.pl?genome=$id"

okcam:
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  redirect: "http://okcam.cbi.pku.edu.cn/entry-info.php?id=$id"

oligoarraydb:
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oma:
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  redirect: "http://www.omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$id"

omim:
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  redirect: "http://www.ncbi.nlm.nih.gov/omim/$id"

omim.ontology:
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omrse:
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omv:
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oncodbhcc:
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  redirect: "N/A"

oncomine:
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  redirect: "need login"

ontodm:
  type: "commonspfx"

ontodm-kdd:
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  redirect:  "The ontology was first developed under the OntoDM (Ontology of Data Mining is available at http://kt.ijs.si/panovp/OntoDM) ontology, but for generality and reuse purpose it was decided to export it as a separate ontology. Additionaly, the OntoDT ontology is based on and ISO/IEC 11404 (http://www.iso.org/iso/catalogue_detail.htm?csnumber=39479) standard and can be reused used independently by any domain ontology that requires representation and reasoning about general purpose datatypes."

ontodt:
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ontologia:
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ontoma:
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ontoorpha:
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ooevv:
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ootfd:
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  redirect: "N/A"

opd:
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operondb:
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  redirect: "http://operondb.cbcb.umd.edu/cgi-bin/operondb/pairs.cgi?taxon_id=$id"

opl:
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optic:
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  redirect: "N/A"

ordr:
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oreganno:
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  redirect: "http://www.oreganno.org/oregano/recordview.action?recid=$id"

orenza:
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  redirect: "http://www.orenza.u-psud.fr/query_by_ec.php?EC_number=EC%20$id"

orfdb:
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  redirect: "http://orf.invitrogen.com/cgi-bin/ORFCard?&ORF=$id&set=UltimateORFs&hboxPath=keyword"

organelle_db:
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  redirect: "http://organelledb.lsi.umich.edu/gene.php?id=$id"

organelle_genomes:
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  redirect: "N/A"

oridb:
  type: "commonspfx"
  redirect: "http://www.oridb.org/details1.php?id=$id"

orthomcl:
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  redirect: "http://orthomcl.org/cgi-bin/OrthoMclWeb.cgi?rm=sequenceList&groupac=$id"

orygenesdb:
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  redirect: "N/A"

oryzabase:
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oshpd.39537:
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osteopromoter_database:
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owl:
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owl-s:
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p3db:
  type: "commonspfx"
  redirect: "http://digbio.missouri.edu/p3db/data/protein.php?id=$id"

pagosub:
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  redirect: "N/A"

pahdb:
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  redirect: "N/A"

paidb:
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  redirect: "N/A"

pairsdb:
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  redirect: "http://pairsdb.csc.fi/?query=seqinfo&accnum=$id"

pali:
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  redirect: "http://pauling.mbu.iisc.ernet.in/~pali/cgi/members.cgi?famno=$id"

pamgo:
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  redirect: "N/A"

pamgo_gat:
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  redirect: "N/A"

pamgo_mgg:
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pandit:
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  redirect: "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$id"

panther:
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  redirect: "http://www.pantherdb.org/panther/family.do?clsAccession=$id"

panther.gene:
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  redirect: "http://www.pantherdb.org/genes/gene.do?acc=$id"

panther.ontology:
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  redirect: "http://www.pantherdb.org/panther/category.do?categoryAcc=$id"

panzea:
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  redirect: "N/A"

parameciumdb:
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partigenedb:
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  redirect: "http://www.compsysbio.org/partigene/cluster.php?cluster=$id"

pathart:
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  redirect: "N/A"

pathbase:
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  redirect: "N/A"

pathcalling:
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pathcase:
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pathdb:
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pathema:
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  redirect: "N/A"

pathfinder:
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  redirect: "http://www.sigmaaldrich.com/life-science/your-favorite-gene-search/pathway-overviews/$id.html"

pathguide:
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  redirect: "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$id"

pathoplant:
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  redirect: "http://www.pathoplant.de/detail.php?accNo=$id"

pathwayontology:
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  redirect: "http://rgd.mcw.edu/tools/ontology/ont_annot.cgi?term_key=$id&ontology=go"

patika:
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  redirect: "N/A"

patome:
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  redirect: "N/A"

patric:
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pav:
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pbmice:
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pco:
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pd.st:
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pdb.tm:
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  redirect: "http://pdbtm.enzim.hu/?m=show_entry&id=$id"

pdba:
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  redirect: "http://www.rcsb.org/pdb/explore/explore.do?structureId=$id"

pdbbind:
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  redirect: "N/A"

pdbe:
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pdbechem:
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pdbj:
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pdbligand:
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  redirect: "N/A"

pdbreprdb:
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  redirect: "N/A"

pdbselect:
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  redirect: "N/A"

pdbsite:
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  redirect: "N/A"

pdbsum:
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pdcd:
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  redirect: "N/A"

pdq:
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pdtd:
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  redirect: "http://www.dddc.ac.cn/pdtd/detail.php?pdbId=$id"

pdzbase:
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  redirect: "N/A"

pec:
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  redirect: "N/A"

ped:
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  redirect: "N/A"

pedant:
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  redirect: "http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=$id"

pede:
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  redirect: "http://pede.dna.affrc.go.jp/seq_search/assembly_info.php?release=$id&name=$id"

pedterm:
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peo:
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pep:
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  redirect: "no search"

pepbank:
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pepcyber_ppep:
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pepr:
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pepseeker:
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  redirect: "N/A"

peptaibol:
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pepx:
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peroxisomedb:
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  redirect: "N/A"

pfd:
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pfo:
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pgc:
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  redirect: "N/A"

pgdb:
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  redirect: "http://www.urogene.org/pgdb/gene/$id.html"

pgn:
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  redirect: "http://pgn.cornell.edu/search/unigene_search_result.pl?unigene_id=$id"

pgo:
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pgtdb:
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  redirect: "N/A"

phare:
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pharmged:
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pharmgkb:
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pharmgkb-owl:
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phci2dpage:
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phenom:
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phenomeblast-owl:
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phenomicdb:
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  redirect: "N/A"

