{
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    "mappings": {
      "miriam": "3dmet",
      "n2t": "3dmet",
      "prefixcommons": "3DMET"
    },
    "miriam": {
      "deprecated": false,
      "description": "3DMET is a database collecting three-dimensional structures of natural metabolites.",
      "homepage": "http://www.3dmet.dna.affrc.go.jp/",
      "id": "00000066",
      "name": "3DMET",
      "namespaceEmbeddedInLui": false,
      "pattern": "^B\\d{5}$",
      "prefix": "3dmet",
      "provider_url": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1",
      "sampleId": "B00162"
    },
    "n2t": {
      "description": "3DMET is a database collecting three-dimensional structures of natural metabolites.",
      "example": "B00162",
      "homepage": "http://www.3dmet.dna.affrc.go.jp/",
      "name": "3DMET database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^B\\d{5}$",
      "prefix": "3dmet",
      "provider_url": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1"
    },
    "name": "3D Metabolites",
    "prefixcommons": {
      "formatter": "http://identifiers.org/3dmet/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "3DMET"
    },
    "wikidata": {
      "database": "Q23948774",
      "prefix": "P2796"
    }
  },
  "4dn.biosource": {
    "cellosaurus": {
      "category": "Biological sample resources",
      "homepage": "https://data.4dnucleome.org/",
      "name": "4D Nucleome Data Portal",
      "prefix": "4DN",
      "url": "https://data.4dnucleome.org/biosources/$1"
    },
    "example": "4DNSR73BT2A2",
    "mappings": {
      "cellosaurus": "4DN"
    },
    "name": "4D Nucleome Data Portal Biosource",
    "synonyms": [
      "4DN"
    ],
    "url": "https://data.4dnucleome.org/biosources/$1"
  },
  "4dn.replicate": {
    "example": "4DNESWX1J3QU",
    "name": "4D Nucleome Data Portal Experiment Replicate",
    "url": "https://data.4dnucleome.org/experiment-set-replicates/$1"
  },
  "aao": {
    "mappings": {
      "obofoundry": "aao",
      "prefixcommons": "AAO"
    },
    "obofoundry": {
      "contact": "david.c.blackburn@gmail.com",
      "contact.label": "David Blackburn",
      "deprecated": true,
      "homepage": "http://github.com/seger/aao",
      "name": "Amphibian gross anatomy",
      "prefix": "aao"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/AAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "AAO"
    }
  },
  "abcd": {
    "cellosaurus": {
      "category": "Biological sample resources",
      "homepage": "https://web.expasy.org/abcd/",
      "name": "AntiBodies Chemically Defined database",
      "prefix": "ABCD",
      "url": "https://web.expasy.org/abcd/$1"
    },
    "description": "The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies",
    "example": "AD834",
    "homepage": "https://web.expasy.org/abcd/",
    "mappings": {
      "cellosaurus": "ABCD",
      "uniprot": "ABCD"
    },
    "name": "AntiBodies Chemically Defined database",
    "uniprot": {
      "category": "Protocols and materials databases",
      "formatter": "https://web.expasy.org/cgi-bin/abcd/search_abcd.pl?input=%u",
      "identifier": "236",
      "link_is_explicit": "true",
      "name": "ABCD curated depository of sequenced antibodies",
      "prefix": "ABCD"
    },
    "url": "https://web.expasy.org/abcd/ABCD_$1"
  },
  "abs": {
    "mappings": {
      "miriam": "abs",
      "n2t": "abs",
      "prefixcommons": "ABS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography.",
      "homepage": "http://genome.crg.es/datasets/abs2005/",
      "id": "00000277",
      "name": "ABS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^A\\d+$",
      "prefix": "abs",
      "provider_url": "http://genome.crg.es/datasets/abs2005/entries/$1.html",
      "sampleId": "A0014"
    },
    "n2t": {
      "description": "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography.",
      "example": "A0014",
      "homepage": "http://genome.crg.es/datasets/abs2005/",
      "name": "ABS at IMIM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^A\\d+$",
      "prefix": "abs",
      "provider_url": "http://genome.crg.es/datasets/abs2005/entries/$1.html"
    },
    "name": "Annotated Regulatory Binding Sites",
    "prefixcommons": {
      "formatter": "http://identifiers.org/abs/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ABS"
    }
  },
  "ac": {
    "homepage": "http://www.w3.org/ns/activitystreams",
    "name": "Activity Streams",
    "url": "http://www.w3.org/ns/activitystreams#$1"
  },
  "aceview.worm": {
    "mappings": {
      "miriam": "aceview.worm",
      "n2t": "aceview.worm",
      "prefixcommons": "ACEVIEW.WORM"
    },
    "miriam": {
      "deprecated": false,
      "description": "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression.",
      "homepage": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm",
      "id": "00000282",
      "name": "Aceview Worm",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z0-9-]+$",
      "prefix": "aceview.worm",
      "provider_url": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1",
      "sampleId": "aap-1"
    },
    "n2t": {
      "description": "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression.",
      "example": "aap-1",
      "homepage": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm",
      "name": "AceView Worm at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z0-9-]+$",
      "prefix": "aceview.worm",
      "provider_url": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/aceview.worm/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ACEVIEW.WORM"
    }
  },
  "addgene": {
    "mappings": {
      "miriam": "addgene",
      "n2t": "addgene"
    },
    "miriam": {
      "deprecated": false,
      "description": "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.",
      "homepage": "http://addgene.org/",
      "id": "00000675",
      "name": "Addgene Plasmid Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$",
      "prefix": "addgene",
      "provider_url": "http://addgene.org/$1",
      "sampleId": "50943"
    },
    "n2t": {
      "description": "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.",
      "example": "50943",
      "homepage": "http://addgene.org/",
      "name": "Addgene Plasmid Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$",
      "prefix": "addgene",
      "provider_url": "http://addgene.org/$1"
    }
  },
  "adw": {
    "bioportal": {
      "name": "Animal Natural History and Life History Ontology",
      "prefix": "ADW"
    },
    "mappings": {
      "bioportal": "ADW",
      "miriam": "adw",
      "n2t": "adw",
      "obofoundry": "adw",
      "prefixcommons": "ADW"
    },
    "miriam": {
      "deprecated": false,
      "description": "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology.",
      "homepage": "https://animaldiversity.org/",
      "id": "00000492",
      "name": "Animal Diversity Web",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z_a-z]+$",
      "prefix": "adw",
      "provider_url": "https://animaldiversity.org/accounts/$1/",
      "sampleId": "Lycalopex_vetulus"
    },
    "n2t": {
      "description": "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology.",
      "example": "Lycalopex_vetulus",
      "homepage": "https://animaldiversity.org/",
      "name": "Animal Diversity Web at University of Michigan",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z_a-z]+$",
      "prefix": "adw",
      "provider_url": "https://animaldiversity.org/accounts/$1/"
    },
    "obofoundry": {
      "contact": "adw_geeks@umich.edu",
      "contact.label": "Animal Diversity Web technical staff",
      "deprecated": true,
      "homepage": "http://www.animaldiversity.org",
      "name": "Animal natural history and life history",
      "prefix": "adw"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ADW_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ADW"
    }
  },
  "aeo": {
    "bioportal": {
      "name": "Anatomical Entity Ontology",
      "prefix": "AEO"
    },
    "download_obo": "https://raw.githubusercontent.com/obophenotype/human-developmental-anatomy-ontology/master/src/ontology/aeo.obo",
    "example": "0001017",
    "mappings": {
      "bioportal": "AEO",
      "obofoundry": "aeo",
      "ols": "aeo",
      "prefixcommons": "AEO"
    },
    "obofoundry": {
      "contact": "J.Bard@ed.ac.uk",
      "contact.label": "Jonathan Bard",
      "deprecated": false,
      "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology",
      "download.owl": "http://purl.obolibrary.org/obo/aeo.owl",
      "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
      "license": "CC-BY 4.0",
      "name": "Anatomical Entity Ontology",
      "prefix": "aeo"
    },
    "ols": {
      "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology",
      "download": "http://purl.obolibrary.org/obo/aeo.owl",
      "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
      "name": "Anatomical Entity Ontology",
      "prefix": "aeo",
      "version": "2014-12-05",
      "version.iri": "http://purl.obolibrary.org/obo/aeo/releases/2014-12-05/aeo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/AEO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "AEO"
    },
    "synonyms": [
      "AEO_RETIRED"
    ]
  },
  "aero": {
    "bioportal": {
      "name": "Adverse Event Reporting Ontology",
      "prefix": "AERO"
    },
    "mappings": {
      "bioportal": "AERO",
      "obofoundry": "aero",
      "prefixcommons": "AERO"
    },
    "obofoundry": {
      "contact": "mcourtot@gmail.com",
      "contact.label": "Melanie Courtot",
      "deprecated": true,
      "description": "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events",
      "download.owl": "http://purl.obolibrary.org/obo/aero.owl",
      "homepage": "http://purl.obolibrary.org/obo/aero",
      "license": "CC-BY",
      "name": "Adverse Event Reporting Ontology",
      "prefix": "aero"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/AERO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "AERO"
    }
  },
  "affy.probeset": {
    "mappings": {
      "miriam": "affy.probeset",
      "n2t": "affy.probeset",
      "prefixcommons": "AFFY.PROBESET"
    },
    "miriam": {
      "deprecated": false,
      "description": "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration.",
      "homepage": "http://www.affymetrix.com/",
      "id": "00000394",
      "name": "Affymetrix Probeset",
      "namespaceEmbeddedInLui": false,
      "pattern": "\\d{4,}((_[asx])?_at)?",
      "prefix": "affy.probeset",
      "provider_url": "https://www.affymetrix.com/LinkServlet?probeset=$1",
      "sampleId": "243002_at"
    },
    "n2t": {
      "description": "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration.",
      "example": "243002_at",
      "homepage": "http://www.affymetrix.com/",
      "name": "Affymetrix ProbeSet in Santa Clara",
      "namespaceEmbeddedInLui": false,
      "pattern": "\\d{4,}((_[asx])?_at)?",
      "prefix": "affy.probeset",
      "provider_url": "https://www.affymetrix.com/LinkServlet?probeset=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/affy.probeset/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AFFY.PROBESET"
    }
  },
  "afo": {
    "bioportal": {
      "name": "Allotrope Merged Ontology Suite",
      "prefix": "AFO"
    },
    "mappings": {
      "bioportal": "AFO",
      "ols": "afo"
    },
    "ols": {
      "description": "Allotrope Merged Ontology Suite",
      "download": "http://afo-ols.semanticsfirst.com/ontologies/afo",
      "license": "creative-commons-attribution-license",
      "name": "Allotrope Merged Ontology Suite",
      "prefix": "afo",
      "version": "2019-05-10",
      "version.iri": "http://purl.allotrope.org/voc/afo/merged-OLS/REC/2019/05/10"
    }
  },
  "aftol.taxonomy": {
    "mappings": {
      "miriam": "aftol.taxonomy",
      "n2t": "aftol.taxonomy",
      "prefixcommons": "AFTOL.TAXONOMY"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species.",
      "homepage": "http://aftol.org/data.php",
      "id": "00000411",
      "name": "AFTOL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aftol.taxonomy",
      "provider_url": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1",
      "sampleId": "959"
    },
    "n2t": {
      "description": "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species.",
      "example": "959",
      "homepage": "http://aftol.org/data.php",
      "name": "AFTOL at University of Minnesota",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aftol.taxonomy",
      "provider_url": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1"
    },
    "name": "Assembling the Fungal Tree of Life - Taxonomy",
    "prefixcommons": {
      "formatter": "http://identifiers.org/aftol.taxonomy/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AFTOL.TAXONOMY"
    }
  },
  "agricola": {
    "go": {
      "homepage": "http://agricola.nal.usda.gov/",
      "name": "AGRICultural OnLine Access",
      "prefix": "AGRICOLA_ID"
    },
    "mappings": {
      "go": "AGRICOLA_ID",
      "miriam": "agricola",
      "n2t": "agricola",
      "prefixcommons": "AGRICOLA"
    },
    "miriam": {
      "deprecated": false,
      "description": "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.",
      "homepage": "http://agricola.nal.usda.gov/",
      "id": "00000589",
      "name": "AGRICOLA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "agricola",
      "provider_url": "http://ddr.nal.usda.gov/dspace/handle/10113/$1",
      "sampleId": "50018"
    },
    "n2t": {
      "description": "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.",
      "example": "50018",
      "homepage": "http://agricola.nal.usda.gov/",
      "name": "AGRICOLA at National Agricultural Library",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "agricola",
      "provider_url": "http://ddr.nal.usda.gov/dspace/handle/10113/$1"
    },
    "name": "Agricultural Online Access",
    "prefixcommons": {
      "formatter": "http://identifiers.org/agricola/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AGRICOLA"
    },
    "synonyms": [
      "AGR",
      "AGRICOLA_ID"
    ]
  },
  "agro": {
    "bioportal": {
      "name": "AGRonomy Ontology",
      "prefix": "AGRO"
    },
    "mappings": {
      "bioportal": "AGRO",
      "obofoundry": "agro",
      "ols": "agro",
      "prefixcommons": "AGRO"
    },
    "not_available_as_obo": true,
    "obofoundry": {
      "contact": "m.a.laporte@cgiar.org",
      "contact.label": "Marie-Angélique Laporte",
      "deprecated": false,
      "description": "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments",
      "download.owl": "http://purl.obolibrary.org/obo/agro.owl",
      "homepage": "https://github.com/AgriculturalSemantics/agro",
      "license": "CC-BY",
      "name": "Agronomy Ontology",
      "prefix": "agro"
    },
    "ols": {
      "description": "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments",
      "download": "http://purl.obolibrary.org/obo/agro.owl",
      "homepage": "https://github.com/AgriculturalSemantics/agro",
      "name": "Agronomy Ontology",
      "prefix": "agro",
      "version": "2021-07-01",
      "version.iri": "http://purl.obolibrary.org/obo/agro/releases/2021-07-01/agro.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/AGRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "AGRO"
    }
  },
  "aism": {
    "bioportal": {
      "name": "Ontology for the Anatomy of the Insect SkeletoMuscular system",
      "prefix": "AISM"
    },
    "mappings": {
      "bioportal": "AISM",
      "obofoundry": "aism",
      "ols": "aism"
    },
    "name": "Ontology for the Anatomy of the Insect SkeletoMuscular system",
    "obofoundry": {
      "contact": "entiminae@gmail.com",
      "contact.label": "Jennifer C. Girón",
      "deprecated": false,
      "description": "The AISM contains terms used in insect biodiversity research for describing structures of the exoskeleton and the skeletomuscular system. It aims to serve as the basic backbone of generalized terms to be expanded with order-specific terminology.",
      "download.json": "http://purl.obolibrary.org/obo/aism.json",
      "download.obo": "http://purl.obolibrary.org/obo/aism.obo",
      "download.owl": "http://purl.obolibrary.org/obo/aism.owl",
      "homepage": "https://github.com/insect-morphology/aism",
      "license": "CC-BY",
      "name": "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)",
      "prefix": "aism"
    },
    "ols": {
      "description": "The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research.",
      "download": "http://purl.obolibrary.org/obo/aism.owl",
      "homepage": "https://github.com/insect-morphology/aism",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology for the Anatomy of the Insect SkeletoMuscular system",
