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        CALIPHO group at the SIB - Swiss Institute of Bioinformatics
        Geneva, Switzerland
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 Description: Cellosaurus: cross-referencing to external resources
 Version: 38.0
 Last update: 20-May-2021

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This document describes how you can establish web links (cross-references)
to the various resources that are listed in the Cellosaurus.

Important notes

a) In this document "%s" stands for the identifier that should be parsed
out of the relevant DR, RX, CC, DI or OX line. For example, if you want to
link out from the following DR line:

 DR   ATCC; HTB-30

you should use the information on the "Db_URL" line of the ATCC entry in
this document which currently indicates:

 https://www.atcc.org/Products/All/%s.aspx

thus your corresponding web link should go to:

 https://www.atcc.org/Products/All/HTB-30.aspx

b) For historical and reference purposes we keep in the Cellosaurus cross-
references to catalog entries corresponding to cell lines that are no longer
distributed by a specific cell line collection. We indicate this fact by
using the "CC" line topic "Discontinued". Example:

 CC   Discontinued: DSMZ; ACC-506; true.

In this example when you parse out the corresponding DR line:

 DR   DSMZ; ACC-506

you should not establish a web link to that particular cross-reference.

c) If you want to do the reverse of what is described in this document, ie
establishing web links to the Cellosaurus, you can do so by using the
following Db_URL:

 https://web.expasy.org/cellosaurus/%s

where %s is the accession number of the cell line. Example:

 https://web.expasy.org/cellosaurus/CVCL_0033

The format of the various lines that include cross-references are described
here:

1) DR lines

Format: DR   Resource_abbrev; %s
Where : Resource_abbrev is one of: 4DN|ABCD|ABM|AddexBio|ArrayExpress|ATCC|BCGO|BCRC|BCRJ|BEI_Resources|BTO|BioSample|BioSamples|CBA|CCLE|CCLV|CCRID|CCTCC|Cell_Biolabs|Cell_Model_Passport|CGH-DB|ChEMBL-Cells|ChEMBL-Targets|CLDB|CLO|CLS|ColonAtlas|Coriell|Cosmic|Cosmic-CLP|dbMHC|DepMap|DGRC|DiscoverX|DSMZ|eagle-i|EBiSC|ECACC|EFO|ENCODE|ESTDAB|FCDI|FCS-free|FlyBase|GDSC|GEO|HipSci|Horizon_Discovery|hPSCreg|IARC_TP53|IBRC|ICLC|IGRhCellID|IGSR|IHW|Imanis|IPD-IMGT/HLA|ISCR|IZSLER|JCRB|KCB|KCLB|Kerafast|KYinno|LiGeA|LIMORE|LINCS_HMS|LINCS_LDP|Lonza|MCCL|MeSH|MetaboLights|Millipore|MMRRC|NCBI_Iran|NCI-DTP|NHCDR |NISES|NIH-ARP|PerkinElmer|PharmacoDB|PRIDE|Progenetix|RCB|RSCB|SKIP|SKY/M-FISH/CGH|TCB|TKG|TNGB|TOKU-E|WiCell|Wikidata|Ximbio

2) RX lines

Format: RX   Resource_abbrev=%s;
Where : Resource_abbrev is one of: CelloPub|DOI¦Patent¦PubMed

3) CC lines (except "sequence variation")

Topic:  Knockout cell
Format: CC   Knockout cell: Method=Method_name; Resource_abbrev; %s; Gene/protein_name.
Where : Resource_abbrev is one of: FlyBase|HGNC|MGI|RGD|UniProtKB|VGNC

Topic:  Monoclonal antibody target
Format: CC   Monoclonal antibody target: Resource_abbrev; %s; Gene/protein_name.
Where : Resource_abbrev is one of: ChEBI|PubChem|UniProtKB

Topic:  Selected for resistance to
Format: CC   Selected for resistance to: Resource_abbrev; %s; Compound/protein_name.
Where : Resource_abbrev is one of: ChEBI|DrugBank|NCIt|PubChem|UniProtKB

Topic:  Transfected with
Format: CC   Transfected with: Resource_abbrev; %s; Gene/protein_name.
Where : Resource_abbrev is one of: FlyBase|HGNC|MGI|RGD|UniProtKB|VGNC