phenx:
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phenxtk:
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phexdb:
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  redirect: "N/A"

phibase:
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  redirect: "N/A"

phosphat:
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  redirect: "N/A"

phospho3d:
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  redirect: "N/A"

phosphoelm:
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  redirect: "N/A"

phosphopoint:
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phosphosite:
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phossite:
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photolist:
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  redirect: "N/A"

phylofacts:
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  redirect: "N/A"

phylont:
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phylopat:
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  redirect: "N/A"

phymere:
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phytamp:
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phytome:
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  redirect: "N/A"

phytoprot:
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  redirect: "N/A"

phytozome:
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pibase:
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  redirect: "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$id"

pid:
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  redirect: "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$id"

pidd:
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  redirect: "N/A"

pig:
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  redirect: "http://molvis.vbi.vt.edu/pig/view/pig_protein_view.php?protein=$id"

piggis:
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  redirect: "http://pig.genomics.org.cn/transview.jsp?transcript=$id"

pim:
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pinc:
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  redirect: "need login"

pindb:
  type: "commonspfx"
  redirect: "N/A"

pint:
  type: "commonspfx"
  redirect: "N/A"

pips:
  type: "commonspfx"
  redirect: "http://www.compbio.dundee.ac.uk/www-pips/Identifier.jsp?ID=$id&Interactions=Prot&LR=1.0&modules=on"

pir:
  type: "commonspfx"
  redirect: "N/A"

pirnabank:
  type: "commonspfx"
  redirect: "N/A"

pisite:
  type: "commonspfx"
  redirect: "http://pisite.hgc.jp/cgi-bin/view.cgi?pdbid=$id&chain=[?chain]"

pkb:
  type: "commonspfx"
  redirect: "N/A"

pkd:
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pko:
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pkr:
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place:
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  redirect: "N/A"

plant_mpss:
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  redirect: "N/A"

plantcare:
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  redirect: "N/A"

plantcyc:
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  redirect: "http://pmn.plantcyc.org/PLANT/NEW-IMAGE?type=GENE&object=$id"

plantgdb:
  type: "commonspfx"
  redirect: "N/A"

plantmarkers:
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plantnats:
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plantpis:
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plantprom:
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  redirect: "N/A"

plantqtlge:
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plantsp_plantst:
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planttribes:
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plasmid:
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platmetabolomics:
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pld:
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plexdb:
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plmitrna:
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plo:
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plpmdb:
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plprot:
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  redirect: "http://www.plprot.ethz.ch/index.php?page=ProteinDetails&plp_id=$id&organism=[?species_name]"

pma:
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pmap:
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  redirect: "N/A"

pmd:
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pmma2dpage:
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pmr:
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pmrna:
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po.pae:
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po.psds:
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po.sf:
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pod:
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pogs_plantrbp:
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  redirect: "http://plantrbp.uoregon.edu/pogView.php?id=$id"

point:
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polya_db:
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  redirect: "http://polya.umdnj.edu/polya_db2/gene.php?llid=$id"

polydoms:
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polymirts:
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polymorphix:
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pomamo:
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  redirect: "N/A"

pombepd:
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pompep:
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poxvirus:
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poxvirus.gene:
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poxvirus.genome:
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ppd:
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ppdb:
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ppi:
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ppnema:
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pptasedb:
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pptdb:
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  redirect: "N/A"

pqs:
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  redirect: "no search"

precise:
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  redirect: "http://precise.bu.edu/Output.aspx?UniqueID=$id"

predictome:
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  redirect: "N/A"

premod:
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  redirect: "http://genomequebec.mcgill.ca/PReMod/show/module.do?method=showModule&moduleId=$id"

prf:
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priam:
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  redirect: "http://prodomweb.univ-lyon1.fr/priam/cgi-bin/ReqPRIAM_png.pl?priam_release=OCT11&priam_ac=$id"

prime:
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  redirect: "http://prime.ontology.ims.u-tokyo.ac.jp:8081/php/DbDispProtein.php?proteinID=$id"

primer_studio:
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  redirect: "N/A"

pristionchus:
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  redirect: "N/A"

pro-ont:
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probebase:
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  redirect: "N/A"

processdb:
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  redirect: "need login"

prochart:
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procognate:
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  redirect: "http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/procognate/PDBquery.pl?PDBcode=$id&Classification=[?CATH/?SCOP/?Pfam]"

prodoric:
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  redirect: "N/A"

prodoric.bindingsite:
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  redirect: "http://prodoric.tu-bs.de/site.php?site_acc=$id"

prodoric.expression:
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  redirect: "http://prodoric.tu-bs.de/profile.php?profile_acc=$id"

prodoric.gene:
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  redirect: "http://prodoric.tu-bs.de/gene.php?gene_acc=$id"

prodoric.protein:
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  redirect: "http://prodoric.tu-bs.de/protein.php?protein_acc=$id"

profilescan:
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proglycprot:
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prolinks:
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  redirect: "N/A"

prolysed:
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  redirect: "need login"

promec:
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  redirect: "N/A"

promex:
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  redirect: "http://promex.pph.univie.ac.at/promex/?spec=$id"

promise:
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  redirect: "http://metallo.scripps.edu/PROMISE/$id.html"

pronit:
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  redirect: "http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/pronit/new/bind_entry.pl?ENTRY=$id"

prophecy:
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  redirect: "no search"

propreo:
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proquad:
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  redirect: "N/A"

prorepeat:
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prorule:
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  redirect: "http://www.expasy.org/cgi-bin/prosite/ScanView.cgi?scanfile=$id"

prosas:
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  redirect: "no search"

protchemsi:
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protcom:
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  redirect: "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$id"

protein_id:
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protein_lounge:
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  redirect: "need login"

proteinprotein_interfaces:
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  redirect: "N/A"

proteus:
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  redirect: "N/A"

protherm:
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  redirect: "http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/protherm/pp_entry.pl?ENTRY=$id"