      "prefix": "aism",
      "version": "2021-07-03",
      "version.iri": "http://purl.obolibrary.org/obo/aism/releases/2021-07-03/aism.owl"
    }
  },
  "allergome": {
    "mappings": {
      "miriam": "allergome",
      "n2t": "allergome",
      "prefixcommons": "ALLERGOME",
      "uniprot": "Allergome",
      "uniprot.database": "Allergome"
    },
    "miriam": {
      "deprecated": false,
      "description": "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources.",
      "homepage": "http://www.allergome.org/",
      "id": "00000334",
      "name": "Allergome",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "allergome",
      "provider_url": "http://www.allergome.org/script/dettaglio.php?id_molecule=$1",
      "sampleId": "1948"
    },
    "n2t": {
      "description": "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources.",
      "example": "1948",
      "homepage": "http://www.allergome.org/",
      "name": "Allergome at Rome",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "allergome",
      "provider_url": "http://www.allergome.org/script/dettaglio.php?id_molecule=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/allergome/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ALLERGOME"
    },
    "uniprot": {
      "category": "Protein family/group databases",
      "formatter": "http://www.allergome.org/script/dettaglio.php?id_molecule=%s",
      "identifier": "160",
      "link_is_explicit": "true",
      "name": "Allergome; a platform for allergen knowledge",
      "prefix": "Allergome"
    }
  },
  "alzforum.mutation": {
    "description": "Alzforum mutations is a repository of genes and rare variants associated with Alzheimer's disease.",
    "example": "app-d678n-tottori",
    "name": "Alzforum Mutations",
    "synonyms": [
      "Alzforum_mut"
    ],
    "url": "https://www.alzforum.org/mutations/$1"
  },
  "amoebadb": {
    "mappings": {
      "miriam": "amoebadb",
      "n2t": "amoebadb",
      "prefixcommons": "AMOEBADB"
    },
    "miriam": {
      "deprecated": false,
      "description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "http://amoebadb.org/amoeba/",
      "id": "00000148",
      "name": "AmoebaDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^EDI_\\d+$",
      "prefix": "amoebadb",
      "provider_url": "https://amoebadb.org/amoeba/app/record/gene/$1",
      "sampleId": "EDI_244000"
    },
    "n2t": {
      "description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "EDI_244000",
      "homepage": "http://amoebadb.org/amoeba/",
      "name": "AmoebaDB at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^EDI_\\d+$",
      "prefix": "amoebadb",
      "provider_url": "https://amoebadb.org/amoeba/app/record/gene/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/amoebadb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AMOEBADB"
    }
  },
  "amphx": {
    "bioportal": {
      "name": "The Amphioxus Development and Anatomy Ontology",
      "prefix": "AMPHX"
    },
    "mappings": {
      "bioportal": "AMPHX",
      "obofoundry": "amphx",
      "ols": "amphx"
    },
    "obofoundry": {
      "contact": "hescriva@obs-banyuls.fr",
      "contact.label": "Hector Escriva",
      "deprecated": false,
      "description": "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).",
      "download.obo": "http://purl.obolibrary.org/obo/amphx.obo",
      "download.owl": "http://purl.obolibrary.org/obo/amphx.owl",
      "homepage": "https://github.com/EBISPOT/amphx_ontology",
      "license": "CC-BY",
      "name": "The Amphioxus Development and Anatomy Ontology",
      "prefix": "amphx"
    },
    "ols": {
      "description": "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).",
      "download": "https://raw.githubusercontent.com/EBISPOT/amphx_ontology/master/amphx.owl",
      "homepage": "https://github.com/EBISPOT/amphx_ontology",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Amphioxus Development and Anatomy Ontology (AMPHX)",
      "prefix": "amphx",
      "version": "2020-12-18",
      "version.iri": "http://purl.obolibrary.org/obo/amphx/releases/2020-12-18/amphx.owl"
    }
  },
  "antibodyregistry": {
    "mappings": {
      "miriam": "antibodyregistry",
      "n2t": "antibodyregistry",
      "prefixcommons": "ANTIBODYREGISTRY"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.",
      "homepage": "http://antibodyregistry.org/",
      "id": "00000516",
      "name": "Antibody Registry",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{6}$",
      "prefix": "antibodyregistry",
      "provider_url": "http://antibodyregistry.org/AB_$1",
      "sampleId": "493771"
    },
    "n2t": {
      "description": "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.",
      "example": "493771",
      "homepage": "http://antibodyregistry.org/",
      "name": "Antibody Registry at University of California",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{6}$",
      "prefix": "antibodyregistry",
      "provider_url": "http://antibodyregistry.org/AB_$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/antibodyregistry/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ANTIBODYREGISTRY"
    }
  },
  "antweb": {
    "mappings": {
      "miriam": "antweb",
      "n2t": "antweb",
      "ncbi": "AntWeb",
      "prefixcommons": "ANTWEB"
    },
    "miriam": {
      "deprecated": false,
      "description": "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.",
      "homepage": "http://www.antweb.org/",
      "id": "00000146",
      "name": "AntWeb",
      "namespaceEmbeddedInLui": false,
      "pattern": "^casent\\d+(\\-D\\d+)?$",
      "prefix": "antweb",
      "provider_url": "http://www.antweb.org/specimen.do?name=$1",
      "sampleId": "casent0106247"
    },
    "n2t": {
      "description": "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.",
      "example": "casent0106247",
      "homepage": "http://www.antweb.org/",
      "name": "AntWeb at California Academy of Sciences",
      "namespaceEmbeddedInLui": false,
      "pattern": "^casent\\d+(\\-D\\d+)?$",
      "prefix": "antweb",
      "provider_url": "http://www.antweb.org/specimen.do?name=$1"
    },
    "ncbi": {
      "example": "CASENT0058943-D01",
      "homepage": "http://www.antweb.org",
      "name": "Ant Database",
      "prefix": "AntWeb"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/antweb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ANTWEB"
    }
  },
  "aop": {
    "mappings": {
      "miriam": "aop",
      "n2t": "aop",
      "prefixcommons": "AOP"
    },
    "miriam": {
      "deprecated": false,
      "description": "International repository of Adverse Outcome Pathways.",
      "homepage": "https://aopwiki.org/",
      "id": "00000617",
      "name": "AOPWiki",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aop",
      "provider_url": "https://aopwiki.org/aops/$1",
      "sampleId": "98"
    },
    "n2t": {
      "description": "International repository of Adverse Outcome Pathways.",
      "example": "98",
      "homepage": "https://aopwiki.org/",
      "name": "AOPWiki",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aop",
      "provider_url": "https://aopwiki.org/aops/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/aop/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AOP"
    }
  },
  "aop.events": {
    "mappings": {
      "miriam": "aop.events",
      "n2t": "aop.events",
      "prefixcommons": "AOP.EVENTS"
    },
    "miriam": {
      "deprecated": false,
      "description": "International repository of Adverse Outcome Pathways.",
      "homepage": "https://aopwiki.org/",
      "id": "00000652",
      "name": "AOPWiki (Key Event)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aop.events",
      "provider_url": "https://aopwiki.org/events/$1",
      "sampleId": "3"
    },
    "n2t": {
      "description": "International repository of Adverse Outcome Pathways.",
      "example": "3",
      "homepage": "https://aopwiki.org/",
      "name": "AOPWiki (Key Event)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aop.events",
      "provider_url": "https://aopwiki.org/events/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/aop.events/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AOP.EVENTS"
    }
  },
  "aop.relationships": {
    "mappings": {
      "miriam": "aop.relationships",
      "n2t": "aop.relationships",
      "prefixcommons": "AOP.RELATIONSHIPS"
    },
    "miriam": {
      "deprecated": false,
      "description": "International repository of Adverse Outcome Pathways.",
      "homepage": "https://aopwiki.org/",
      "id": "00000653",
      "name": "AOPWiki (Key Event Relationship)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aop.relationships",
      "provider_url": "https://aopwiki.org/relationships/$1",
      "sampleId": "5"
    },
    "n2t": {
      "description": "International repository of Adverse Outcome Pathways.",
      "example": "5",
      "homepage": "https://aopwiki.org/",
      "name": "AOPWiki (Key Event Relationship)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aop.relationships",
      "provider_url": "https://aopwiki.org/relationships/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/aop.relationships/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AOP.RELATIONSHIPS"
    }
  },
  "aop.stressor": {
    "mappings": {
      "miriam": "aop.stressor",
      "n2t": "aop.stressor",
      "prefixcommons": "AOP.STRESSOR"
    },
    "miriam": {
      "deprecated": false,
      "description": "International repository of Adverse Outcome Pathways.",
      "homepage": "https://aopwiki.org/",
      "id": "00000654",
      "name": "AOPWiki (Stressor)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aop.stressor",
      "provider_url": "https://aopwiki.org/stressors/$1",
      "sampleId": "9"
    },
    "n2t": {
      "description": "International repository of Adverse Outcome Pathways.",
      "example": "9",
      "homepage": "https://aopwiki.org/",
      "name": "AOPWiki (Stressor)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "aop.stressor",
      "provider_url": "https://aopwiki.org/stressors/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/aop.stressor/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AOP.STRESSOR"
    }
  },
  "apd": {
    "mappings": {
      "miriam": "apd",
      "n2t": "apd",
      "prefixcommons": "APD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.",
      "homepage": "http://aps.unmc.edu/AP/",
      "id": "00000278",
      "name": "APD",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{5}$",
      "prefix": "apd",
      "provider_url": "http://aps.unmc.edu/AP/database/query_output.php?ID=$1",
      "sampleId": "01001"
    },
    "n2t": {
      "description": "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.",
      "example": "01001",
      "homepage": "http://aps.unmc.edu/AP/",
      "name": "APD at Nebraska",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{5}$",
      "prefix": "apd",
      "provider_url": "http://aps.unmc.edu/AP/database/query_output.php?ID=$1"
    },
    "name": "Antimicrobial Peptide Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/apd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "APD"
    }
  },
  "aphidbase.transcript": {
    "mappings": {
      "miriam": "aphidbase.transcript",
      "n2t": "aphidbase.transcript",
      "prefixcommons": "APHIDBASE.TRANSCRIPT"
    },
    "miriam": {
      "deprecated": false,
      "description": "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.",
      "homepage": "http://www.aphidbase.com/aphidbase",
      "id": "00000393",
      "name": "AphidBase Transcript",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ACYPI\\d{6}(-RA)?$",
      "prefix": "aphidbase.transcript",
      "provider_url": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1",
      "sampleId": "ACYPI000159"
    },
    "n2t": {
      "description": "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.",
      "example": "ACYPI000159",
      "homepage": "http://www.aphidbase.com/aphidbase",
      "name": "AphidBase at INRA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ACYPI\\d{6}(-RA)?$",
      "prefix": "aphidbase.transcript",
      "provider_url": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/aphidbase.transcript/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "APHIDBASE.TRANSCRIPT"
    }
  },
  "apid.interactions": {
    "mappings": {
      "miriam": "apid.interactions",
      "n2t": "apid.interactions",
      "prefixcommons": "APID.INTERACTIONS"
    },
    "miriam": {
      "deprecated": false,
      "description": "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous  organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on  quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.",
      "homepage": "http://cicblade.dep.usal.es:8080/APID/",
      "id": "00000576",
      "name": "APID Interactomes",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$",
      "prefix": "apid.interactions",
      "provider_url": "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1",
      "sampleId": "P01116"
    },
    "n2t": {
      "description": "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous  organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on  quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.",
      "example": "P01116",
      "homepage": "http://cicblade.dep.usal.es:8080/APID/",
      "name": "APID at Salamanca",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$",
      "prefix": "apid.interactions",
      "provider_url": "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/apid.interactions/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "APID.INTERACTIONS"
    },
    "provides": "uniprot",
    "type": "provider"
  },
  "apo": {
    "bioportal": {
      "name": "Ascomycete Phenotype Ontology",
      "prefix": "APO"
    },
    "example": "0000184",
    "mappings": {
      "bioportal": "APO",
      "obofoundry": "ypo",
      "ols": "apo",
      "prefixcommons": "YPO"
    },
    "obofoundry": {
      "contact": "cherry@genome.stanford.edu",
      "contact.label": "Mike Cherry",
      "deprecated": true,
      "homepage": "http://www.yeastgenome.org/",
      "name": "Yeast phenotypes",
      "prefix": "ypo"
    },
    "ols": {
      "description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi",
      "download": "http://purl.obolibrary.org/obo/apo.owl",
      "homepage": "http://www.yeastgenome.org/",
      "name": "Ascomycete phenotype ontology",
      "prefix": "apo",
      "version": "2020-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2020-03-10/apo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/YPO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "YPO"
    },
    "synonyms": [
      "YPO"
    ],
    "url": "https://www.yeastgenome.org/observable/APO:$1"
  },
  "apollo_sv": {
    "bioportal": {
      "name": "Apollo Structured Vocabulary",
      "prefix": "APOLLO-SV"
    },
    "mappings": {
      "bioportal": "APOLLO-SV",
      "obofoundry": "apollo_sv",
      "ols": "apollo_sv"
    },
    "obofoundry": {
      "contact": "MBrochhausen@uams.edu",
      "contact.label": "Mathias Brochhausen",
      "deprecated": false,
      "description": "Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models",
      "download.owl": "http://purl.obolibrary.org/obo/apollo_sv.owl",
      "homepage": "https://github.com/ApolloDev/apollo-sv",
      "license": "CC-BY 3.0",
      "name": "Apollo Structured Vocabulary",
      "prefix": "apollo_sv"
    },
    "ols": {
      "description": "Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models",
      "download": "http://purl.obolibrary.org/obo/apollo_sv.owl",
      "homepage": "https://github.com/ApolloDev/apollo-sv",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Apollo Structured Vocabulary (Apollo-SV)",
      "prefix": "apollo_sv",
      "version": "4.1.1",
      "version.iri": "http://purl.obolibrary.org/obo/apollo_sv/v4.1.1./apollo_sv.owl"
    }
  },
  "arachnoserver": {
    "mappings": {
      "miriam": "arachnoserver",
      "n2t": "arachnoserver",
      "prefixcommons": "ARACHNOSERVER",
      "uniprot": "ArachnoServer",
      "uniprot.database": "ArachnoServer"
    },
    "miriam": {
      "deprecated": false,
      "description": "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information.",
      "homepage": "http://www.arachnoserver.org/",
      "id": "00000193",
      "name": "ArachnoServer",
      "namespaceEmbeddedInLui": false,
      "pattern": "^AS\\d{6}$",
      "prefix": "arachnoserver",
      "provider_url": "http://www.arachnoserver.org/toxincard.html?id=$1",
      "sampleId": "AS000060"
    },
    "n2t": {
      "description": "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information.",