Topic:  Transformant
Format: CC   Transformant: Resource_abbrev; %s; Transformant_name.
Where : Resource_abbrev is one of: ChEBI|NCBI_TaxID|NCIt|PubChem

4) CC lines "Sequence variation"

The "Sequence variation" CC topic has 4 subtopics:

Format: CC   Sequence variation: Gene amplification; Resource_abbrev; %s; Gene_name; Duplication|Triplication; Zygosity=Zyg_value [; Note=Free_text] (Sources).
Format: CC   Sequence variation: Gene deletion; Resource_abbrev; %s; Gene_name; Zygosity=Zyg_value [; Note=Free_text] (Sources).
Format: CC   Sequence variation: Gene fusion; Resource_abbrev; %s; Gene_name + Resource_abbrev; %s; Gene_name; Names(s)=Name1[, Name2][, NameX] [; Note=Free_text] (Sources).
Format: CC   Sequence variation: Mutation; Resource_abbrev; %s; Gene_name; Mutation_type; Mutation_description [; ClinVar=%s|dbSNP=%s]; Zygosity=Zyg_value [; Note=Free_text] (Sources).

Where:

Resource_abbrev is one of: HGNC|MGI|RGD|UniProtKB|VGNC
Mutation_type is one of: Simple|Simple_corrected|Simple_edited|Repeat_expansion|Repeat_expansion_corrected|Unexplicit|Unexplicit_corrected|None_reported
Mutation_description is: the description of the mutation using, when possible the HGVS nomenclature.
Zyg_value is one of: Hemizygous|Heteroplasmic|Heterozygous|Homoplasmic|Homozygous|Mosaic|Unspecified|-

5) DI lines

Format: DI   Resource_abbrev; %s; Disease_name
Where : Resource_abbrev is one of: NCIt|ORDO

6) OX lines

Format: OX   Resource_abbrev=%s; ! Species_name
Where : Resource_abbrev is: NCBI_TaxID