protisa:
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  redirect: "N/A"

protonet:
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  redirect: "N/A"

protozoadb:
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prov:
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prow:
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prrdb:
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  redirect: "no search"

prtad:
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  redirect: "N/A"

psd:
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  redirect: "http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/get-sno-sequence-and-allignments?id=$id"

pseudo:
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pseudobase:
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  redirect: "http://www.ekevanbatenburg.nl/PKBASE/$id.HTML"

pseudocap:
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  redirect: "http://www.pseudomonas.com/getAnnotation.do?locusID=$id"

pseudofam:
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  redirect: "N/A"

pseudogene:
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  redirect: "http://tables.pseudogene.org/[?species_name]/$id"

psf:
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  redirect: "N/A"

psgc:
  type: "commonspfx"
  redirect: "no search"

psi.mi:
  type: "commonspfx"

psi.mod:
  type: "commonspfx"

psi.ms:
  type: "commonspfx"
  redirect: "N/A"

psibase:
  type: "commonspfx"

psisgkb:
  type: "commonspfx"
  redirect: "N/A"

psort:
  type: "commonspfx"
  redirect: "N/A"

psp:
  type: "commonspfx"
  redirect: "N/A"

pstiing:
  type: "commonspfx"
  redirect: "http://pstiing.licr.org/search/c_proteininfo.jsp?uniprot_id=$id"

pt:
  type: "commonspfx"

ptarget:
  type: "commonspfx"
  redirect: "N/A"

ptmswitchboard:
  type: "commonspfx"
  redirect: "http://cagr.pcbi.upenn.edu/PTMswitchboard/jsp/detail.jsp?ID=$id"

pto:
  type: "commonspfx"

ptsd:
  type: "commonspfx"

pubchem:
  type: "commonspfx"
  redirect: "N/A"

pubgene:
  type: "commonspfx"
  redirect: "N/A"

pubmeth:
  type: "commonspfx"
  redirect: "http://matrix.ugent.be/temp/static/$id.html"

puma2:
  type: "commonspfx"

pvonto:
  type: "commonspfx"

qibo:
  type: "commonspfx"

qppd:
  type: "commonspfx"
  redirect: "http://lpgws.nci.nih.gov/cgi-bin/PrimerViewer?acc=$id"

qprimerdepot:
  type: "commonspfx"
  redirect: "N/A"

qtl_matchmaker:
  type: "commonspfx"
  redirect: "no search"

quadbase:
  type: "commonspfx"
  redirect: "N/A"

qudt:
  type: "commonspfx"

rad:
  type: "commonspfx"
  redirect: "http://rad.dna.affrc.go.jp/SY-1102-cgi-bin/rad/PCA/ctl_frame.cgi?clone=$id"

radlex:
  type: "commonspfx"

rapdb:
  type: "commonspfx"
  redirect: "http://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/build5?name=[$id"

rapid:
  type: "commonspfx"
  redirect: "http://rapid.rcai.riken.jp/RAPID/diseasePhenotype?pid_id=$id"

rarge:
  type: "commonspfx"
  redirect: "http://rarge.psc.riken.jp/dsmutant/detail.pl?keyword=$id"

ratheart2dpage:
  type: "commonspfx"

ratmap:
  type: "commonspfx"
  redirect: "http://ratmap.org/Showgene.php?gene_stable_id=$id"

rcd:
  type: "commonspfx"
  redirect: "http://purl.bioontology.org/ontology/RCD/$id"

rct:
  type: "commonspfx"

rdf:
  type: "commonspfx"

rdfs:
  type: "commonspfx"

rdp:
  type: "commonspfx"
  redirect: "N/A"

reaxys:
  type: "commonspfx"

recode:
  type: "commonspfx"
  redirect: "http://recode.ucc.ie/recode/$id/"

reddb:
  type: "commonspfx"
  redirect: "N/A"

redfly:
  type: "commonspfx"
  redirect: "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$id"

redidb:
  type: "commonspfx"
  redirect: "http://biologia.unical.it/py_script/cgi-bin/retrieve.py?query=$id"

refexa:
  type: "commonspfx"
  redirect: "N/A"

refgenome:
  type: "commonspfx"

refold:
  type: "commonspfx"
  redirect: "no search"

regtransbase:
  type: "commonspfx"
  redirect: "http://regtransbase.lbl.gov/cgi-bin/regtransbase?page=geneinfo&seqfeature_id=$id"

regulondb:
  type: "commonspfx"
  redirect: "http://regulondb.ccg.unam.mx/GeneController?key_id_org=ECK12&gene_id=$id&type=jsp"

replicationdomain:
  type: "commonspfx"
  redirect: "http://www.replicationdomain.com/view-dataset.php?RecordID=$id"

repo:
  type: "commonspfx"
  redirect: "http://purl.bioontology.org/ontology/REPO.owl#$id"

reproduction2dpage:
  type: "commonspfx"
  redirect: "http://reprod.njmu.edu.cn/cgi-bin/2d/2d.cgi?ac=$id"

resnet:
  type: "commonspfx"
  redirect: "need login"

resourceregistry:
  type: "commonspfx"

retroryza:
  type: "commonspfx"

rex:
  type: "commonspfx"

rgap:
  type: "commonspfx"
  redirect: "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=$id"

rgd.gene:
  type: "commonspfx"
  redirect: "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id"

rgd.ref:
  type: "commonspfx"
  redirect: "http://rgd.mcw.edu/tools/references/references_view.cgi?id=$id"

rgmd:
  type: "commonspfx"
  redirect: "N/A"

rgt:
  type: "commonspfx"
  redirect: "N/A"

rh-mesh:
  type: "commonspfx"
  redirect: "http://bioonto.de/mesh.owl#$id"

rh2dpage:
  type: "commonspfx"
  redirect: "N/A"

rice_pipeline:
  type: "commonspfx"
  redirect: "http://cdna01.dna.affrc.go.jp/cDNA/report/$id.html"

ricecyc:
  type: "commonspfx"
  redirect: "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$id"