      "example": "AS000060",
      "homepage": "http://www.arachnoserver.org/",
      "name": "ArachnoServer at Brisbane",
      "namespaceEmbeddedInLui": false,
      "pattern": "^AS\\d{6}$",
      "prefix": "arachnoserver",
      "provider_url": "http://www.arachnoserver.org/toxincard.html?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/arachnoserver/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ARACHNOSERVER"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "http://www.arachnoserver.org",
      "identifier": "145",
      "link_is_explicit": "true",
      "name": "ArachnoServer: Spider toxin database",
      "prefix": "ArachnoServer"
    }
  },
  "araport": {
    "homepage": "https://www.araport.org/",
    "mappings": {
      "ncbi": "Araport",
      "uniprot": "Araport",
      "uniprot.database": "Araport"
    },
    "name": "Arabidopsis Information Portal",
    "ncbi": {
      "example": "AT1G01010",
      "homepage": "https://www.araport.org/",
      "name": "Arabidopsis Information Portal",
      "prefix": "Araport"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://bar.utoronto.ca/thalemine/portal.do?externalids=%s",
      "identifier": "221",
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      "description": "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences.",
      "homepage": "http://www.atcc.org/",
      "id": "00000284",
      "name": "ATCC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "atcc",
      "provider_url": "http://www.lgcstandards-atcc.org/Products/All/$1.aspx",
      "sampleId": "11303"
    },
    "n2t": {
      "description": "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences.",
      "example": "11303",
      "homepage": "http://www.atcc.org/",
      "name": "ATCC in Virginia",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "atcc",
      "provider_url": "http://www.lgcstandards-atcc.org/Products/All/$1.aspx"
    },
    "name": "American Type Culture Collection",
    "ncbi": {
      "example": "123456",
      "homepage": "http://www.atcc.org/",
      "name": "American Type Culture Collection database",
      "prefix": "ATCC"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/atcc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ATCC"
    },
    "synonyms": [
      "ATCC number",
      "ATCC",
      "ATCC(in host)",
      "ATCC(dna)"
    ],
    "url": "https://www.atcc.org/products/$1"
  },
  "atcvet": {
    "mappings": {
      "miriam": "atcvet",
      "n2t": "atcvet",
      "prefixcommons": "ATCVET"
    },
    "miriam": {
      "deprecated": false,
      "description": "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.",
      "homepage": "http://www.whocc.no/atcvet/atcvet_index/",
      "id": "00000267",
      "name": "Anatomical Therapeutic Chemical Vetinary",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Q[A-Z0-9]+$",
      "prefix": "atcvet",
      "provider_url": "http://www.whocc.no/atcvet/atcvet_index/?code=$1",
      "sampleId": "QJ51RV02"
    },
    "n2t": {
      "description": "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.",
      "example": "QJ51RV02",
      "homepage": "http://www.whocc.no/atcvet/atcvet_index/",
      "name": "Anatomical Therapeutic Chemical Vet Index at WHO",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Q[A-Z0-9]+$",
      "prefix": "atcvet",
      "provider_url": "http://www.whocc.no/atcvet/atcvet_index/?code=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/atcvet/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ATCVET"
    }
  },
  "atfdb.family": {
    "mappings": {
      "miriam": "atfdb.family",
      "n2t": "atfdb.family",
      "prefixcommons": "ATFDB.FAMILY"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.",
      "homepage": "http://www.bioguo.org/AnimalTFDB/family_index.php",
      "id": "00000316",
      "name": "Animal TFDB Family",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "atfdb.family",
      "provider_url": "http://www.bioguo.org/AnimalTFDB/family.php?fam=$1",
      "sampleId": "CUT"
    },
    "n2t": {
      "description": "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.",
      "example": "CUT",
      "homepage": "http://www.bioguo.org/AnimalTFDB/family_index.php",
      "name": "Animal TFDB at Hubei Bioinformatics & Molecular Imaging Key Laboratory",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "atfdb.family",
      "provider_url": "http://www.bioguo.org/AnimalTFDB/family.php?fam=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/atfdb.family/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ATFDB.FAMILY"
    }
  },
  "ato": {
    "bioportal": {
      "name": "Amphibian Taxonomy Ontology",
      "prefix": "ATO"
    },
    "mappings": {
      "bioportal": "ATO",
      "obofoundry": "ato",
      "prefixcommons": "ATO"
    },
    "obofoundry": {
      "contact": "David Blackburn",
      "contact.label": "david.c.blackburn@gmail.com",
      "deprecated": true,
      "homepage": "http://www.amphibanat.org",
      "name": "Amphibian taxonomy",
      "prefix": "ato"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ATO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ATO"
    }
  },
  "atol": {
    "bioportal": {
      "name": "Animal Trait Ontology for Livestock",
      "prefix": "ATOL"
    },
    "mappings": {
      "bioportal": "ATOL",
      "ols": "atol"
    },
    "ols": {
      "contact": "pylebail@rennes.inra.fr",
      "description": "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production.",
      "download": "http://www.atol-ontology.com/public/telechargement/atol.owl",
      "homepage": "http://www.atol-ontology.com",
      "name": "Animal Trait Ontology for Livestock",
      "prefix": "atol",
      "version": "2018-09-13"
    }
  },
  "autdb": {
    "mappings": {
      "miriam": "autdb",
      "n2t": "autdb",
      "prefixcommons": "AUTDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder.",
      "homepage": "http://autism.mindspec.org/autdb/",
      "id": "00000415",
      "name": "AutDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]+[A-Z-0-9]{2,}$",
      "prefix": "autdb",
      "provider_url": "http://autism.mindspec.org/GeneDetail/$1",
      "sampleId": "ADA"
    },
    "n2t": {
      "description": "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder.",
      "example": "ADA",
      "homepage": "http://autism.mindspec.org/autdb/",
      "name": "AutDB at MindSpec",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]+[A-Z-0-9]{2,}$",
      "prefix": "autdb",
      "provider_url": "http://autism.mindspec.org/GeneDetail/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/autdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "AUTDB"
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  },
  "bacdive": {
    "mappings": {
      "miriam": "bacdive",
      "n2t": "bacdive"
    },
    "miriam": {
      "deprecated": false,
      "description": "BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.",
      "homepage": "https://bacdive.dsmz.de/",
      "id": "00000676",
      "name": "Bacterial Diversity Metadatabase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "bacdive",
      "provider_url": "https://bacdive.dsmz.de/strain/$1",
      "sampleId": "131392"
    },
    "n2t": {
      "description": "BacDive&#x2014;the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.",
      "example": "131392",
      "homepage": "https://bacdive.dsmz.de/",
      "name": "Bacterial Diversity Metadatabase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "bacdive",
      "provider_url": "https://bacdive.dsmz.de/strain/$1"
    }
  },
  "bacmap.biog": {
    "mappings": {
      "miriam": "bacmap.biog",
      "n2t": "bacmap.biog",
      "prefixcommons": "BACMAP.BIOG"
    },
    "miriam": {
      "deprecated": false,
      "description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information.",
      "homepage": "http://bacmap.wishartlab.com/",
      "id": "00000361",
      "name": "BacMap Biography",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bacmap.biog",
      "provider_url": "http://bacmap.wishartlab.com/organisms/$1",
      "sampleId": "1050"
    },
    "n2t": {
      "description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information.",
      "example": "1050",
      "homepage": "http://bacmap.wishartlab.com/",
      "name": "BacMap Biography at University of Alberta",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bacmap.biog",
      "provider_url": "http://bacmap.wishartlab.com/organisms/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/bacmap.biog/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BACMAP.BIOG"
    }
  },
  "bacmap.map": {
    "mappings": {
      "miriam": "bacmap.map",
      "n2t": "bacmap.map",
      "prefixcommons": "BACMAP.MAP"
    },
    "miriam": {
      "deprecated": false,
      "description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information.",
      "homepage": "http://bacmap.wishartlab.com/",
      "id": "00000416",
      "name": "BacMap Map",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\_)?\\d+(\\.\\d+)?$",
      "prefix": "bacmap.map",
      "provider_url": "http://bacmap.wishartlab.com/maps/$1/index.html",
      "sampleId": "AP011135"
    },
    "n2t": {
      "description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information.",
      "example": "AP011135",
      "homepage": "http://bacmap.wishartlab.com/",
      "name": "BacMap Genome Map at University of Alberta",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\_)?\\d+(\\.\\d+)?$",
      "prefix": "bacmap.map",
      "provider_url": "http://bacmap.wishartlab.com/maps/$1/index.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/bacmap.map/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BACMAP.MAP"
    }
  },
  "bactibase": {
    "description": "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria.",
    "example": "BAC045",
    "homepage": "http://bactibase.hammamilab.org",
    "name": "Bactibase: a database dedicated to bacteriocins",
    "url": "http://bactibase.hammamilab.org/$1"
  },
  "bams": {
    "deprecated": true,
    "description": "BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions.",
    "homepage": "https://bams1.org",
    "name": "Brain Architecture Knowledge Management System Neuroanatomical Ontology",
    "references": [
      "https://www.frontiersin.org/articles/10.3389/neuro.11.002.2008/full"
    ]
  },
  "bao": {
    "bioportal": {
      "name": "BioAssay Ontology",
      "prefix": "BAO"
    },
    "mappings": {
      "bioportal": "BAO",
      "miriam": "bao",
      "n2t": "bao",
      "ols": "bao",
      "prefixcommons": "BAO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.",
      "homepage": "https://bioportal.bioontology.org/ontologies/BAO/",
      "id": "00000597",
      "name": "BioAssay Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{7}$",
      "prefix": "bao",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/bao/terms?obo_id=BAO:$1",
      "sampleId": "0002989"
    },
    "n2t": {
      "description": "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.",
      "example": "0002989",
      "homepage": "http://bioportal.bioontology.org/ontologies/BAO/",
      "name": "BioAssay Ontology through BioPortal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{7}$",
      "prefix": "bao",
      "provider_url": "http://bioportal.bioontology.org/ontologies/BAO/bao:BAO_$1"
    },
    "ols": {
      "description": "The BioAssay Ontology (BAO) describes biological screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 700 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation.",
      "download": "http://www.bioassayontology.org/bao/",
      "homepage": "http://bioassayontology.org",
      "license": "https://creativecommons.org/licenses/by-sa/4.0/",
      "name": "BioAssay Ontology",
      "prefix": "bao",
      "version": "2.7.2",
      "version.iri": "http://www.bioassayontology.org/bao/bao_complete.owl"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/bao/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BAO"
    },
    "synonyms": [
      "BAO"
    ]
  },
  "bcgo": {
    "bioportal": {
      "name": "Breast Cancer Grading Ontology",
      "prefix": "BCGO"
    },
    "cellosaurus": {
      "category": "Ontologies",
      "homepage": "https://github.com/obi-bcgo/bcgo",
      "name": "Beta Cell Genomics Ontology",
      "prefix": "BCGO",
      "url": "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/$1"
    },
    "mappings": {
      "bioportal": "BCGO",
      "cellosaurus": "BCGO",
      "obofoundry": "bcgo",
      "prefixcommons": "BCGO"
    },
    "obofoundry": {
      "contact": "jiezheng@pennmedicine.upenn.edu",
      "contact.label": "Jie Zheng",
      "deprecated": true,
      "description": "An application ontology built for beta cell genomics studies.",
      "download.owl": "http://purl.obolibrary.org/obo/bcgo.owl",
      "homepage": "https://github.com/obi-bcgo/bcgo",
      "license": "CC-BY",
      "name": "Beta Cell Genomics Ontology",
      "prefix": "bcgo"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/BCGO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "BCGO"
    }
  },
  "bcio": {
    "bioportal": {
      "name": "Brain-Computer Interaction (BCI) Ontology",
      "prefix": "BCI-O"
    },
    "mappings": {
      "bioportal": "BCI-O",
      "ols": "bcio"
    },
    "ols": {
      "description": "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation.",
      "download": "http://humanbehaviourchange.org/ontology/bcio.owl",
      "homepage": "https://www.humanbehaviourchange.org/",
      "name": "The Behaviour Change Intervention Ontology",
      "prefix": "bcio",
      "version": "2020-12-15",
      "version.iri": "http://humanbehaviourchange.org/ontology/bcio.owl/2021-01-28"
    }
  },
  "bco": {
    "bioportal": {
      "name": "Biological Collections Ontology",
      "prefix": "BCO"
    },
    "mappings": {
      "bioportal": "BCO",
      "obofoundry": "bco",
      "ols": "bco",
      "prefixcommons": "BCO"
    },
    "obofoundry": {
      "contact": "rlwalls2008@gmail.com",
      "contact.label": "Ramona Walls",
      "deprecated": false,
      "description": "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.",
      "download.owl": "http://purl.obolibrary.org/obo/bco.owl",
      "homepage": "https://github.com/tucotuco/bco",
      "license": "CC-0",
      "name": "Biological Collections Ontology",
      "prefix": "bco"
    },
    "ols": {
      "description": "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.",
      "download": "http://purl.obolibrary.org/obo/bco.owl",
      "homepage": "https://github.com/tucotuco/bco",
      "license": "http://creativecommons.org/publicdomain/zero/1.0/",
      "name": "Biological Collections Ontology",
      "prefix": "bco",
      "version": "2020-03-27",
      "version.iri": "http://purl.obolibrary.org/obo/bco/releases/2020-03-27/bco.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/BCO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "BCO"
    }
  },
  "bdgp.est": {
    "mappings": {
      "miriam": "bdgp.est",
      "n2t": "bdgp.est",
      "ncbi": "BDGP_EST",
      "prefixcommons": "BDGP.EST"
    },
    "miriam": {
      "deprecated": false,
      "description": "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI).",
      "homepage": "https://www.ncbi.nlm.nih.gov/dbEST/index.html",
      "id": "00000285",
      "name": "BDGP EST",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\.)?(\\d+)?$",
      "prefix": "bdgp.est",
      "provider_url": "https://www.ncbi.nlm.nih.gov/nucest/$1",
      "sampleId": "EY223054.1"
    },
    "n2t": {
      "description": "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI).",
      "example": "EY223054.1",
      "homepage": "https://www.ncbi.nlm.nih.gov/dbEST/index.html",
      "name": "BDGP EST at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\.)?(\\d+)?$",
      "prefix": "bdgp.est",
      "provider_url": "https://www.ncbi.nlm.nih.gov/nucest/$1"
    },
    "ncbi": {
      "example": "123456",
      "homepage": "http://www.fruitfly.org/EST/index.shtml",
      "name": "Berkeley Drosophila Genome Project EST database",
      "prefix": "BDGP_EST"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/bdgp.est/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BDGP.EST"
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  },
  "bdgp.insertion": {
    "mappings": {
      "miriam": "bdgp.insertion",
      "n2t": "bdgp.insertion",
      "prefixcommons": "BDGP.INSERTION"
    },
    "miriam": {
      "deprecated": false,
      "description": "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element.",
      "homepage": "http://flypush.imgen.bcm.tmc.edu/pscreen/",
      "id": "00000156",
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      "sampleId": "KG09531"