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Abbrev: 4DN
Name  : 4D Nucleome Data Portal
Server: https://data.4dnucleome.org/
Db_URL: https://data.4dnucleome.org/biosources/%s/
Cat   : Biological sample resources
//
Abbrev: ABCD
Name  : AntiBodies Chemically Defined database
Server: https://web.expasy.org/abcd/
Db_URL: https://web.expasy.org/abcd/%s
Cat   : Biological sample resources
//
Abbrev: ABM
Name  : Applied Biological Materials cell line products
Server: https://www.abmgood.com/Cell-Biology.html
Db_URL: https://www.abmgood.com/IHC/ihcCells-dispOne.php?&catanumber=%s
        Note:
        For cell lines of the category (CA) "Cancer cell line" use:
        https://www.abmgood.com/prodTumorCells/prodTumorCells-dispOne.php?catno=%s
Cat   : Cell line collections
//
Abbrev: AddexBio
Name  : AddexBio cell line products
Server: https://www.addexbio.com/productshow?id=4
Db_URL: https://www.addexbio.com/productdetail?pid=%s
        Note: %s is the value after the slash "/" in the DR line.
        Example: for "DR   AddexBio; T0016001/4918": %s=4918
Cat   : Cell line collections
//
Abbrev: ArrayExpress
Name  : ArrayExpress Archive of Functional Genomics
Server: https://www.ebi.ac.uk/arrayexpress/
Db_URL: https://www.ebi.ac.uk/arrayexpress/experiments/%s/
Cat   : Gene expression databases
//
Abbrev: ATCC
Name  : American Type Culture Collection
Server: https://www.atcc.org/
Db_URL: https://www.atcc.org/Products/All/%s.aspx
Cat   : Cell line collections
//
Abbrev: BCGO
Name  : Beta Cell Genomics Ontology
Server: https://github.com/obi-bcgo/bcgo
Db_URL: http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/%s
Cat   : Ontologies
//
Abbrev: BCRC
Name  : Taiwan Bioresource Collection and Research Center
Server: https://catalog.bcrc.firdi.org.tw/
Db_URL: https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=%s
Cat   : Cell line collections
//
Abbrev: BCRJ
Name  : Banco de Celulas do Rio de Janeiro
Server: http://bcrj.org.br/celula/bcrj
Db_URL: http://bcrj.org.br/celula/%s
Cat   : Cell line collections
//
Abbrev: BEI_Resources
Name  : BEI Resources
Server: https://www.beiresources.org/Home.aspx
Db_URL: https://www.beiresources.org/Catalog/cellBanks/%s.aspx
Cat   : Cell line collections
//
Abbrev: BioSample
Name  : BioSample database
Server: https://www.ncbi.nlm.nih.gov/biosample
Db_URL: https://www.ncbi.nlm.nih.gov/biosample/?term=%s
Cat   : Biological sample resources
//
Abbrev: BioSamples
Name  : BioSamples database
Server: https://www.ebi.ac.uk/biosamples/
Db_URL: https://www.ebi.ac.uk/biosamples/samples/%s
Cat   : Biological sample resources
//
Abbrev: BTO
Name  : BRENDA Tissue Ontology
Server: https://bioportal.bioontology.org/ontologies/BTO
Db_URL: https://bioportal.bioontology.org/ontologies/BTO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBTO_%s
        Note: %s is the numerical part of the BTO:nnnnnnn identifier
Cat   : Ontologies
//
Abbrev: CBA
Name  : CellBank Australia
Server: http://www.cellbankaustralia.com/cellbank-australia-exclusive-lines/
Db_URL: http://www.cellbankaustralia.com/%s
Cat   : Cell line collections
//
Abbrev: CCLE
Name  : Cancer Cell Line Encyclopedia
Server: https://portals.broadinstitute.org/ccle
Db_URL: https://portals.broadinstitute.org/ccle/page?cell_line=%s
Cat   : Cell line databases/resources
//
Abbrev: CCLV
Name  : Collection of Cell Lines in Veterinary Medicine
Server: https://www.fli.de/en/services/collection-of-cell-lines-in-veterinary-medicine-cclv/
Db_URL: None
Cat   : Cell line collections
//
Abbrev: CCRID
Name  : Chinese Cell Resource Information Database
Server: http://cellresource.cn/
Db_URL: http://www.cellresource.cn/cellsearch.aspx?sc=1&where=%s
Cat   : Cell line databases/resources
//
Abbrev: CCTCC
Name  : China Center for Type Culture Collection
Server: http://www.cctcc.org/
Db_URL: None
Cat   : Cell line collections
//