ricegaas:
  type: "commonspfx"
  redirect: "N/A"

ridom:
  type: "commonspfx"
  redirect: "N/A"

rissc:
  type: "commonspfx"
  redirect: "http://egg.umh.es/rissc/fich.php?accession=$id"

rkd:
  type: "commonspfx"
  redirect: "http://phylomics.ucdavis.edu/kinase/tree.php?fam=$id"

rmd:
  type: "commonspfx"
  redirect: "http://ribosome.fandm.edu/node/$id"

rna_frabase:
  type: "commonspfx"

rna_sstrand:
  type: "commonspfx"
  redirect: "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$id"

rnacossmos:
  type: "commonspfx"

rnadb:
  type: "commonspfx"

rnai_codex:
  type: "commonspfx"
  redirect: "N/A"

rnaidb:
  type: "commonspfx"
  redirect: "N/A"

rnajunction:
  type: "commonspfx"
  redirect: "http://rnajunction.abcc.ncifcrf.gov/JunctionPage.php?jid=$id"

rnao:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

rnrdb:
  type: "commonspfx"
  redirect: "http://rnrdb.molbio.su.se/proteins_for_organism.html?organism_nr=$id"

roged:
  type: "commonspfx"
  redirect: "N/A"

roleo:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

rospath:
  type: "commonspfx"
  redirect: "N/A"

rospath.pc:
  type: "commonspfx"
  redirect: "http://rospath.ewha.ac.kr/complex/ProteinComplexDetailFrm.jsp?ENTITY_ID=$id"

rospath.protein:
  type: "commonspfx"
  redirect: "http://rospath.ewha.ac.kr/protein/ProteinDetailFrm.jsp?ENTITY_ID=$id"

rospath.signalling:
  type: "commonspfx"
  redirect: "http://rospath.ewha.ac.kr/signaling/SignalingDetailFrm.jsp?SIGNALING_ID=$id"

rospath.transition:
  type: "commonspfx"
  redirect: "http://rospath.ewha.ac.kr/interaction/ProteinTransitionDetailFrm.jsp?ENTITY_ID=$id"

roundup:
  type: "commonspfx"

rpd:
  type: "commonspfx"
  redirect: "N/A"

rpg:
  type: "commonspfx"
  redirect: "http://ribosome.miyazaki-med.ac.jp/rpg.cgi?mode=gene&id=$id"

rpo:
  type: "commonspfx"

rrndb:
  type: "commonspfx"
  redirect: "N/A"

rs:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

rsgdb:
  type: "commonspfx"

rsitedb:
  type: "commonspfx"
  redirect: "N/A"

rsnp_guide:
  type: "commonspfx"

rtcgd:
  type: "commonspfx"
  redirect: "http://rtcgd.abcc.ncifcrf.gov/cgi-bin/mm9/clone_finder.cgi?query=$id"

rtkdb:
  type: "commonspfx"
  redirect: "N/A"

rtprimerdb:
  type: "commonspfx"
  redirect: "http://medgen.ugent.be/rtprimerdb/assay_report.php?assay_id=$id"

rvd:
  type: "commonspfx"
  redirect: "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$id"

rxnorm:
  type: "commonspfx"

s4:
  type: "commonspfx"

s_mart_db:
  type: "commonspfx"
  redirect: "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$id"

sabiork:
  type: "commonspfx"

sabiork.kinetic:
  type: "commonspfx"
  redirect: "http://sabiork.h-its.org/kineticLawEntry.jsp?kinlawid=$id"

sac:
  type: "commonspfx"
  redirect: "N/A"

sael:
  type: "commonspfx"

sagalist:
  type: "commonspfx"
  redirect: "N/A"

sagemap:
  type: "commonspfx"

salad:
  type: "commonspfx"
  redirect: "http://salad.dna.affrc.go.jp/CGViewer/en/v3.0/cgv_clust_view.jsp?pfamid=$id"

sam:
  type: "commonspfx"
  redirect: "N/A"

sanger:
  type: "commonspfx"
  redirect: "N/A"

sao:
  type: "commonspfx"

sbase:
  type: "commonspfx"
  redirect: "http://hydra.icgeb.trieste.it/sbase/sbase.php?sec=search&sub=group&group_id=$id"

sbkb:
  type: "commonspfx"

sbpax:
  type: "commonspfx"

sbro:
  type: "commonspfx"

scadb:
  type: "commonspfx"
  redirect: "http://ymbc.ym.edu.tw/cgi-bin/SCAdb_ensembl/aroundSTR.cgi?sca_type=SCA1&type=CAG&repeats_id=$id"

scansite:
  type: "commonspfx"
  redirect: "N/A"

schistodb:
  type: "commonspfx"
  redirect: "http://schistocyc.schistodb.net/ptools/SM/NEW-IMAGE?type=GENE&object=$id"

scmd:
  type: "commonspfx"
  redirect: "http://yeast.gi.k.u-tokyo.ac.jp/datamine/ViewStats.do?orf=$id"

scopec:
  type: "commonspfx"

scoppi:
  type: "commonspfx"
  redirect: "N/A"

scor:
  type: "commonspfx"

scorpion:
  type: "commonspfx"

scpd:
  type: "commonspfx"
  redirect: "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$id"

scripdb:
  type: "commonspfx"

sdap:
  type: "commonspfx"
  redirect: "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$id"

sdo:
  type: "commonspfx"

sdr:
  type: "commonspfx"
  redirect: "http://paradox.harvard.edu/sdr/families/$id/$id_main.html"

search-url:
  type: "commonspfx"

sebida:
  type: "commonspfx"
  redirect: "no search"

seedgenes:
  type: "commonspfx"
  redirect: "http://www.seedgenes.org/SeedGeneProfile?geneSymbol=$id"

seg:
  type: "commonspfx"

selectome:
  type: "commonspfx"
  redirect: "N/A"

selenodb:
  type: "commonspfx"
  redirect: "http://www.selenodb.org/cgi-perl/feature_report.pl?feature=$id_1.0"