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      "description": "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element.",
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      "name": "BDGP Gene Disruption Project",
      "namespaceEmbeddedInLui": false,
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      "description": "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research.",
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      "contact.label": "Barry Smith",
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      "license": "CC-BY",
      "name": "Basic Formal Ontology",
      "prefix": "bfo"
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      "description": "The upper level ontology upon which OBO Foundry ontologies are built.",
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      "prefix": "bfo",
      "version": "2019-08-26",
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      "is_obo": true,
      "prefix": "BFO"
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      "name": "Bgee gene",
      "namespaceEmbeddedInLui": false,
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      "description": "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.",
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      "is_identifiers": true,
      "is_obo": false,
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    "n2t": {
      "description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.",
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      "homepage": "http://bgee.unil.ch/bgee/bgee",
      "name": "Bgee at Lausanne",
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      "description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.",
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      "namespaceEmbeddedInLui": false,
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      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BGEE.STAGE"
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    "url": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1"
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      "description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.",
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      "description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.",
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      "link_is_explicit": "true",
      "name": "BindingDB database of measured binding affinities",
      "prefix": "BindingDB"
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      "description": "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.",
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      "sampleId": "h_aktPathway"
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      "description": "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.",
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      "name": "BioCarta Pathway at NCI",
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      "pattern": "^([hm]\\_)?\\w+Pathway$",
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      "formatter": "http://identifiers.org/biocarta.pathway/$1",
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      "prefix": "BIOCARTA.PATHWAY"
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      "deprecated": false,
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      "id": "00000140",
      "name": "BioCatalogue",
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      "name": "BioCatalogue at EMBL-EBI",
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      "uniprot.database": "BioCyc"
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      "deprecated": false,
      "description": "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.",
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      "id": "00000194",
      "name": "BioCyc",
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      "sampleId": "ECOLI:CYT-D-UBIOX-CPLX"
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      "homepage": "http://biocyc.org",
      "name": "BioCyc at SRI International",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$",
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      "is_obo": false,
      "prefix": "BIOCYC"
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    "uniprot": {
      "category": "Enzyme and pathway databases",
      "formatter": "https://biocyc.org/getid?id=%s",
      "identifier": "5",
      "link_is_explicit": "true",
      "name": "BioCyc Collection of Pathway/Genome Databases",
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      "deprecated": false,
      "description": "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.",
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      "id": "00000058",
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      "provider_url": "http://thebiogrid.org/$1",
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      "description": "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.",
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      "is_identifiers": false,
      "is_obo": false,
      "prefix": "BIOGRID"
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    "uniprot": {
      "category": "Protein-protein interaction databases",
      "formatter": "https://thebiogrid.org/%s",
      "identifier": "184",
      "link_is_explicit": "true",
      "name": "The Biological General Repository for Interaction Datasets (BioGRID)",
      "prefix": "BioGRID"
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  "biogrid.interaction": {
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    "description": "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.",
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    "name": "BioGRID Interactions",
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      "sampleId": "Gene"
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    "n2t": {
      "description": "Database of the dielectric properties of biological tissues.",
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      "homepage": "https://datalab.rwth-aachen.de/MINDER",
      "name": "Bio-MINDER Tissue Database",
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      "is_obo": false,
      "prefix": "BIOMINDER"
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    "go": {
      "formatter": "https://www.ebi.ac.uk/biomodels/$1",
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      "name": "BioModels Database",
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      "synonyms": [
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      "go": "BIOMD",
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    "miriam": {
      "deprecated": false,
      "description": "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.",
      "homepage": "https://www.ebi.ac.uk/biomodels/",
      "id": "00000007",
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      "prefix": "biomodels.db",
      "provider_url": "https://www.ebi.ac.uk/biomodels/$1",
      "sampleId": "BIOMD0000000048"
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    "n2t": {
      "description": "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.",
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      "homepage": "https://www.ebi.ac.uk/biomodels/",
      "name": "BioModels Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$",
      "prefix": "biomodels.db",
      "provider_url": "https://www.ebi.ac.uk/biomodels/$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/biomodels.db/$1",
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      "prefix": "BIOMODELS.DB"
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    "synonyms": [
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      "prefixcommons": "KISAO"
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    "miriam": {
      "deprecated": false,
      "description": "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.",
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      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/kisao/terms?short_form=$1",
      "sampleId": "KISAO_0000057"
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    "n2t": {
      "description": "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.",
      "example": "KISAO_0000057",
      "homepage": "http://bioportal.bioontology.org/ontologies/KISAO",
      "name": "KiSAO via NCBO's Bioportal",
      "namespaceEmbeddedInLui": false,
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      "prefix": "biomodels.kisao",
      "provider_url": "http://purl.bioontology.org/ontology/KISAO/kisao:$1"
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    "obofoundry": {
      "contact": "biomodels-net-support@lists.sf.net",
      "contact.label": "The Biomodels.net team",
      "deprecated": false,
      "description": "A classification of algorithms available for the simulation of models in biology.",
      "download.owl": "http://purl.obolibrary.org/obo/kisao.owl",
      "homepage": "http://co.mbine.org/standards/kisao",
      "license": "Artistic License 2.0",
      "name": "Kinetic Simulation Algorithm Ontology",
      "prefix": "kisao"
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    "ols": {
      "description": "A classification of algorithms available for the simulation of models in biology.",
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      "homepage": "http://co.mbine.org/standards/kisao",
      "name": "Kinetic Simulation Algorithm Ontology",
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      "version": "2.14"
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    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/KISAO_$1",
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      "is_obo": true,
      "prefix": "KISAO"
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    "synonyms": [
      "kisao"
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  "biomodels.teddy": {
    "bioportal": {
      "name": "Terminology for the Description of Dynamics",
      "prefix": "TEDDY"
    },
    "mappings": {
      "bioportal": "TEDDY",
      "miriam": "biomodels.teddy",
      "n2t": "biomodels.teddy",
      "ols": "teddy",
      "prefixcommons": "BIOMODELS.TEDDY"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/teddy",
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      "name": "TEDDY",
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      "pattern": "^TEDDY_\\d{7}$",
      "prefix": "biomodels.teddy",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?short_form=$1",
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    "n2t": {
      "description": "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.",
      "example": "TEDDY_0000066",
      "homepage": "http://teddyontology.sourceforge.net/",
      "name": "TEDDY through BioPortal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TEDDY_\\d{7}$",
      "prefix": "biomodels.teddy",
      "provider_url": "http://purl.bioontology.org/ontology/TEDDY/$1"
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    "ols": {
      "description": "TEDDY is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems and Synthetic Biology.",
      "download": "http://www.biomodels.net/teddy/TEDDY",
      "name": "Terminology for Description of Dynamics",
      "prefix": "teddy",
      "version": "2014-04-24",
      "version.iri": "http://identifiers.org/combine.specifications/teddy.rel-2014-04-24"
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    "prefixcommons": {
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      "is_obo": false,
      "prefix": "BIOMODELS.TEDDY"
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    "synonyms": [
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    "mappings": {
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    "miriam": {
      "deprecated": false,
      "description": "Vocabulary used in the RDF representation of SBML models.",
      "homepage": "http://biomodels.net/rdf/vocabulary.rdf",
      "id": "00000514",
      "name": "SBML RDF Vocabulary",
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      "pattern": "^[A-Za-z]+$",
      "prefix": "biomodels.vocabulary",
      "provider_url": "http://biomodels.net/rdf/vocabulary.rdf#$1",
      "sampleId": "rateRule"
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    "n2t": {
      "description": "Vocabulary used in the RDF representation of SBML models.",
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      "homepage": "http://biomodels.net/rdf/vocabulary.rdf",
      "name": "Vocabulary via BioModels.net",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z]+$",
      "prefix": "biomodels.vocabulary",
      "provider_url": "http://biomodels.net/rdf/vocabulary.rdf#$1"
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      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BIOMODELS.VOCABULARY"
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  "bionumbers": {
    "mappings": {
      "miriam": "bionumbers",
      "n2t": "bionumbers",
      "prefixcommons": "BIONUMBERS"
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    "miriam": {
      "deprecated": false,
      "description": "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data.",
      "homepage": "https://bionumbers.hms.harvard.edu",
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      "name": "BioNumbers",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bionumbers",
      "provider_url": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1",
      "sampleId": "104674"
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    "n2t": {
      "description": "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data.",
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      "homepage": "https://bionumbers.hms.harvard.edu",
      "name": "BioNumbers database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bionumbers",
      "provider_url": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1"
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      "is_obo": false,
      "prefix": "BIONUMBERS"
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    "mappings": {
      "miriam": "bioportal",
      "n2t": "bioportal",
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    "miriam": {
      "deprecated": false,
      "description": "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.",
      "homepage": "http://bioportal.bioontology.org/",
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      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bioportal",
      "provider_url": "http://bioportal.bioontology.org/ontologies/$1",
      "sampleId": "1046"
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      "description": "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Prot&#xE9;g&#xE9; frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.",
      "example": "1046",
      "homepage": "http://bioportal.bioontology.org/",
      "name": "BioPortal at National Center for Biomedical Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
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      "provider_url": "http://bioportal.bioontology.org/ontologies/$1"
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      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BIOPORTAL"
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      "miriam": "bioproject",
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      "prefixcommons": "BIOPROJECT"
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    "miriam": {
      "deprecated": false,
      "description": "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories.",
      "homepage": "https://www.ebi.ac.uk/ena/",
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      "provider_url": "https://www.ebi.ac.uk/ena/data/view/$1",
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      "description": "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project&#x2019;s scope, material, objectives, funding source and general relevance categories.",
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      "homepage": "https://www.ncbi.nlm.nih.gov/bioproject",
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      "is_obo": false,
      "prefix": "BIOPROJECT"
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    "url": "https://www.ncbi.nlm.nih.gov/bioproject/?term=$1"
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  "bioregistry": {
    "contact": "cthoyt@gmail.com",
    "description": "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.",
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    "name": "Bioregistry",
    "url": "https://bioregistry.io/registry/$1"