Abbrev: Cell_Biolabs
Name  : Cell Biolabs cell line products
Server: https://www.cellbiolabs.com
Db_URL: https://www.cellbiolabs.com/search?keywords=%s
Cat   : Cell line collections
//
Abbrev: Cell_Model_Passport
Name  : Sanger Cell Model Passports
Server: https://cellmodelpassports.sanger.ac.uk/
Db_URL: https://cellmodelpassports.sanger.ac.uk/passports/%s
Cat   : Cell line databases/resources
//
Abbrev: CelloPub
Name  : Cellosaurus Publication
Server: https://web.expasy.org/cellosaurus/
Db_URL: https://web.expasy.org/cellosaurus/cellopub/%s
Cat   : Reference resources
//
Abbrev: CGH-DB
Name  : CGH Data Base
Server: http://www.cghtmd.jp/CGHDatabase/index_e.jsp
Db_URL: http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=%s&aid=%t&lang=en
        Note: %s and %t are respectively the values before and after the dash in the DR line.
        Example: for "DR   CGH-DB; 9029-4": %s=9029, %t=4
Cat   : Cell line databases/resources
//
Abbrev: ChEBI
Name  : Chemical Entities of Biological Interest
Server: https://www.ebi.ac.uk/chebi/
Db_URL: https://www.ebi.ac.uk/chebi/searchId.do?chebiId=%s
Cat   : Chemistry resources
//
Abbrev: ChEMBL-Cells
Name  : ChEMBL database of bioactive drug-like small molecules - Cell lines section
Server: https://www.ebi.ac.uk/chembldb
Db_URL: https://www.ebi.ac.uk/chembldb/cell/inspect/%s
Cat   : Chemistry resources
//
Abbrev: ChEMBL-Targets
Name  : ChEMBL database of bioactive drug-like small molecules - Targets section
Server: https://www.ebi.ac.uk/chembldb
Db_URL: https://www.ebi.ac.uk/chembldb/target/inspect/%s
Cat   : Chemistry resources
//
Abbrev: CLDB
Name  : Cell Line Data Base
Server: http://bioinformatics.hsanmartino.it/cldb/
Db_URL: http://bioinformatics.hsanmartino.it/cldb/%s.html
Cat   : Cell line databases/resources
//
Abbrev: ClinVar
Name  : ClinVar
Server: https://www.ncbi.nlm.nih.gov/clinvar/
Db_URL: https://www.ncbi.nlm.nih.gov/clinvar/variation/%s
Cat   : Polymorphism and mutation databases
//
Abbrev: CLO
Name  : Cell Line Ontology
Server: http://www.clo-ontology.org
Db_URL: https://www.ebi.ac.uk/ols/ontologies/clo/terms?iri=http://purl.obolibrary.org/obo/%s
Cat   : Ontologies
//
Abbrev: CLS
Name  : Cell Lines Service
Server: https://www.clsgmbh.de
Db_URL: https://www.clsgmbh.de/%s.html
        Note: %s is the value after the slash "/" in the DR line.
        Example: for "DR   CLS; 400294/p2677_MSC-P5": %s=p2677_MSC-P5
Cat   : Cell line collections
//
Abbrev: ColonAtlas
Name  : Colorectal Cancer Atlas
Server: http://colonatlas.org
Db_URL: http://colonatlas.org/search_cell_line?cell_line=%s
Cat   : Cell line databases/resources
//
Abbrev: Coriell
Name  : Coriell Institute Biorepositories
Server: https://catalog.coriell.org
Db_URL: https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=%s&Product=CC
Cat   : Cell line collections
//
Abbrev: Cosmic
Name  : Catalogue of somatic mutations in cancer
Server: https://cancer.sanger.ac.uk/cosmic
Db_URL: https://cancer.sanger.ac.uk/cosmic/sample/overview?id=%s
Cat   : Polymorphism and mutation databases
//
Abbrev: Cosmic-CLP
Name  : COSMIC Cell lines Project
Server: https://cancer.sanger.ac.uk/cell_lines
Db_URL: https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=%s
Cat   : Cell line databases/resources
//
Abbrev: dbMHC
Name  : dbMHC database
Server: https://www.ncbi.nlm.nih.gov/gv/mhc/
Db_URL: None
Cat   : Cell line databases/resources
//
Abbrev: dbSNP
Name  : Single Nucleotide Polymorphism database
Server: https://www.ncbi.nlm.nih.gov/snp/
Db_URL: https://www.ncbi.nlm.nih.gov/snp/%s
Cat   : Polymorphism and mutation databases
//
Abbrev: DepMap
Name  : Cancer Dependency Map
Server: https://depmap.org/portal/
Db_URL: https://depmap.org/portal/cell_line/%s
Cat   : Cell line databases/resources
//
Abbrev: DGRC
Name  : Drosophila Genomics Resource Center
Server: https://dgrc.bio.indiana.edu/cells/Catalog