selexdb:
  type: "commonspfx"
  redirect: "no search"

sentra:
  type: "commonspfx"

sep:
  type: "commonspfx"

seqanswers:
  type: "commonspfx"

sevens:
  type: "commonspfx"
  redirect: "N/A"

sgmd:
  type: "commonspfx"

shibase:
  type: "commonspfx"
  redirect: "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$id"

shr:
  type: "commonspfx"
  redirect: "http://www.shojaee.com/shr/shr.owl#$id"

siddbase:
  type: "commonspfx"
  redirect: "N/A"

sider:
  type: "commonspfx"

siege:
  type: "commonspfx"
  redirect: "http://pulm.bumc.bu.edu/cgi-bin/siegeDB/siege_html/compsearchgraph.cgi?$id"

siena2dpage:
  type: "commonspfx"
  redirect: "http://www.bio-mol.unisi.it/cgi-bin/2d/2d.cgi?ac=$id"

sigpath:
  type: "commonspfx"
  redirect: "N/A"

silkdb:
  type: "commonspfx"
  redirect: "http://www.silkdb.org/cgi-bin/gbrowse/silkdb/?name=$id"

silksatdb:
  type: "commonspfx"

silva:
  type: "commonspfx"
  redirect: "http://www.arb-silva.de/browser/ssu/$id/embl/?tx_pmtree_pi1[pid]=$id"

simap:
  type: "commonspfx"

sio:
  type: "commonspfx"

sioc:
  type: "commonspfx"

sirecords:
  type: "commonspfx"
  redirect: "need login"

sirnadb:
  type: "commonspfx"
  redirect: "N/A"

sisyphus:
  type: "commonspfx"
  redirect: "http://sisyphus.mrc-cpe.cam.ac.uk/sisyphus/alignment.jsp?ac=$id"

sitbac:
  type: "commonspfx"

sitesbase:
  type: "commonspfx"
  redirect: "N/A"

skeletome:
  type: "commonspfx"

skfst:
  type: "commonspfx"

skos:
  type: "commonspfx"

sltmd:
  type: "commonspfx"
  redirect: "need login"

smd:
  type: "commonspfx"
  redirect: "N/A"

smedgd:
  type: "commonspfx"
  redirect: "N/A"

smr:
  type: "commonspfx"
  redirect: "http://swissmodel.expasy.org/repository/?pid=$id&uid=&token=&zid=async"

snap:
  type: "commonspfx"
  redirect: "http://snap.humgen.au.dk/views/geneview.cgi?gene=$id"

snappi:
  type: "commonspfx"
  redirect: "N/A"

sno_scarnabase:
  type: "commonspfx"
  redirect: "N/A"

snornalbmedb:
  type: "commonspfx"
  redirect: "http://www-snorna.biotoul.fr/plus.php?id=$id"

snp2nmd:
  type: "commonspfx"
  redirect: "http://variome.kobic.re.kr/SNP2NMD/snp2nmd.jsp?id=$id&rule=50"

snp500cancer:
  type: "commonspfx"
  redirect: "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$id"

snpeffect:
  type: "commonspfx"
  redirect: "http://snpeffect.vib.be/snp_main.php?id=$id"

snpethnos:
  type: "commonspfx"
  redirect: "N/A"

snplogic:
  type: "commonspfx"
  redirect: "N/A"

snpo:
  type: "commonspfx"

snpstr:
  type: "commonspfx"
  redirect: "N/A"

sopharm:
  type: "commonspfx"

source:
  type: "commonspfx"
  redirect: "N/A"

soy:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

soygd:
  type: "commonspfx"
  redirect: "N/A"

spad:
  type: "commonspfx"

spbase:
  type: "commonspfx"
  redirect: "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$id"

spd:
  type: "commonspfx"
  redirect: "http://spd.cbi.pku.edu.cn/spd_pro.php?id=$id"

spdo:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

speed:
  type: "commonspfx"
  redirect: "N/A"

spike:
  type: "commonspfx"
  redirect: "N/A"

splicedb:
  type: "commonspfx"

spliceinfo:
  type: "commonspfx"
  redirect: "http://spliceinfo.mbc.nctu.edu.tw/info_show.php?gs_id=$id"

splicenest:
  type: "commonspfx"
  redirect: "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$id"

spo:
  type: "commonspfx"

spodobase:
  type: "commonspfx"
  redirect: "http://bioweb.ensam.inra.fr/Spodopterav3/sequence?name=$id&class=Sequence"

sprint:
  type: "commonspfx"
  redirect: "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$id&display_opts=Prints&category=None&queryform=false&regexpr=off"

sprouts:
  type: "commonspfx"
  redirect: "N/A"

spto:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

srd:
  type: "commonspfx"
  redirect: "http://rapeseed.plantsignal.cn/viewGene.do?id=$id"

srnamap:
  type: "commonspfx"

srpdb:
  type: "commonspfx"
  redirect: "http://rnp.uthct.edu/rnp/SRPDB/rna/sequences/fasta/$id.fasta"

srs:
  type: "commonspfx"

ssd:
  type: "commonspfx"
  redirect: "N/A"

sso:
  type: "commonspfx"

ssp:
  type: "commonspfx"

sstoss:
  type: "commonspfx"
  redirect: "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$id"

stcdb:
  type: "commonspfx"
  redirect: "no search"

stellabase:
  type: "commonspfx"
  redirect: "no search"

stingreport:
  type: "commonspfx"
  redirect: "no search"

stke:
  type: "commonspfx"
  redirect: "need login"

stkecm:
  type: "commonspfx"

straininfonet:
  type: "commonspfx"
  redirect: "http://www.straininfo.net/taxa/$id"

strbase:
  type: "commonspfx"
  redirect: "N/A"

strepto_db:
  type: "commonspfx"
  redirect: "http://oger.tu-bs.de/websites/query_result.php?index=1&dbno=$id"

suba:
  type: "commonspfx"
  redirect: "http://suba.plantenergy.uwa.edu.au/flatfile.php?id=$id"