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  "bioregistry.collection": {
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    "description": "Manually curated collections of resources stored in the bioregistry",
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    "name": "Bioregistry Collections",
    "pattern": "^\\d{7}$",
    "url": "https://bioregistry.io/collection/$1"
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    "description": "The bioRxiv is a preprint server for biology",
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      "homepage": "https://www.biorxiv.org/",
      "name": "bioRxiv",
      "prefix": "bioRxiv",
      "synonyms": [
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      ]
    },
    "homepage": "https://biorxiv.org",
    "mappings": {
      "go": "bioRxiv"
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    "name": "bioRxiv"
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      "category": "Biological sample resources",
      "homepage": "https://www.ncbi.nlm.nih.gov/biosample",
      "name": "BioSample database",
      "prefix": "BioSample",
      "url": "https://www.ncbi.nlm.nih.gov/biosample/?term=$1"
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    "mappings": {
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      "miriam": "biosample",
      "n2t": "biosample",
      "prefixcommons": "BIOSAMPLE"
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    "miriam": {
      "deprecated": false,
      "description": "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.",
      "homepage": "https://www.ebi.ac.uk/biosamples/",
      "id": "00000350",
      "name": "BioSample",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SAM[NED](\\w)?\\d+$",
      "prefix": "biosample",
      "provider_url": "https://www.ebi.ac.uk/biosamples/sample/$1",
      "sampleId": "SAMEA2397676"
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    "n2t": {
      "description": "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.",
      "example": "SAMEA2397676",
      "homepage": "https://www.ebi.ac.uk/biosamples/",
      "name": "BioSamples Database at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SAM[NED](\\w)?\\d+$",
      "prefix": "biosample",
      "provider_url": "https://www.ebi.ac.uk/biosamples/sample/$1"
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      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BIOSAMPLE"
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    "mappings": {
      "miriam": "biosimulators"
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    "miriam": {
      "deprecated": false,
      "description": "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).",
      "homepage": "https://biosimulators.org/",
      "id": "00000767",
      "name": "BioSimulators",
      "namespaceEmbeddedInLui": false,
      "pattern": "[a-zA-Z0-9-_]+",
      "prefix": "biosimulators",
      "provider_url": "https://biosimulators.org/simulators/$1",
      "sampleId": "vcell"
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      "deprecated": false,
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      "homepage": "https://www.ebi.ac.uk/biostudies/",
      "id": "00000694",
      "name": "BioStudies database",
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      "pattern": "^S-[A-Z]{4}[A-Z\\d\\-]+$",
      "prefix": "biostudies",
      "provider_url": "https://www.ebi.ac.uk/biostudies/studies/$1",
      "sampleId": "S-EPMC6266652"
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    "n2t": {
      "description": "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication.",
      "example": "S-EPMC6266652",
      "homepage": "https://www.ebi.ac.uk/biostudies/",
      "name": "BioStudies database",
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      "prefix": "biostudies",
      "provider_url": "https://www.ebi.ac.uk/biostudies/studies/$1"
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      "miriam": "biosystems",
      "n2t": "biosystems",
      "prefixcommons": "BIOSYSTEMS"
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    "miriam": {
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      "homepage": "https://www.ncbi.nlm.nih.gov/biosystems/",
      "id": "00000097",
      "name": "BioSystems",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "biosystems",
      "provider_url": "https://www.ncbi.nlm.nih.gov/biosystems/$1",
      "sampleId": "001"
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    "n2t": {
      "description": "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources.",
      "example": "001",
      "homepage": "https://www.ncbi.nlm.nih.gov/biosystems/",
      "name": "BioSystems database at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "biosystems",
      "provider_url": "https://www.ncbi.nlm.nih.gov/biosystems/$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/biosystems/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BIOSYSTEMS"
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  },
  "biotools": {
    "description": "BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research.",
    "mappings": {
      "miriam": "biotools",
      "n2t": "biotools",
      "prefixcommons": "BIOTOOLS"
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    "miriam": {
      "deprecated": false,
      "description": "Tool and data services registry.",
      "homepage": "https://bio.tools/",
      "id": "00000616",
      "name": "BioTools",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9\\_]*$",
      "prefix": "biotools",
      "provider_url": "https://bio.tools/$1",
      "sampleId": "uniprotkb"
    },
    "n2t": {
      "description": "Tool and data services registry.",
      "example": "uniprotkb",
      "homepage": "https://bio.tools/",
      "name": "BioTools",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9\\_]*$",
      "prefix": "biotools",
      "provider_url": "https://bio.tools/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/biotools/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BIOTOOLS"
    }
  },
  "birnlex": {
    "bioportal": {
      "name": "Biomedical Informatics Research Network Project Lexicon",
      "prefix": "BIRNLEX"
    },
    "comment": "Part of the NeuroLex namespace now",
    "mappings": {
      "bioportal": "BIRNLEX"
    },
    "name": "Biomedical Informatics Research Network Lexicon"
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      "n2t": "bitterdb.cpd",
      "prefixcommons": "BITTERDB.CPD"
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    "miriam": {
      "deprecated": false,
      "description": "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds.",
      "homepage": "http://bitterdb.agri.huji.ac.il/dbbitter.php",
      "id": "00000348",
      "name": "BitterDB Compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bitterdb.cpd",
      "provider_url": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1",
      "sampleId": "46"
    },
    "n2t": {
      "description": "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds.",
      "example": "46",
      "homepage": "http://bitterdb.agri.huji.ac.il/dbbitter.php",
      "name": "BitterDB Compound at The Hebrew University of Jerusalem",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bitterdb.cpd",
      "provider_url": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/bitterdb.cpd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BITTERDB.CPD"
    }
  },
  "bitterdb.rec": {
    "mappings": {
      "miriam": "bitterdb.rec",
      "n2t": "bitterdb.rec",
      "prefixcommons": "BITTERDB.REC"
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    "miriam": {
      "deprecated": false,
      "description": "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors.",
      "homepage": "http://bitterdb.agri.huji.ac.il/dbbitter.php",
      "id": "00000347",
      "name": "BitterDB Receptor",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bitterdb.rec",
      "provider_url": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1",
      "sampleId": "1"
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    "n2t": {
      "description": "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors.",
      "example": "1",
      "homepage": "http://bitterdb.agri.huji.ac.il/dbbitter.php",
      "name": "BitterDB Receptor at The Hebrew University of Jerusalem",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bitterdb.rec",
      "provider_url": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/bitterdb.rec/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BITTERDB.REC"
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  "bmrb": {
    "mappings": {
      "fairsharing": "FAIRsharing.p06nme",
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      "uniprot": "BMRB",
      "uniprot.database": "BMRB"
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    "miriam": {
      "deprecated": false,
      "description": "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.",
      "homepage": "http://www.bmrb.wisc.edu/",
      "id": "00000716",
      "name": "Biological Magnetic Resonance Data Bank",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(bmr|bmse|bmst)?[0-9]{1,6}$",
      "prefix": "bmrb",
      "provider_url": "http://rest.bmrb.wisc.edu/bmrb/$1/html",
      "sampleId": "15000"
    },
    "uniprot": {
      "category": "3D structure databases",
      "formatter": "https://bmrb.io/data_library/summary/protein.php?uniprot=%u",
      "identifier": "256",
      "link_is_explicit": "true",
      "name": "Biological Magnetic Resonance Data Bank",
      "prefix": "BMRB"
    }
  },
  "bmrb.restraint": {
    "description": "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively.",
    "example": "28789",
    "homepage": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet",
    "name": "NMR Restraints Grid",
    "url": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1"
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    "mappings": {
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      "n2t": "bold.taxonomy",
      "ncbi": "BOLD",
      "prefixcommons": "BOLD.TAXONOMY"
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    "miriam": {
      "deprecated": false,
      "description": "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information.",
      "homepage": "http://www.boldsystems.org/",
      "id": "00000158",
      "name": "BOLD Taxonomy",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bold.taxonomy",
      "provider_url": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1",
      "sampleId": "27267"
    },
    "n2t": {
      "description": "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information.",
      "example": "27267",
      "homepage": "http://www.boldsystems.org/",
      "name": "BOLD taxonomy browser",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "bold.taxonomy",
      "provider_url": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1"
    },
    "ncbi": {
      "example": "EPAF263",
      "homepage": "http://www.barcodinglife.com",
      "name": "Barcode of Life database",
      "prefix": "BOLD"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/bold.taxonomy/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BOLD.TAXONOMY"
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    "mappings": {
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      "prefixcommons": "BOOTSTREP"
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    "obofoundry": {
      "contact": "Vivian Lee",
      "contact.label": "vlee@ebi.ac.uk",
      "deprecated": true,
      "homepage": "http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html",
      "name": "Gene Regulation Ontology",
      "prefix": "bootstrep"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/BOOTSTREP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "BOOTSTREP"
    }
  },
  "bpdb": {
    "example": "2404",
    "homepage": "https://sitem.herts.ac.uk/aeru/bpdb/index.htm",
    "name": "Bio-Pesticides DataBase",
    "url": "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm"
  },
  "brenda": {
    "go": {
      "formatter": "https://www.brenda-enzymes.info/enzyme.php?ecno=$1",
      "homepage": "http://www.brenda-enzymes.info",
      "name": "BRENDA, The Comprehensive Enzyme Information System",
      "prefix": "BRENDA"
    },
    "mappings": {
      "go": "BRENDA",
      "miriam": "brenda",
      "n2t": "brenda",
      "prefixcommons": "BRENDA",
      "uniprot": "BRENDA",
      "uniprot.database": "BRENDA"
    },
    "miriam": {
      "deprecated": false,
      "description": "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data.",
      "homepage": "https://www.brenda-enzymes.org/",
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      "name": "BRENDA",
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      "pattern": "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$",
      "prefix": "brenda",
      "provider_url": "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1",
      "sampleId": "1.1.1.1"
    },
    "n2t": {
      "description": "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data.",
      "example": "1.1.1.1",
      "homepage": "https://www.brenda-enzymes.org/",
      "name": "Brenda enzyme database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$",
      "prefix": "brenda",
      "provider_url": "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/brenda/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BRENDA"
    },
    "uniprot": {
      "category": "Enzyme and pathway databases",
      "formatter": "https://www.brenda-enzymes.org/enzyme.php?ecno=%s&UniProtAcc=%u&OrganismID=%d",
      "identifier": "131",
      "link_is_explicit": "true",
      "name": "BRENDA Comprehensive Enzyme Information System",
      "prefix": "BRENDA"
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  "broad": {
    "mappings": {
      "miriam": "broad",
      "n2t": "broad",
      "prefixcommons": "BROAD"
    },
    "miriam": {
      "deprecated": false,
      "description": "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae.",
      "homepage": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/",
      "id": "00000438",
      "name": "Broad Fungal Genome Initiative",
      "namespaceEmbeddedInLui": false,
      "pattern": "^S\\d+$",
      "prefix": "broad",
      "provider_url": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1",
      "sampleId": "S7000002168151102"
    },
    "n2t": {
      "description": "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae.",
      "example": "S7000002168151102",
      "homepage": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/",
      "name": "Broad Fungal Genome Initiative at Broad Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^S\\d+$",
      "prefix": "broad",
      "provider_url": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/broad/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "BROAD"
    }
  },
  "bs": {
    "comment": "part of Sequence Ontology (SO). See https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/master/Ontology_Files/subsets/biosapiens.obo",
    "name": "Biosapiens"
  },
  "bspo": {
    "bioportal": {
      "name": "Spatial Ontology",
      "prefix": "BSPO"
    },
    "download_obo": "https://raw.githubusercontent.com/obophenotype/biological-spatial-ontology/master/bspo.obo",
    "example": "0000029",
    "mappings": {
      "bioportal": "BSPO",
      "obofoundry": "bspo",
      "ols": "bspo",
      "prefixcommons": "BSPO"
    },
    "obofoundry": {
      "contact": "cjmungall@lbl.gov",
      "contact.label": "Chris Mungall",
      "deprecated": false,
      "description": "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces",
      "download.obo": "http://purl.obolibrary.org/obo/bspo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/bspo.owl",
      "homepage": "https://github.com/obophenotype/biological-spatial-ontology",
      "license": "CC-BY",
      "name": "Biological Spatial Ontology",
      "prefix": "bspo"
    },
    "ols": {
      "description": "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces",
      "download": "http://purl.obolibrary.org/obo/bspo.owl",
      "homepage": "https://github.com/obophenotype/biological-spatial-ontology",
      "name": "Biological Spatial Ontology",
      "prefix": "bspo",
      "version": "2020-05-11",
      "version.iri": "http://purl.obolibrary.org/obo/bspo/releases/2020-05-11/bspo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/BSPO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "BSPO"
    }
  },
  "bto": {
    "bioportal": {
      "name": "BRENDA Tissue and Enzyme Source Ontology",
      "prefix": "BTO"
    },
    "cellosaurus": {
      "category": "Ontologies",