Db_URL: https://dgrc.bio.indiana.edu/product/View?product=%s
Cat   : Cell line collections
//
Abbrev: DiscoverX
Name  : DiscoverX cell line products
Server: https://www.discoverx.com/products-applications/cell-lines
Db_URL: https://www.discoverx.com/searchproduct?searchtext=%s&searchmode=exact
Cat   : Cell line collections
//
Abbrev: DOI
Name  : Digital Object Identifier
Server: https://dx.doi.org
Db_URL: https://dx.doi.org/%s
Cat   : Reference resources
//
Abbrev: DSMZ
Name  : Deutsche Sammlung von Mikroorganismen und Zellkulturen
Server: https://www.dsmz.de/collection/catalogue/human-and-animal-cell-lines/catalogue
Db_URL: https://www.dsmz.de/collection/catalogue/details/culture/%s
Cat   : Cell line collections
//
Abbrev: DrugBank
Name  : DrugBank database
Server: https://go.drugbank.com/
Db_URL: https://go.drugbank.com/drugs/%s
Cat   : Chemistry resources
//
Abbrev: eagle-i
Name  : eagle-i resource discovery tool
Server: https://www.eagle-i.net/
Db_URL: https://%s
Cat   : Biological sample resources
//
Abbrev: EBiSC
Name  : European Bank for induced pluripotent Stem Cells
Server: https://www.ebisc.org
Db_URL: https://cells.ebisc.org/%s
Cat   : Cell line collections
//
Abbrev: ECACC
Name  : European Collection of Cell Cultures
Server: https://www.phe-culturecollections.org.uk/products/celllines/index.aspx
Db_URL: https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?refId=%s&collection=ecacc_gc
        Note:
        For cell lines of the category (CA) "Hybridoma" use:
        https://www.phe-culturecollections.org.uk/products/celllines/hybridoma/detail.jsp?refId=%s&collection=ecacc_hc
        For cell lines of the category (CA) "Induced pluripotent stem cell" use:
        https://www.phe-culturecollections.org.uk/products/celllines/ipsc/detail.jsp?refId=%s&collection=ecacc_ipsc
        For cell lines with a CC 'Part of' with "ECACC randomly selected UK Caucasian blood donors cell line selection" use:
        https://www.phe-culturecollections.org.uk/products/celllines/humanrandomcontrol/detail.jsp?refId=%s&collection=ecacc_hrc
        For cell lines with a CC 'Part of' with "ECACC chromosomal abnormality collection" use:
        https://www.phe-culturecollections.org.uk/products/celllines/humangeneticca/detail.jsp?refId=%s&collection=ecacc_hgc
        For cell lines with a CC 'Part of' with "Motor Neurone Disease (MND) collection" use:
        https://www.phe-culturecollections.org.uk/products/celllines/diseaseandnormalcohortcollections/detail.jsp?refId=%s&collection=ecacc_mnd
Cat   : Cell line collections
//
Abbrev: EFO
Name  : Experimental Factor Ontology
Server: https://www.ebi.ac.uk/efo/
Db_URL: https://www.ebi.ac.uk/efo/%s
Cat   : Ontologies
//
Abbrev: ENCODE
Name  : Encyclopedia of DNA Elements
Server: https://www.encodeproject.org
Db_URL: https://www.encodeproject.org/biosamples/%s/
Cat   : Biological sample resources
//
Abbrev: ESTDAB
Name  : European Searchable Tumour Line Database
Server: https://www.ebi.ac.uk/ipd/estdab/
Db_URL: https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?%s
Cat   : Cell line databases/resources
//
Abbrev: FCDI
Name  : FujiFilm Cellular Dynamics, Inc
Server: https://fujifilmcdi.com/the-cirm-ipsc-bank
Db_URL: None
Cat   : Cell line collections
//
Abbrev: FCS-free
Name  : Fetal Calf Serum-Free Database
Server: https://fcs-free.org/
Db_URL: https://fcs-free.org/fcs-database?%s
Cat   : Cell line databases/resources
//
Abbrev: FlyBase
Name  : Drosophila genome database
Server: https://flybase.org
Db_URL: https://flybase.org/reports/%s.html
Cat   : Organism-specific databases
//
Abbrev: GDSC
Name  : Genomics of Drug Sensitivity in Cancer Project
Server: https://www.cancerrxgene.org
Db_URL: https://www.cancerrxgene.org/translation/CellLine/%s
Cat   : Chemistry resources
//
Abbrev: GEO
Name  : Gene Expression Omnibus
Server: https://www.ncbi.nlm.nih.gov/geo/