sulfolobus:
  type: "commonspfx"
  redirect: "http://www.sulfolobus.org/cbin/mutagen.pl?page=misc&gidinfo=$id"

supercat:
  type: "commonspfx"
  redirect: "N/A"

superdrug:
  type: "commonspfx"
  redirect: "http://bioinf.charite.de/superdrug/fullinfo.php?cas=$id"

superfamily:
  type: "commonspfx"
  redirect: "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid=$id"

superhapten:
  type: "commonspfx"
  redirect: "http://bioinformatics.charite.de/superhapten/fullinfo_hapten_chime.php?id=$id"

supernatural:
  type: "commonspfx"
  redirect: "http://bioinformatics.charite.de/supernatural/marvin/fullinfo_roempp_marvin.php?cas=$id"

superscent:
  type: "commonspfx"
  redirect: "http://bioinformatics.charite.de/superscent/src/fullinfo.php?cas=$id"

supersite:
  type: "commonspfx"
  redirect: "http://bioinf-tomcat.charite.de/supersite/resultPDB.faces?pdbid=$id"

supertoxic:
  type: "commonspfx"
  redirect: "http://bioinformatics.charite.de/supertoxic/index.php?site=detail_view&ids=($id)"

surface:
  type: "commonspfx"
  redirect: "N/A"

sweetdb:
  type: "commonspfx"

swiss2dpage:
  type: "commonspfx"
  redirect: "http://ca.expasy.org/swiss-2dpage/ac=$id"

swissmodel:
  type: "commonspfx"
  redirect: "http://swissmodel.expasy.org/repository/smr.php?sptr_ac=$id"

swissprot:
  type: "commonspfx"
  redirect: "N/A"

swo:
  type: "commonspfx"

syfpeithi:
  type: "commonspfx"
  redirect: "http://www.ebi.ac.uk/cgi-bin/emblfetch?$id"

symptom:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

syn:
  type: "commonspfx"

synapse:
  type: "commonspfx"

syndb:
  type: "commonspfx"
  redirect: "N/A"

synonym:
  type: "commonspfx"

sysbodyfluid:
  type: "commonspfx"
  redirect: "http://www.biosino.org/bodyfluid/protein.jsp?proteinID=$id"

sysmo.jerm:
  type: "commonspfx"

syspimp:
  type: "commonspfx"

systers:
  type: "commonspfx"
  redirect: "http://systers.molgen.mpg.de/cgi-bin/nph-fetchcluster.pl?CLNR=$id"

systomonas:
  type: "commonspfx"
  redirect: "N/A"

systomonas.compound:
  type: "commonspfx"
  redirect: "http://www.systomonas.de/compound.php?cp_acc=$id"

systomonas.gene:
  type: "commonspfx"
  redirect: "http://www.systomonas.de/gene.php?ge_acc=$id"

systomonas.interaction:
  type: "commonspfx"
  redirect: "http://www.systomonas.de/interaction.php?ia_acc=$id"

systomonas.pathways:
  type: "commonspfx"
  redirect: "http://www.systomonas.de/pathway.php?pa_acc=$id"

systomonas.protein:
  type: "commonspfx"
  redirect: "http://www.systomonas.de/protein.php?pr_acc=$id"

sysznf:
  type: "commonspfx"
  redirect: "no search"

t1dbase:
  type: "commonspfx"
  redirect: "http://t1dbase.org/page/Overview/display/gene_id/$id"

tacrd:
  type: "commonspfx"
  redirect: "N/A"

tads:
  type: "commonspfx"

taed:
  type: "commonspfx"
  redirect: "http://www.sbc.su.se/~malin_a/TAEDcorr/$id.html"

tagd:
  type: "commonspfx"
  redirect: "no search"

tahe:
  type: "commonspfx"

tahh:
  type: "commonspfx"

tair:
  type: "commonspfx"
  redirect: "N/A"

tao:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

targetdb:
  type: "commonspfx"
  redirect: "N/A"

tassdb:
  type: "commonspfx"
  redirect: "N/A"

taxrank:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

tbdb:
  type: "commonspfx"
  redirect: "http://genome.tbdb.org/annotation/genome/tbdb/GeneDetails.html?sp=$id"

tbestdb:
  type: "commonspfx"
  redirect: "http://tbestdb.bcm.umontreal.ca/searches/contig.php?conDeID=$id"

tc7ap:
  type: "commonspfx"
  redirect: "http://www.chr7.org/cgi-bin/geneview?id=$id"

tccd:
  type: "commonspfx"
  redirect: "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$id"

tcruzidb:
  type: "commonspfx"
  redirect: "http://tcruzidb.org/tcruzidb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=$id"

tcsnp:
  type: "commonspfx"

tdr:
  type: "commonspfx"

tdrtargets:
  type: "commonspfx"

tecrdb:
  type: "commonspfx"
  redirect: "http://xpdb.nist.gov/enzyme_thermodynamics/enzyme_data1.pl?T1=$id"

ted:
  type: "commonspfx"
  redirect: "N/A"

teddy:
  type: "commonspfx"

telomerase_database:
  type: "commonspfx"
  redirect: "N/A"

teo:
  type: "commonspfx"

tess:
  type: "commonspfx"
  redirect: "http://www.cbil.upenn.edu/cgi-bin/tess/tess?request=FCT-DBRTRV-Accno&key=$id"

tfe:
  type: "commonspfx"

tgdb:
  type: "commonspfx"
  redirect: "http://www.tumor-gene.org/cgi-bin/TGDB/tgdb_fetch_gene.cgi?gene=$id"

tgi:
  type: "commonspfx"
  redirect: "http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=$id"

tgma:
  type: "commonspfx"

thealternativa:
  type: "commonspfx"

thesaurus:
  type: "commonspfx"

thgs:
  type: "commonspfx"
  redirect: "N/A"

thpsmd:
  type: "commonspfx"

tied:
  type: "commonspfx"
  redirect: "http://www.iedb.org/epId/$id"

tigr:
  type: "commonspfx"
  redirect: "unavailable"