      "homepage": "https://bioportal.bioontology.org/ontologies/BTO",
      "name": "BRENDA Tissue Ontology",
      "prefix": "BTO",
      "url": "https://bioportal.bioontology.org/ontologies/BTO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBTO_$1"
    },
    "example": "0000590",
    "go": {
      "description": "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures.",
      "name": "BRENDA tissue / enzyme ontology",
      "prefix": "BTO"
    },
    "mappings": {
      "bioportal": "BTO",
      "cellosaurus": "BTO",
      "go": "BTO",
      "miriam": "bto",
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    },
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      "formatter": "http://identifiers.org/cath.superfamily/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CATH.SUPERFAMILY"
    }
  },
  "cattleqtldb": {
    "mappings": {
      "miriam": "cattleqtldb",
      "n2t": "cattleqtldb",
      "prefixcommons": "CATTLEQTLDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs.",
      "homepage": "https://www.animalgenome.org/QTLdb",
      "id": "00000504",
      "name": "Animal Genome Cattle QTL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cattleqtldb",
      "provider_url": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1",
      "sampleId": "4685"
    },
    "n2t": {
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs.",
      "example": "4685",
      "homepage": "http://www.animalgenome.org/cgi-bin/QTLdb/BT/index",
      "name": "Animal QTL Cattle at Iowa State University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cattleqtldb",
      "provider_url": "http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cattleqtldb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CATTLEQTLDB"
    }
  },
  "cazy": {
    "go": {
      "description": "The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.",
      "formatter": "http://www.cazy.org/$1.html",
      "homepage": "http://www.cazy.org/",
      "name": "Carbohydrate Active EnZYmes",
      "prefix": "CAZY"
    },
    "mappings": {
      "go": "CAZY",
      "miriam": "cazy",
      "n2t": "cazy",
      "prefixcommons": "CAZY",
      "uniprot": "CAZy",
      "uniprot.database": "CAZy"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features.",
      "homepage": "http://www.cazy.org/",
      "id": "00000195",
      "name": "CAZy",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$",
      "prefix": "cazy",
      "provider_url": "http://www.cazy.org/$1.html",
      "sampleId": "GT10"
    },
    "n2t": {
      "description": "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features.",
      "example": "GT10",
      "homepage": "http://www.cazy.org/",
      "name": "CAZy at CNRS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$",
      "prefix": "cazy",
      "provider_url": "http://www.cazy.org/$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cazy/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CAZY"
    },
    "uniprot": {
      "category": "Protein family/group databases",
      "formatter": "http://www.cazy.org/fam/%s.html",
      "identifier": "136",
      "link_is_explicit": "true",
      "name": "Carbohydrate-Active enZymes",
      "prefix": "CAZy"
    }
  },
  "cba": {
    "cellosaurus": {
      "category": "Cell line collections",
      "homepage": "http://www.cellbankaustralia.com/cellbank-australia-exclusive-lines/",
      "name": "CellBank Australia",
      "prefix": "CBA",
      "url": "http://www.cellbankaustralia.com/$1"
    },
    "example": "375364",
    "mappings": {
      "cellosaurus": "CBA"
    },
    "name": "Chinese Biological Abstracts",
    "url": "https://europepmc.org/article/CBA/$1"
  },
  "cbioportal": {
    "mappings": {
      "miriam": "cbioportal",
      "n2t": "cbioportal"
    },
    "miriam": {
      "deprecated": false,
      "description": "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.",
      "homepage": "http://www.cbioportal.org",
      "id": "00000679",
      "name": "The cBioPortal for Cancer Genomics",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z0-9\\_]+$",
      "prefix": "cbioportal",
      "provider_url": "http://www.cbioportal.org/study?id=$1#summary",
      "sampleId": "laml_tcga_pub"
    },
    "n2t": {
      "description": "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.",
      "example": "laml_tcga_pub",
      "homepage": "http://www.cbioportal.org",
      "name": "The cBioPortal for Cancer Genomics",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z0-9\\_]+$",
      "prefix": "cbioportal",
      "provider_url": "http://www.cbioportal.org/study?id=$1#summary"
    }
  },
  "ccdc": {
    "mappings": {
      "miriam": "ccdc"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC.",
      "homepage": "https://www.ccdc.cam.ac.uk/",
      "id": "00000818",
      "name": "CCDC Number",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{6,7}$",
      "prefix": "ccdc",
      "provider_url": "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG",
      "sampleId": "1829126"
    }
  },
  "ccds": {
    "mappings": {
      "miriam": "ccds",
      "n2t": "ccds",
      "prefixcommons": "CCDS",
      "uniprot": "CCDS",
      "uniprot.database": "CCDS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.",
      "homepage": "http://www.ncbi.nlm.nih.gov/CCDS/",
      "id": "00000375",
      "name": "Consensus CDS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CCDS\\d+\\.\\d+$",
      "prefix": "ccds",
      "provider_url": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1",
      "sampleId": "CCDS13573.1"
    },
    "n2t": {
      "description": "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.",
      "example": "CCDS13573.1",
      "homepage": "http://www.ncbi.nlm.nih.gov/CCDS/",
      "name": "Consensus CDS at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CCDS\\d+\\.\\d+$",
      "prefix": "ccds",
      "provider_url": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1"
    },
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "CCDS"
    },
    "uniprot": {
      "category": "Sequence databases",
      "formatter": "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=%s",
      "identifier": "187",
      "link_is_explicit": "true",
      "name": "The Consensus CDS (CCDS) project",
      "prefix": "CCDS"
    }
  },
  "ccle.cell": {
    "cellosaurus": {
      "category": "Cell line databases/resources",
      "homepage": "https://portals.broadinstitute.org/ccle",
      "name": "Cancer Cell Line Encyclopedia",
      "prefix": "CCLE",
      "url": "https://portals.broadinstitute.org/ccle/page?cell_line=$1"
    },
    "example": "BT20_BREAST",
    "homepage": "https://www.cbioportal.org/study/summary?id=ccle_broad_2019",
    "mappings": {
      "cellosaurus": "CCLE"
    },
    "name": "Cancer Cell Line Encyclopedia (CCLE) Cells",
    "synonyms": [
      "ccle"
    ],
    "url": "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1"
  },
  "cco": {
    "bioportal": {
      "name": "Cell Cycle Ontology",
      "prefix": "CCO"
    },
    "mappings": {
      "bioportal": "CCO",
      "miriam": "cco",
      "n2t": "cco",
      "ols": "cco",
      "prefixcommons": "CCO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process.",
      "homepage": "https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=CCO",
      "id": "00000234",
      "name": "Cell Cycle Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^CCO\\:\\w+$",
      "prefix": "cco",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/cco/terms?obo_id=CCO:$1",
      "sampleId": "0000003"
    },
    "n2t": {
      "description": "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process.",
      "example": "0000003",
      "homepage": "https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=CCO",
      "name": "Cell Cycle Ontology through OLS",
      "namespaceEmbeddedInLui": true,
      "pattern": "^CCO\\:\\w+$",
      "prefix": "cco",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/cco/terms?obo_id=CCO:$1"
    },
    "ols": {
      "contact": "vladimir.n.mironov@gmail.com",
      "description": "The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects.",
      "download": "http://www.bio.ntnu.no/ontology/CCO/cco.owl",
      "homepage": "http://www.semantic-systems-biology.org/apo",
      "name": "Cell Cycle Ontology",
      "prefix": "cco",
      "version": "2016-03-23"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cco/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CCO"
    }
  },
  "cdao": {
    "bioportal": {
      "name": "Comparative Data Analysis Ontology",
      "prefix": "CDAO"
    },
    "mappings": {
      "bioportal": "CDAO",
      "obofoundry": "cdao",
      "ols": "cdao",
      "prefixcommons": "CDAO"
    },
    "obofoundry": {
      "contact": "balhoff@renci.org",
      "contact.label": "Jim Balhoff",
      "deprecated": false,
      "description": "a formalization of concepts and relations relevant to evolutionary comparative analysis",
      "download.owl": "http://purl.obolibrary.org/obo/cdao.owl",
      "homepage": "https://github.com/evoinfo/cdao",
      "license": "CC0 1.0 Universal",
      "name": "Comparative Data Analysis Ontology",
      "prefix": "cdao"
    },
    "ols": {
      "description": "The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis.  This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein.  In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units).  The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities.  The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'.  For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'.  The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree.  CDAO provides the framework for representing OTUs, trees, transformations, and characters.  The representation of characters and transformations may depend on imported ontologies for a specific type of character.",
      "download": "http://purl.obolibrary.org/obo/cdao.owl",
      "homepage": "https://github.com/evoinfo/cdao",
      "name": "Comparative Data Analysis Ontology",
      "prefix": "cdao",
      "version": "2019-06-26",
      "version.iri": "http://purl.obolibrary.org/obo/cdao/2019-06-26/cdao.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CDAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CDAO"
    }
  },
  "cdd": {
    "go": {
      "formatter": "http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1",
      "homepage": "https://www.ncbi.nlm.nih.gov/cdd",
      "name": "Conserved Domain Database at NCBI",
      "prefix": "CDD"
    },
    "mappings": {
      "go": "CDD",
      "miriam": "cdd",
      "n2t": "cdd",
      "ncbi": "CDD",
      "prefixcommons": "CDD",
      "uniprot": "CDD",
      "uniprot.database": "CDD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.",
      "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd",
      "id": "00000119",
      "name": "Conserved Domain Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(cd)?\\d{5}$",
      "prefix": "cdd",
      "provider_url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1",
      "sampleId": "cd00400"
    },
    "n2t": {
      "description": "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.",
      "example": "cd00400",
      "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd",
      "name": "Conserved Domain Database at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(cd)?\\d{5}$",
      "prefix": "cdd",
      "provider_url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1"
    },
    "ncbi": {
      "example": "02194",
      "homepage": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml",
      "name": "Conserved Domain Database",
      "prefix": "CDD"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cdd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CDD"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=%s",
      "identifier": "214",
      "link_is_explicit": "true",
      "name": "Conserved Domains Database",
      "prefix": "CDD"
    }
  },
  "cdno": {
    "mappings": {
      "obofoundry": "cdno",
      "ols": "cdno"
    },
    "obofoundry": {
      "contact": "l.andres.hernandez.18@student.scu.edu.au",
      "contact.label": "Liliana Andres Hernandez",
      "deprecated": false,
      "description": "CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet.",
      "download.obo": "http://purl.obolibrary.org/obo/cdno.obo",
      "download.owl": "http://purl.obolibrary.org/obo/cdno.owl",
      "homepage": "https://github.com/Southern-Cross-Plant-Science/cdno",
      "license": "CC-BY",
      "name": "Compositional Dietary Nutrition Ontology",
      "prefix": "cdno"
    },
    "ols": {
      "description": "None",
      "download": "http://purl.obolibrary.org/obo/cdno.owl",
      "homepage": "https://github.com/Southern-Cross-Plant-Science/cdno",
      "license": "unspecified",
      "name": "Crop Dietary Nutrition Ontology",
      "prefix": "cdno",
      "version": "2021-05-30",
      "version.iri": "http://purl.obolibrary.org/obo/cdno/releases/2021-05-30/cdno.owl"
    }
  },
  "cdpd": {
    "mappings": {
      "miriam": "cdpd",
      "n2t": "cdpd",
      "prefixcommons": "CDPD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN).",
      "homepage": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp",
      "id": "00000272",
      "name": "Canadian Drug Product Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cdpd",
      "provider_url": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$1",
      "sampleId": "63250"
    },
    "n2t": {
      "description": "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN).",
      "example": "63250",
      "homepage": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp",
      "name": "Canadian Drug Identification Number at Health Canada",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cdpd",
      "provider_url": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cdpd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CDPD"
    }
  },
  "cellimage": {
    "mappings": {
      "fairsharing": "FAIRsharing.8t18te",
      "miriam": "cellimage",
      "n2t": "cellimage",
      "prefixcommons": "CELLIMAGE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes.",
      "homepage": "http://cellimagelibrary.org/",
      "id": "00000257",
      "name": "Cell Image Library",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cellimage",
      "provider_url": "http://cellimagelibrary.org/images/$1",
      "sampleId": "24801"
    },
    "n2t": {
      "description": "The Cell: An Image Library&#x2122; is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes.",
      "example": "24801",
      "homepage": "http://cellimagelibrary.org/",
      "name": "Cell Image Library at American Society for Cell Biology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cellimage",
      "provider_url": "http://cellimagelibrary.org/images/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cellimage/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CELLIMAGE"
    }
  },
  "cellosaurus": {
    "download_obo": "https://ftp.expasy.org/databases/cellosaurus/cellosaurus.obo",
    "example": "CVCL_0440",
    "mappings": {
      "miriam": "cellosaurus",
      "n2t": "cellosaurus",
      "prefixcommons": "CELLOSAURUS",
      "wikidata": "P3289"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines.",
      "homepage": "https://web.expasy.org/cellosaurus/",
      "id": "00000598",
      "name": "Cellosaurus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CVCL_[A-Z0-9]{4}$",
      "prefix": "cellosaurus",
      "provider_url": "https://web.expasy.org/cellosaurus/$1",
      "sampleId": "CVCL_0030"
    },
    "n2t": {
      "description": "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines.",
      "example": "CVCL_0030",
      "homepage": "https://web.expasy.org/cellosaurus/",
      "name": "Cellosaurus through SIB",
      "namespaceEmbeddedInLui": false,
      "pattern": "CVCL_[A-Z0-9]{4}",
      "prefix": "cellosaurus",
      "provider_url": "https://web.expasy.org/cellosaurus/$1"
    },
    "pattern": "^CVCL_[A-Z0-9]{4}$",
    "prefixcommons": {
      "formatter": "http://identifiers.org/cellosaurus/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CELLOSAURUS"
    },
    "synonyms": [
      "CVCL"
    ],
    "wikidata": {
      "database": "Q24691710",
      "database.homepage": "https://web.expasy.org/cellosaurus/",
      "database.label": "Cellosaurus",
      "format": "https://web.expasy.org/cellosaurus/$1",
      "name": "Cellosaurus ID",
      "pattern": "CVCL_[A-Z\\d][A-Z\\d][A-Z\\d][A-Z\\d]",
      "prefix": "P3289"
    }
  },
  "ceph": {
    "bioportal": {
      "name": "Cephalopod Ontology",
      "prefix": "CEPH"
    },
    "download_obo": "https://raw.githubusercontent.com/obophenotype/cephalopod-ontology/master/ceph.obo",