Db_URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=%s
Cat   : Gene expression databases
//
Abbrev: HGNC
Name  : Human Gene Nomenclature Committee Database
Server: https://www.genenames.org
Db_URL: https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:%s
Cat   : Organism-specific databases
//
Abbrev: HipSci
Name  : Human Induced Pluripotent Stem Cells Initiative
Server: http://www.hipsci.org
Db_URL: http://www.hipsci.org/lines/#/lines/%s
Cat   : Cell line databases/resources
//
Abbrev: Horizon_Discovery
Name  : Horizon Discovery cell line collection
Server: https://horizondiscovery.com/
Db_URL: https://horizondiscovery.com/en/search?searchterm=%s
Cat   : Cell line collections
//
Abbrev: hPSCreg
Name  : Human Pluripotent Stem Cell Registry
Server: https://hpscreg.eu
Db_URL: https://hpscreg.eu/cell-line/%s
Cat   : Cell line databases/resources
//
Abbrev: IARC_TP53
Name  : IARC TP53 Database
Server: http://p53.iarc.fr/CellLines.aspx
Db_URL: None
Cat   : Polymorphism and mutation databases
//
Abbrev: IBRC
Name  : Iranian Biological Research Center cell line collection
Server: http://www.en.ibrc.ir/
Db_URL: None
Cat   : Cell line collections
//
Abbrev: ICLC
Name  : Interlab Cell Line Collection
Server: http://www.iclc.it
Db_URL: http://www.iclc.it/details/det_list.php?line_id=%s
Cat   : Cell line collections
//
Abbrev: IGRhCellID
Name  : Integrated Genomic Resources of human Cell Lines for Identification
Server: http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi
Db_URL: http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=%s
Cat   : Cell line databases/resources
//
Abbrev: IGSR
Name  : International Genome Sample Resource
Server: https://www.internationalgenome.org/
Db_URL: https://www.internationalgenome.org/data-portal/sample/%s
Cat   : Biological sample resources
//
Abbrev: IHW
Name  : International Histocompatibility Workshop cell lines
Server: https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html
Db_URL: None
Cat   : Cell line databases/resources
//
Abbrev: Imanis
Name  : Imanis Life Sciences cell line products
Server: https://www.imanislife.com/collections/cell-lines/
Db_URL: https://www.imanislife.com/?s=%s
Cat   : Cell line collections
//
Abbrev: IPD-IMGT/HLA
Name  : IPD-IMGT/HLA database
Server: https://www.ebi.ac.uk/ipd/imgt/hla/
Db_URL: https://www.ebi.ac.uk/cgi-bin/imgt/hla/fetch_cell.cgi?%s
Cat   : Cell line databases/resources
//
Abbrev: ISCR
Name  : International Stem Cell Registry
Server: https://www.umassmed.edu/iscr/
Db_URL: None
Cat   : Cell line databases/resources
//
Abbrev: IZSLER
Name  : Istituto Zooprofilattico Sperimentale della Lombardia e dell’Emilia Romagna biobank
Server: http://www.ibvr.org/Services/CellCultures.aspx
Db_URL: None
Cat   : Cell line collections
//
Abbrev: JCRB
Name  : Japanese Collection of Research Bioresources Cell Bank
Server: http://cellbank.nibiohn.go.jp/english/
Db_URL: http://cellbank.nibiohn.go.jp//~cellbank/en/search_res_det.cgi?RNO=%s
Cat   : Cell line collections
//
Abbrev: KCB
Name  : Kunming Cell Bank of Type Culture Collection
Server: http://www.kmcellbank.com/
Db_URL: None
Cat   : Cell line collections
//
Abbrev: KCLB
Name  : Korean Cell Line Bank
Server: https://cellbank.snu.ac.kr/main/index.html
Db_URL: https://cellbank.snu.ac.kr/english/sub/catalog.php?page=detail&CatNo=59&strQ=%s&submit1=Find+it
Cat   : Cell line collections
//
Abbrev: Kerafast
Name  : Kerafast cell lines
Server: https://www.kerafast.com/
Db_URL: https://www.kerafast.com/Search?SearchTerm=&quot;%s&quot;
Cat   : Cell line collections
//
Abbrev: KYinno
Name  : KYinno cell lines
Server: https://www.kyinno.com/
Db_URL: https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=%s.pdf
Cat   : Cell line collections
//
Abbrev: LiGeA
Name  : Cancer cell LInes GEne fusions portAl
Server: http://hpc-bioinformatics.cineca.it/fusion/main