tigr.ath:
  type: "commonspfx"
  redirect: "unavailable"

tigr.pfa:
  type: "commonspfx"
  redirect: "unavailable"

tigr.ref:
  type: "commonspfx"
  redirect: "unavailable"

tigr.tba:
  type: "commonspfx"
  redirect: "unavailable"

tigrfams:
  type: "commonspfx"
  redirect: "http://cmr.jcvi.org/cgi-bin/CMR/HmmReport.cgi?hmm_acc=$id"

tm-const:
  type: "commonspfx"

tm-mer:
  type: "commonspfx"

tm-other-factors:
  type: "commonspfx"

tm-signs-and-sympts:
  type: "commonspfx"

tma:
  type: "commonspfx"

tmo:
  type: "commonspfx"

tmrdb:
  type: "commonspfx"
  redirect: "N/A"

tok:
  type: "commonspfx"

tomatest_db:
  type: "commonspfx"
  redirect: "http://biosrv.cab.unina.it/solestdb/clusterview.php?clid=$id"

topofitdb:
  type: "commonspfx"

toposnp:
  type: "commonspfx"

tops:
  type: "commonspfx"

toxkb:
  type: "commonspfx"

toxodb:
  type: "commonspfx"
  redirect: "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"

tpd:
  type: "commonspfx"
  redirect: "unavailable"

tpdb:
  type: "commonspfx"
  redirect: "http://tpdb.medchem.ku.edu:8080/protein_database/protein_details.jsp?prot_id=$id"

tpmd:
  type: "commonspfx"
  redirect: "http://tpmd2.nhri.org.tw/tpmd/php-bin/filter.php?search=$id"

tprd:
  type: "commonspfx"
  redirect: "N/A"

tptad:
  type: "commonspfx"
  redirect: "http://plantta.jcvi.org/cgi-bin/plantta_report.pl?ta=$id"

tractor_db:
  type: "commonspfx"
  redirect: "N/A"

trait:
  type: "commonspfx"

transcompel:
  type: "commonspfx"
  redirect: "need login"

transfac:
  type: "commonspfx"
  redirect: "need login"

transfactomedb:
  type: "commonspfx"
  redirect: "http://bussemaker.bio.columbia.edu:8080/ytdb-cgi/[?RNA/?DNA]/ViewPSAM?ms=[?RNA/?DNA]&M=$id"

transit:
  type: "commonspfx"
  redirect: "N/A"

transogene:
  type: "commonspfx"
  redirect: "N/A"

transpath:
  type: "commonspfx"
  redirect: "need login"

transportdb:
  type: "commonspfx"
  redirect: "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$id"

transterm:
  type: "commonspfx"
  redirect: "http://mrna.otago.ac.nz/cgi-bin/tt_data_browse/RNAMotif?PatID=$id"

trbase:
  type: "commonspfx"
  redirect: "N/A"

trdb:
  type: "commonspfx"
  redirect: "need login"

tred:
  type: "commonspfx"
  redirect: "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$id"

trembl:
  type: "commonspfx"
  redirect: "N/A"

triples:
  type: "commonspfx"

trmp:
  type: "commonspfx"
  redirect: "http://bidd.nus.edu.sg/group/pathway/$id"

trna_sequences:
  type: "commonspfx"

trnadbce:
  type: "commonspfx"
  redirect: "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$id"

tromer:
  type: "commonspfx"

tropgene:
  type: "commonspfx"
  redirect: "N/A"

trrd:
  type: "commonspfx"
  redirect: "N/A"

trsdb:
  type: "commonspfx"
  redirect: "unavailable"

tssrmd:
  type: "commonspfx"
  redirect: "N/A"

ttat:
  type: "commonspfx"

ttd:
  type: "commonspfx"

tto:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

ttw:
  type: "commonspfx"
  redirect: "N/A"

tuberculist:
  type: "commonspfx"
  redirect: "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id"

twosides:
  type: "commonspfx"

u12db:
  type: "commonspfx"
  redirect: "N/A"

uagb:
  type: "commonspfx"
  redirect: "http://archaea.ucsc.edu/cgi-bin/hgGateway?db=$id"

uam:
  type: "commonspfx"

ucbh:
  type: "commonspfx"

ucd2dpage:
  type: "commonspfx"

ucsc:
  type: "commonspfx"
  redirect: "N/A"

ugenome:
  type: "commonspfx"

ugmicrosatdb:
  type: "commonspfx"
  redirect: "http://www.veenuash.info/veenu/chromo.asp?ns=$id"

uk_cropnet:
  type: "commonspfx"
  redirect: "N/A"

ulysses:
  type: "commonspfx"
  redirect: "N/A"

umbbd:
  type: "commonspfx"

uni-ece:
  type: "commonspfx"

unihi:
  type: "commonspfx"
  redirect: "N/A"

unimes:
  type: "commonspfx"

unipathway:
  type: "commonspfx"
  redirect: "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$id"

uniprobe:
  type: "commonspfx"

uniprot.sl:
  type: "commonspfx"
  redirect: "N/A"

uniprot.taxonomy:
  type: "commonspfx"
  redirect: "http://www.uniprot.org/taxonomy/$id"

uniprot.var:
  type: "commonspfx"

uniref:
  type: "commonspfx"
  redirect: "http://www.uniprot.org/uniref/$id"

unisave:
  type: "commonspfx"
  redirect: "N/A"

unitrap:
  type: "commonspfx"

unitsontology:
  type: "commonspfx"

univec:
  type: "commonspfx"
  redirect: "N/A"

unprot.keywords:
  type: "commonspfx"
  redirect: "http://www.uniprot.org/keywords/$id"

uspto.protein:
  type: "commonspfx"

utgb_medaka:
  type: "commonspfx"
  redirect: "N/A"

utrdb_utrsite:
  type: "commonspfx"
  redirect: "http://utrdb.ba.itb.cnr.it/getgene/$id"

utrome:
  type: "commonspfx"
  redirect: "http://128.122.61.5/cgi-bin/UTRome/utrome.cgi?action=gene&geneid=$id"