    "example": "0000109",
    "mappings": {
      "bioportal": "CEPH",
      "obofoundry": "ceph",
      "ols": "ceph",
      "prefixcommons": "CEPH"
    },
    "obofoundry": {
      "contact": "cjmungall@lbl.gov",
      "contact.label": "Chris Mungall",
      "deprecated": false,
      "description": "An anatomical and developmental ontology for cephalopods",
      "download.obo": "http://purl.obolibrary.org/obo/ceph.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ceph.owl",
      "homepage": "https://github.com/obophenotype/cephalopod-ontology",
      "license": "CC-BY",
      "name": "Cephalopod Ontology",
      "prefix": "ceph"
    },
    "ols": {
      "description": "An anatomical and developmental ontology for cephalopods",
      "download": "http://purl.obolibrary.org/obo/ceph.owl",
      "homepage": "https://github.com/obophenotype/cephalopod-ontology",
      "name": "Cephalopod Ontology",
      "prefix": "ceph",
      "version": "2016-01-12",
      "version.iri": "http://purl.obolibrary.org/obo/ceph/releases/2016-01-12/ceph.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CEPH_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CEPH"
    }
  },
  "cgd": {
    "go": {
      "formatter": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1",
      "homepage": "http://www.candidagenome.org/",
      "name": "Candida Genome Database",
      "prefix": "CGD",
      "synonyms": [
        "CGDID"
      ]
    },
    "mappings": {
      "go": "CGD",
      "miriam": "cgd",
      "n2t": "cgd",
      "ncbi": "CGD",
      "prefixcommons": "CGD",
      "uniprot": "CGD",
      "uniprot.database": "CGD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.",
      "homepage": "http://www.candidagenome.org/",
      "id": "00000145",
      "name": "Candida Genome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CAL\\d{7}$",
      "prefix": "cgd",
      "provider_url": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1",
      "sampleId": "CAL0003079"
    },
    "n2t": {
      "description": "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.",
      "example": "CAL0003079",
      "homepage": "http://www.candidagenome.org/",
      "name": "Candida Genome Database at Stanford University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CAL\\d{7}$",
      "prefix": "cgd",
      "provider_url": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1"
    },
    "ncbi": {
      "example": "CAL0005934",
      "homepage": "http://www.candidagenome.org/",
      "name": "Candida Genome Database",
      "prefix": "CGD"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cgd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CGD"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=%s",
      "identifier": "126",
      "link_is_explicit": "true",
      "name": "Candida Genome Database",
      "prefix": "CGD"
    }
  },
  "cgnc": {
    "example": "10087",
    "homepage": "http://birdgenenames.org/cgnc/",
    "name": "Chicken Gene Nomenclature Consortium",
    "synonyms": [
      "BirdBase",
      "CGNC"
    ],
    "url": "http://birdgenenames.org/cgnc/GeneReport?id=$1"
  },
  "cgsc": {
    "go": {
      "homepage": "http://cgsc.biology.yale.edu/",
      "name": "CGSC",
      "prefix": "CGSC"
    },
    "mappings": {
      "go": "CGSC",
      "miriam": "cgsc",
      "n2t": "cgsc",
      "prefixcommons": "CGSC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature.",
      "homepage": "http://cgsc.biology.yale.edu/index.php",
      "id": "00000295",
      "name": "CGSC Strain",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cgsc",
      "provider_url": "http://cgsc.biology.yale.edu/Site.php?ID=$1",
      "sampleId": "74"
    },
    "n2t": {
      "description": "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature.",
      "example": "74",
      "homepage": "http://cgsc.biology.yale.edu/index.php",
      "name": "CGSC at Yale university",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cgsc",
      "provider_url": "http://cgsc.biology.yale.edu/Site.php?ID=$1"
    },
    "name": "Coli Genetic Stock Center",
    "prefixcommons": {
      "formatter": "http://identifiers.org/cgsc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CGSC"
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  },
  "charprot": {
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      "miriam": "charprot",
      "n2t": "charprot",
      "prefixcommons": "CHARPROT"
    },
    "miriam": {
      "deprecated": false,
      "description": "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.",
      "homepage": "http://www.jcvi.org/charprotdb",
      "id": "00000341",
      "name": "CharProt",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CH_\\d+$",
      "prefix": "charprot",
      "provider_url": "http://www.jcvi.org/charprotdb/index.cgi/view/$1",
      "sampleId": "CH_001923"
    },
    "n2t": {
      "description": "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.",
      "example": "CH_001923",
      "homepage": "http://www.jcvi.org/charprotdb",
      "name": "CharProt at JCVI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CH_\\d+$",
      "prefix": "charprot",
      "provider_url": "http://www.jcvi.org/charprotdb/index.cgi/view/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/charprot/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CHARPROT"
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  },
  "chebi": {
    "bioportal": {
      "name": "Chemical Entities of Biological Interest Ontology",
      "prefix": "CHEBI"
    },
    "cellosaurus": {
      "category": "Chemistry resources",
      "homepage": "https://www.ebi.ac.uk/chebi/",
      "name": "Chemical Entities of Biological Interest",
      "prefix": "ChEBI",
      "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=$1"
    },
    "example": "24867",
    "go": {
      "formatter": "http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1",
      "homepage": "http://www.ebi.ac.uk/chebi/",
      "name": "Chemical Entities of Biological Interest",
      "prefix": "CHEBI",
      "synonyms": [
        "ChEBI"
      ]
    },
    "mappings": {
      "bioportal": "CHEBI",
      "cellosaurus": "ChEBI",
      "go": "CHEBI",
      "miriam": "chebi",
      "n2t": "chebi",
      "obofoundry": "chebi",
      "ols": "chebi",
      "prefixcommons": "CHEBI",
      "wikidata": "P683"
    },
    "miriam": {
      "deprecated": false,
      "description": "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.",
      "homepage": "https://www.ebi.ac.uk/chebi/",
      "id": "00000002",
      "name": "ChEBI",
      "namespaceEmbeddedInLui": true,
      "pattern": "^CHEBI:\\d+$",
      "prefix": "chebi",
      "provider_url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1",
      "sampleId": "36927"
    },
    "n2t": {
      "description": "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.",
      "example": "36927",
      "homepage": "https://www.ebi.ac.uk/chebi/",
      "name": "ChEBI (Chemical Entities of Biological Interest)",
      "namespaceEmbeddedInLui": true,
      "pattern": "^CHEBI:\\d+$",
      "prefix": "chebi",
      "provider_url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1"
    },
    "name": "Chemical Entities of Biological Interest",
    "obofoundry": {
      "contact": "amalik@ebi.ac.uk",
      "contact.label": "Adnan Malik",
      "deprecated": false,
      "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
      "download.obo": "http://purl.obolibrary.org/obo/chebi.obo",
      "download.owl": "http://purl.obolibrary.org/obo/chebi.owl",
      "homepage": "http://www.ebi.ac.uk/chebi",
      "license": "CC-BY 4.0",
      "name": "Chemical Entities of Biological Interest",
      "prefix": "chebi"
    },
    "ols": {
      "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
      "download": "http://purl.obolibrary.org/obo/chebi.owl",
      "homepage": "http://www.ebi.ac.uk/chebi",
      "name": "Chemical Entities of Biological Interest",
      "prefix": "chebi",
      "version.iri": "http://purl.obolibrary.org/obo/chebi/197/chebi.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CHEBI_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CHEBI"
    },
    "synonyms": [
      "ChEBI",
      "CHEBI",
      "CHEBIID"
    ],
    "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1",
    "wikidata": {
      "database": "Q902623",
      "database.homepage": "http://www.ebi.ac.uk/chebi/",
      "database.label": "ChEBI",
      "format": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1",
      "format.rdf": "http://purl.obolibrary.org/obo/CHEBI_$1",
      "homepage": "https://www.ebi.ac.uk/chebi",
      "name": "ChEBI ID",
      "pattern": "\\d+",
      "prefix": "P683"
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  },
  "chembl": {
    "homepage": "https://www.ebi.ac.uk/chembl",
    "mappings": {
      "miriam": "chembl",
      "uniprot": "ChEMBL"
    },
    "miriam": {
      "deprecated": false,
      "description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.",
      "homepage": "https://www.ebi.ac.uk/chembl",
      "id": "00000799",
      "name": "ChEMBL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CHEMBL\\d+$",
      "prefix": "chembl",
      "provider_url": "https://www.ebi.ac.uk/chembl/entity/$1",
      "sampleId": "CHEMBL4303805"
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    "synonyms": [
      "chembl",
      "ChEMBL",
      "ChEMBL_ID"
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    "uniprot": {
      "category": "Chemistry databases",
      "formatter": "https://www.ebi.ac.uk/chembldb/target/inspect/%s",
      "identifier": "174",
      "link_is_explicit": "true",
      "name": "ChEMBL database of bioactive drug-like small molecules",
      "prefix": "ChEMBL"
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  },
  "chembl.compound": {
    "example": "CHEMBL465070",
    "mappings": {
      "miriam": "chembl.compound",
      "n2t": "chembl.compound",
      "prefixcommons": "CHEMBL.COMPOUND",
      "wikidata": "P592"
    },
    "miriam": {
      "deprecated": false,
      "description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.",
      "homepage": "https://www.ebi.ac.uk/chembldb/",
      "id": "00000084",
      "name": "ChEMBL compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CHEMBL\\d+$",
      "prefix": "chembl.compound",
      "provider_url": "https://www.ebi.ac.uk/chembl/compound/inspect/$1",
      "sampleId": "CHEMBL308052"
    },
    "n2t": {
      "description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.",
      "example": "CHEMBL308052",
      "homepage": "https://www.ebi.ac.uk/chembldb/",
      "name": "ChEMBL compound database at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CHEMBL\\d+$",
      "prefix": "chembl.compound",
      "provider_url": "https://www.ebi.ac.uk/chembl/compound/inspect/$1"
    },
    "part_of": "chembl",
    "pattern": "^CHEMBL\\d+$",
    "prefixcommons": {
      "formatter": "http://identifiers.org/chembl.compound/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CHEMBL.COMPOUND"
    },
    "wikidata": {
      "database": "Q6120337",
      "database.homepage": "https://www.ebi.ac.uk/chembl/",
      "database.label": "ChEMBL",
      "format": "https://www.ebi.ac.uk/chembl/compound_report_card/$1/",
      "format.rdf": "http://rdf.ebi.ac.uk/resource/chembl/molecule/$1",
      "homepage": "https://www.ebi.ac.uk/chembl",
      "name": "ChEMBL ID",
      "pattern": "CHEMBL\\d+",
      "prefix": "P592"
    }
  },
  "chembl.target": {
    "mappings": {
      "miriam": "chembl.target",
      "n2t": "chembl.target",
      "prefixcommons": "CHEMBL.TARGET",
      "uniprot.database": "ChEMBL"
    },
    "miriam": {
      "deprecated": false,
      "description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.",
      "homepage": "https://www.ebi.ac.uk/chembldb/",
      "id": "00000085",
      "name": "ChEMBL target",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CHEMBL\\d+$",
      "prefix": "chembl.target",
      "provider_url": "https://www.ebi.ac.uk/chembl/target/inspect/$1",
      "sampleId": "CHEMBL3467"
    },
    "n2t": {
      "description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.",
      "example": "CHEMBL3467",
      "homepage": "https://www.ebi.ac.uk/chembldb/",
      "name": "ChEMBL targets database at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CHEMBL\\d+$",
      "prefix": "chembl.target",
      "provider_url": "https://www.ebi.ac.uk/chembl/target/inspect/$1"
    },
    "part_of": "chembl",
    "prefixcommons": {
      "formatter": "http://identifiers.org/chembl.target/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CHEMBL.TARGET"
    }
  },
  "chemdb": {
    "mappings": {
      "miriam": "chemdb",
      "n2t": "chemdb",
      "prefixcommons": "CHEMDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds.",
      "homepage": "http://cdb.ics.uci.edu/",
      "id": "00000279",
      "name": "ChemDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "chemdb",
      "provider_url": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1",
      "sampleId": "3966782"
    },
    "n2t": {
      "description": "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds.",
      "example": "3966782",
      "homepage": "http://cdb.ics.uci.edu/",
      "name": "ChemDB at UC Irvine",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "chemdb",
      "provider_url": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/chemdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CHEMDB"
    }
  },
  "chemidplus": {
    "mappings": {
      "miriam": "chemidplus",
      "n2t": "chemidplus",
      "prefixcommons": "CHEMIDPLUS"
    },
    "miriam": {
      "deprecated": false,
      "description": "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.",
      "homepage": "https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp",
      "id": "00000096",
      "name": "ChemIDplus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+\\-\\d+\\-\\d+$",
      "prefix": "chemidplus",
      "provider_url": "https://chem.nlm.nih.gov/chemidplus/rn/$1",
      "sampleId": "57-27-2"
    },
    "n2t": {
      "description": "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.",
      "example": "57-27-2",
      "homepage": "https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp",
      "name": "ChemIDplus at National Library of Medicine",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+\\-\\d+\\-\\d+$",
      "prefix": "chemidplus",
      "provider_url": "https://chem.nlm.nih.gov/chemidplus/rn/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/chemidplus/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CHEMIDPLUS"
    },
    "synonyms": [
      "ChemIDplus"
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  },
  "cheminf": {
    "bioportal": {
      "name": "Chemical Information Ontology",
      "prefix": "CHEMINF"
    },
    "download_owl": "https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl",
    "mappings": {
      "bioportal": "CHEMINF",
      "obofoundry": "cheminf",
      "ols": "cheminf",
      "prefixcommons": "CHEMINF"
    },
    "name": "Chemical Information Ontology",
    "not_available_as_obo": true,
    "obofoundry": {
      "contact": "egon.willighagen@gmail.com",
      "contact.label": "Egon Willighagen",
      "deprecated": false,
      "description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.",
      "download.owl": "http://purl.obolibrary.org/obo/cheminf.owl",
      "homepage": "https://github.com/semanticchemistry/semanticchemistry",
      "license": "CC BY 4.0",
      "name": "Chemical Information Ontology",
      "prefix": "cheminf"
    },
    "ols": {
      "description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.",
      "download": "http://purl.obolibrary.org/obo/cheminf.owl",
      "homepage": "https://github.com/semanticchemistry/semanticchemistry",
      "name": "chemical information ontology (cheminf) - information entities about chemical entities",
      "prefix": "cheminf",
      "version": "2.0"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CHEMINF_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CHEMINF"
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  },
  "chemspider": {
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      "miriam": "chemspider",
      "n2t": "chemspider",
      "prefixcommons": "CHEMSPIDER",
      "wikidata": "P661"
    },
    "miriam": {
      "deprecated": false,
      "description": "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources.",
      "homepage": "http://www.chemspider.com/",
      "id": "00000138",
      "name": "ChemSpider",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "chemspider",
      "provider_url": "http://www.chemspider.com/Chemical-Structure.$1.html",