Db_URL: http://hpc-bioinformatics.cineca.it/fusion/cell_line/%s
Cat   : Polymorphism and mutation databases
//
Abbrev: LIMORE
Name  : Liver Cancer Model Repository
Server: https://www.picb.ac.cn/limore/home
Db_URL: https://www.picb.ac.cn/limore/cellLines/single?para=%s
Cat   : Cell line databases/resources
//
Abbrev: LINCS_HMS
Name  : Harvard Medical School (HMS) LINCS Center
Server: http://lincs.hms.harvard.edu/db/cells/
Db_URL: http://lincs.hms.harvard.edu/db/cells/%s/
Cat   : Cell line databases/resources
//
Abbrev: LINCS_LDP
Name  : LINCS Data Portal
Server: http://lincsportal.ccs.miami.edu/cells/
Db_URL: http://lincsportal.ccs.miami.edu/cells/#/view/%s
Cat   : Cell line databases/resources
//
Abbrev: Lonza
Name  : Lonza Cell and Transfection Database
Server: https://knowledge.lonza.com
Db_URL: https://knowledge.lonza.com/cell?id=%s
Cat   : Cell line databases/resources
//
Abbrev: MCCL
Name  : Molecular Connection Cell Line ontology
Server: https://bioportal.bioontology.org/ontologies/MCCL
Db_URL: None
Cat   : Ontologies
//
Abbrev: MeSH
Name  : Medical Subject Headings
Server: https://www.ncbi.nlm.nih.gov/mesh
Db_URL: https://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?field=uid&term=%s
Cat   : Ontologies
//
Abbrev: MetaboLights
Name  : MetaboLights database for metabolomics experiments and derived information
Server: https://www.ebi.ac.uk/metabolights/
Db_URL: https://www.ebi.ac.uk/metabolights/%s
Cat   : Metabolomic databases
//
Abbrev: MGI
Name  : Mouse Genome Database (MGD) from Mouse Genome Informatics
Server: http://www.informatics.jax.org
Db_URL: http://www.informatics.jax.org/marker/%s
Cat   : Organism-specific databases
//
Abbrev: Millipore
Name  : Merck Millipore (EMD Millipore)
Server: https://www.merckmillipore.com/
Db_URL: https://www.merckmillipore.com/catalogue/item/%s
Cat   : Cell line collections
//
Abbrev: MMRRC
Name  : Mutant Mouse Resource & Research Centers
Server: https://www.mmrrc.org/
Db_URL: https://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=%s
Cat   : Cell line collections
//
Abbrev: NCBI_Iran
Name  : National Cell Bank of Iran
Server: http://en.pasteur.ac.ir/pages.aspx?id=823
Db_URL: None
Cat   : Cell line collections
//
Abbrev: NCBI_TaxID
Name  : NCBI taxonomy database
Server: https://www.ncbi.nlm.nih.gov/taxonomy
Db_URL: https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=%s&lvl=3
Cat   : Taxonomy
//
Abbrev: NCI-DTP
Name  : NCI Development Therapeutics Program
Server: https://dtp.cancer.gov/repositories/
Db_URL: None
Cat   : Cell line collections
//
Abbrev: NCIt
Name  : NCI thesaurus
Server: https://ncit.nci.nih.gov/ncitbrowser
Db_URL: https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=%s
Cat   : Ontologies
//
Abbrev: NHCDR
Name  : NINDS Human Cell and Data Repository
Server: https://stemcells.nindsgenetics.org
Db_URL: https://stemcells.nindsgenetics.org?line=%s
Cat   : Cell line collections
//
Abbrev: NIH-ARP
Name  : NIH AIDS Reagent Program
Server: https://www.aidsreagent.org
Db_URL: https://www.aidsreagent.org/reagentdetail.cfm?t=cell_lines&id=%s
        Note: %s is the value after the dash in the DR line.
        Example: for "DR   NIH-ARP; 11411-223": %s=223
Cat   : Cell line collections
//
Abbrev: NISES
Name  : National Institute of Sericultural and Entomological Science Cell Database
Server: https://web.archive.org/web/20160709065305/https://www.gene.affrc.go.jp/ex-nises/NISESCells/CellindexE1.html
Db_URL: None
Cat   : Cell line collections
//
Abbrev: ORDO
Name  : Orphanet Rare Disease Ontology
Server: https://www.ebi.ac.uk/ols/ontologies/ordo
Db_URL: https://www.ebi.ac.uk/ols/ontologies/ordo/terms?iri=http://www.orpha.net/ORDO/%s
Cat   : Ontologies
//
Abbrev: Patent
Name  : Google Patents
Server: https://patents.google.com
Db_URL: https://patents.google.com/patent/%s
Cat   : Reference resources
//
Abbrev: PerkinElmer