vandf:
  type: "commonspfx"

vao:
  type: "commonspfx"

varysysdb:
  type: "commonspfx"

veb:
  type: "commonspfx"
  redirect: "N/A"

vectordb:
  type: "commonspfx"
  redirect: "N/A"

vega:
  type: "commonspfx"
  redirect: "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$id"

vfdb:
  type: "commonspfx"
  redirect: "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$id"

vhog:
  type: "commonspfx"

vida:
  type: "commonspfx"
  redirect: "unavailable"

violin:
  type: "commonspfx"
  redirect: "N/A"

viperdb:
  type: "commonspfx"
  redirect: "http://viperdb.scripps.edu/info_page.php?VDB=$id"

virgen:
  type: "commonspfx"
  redirect: "N/A"

virhostnet:
  type: "commonspfx"
  redirect: "need login"

virmirdb:
  type: "commonspfx"
  redirect: "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$id"

viroligo:
  type: "commonspfx"
  redirect: "http://viroligo.okstate.edu/main.php?vid=$id"

virusmint:
  type: "commonspfx"
  redirect: "N/A"

vita:
  type: "commonspfx"
  redirect: "http://vita.mbc.nctu.edu.tw/search.php?acc=$id"

vivo:
  type: "commonspfx"

vkcdb:
  type: "commonspfx"
  redirect: "http://vkcdb.biology.ualberta.ca/cgi-bin/vkcdb/vkcdb-scp/entry.cgi?vkcid=$id"

vld:
  type: "commonspfx"

vmd:
  type: "commonspfx"
  redirect: "http://vmd.vbi.vt.edu/cgi-bin/browse/browserDetail_new.cgi?ID=$id"

vo:
  type: "commonspfx"
  redirect: "N/A"

void:
  type: "commonspfx"

voronoia:
  type: "commonspfx"
  redirect: "N/A"

vso:
  type: "commonspfx"

vt:
  type: "commonspfx"

vz:
  type: "commonspfx"
  redirect: "http://viralzone.expasy.org/all_by_protein/$id.html"

wbbt:
  type: "commonspfx"
  redirect: "http://wormbase.org/db/ontology/anatomy?name=$id"

wbls:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

wbphenotype:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

webelements:
  type: "commonspfx"
  redirect: "http://webelements.com/$id"

wfleabase:
  type: "commonspfx"
  redirect: "http://wfleabase.org/genepage/daphnia/$id"

wgs84:
  type: "commonspfx"

who:
  type: "commonspfx"

wikipedia:
  type: "commonspfx"
  redirect: "http://en.wikipedia.org/wiki/$id"

wntdb:
  type: "commonspfx"
  redirect: "N/A"

world2dpage:
  type: "commonspfx"
  redirect: "http://world-2dpage.expasy.org/repository/database=$id"

wormbase:
  type: "commonspfx"

wormbase.gene:
  type: "commonspfx"
  redirect: "http://www.wormbase.org/species/c_elegans/gene/$id"

wormbase.rnai:
  type: "commonspfx"
  redirect: "http://www.wormbase.org/species/c_elegans/rnai/$id"

wormbook:
  type: "commonspfx"
  redirect: "http://www.wormbook.org/chapters/$id"

wormpd:
  type: "commonspfx"
  redirect: "need login"

wsio:
  type: "commonspfx"

wwpdb:
  type: "commonspfx"
  redirect: "N/A"

xanthusbase:
  type: "commonspfx"
  redirect: "N/A"

xao:
  type: "commonspfx"
  redirect: "http://www.xenbase.org/anatomy/static/organs/$id.jsp"

xco:
  type: "commonspfx"

xmap:
  type: "commonspfx"
  redirect: "N/A"

xpd:
  type: "commonspfx"

xpro:
  type: "commonspfx"

xsd:
  type: "commonspfx"

ycmn:
  type: "commonspfx"
  redirect: "N/A"

ycmn.complex:
  type: "commonspfx"
  redirect: "http://www.comp-sys-bio.org/yeastnet/v4/showComplexes.php?complex_id=$id"

ycmn.compound:
  type: "commonspfx"
  redirect: "http://www.comp-sys-bio.org/yeastnet/v4/showCompounds.php?cpd_id=$id"

ycmn.gene:
  type: "commonspfx"
  redirect: "http://www.comp-sys-bio.org/yeastnet/v4/showGenes.php?gene_id=$id"

ycmn.protein:
  type: "commonspfx"
  redirect: "http://www.comp-sys-bio.org/yeastnet/v4/showProteins.php?protein_id=$id"

ycmn.reaction:
  type: "commonspfx"
  redirect: "http://www.comp-sys-bio.org/yeastnet/v4/showEvents.php?event_id=$id"

yeastfunc:
  type: "commonspfx"
  redirect: "http://func.med.harvard.edu/yeast/genes/list_functional_scores/$id"

yeastract:
  type: "commonspfx"
  redirect: "http://www.yeastract.com/view.php?existing=locus&orfname=$id"

ygob:
  type: "commonspfx"
  redirect: "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$id"

yh_database:
  type: "commonspfx"
  redirect: "http://yh.genomics.org.cn/mapview.jsp?path=$id"

ymgv:
  type: "commonspfx"
  redirect: "N/A"

ympd:
  type: "commonspfx"
  redirect: "N/A"

ypd:
  type: "commonspfx"
  redirect: "need login"

ypo:
  type: "commonspfx"

yrc:
  type: "commonspfx"
  redirect: "http://www.yeastrc.org/pdr/viewProtein.do?id=$id"

ysd:
  type: "commonspfx"
  redirect: "http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/snrs/$id.php"

zea:
  type: "commonspfx"

zfa:
  type: "commonspfx"
  redirect: "http://purl.obolibrary.org/obo/$id"

zifdb:
  type: "commonspfx"
  redirect: "http://bindr.gdcb.iastate.edu:8080/ZiFDB/controller/checkArticle?artId=$id"


# 4048 added prefixes