Name  : PerkinElmer cell line collection
Server: https://www.perkinelmer.com/
Db_URL: https://www.perkinelmer.com/searchresult?searchName=%s
Cat   : Cell line collections
//
Abbrev: PharmacoDB
Name  : PharmacoDB integrative pharmacogenomic database
Server: https://pharmacodb.ca/
Db_URL: https://pharmacodb.ca/cell_lines/%s
Cat   : Chemistry resources
//
Abbrev: PRIDE
Name  : PRoteomics IDEntifications archive
Server: https://www.ebi.ac.uk/pride/archive/
Db_URL: https://www.ebi.ac.uk/pride/archive/projects/%s
Cat   : Proteomic databases
//
Abbrev: Progenetix
Name  : Cancer genome data @ progenetix.org
Server: https://progenetix.org/
Db_URL: https://progenetix.org/biosamples/by-curie/cellosaurus:%s
Cat   : Polymorphism and mutation databases
//
Abbrev: PubChem
Name  : PubChem compound database
Server: https://pubchem.ncbi.nlm.nih.gov
Db_URL: https://pubchem.ncbi.nlm.nih.gov/compound/%s
Cat   : Chemistry resources
//
Abbrev: PubMed
Name  : PubMed
Server: https://www.ncbi.nlm.nih.gov/pubmed
Db_URL: https://www.ncbi.nlm.nih.gov/pubmed/%s
Cat   : Reference resources
//
Abbrev: RCB
Name  : RIKEN Bioresource Center Cell Bank
Server: https://cell.brc.riken.jp/en/rcb
Db_URL: http://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=%s&lang=En
Cat   : Cell line collections
//
Abbrev: RGD
Name  : Rat Genome Database
Server: https://rgd.mcw.edu
Db_URL: http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=%s
Cat   : Organism-specific databases
//
Abbrev: RSCB
Name  : Royan Stem Cell Bank
Server: http://www.royaninstitute.org/cmsen/index.php?option=com_content&task=view&id=205&Itemid=40
Db_URL: None
Cat   : Cell line collections
//
Abbrev: SKIP
Name  : Stemcell Knowledge and Information Portal
Server: https://www.skip.stemcellinformatics.org/en/
Db_URL: https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=%s
Cat   : Cell line databases/resources
//
Abbrev: SKY/M-FISH/CGH
Name  : SKY/M-FISH and CGH database
Server: https://www.ncbi.nlm.nih.gov/dbvar/studies/nstd136/
Db_URL: None
Cat   : Cell line databases/resources
//
Abbrev: TCB
Name  : Tick Cell Biobank
Server: https://www.pirbright.ac.uk/tick-cell-lines-views-page
Db_URL: https://www.pirbright.ac.uk/node/%s
Cat   : Cell line collections
//
Abbrev: TKG
Name  : Tohoku University cell line catalog
Server: http://www2.idac.tohoku.ac.jp/dep/ccr/
Db_URL: http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvo10%n/%s.html
        Note: n% is the second digit of the cell line AC and %s is the cell line AC without the 'TKG'
        Example: for "DR   TKG; TKG 0377": %n=3 %s=0377
Cat   : Cell line collections
//
Abbrev: TNGB
Name  : Telethon Network of Genetic Biobanks
Server: http://biobanknetwork.telethon.it/
Db_URL: http://biobanknetwork.telethon.it/Sample/View?sampleId=%s
Cat   : Cell line collections
//
Abbrev: TOKU-E
Name  : TOKU-E Cell-culture Database
Server: http://cell-lines.toku-e.com
Db_URL: http://cell-lines.toku-e.com/Cell-Lines_%s.html
Cat   : Cell line databases/resources
//
Abbrev: UniProtKB
Name  : UniProt knowledgebase
Server  https://www.uniprot.org
Db_URL: https://www.uniprot.org/uniprot/%s
Cat   : Sequence databases
//
Abbrev: VGNC
Name  : Vertebrate Gene Nomenclature Committee Database
Server: https://vertebrate.genenames.org/
Db_URL: https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/VGNC:%s
Cat   : Organism-specific databases
//
Abbrev: WiCell
Name  : WiCell Research Institute Cell Collection
Server: https://www.wicell.org
Db_URL: https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/%s.cmsx?closable=true
Cat   : Cell line collections
//
Abbrev: Wikidata
Name  : Wikidata
Server: https://www.wikidata.org/wiki/Wikidata:Main_Page
Db_URL: https://www.wikidata.org/wiki/%s
Cat   : Other
//
Abbrev: Ximbio
Name  : Ximbio reagents online portal
Server: https://ximbio.com
Db_URL: https://ximbio.com/reagent/%s
Cat   : Cell line collections
//