      "sampleId": "56586"
    },
    "n2t": {
      "description": "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources.",
      "example": "56586",
      "homepage": "http://www.chemspider.com/",
      "name": "ChemSpider at RSC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "chemspider",
      "provider_url": "http://www.chemspider.com/Chemical-Structure.$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/chemspider/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CHEMSPIDER"
    },
    "synonyms": [
      "Chemspider"
    ],
    "wikidata": {
      "database": "Q2311683",
      "database.homepage": "https://www.chemspider.com/",
      "database.label": "ChemSpider",
      "format": "https://www.chemspider.com/Chemical-Structure.$1.html",
      "format.rdf": "http://rdf.chemspider.com/$1",
      "homepage": "https://www.chemspider.com/",
      "name": "ChemSpider ID",
      "pattern": "[1-9]\\d*",
      "prefix": "P661"
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  },
  "chickenqtldb": {
    "mappings": {
      "miriam": "chickenqtldb",
      "n2t": "chickenqtldb",
      "prefixcommons": "CHICKENQTLDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.",
      "homepage": "https://www.animalgenome.org/QTLdb",
      "id": "00000505",
      "name": "Animal Genome Chicken QTL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "chickenqtldb",
      "provider_url": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1",
      "sampleId": "14362"
    },
    "n2t": {
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.",
      "example": "14362",
      "homepage": "http://www.animalgenome.org/cgi-bin/QTLdb/GG/index",
      "name": "Animal QTL Chicken at Iowa State University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "chickenqtldb",
      "provider_url": "http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/chickenqtldb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CHICKENQTLDB"
    }
  },
  "chiro": {
    "bioportal": {
      "name": "CHEBI Integrated Role Ontology",
      "prefix": "CHIRO"
    },
    "mappings": {
      "bioportal": "CHIRO",
      "obofoundry": "chiro",
      "ols": "chiro"
    },
    "name": "ChEBI Integrated Role Ontology",
    "no_own_terms": true,
    "obofoundry": {
      "contact": "vasilevs@ohsu.edu",
      "contact.label": "Nicole Vasilevsky",
      "deprecated": false,
      "description": "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.",
      "download.obo": "http://purl.obolibrary.org/obo/chiro.obo",
      "download.owl": "http://purl.obolibrary.org/obo/chiro.owl",
      "homepage": "https://github.com/obophenotype/chiro",
      "license": "CC-0",
      "name": "CHEBI Integrated Role Ontology",
      "prefix": "chiro"
    },
    "ols": {
      "description": "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.",
      "download": "http://purl.obolibrary.org/obo/chiro.owl",
      "homepage": "https://github.com/obophenotype/chiro",
      "name": "CHEBI Integrated Role Ontology",
      "prefix": "chiro",
      "version": "2015-11-23",
      "version.iri": "http://purl.obolibrary.org/obo/chiro/releases/2015-11-23/chiro.owl"
    }
  },
  "chmo": {
    "bioportal": {
      "name": "Chemical Methods Ontology",
      "prefix": "CHMO"
    },
    "example": "0002902",
    "mappings": {
      "bioportal": "CHMO",
      "obofoundry": "chmo",
      "ols": "chmo",
      "prefixcommons": "CHMO"
    },
    "obofoundry": {
      "contact": "batchelorc@rsc.org",
      "contact.label": "Colin Batchelor",
      "deprecated": false,
      "description": "CHMO, the chemical methods ontology, describes methods used to",
      "download.owl": "http://purl.obolibrary.org/obo/chmo.owl",
      "homepage": "https://github.com/rsc-ontologies/rsc-cmo",
      "license": "CC-BY",
      "name": "Chemical Methods Ontology",
      "prefix": "chmo"
    },
    "ols": {
      "contact": "chemistry-ontologies@googlegroups.com",
      "description": "CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI).",
      "download": "http://purl.obolibrary.org/obo/chmo.owl",
      "homepage": "https://github.com/rsc-ontologies/rsc-cmo",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Chemical Methods Ontology",
      "prefix": "chmo",
      "version": "2019-11-14",
      "version.iri": "http://purl.obolibrary.org/obo/chmo/releases/2014-11-20/chmo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CHMO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CHMO"
    }
  },
  "cido": {
    "bioportal": {
      "name": "Coronavirus Infectious Disease Ontology",
      "prefix": "CIDO"
    },
    "mappings": {
      "bioportal": "CIDO",
      "obofoundry": "cido",
      "ols": "cido"
    },
    "obofoundry": {
      "contact": "yongqunh@med.umich.edu",
      "contact.label": "Yongqun Oliver He",
      "deprecated": false,
      "description": "The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment.",
      "download.owl": "http://purl.obolibrary.org/obo/cido.owl",
      "homepage": "https://github.com/cido-ontology/cido",
      "license": "CC-BY",
      "name": "Coronavirus Infectious Disease Ontology",
      "prefix": "cido"
    },
    "ols": {
      "contact": "cido-discuss@googlegroups.com",
      "description": "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment.",
      "download": "http://purl.obolibrary.org/obo/cido.owl",
      "homepage": "https://github.com/cido-ontology/cido",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "CIDO: Ontology of Coronavirus Infectious Disease",
      "prefix": "cido",
      "version": "1.0.235"
    }
  },
  "cio": {
    "bioportal": {
      "name": "Confidence Information Ontology",
      "prefix": "CIO"
    },
    "example": "0000040",
    "mappings": {
      "bioportal": "CIO",
      "obofoundry": "cio",
      "ols": "cio",
      "prefixcommons": "CIO"
    },
    "obofoundry": {
      "contact": "bgee@sib.swiss",
      "contact.label": "Frederic Bastian",
      "deprecated": false,
      "description": "An ontology to capture confidence information about annotations.",
      "download.obo": "http://purl.obolibrary.org/obo/cio.obo",
      "download.owl": "http://purl.obolibrary.org/obo/cio.owl",
      "homepage": "https://github.com/BgeeDB/confidence-information-ontology",
      "license": "CC0",
      "name": "Confidence Information Ontology",
      "prefix": "cio"
    },
    "ols": {
      "description": "An ontology to capture confidence information about annotations.",
      "download": "http://purl.obolibrary.org/obo/cio.owl",
      "homepage": "https://github.com/BgeeDB/confidence-information-ontology",
      "name": "Confidence Information Ontology",
      "prefix": "cio",
      "version": "2015-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/cio/releases/2015-03-10/cio.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CIO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CIO"
    }
  },
  "citexplore": {
    "bioportal": {
      "name": "Cerebrotendinous Xanthomatosis Ontology",
      "prefix": "CTX"
    },
    "example": "C6155",
    "mappings": {
      "bioportal": "CTX"
    },
    "name": "CiteXplore",
    "synonyms": [
      "CTX"
    ],
    "url": "https://europepmc.org/article/CTX/$1"
  },
  "cl": {
    "bioportal": {
      "name": "Cell Ontology",
      "prefix": "CL"
    },
    "download_obo": "https://raw.githubusercontent.com/obophenotype/cell-ontology/master/cl-full.obo",
    "example": "0000062",
    "go": {
      "homepage": "http://cellontology.org",
      "name": "Cell Type Ontology",
      "prefix": "CL"
    },
    "mappings": {
      "bioportal": "CL",
      "go": "CL",
      "miriam": "cl",
      "n2t": "cl",
      "obofoundry": "cl",
      "ols": "cl",
      "prefixcommons": "CL"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi.",
      "homepage": "http://bioportal.bioontology.org/ontologies/CL",
      "id": "00000110",
      "name": "Cell Type Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^CL:\\d{7}$",
      "prefix": "cl",
      "provider_url": "http://purl.bioontology.org/ontology/CL/CL:$1",
      "sampleId": "0000232"
    },
    "n2t": {
      "description": "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi.",
      "example": "0000232",
      "homepage": "http://bioportal.bioontology.org/ontologies/CL",
      "name": "Cell Type Ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^CL:\\d{7}$",
      "prefix": "cl",
      "provider_url": "http://purl.bioontology.org/ontology/CL/CL:$1"
    },
    "obofoundry": {
      "contact": "addiehl@buffalo.edu",
      "contact.label": "Alexander Diehl",
      "deprecated": false,
      "description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.",
      "download.obo": "http://purl.obolibrary.org/obo/cl.obo",
      "download.owl": "http://purl.obolibrary.org/obo/cl.owl",
      "homepage": "https://obophenotype.github.io/cell-ontology/",
      "license": "CC-BY",
      "name": "Cell Ontology",
      "prefix": "cl"
    },
    "ols": {
      "description": "An ontology of cell types.",
      "download": "http://purl.obolibrary.org/obo/cl.owl",
      "homepage": "https://obophenotype.github.io/cell-ontology/",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Cell Ontology",
      "prefix": "cl",
      "version": "2021-06-29",
      "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2021-06-29/cl.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CL_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CL"
    },
    "wikidata": {
      "database": "Q55118285",
      "database.label": "Cell Ontology",
      "format": "http://purl.obolibrary.org/obo/$1",
      "homepage": "http://www.ontobee.org/ontology/CL",
      "name": "Cell Ontology ID",
      "pattern": "CL_[0-9]{7}",
      "prefix": "P7963"
    }
  },
  "clao": {
    "bioportal": {
      "name": "Collembola Anatomy Ontology",
      "prefix": "CLAO"
    },
    "mappings": {
      "bioportal": "CLAO",
      "obofoundry": "clao",
      "ols": "clao"
    },
    "obofoundry": {
      "contact": "lagonzalezmo@unal.edu.co",
      "contact.label": "Luis González-Montaña",
      "deprecated": false,
      "description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).",
      "download.obo": "http://purl.obolibrary.org/obo/clao.obo",
      "download.owl": "http://purl.obolibrary.org/obo/clao.owl",
      "homepage": "https://github.com/luis-gonzalez-m/Collembola",
      "license": "CC-0",
      "name": "Collembola Anatomy Ontology",
      "prefix": "clao"
    },
    "ols": {
      "description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).",
      "download": "http://purl.obolibrary.org/obo/clao.owl",
      "homepage": "https://github.com/luis-gonzalez-m/Collembola",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Collembola Anatomy Ontology",
      "prefix": "clao",
      "version": "2021-05-31",
      "version.iri": "http://purl.obolibrary.org/obo/clao/releases/2021-05-31/clao.owl"
    }
  },
  "classyfire": {
    "mappings": {
      "miriam": "classyfire"
    },
    "miriam": {
      "deprecated": false,
      "description": "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API.",
      "homepage": "http://classyfire.wishartlab.com/",
      "id": "00000770",
      "name": "ClassyFire",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C[0-9]{7}$",
      "prefix": "classyfire",
      "provider_url": "http://classyfire.wishartlab.com/tax_nodes/$1",
      "sampleId": "C0004828"
    }
  },
  "cldb": {
    "cellosaurus": {
      "category": "Cell line databases/resources",
      "homepage": "http://bioinformatics.hsanmartino.it/cldb/",
      "name": "Cell Line Data Base",
      "prefix": "CLDB",
      "url": "http://bioinformatics.hsanmartino.it/cldb/$1.html"
    },
    "mappings": {
      "cellosaurus": "CLDB",
      "miriam": "cldb",
      "n2t": "cldb",
      "prefixcommons": "CLDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through  distributors, allowing cell line requests to be made from collections and laboratories.",
      "homepage": "http://bioinformatics.hsanmartino.it/hypercldb/indexes.html",
      "id": "00000390",
      "name": "CLDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(cl|tum)\\d+$",
      "prefix": "cldb",
      "provider_url": "http://bioinformatics.hsanmartino.it/hypercldb/$1.html",
      "sampleId": "cl3603"
    },
    "n2t": {
      "description": "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through  distributors, allowing cell line requests to be made from collections and laboratories.",
      "example": "cl3603",
      "homepage": "http://bioinformatics.hsanmartino.it/hypercldb/indexes.html",
      "name": "CLDB at Genova",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(cl|tum)\\d+$",
      "prefix": "cldb",
      "provider_url": "http://bioinformatics.hsanmartino.it/hypercldb/$1.html"
    },
    "name": "Cell Line Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/cldb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CLDB"
    }
  },
  "clingene": {
    "biolink": {
      "formatter": "http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "CAID"
    },
    "example": "CA981206459",
    "homepage": "https://reg.clinicalgenome.org",
    "mappings": {
      "biolink": "CAID"
    },
    "name": "ClinGen Allele Registry",
    "url": "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1"
  },
  "clinicaltrials": {
    "mappings": {
      "miriam": "clinicaltrials",
      "n2t": "clinicaltrials",
      "prefixcommons": "CLINICALTRIALS"
    },
    "miriam": {
      "deprecated": false,
      "description": "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries",
      "homepage": "https://clinicaltrials.gov/",
      "id": "00000137",
      "name": "ClinicalTrials.gov",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NCT\\d{8}$",
      "prefix": "clinicaltrials",
      "provider_url": "https://clinicaltrials.gov/ct2/show/$1",
      "sampleId": "NCT00222573"
    },
    "n2t": {
      "description": "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries",
      "example": "NCT00222573",
      "homepage": "https://clinicaltrials.gov/",
      "name": "ClinicalTrials.gov at NIH",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NCT\\d{8}$",
      "prefix": "clinicaltrials",
      "provider_url": "https://clinicaltrials.gov/ct2/show/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/clinicaltrials/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CLINICALTRIALS"
    }
  },
  "clinvar": {
    "cellosaurus": {
      "category": "Polymorphism and mutation databases",
      "homepage": "https://www.ncbi.nlm.nih.gov/clinvar/",
      "name": "ClinVar",
      "prefix": "ClinVar",
      "url": "https://www.ncbi.nlm.nih.gov/clinvar/variation/$1"
    },
    "mappings": {
      "cellosaurus": "ClinVar",
      "miriam": "clinvar",
      "n2t": "clinvar",
      "prefixcommons": "ClinVar"
    },
    "miriam": {
      "deprecated": false,
      "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.",
      "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
      "id": "00000596",
      "name": "ClinVar Variant",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "clinvar",
      "provider_url": "https://www.ncbi.nlm.nih.gov/clinvar/variation/$1",
      "sampleId": "12345"
    },
    "n2t": {
      "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.",
      "example": "12345",
      "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
      "name": "ClinVar Variant at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "clinvar",
      "provider_url": "https://www.ncbi.nlm.nih.gov/clinvar/variation/$1"
    },
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/clinvar/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "ClinVar"
    }
  },
  "clinvar.record": {
    "mappings": {
      "miriam": "clinvar.record",
      "n2t": "clinvar.record",
      "prefixcommons": "CLINVAR.RECORD"
    },
    "miriam": {
      "deprecated": false,
      "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of  the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.",
      "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
      "id": "00000534",
      "name": "ClinVar Record",
      "namespaceEmbeddedInLui": false,
      "pattern": "^RCV\\d+(\\.\\d+)?$",
      "prefix": "clinvar.record",
      "provider_url": "http://www.ncbi.nlm.nih.gov/clinvar/$1/",
      "sampleId": "RCV000033555.3"
    },
    "n2t": {
      "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of  the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.",
      "example": "RCV000033555.3",
      "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
      "name": "ClinVar Record at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^RCV\\d+(\\.\\d+)?$",
      "prefix": "clinvar.record",
      "provider_url": "http://www.ncbi.nlm.nih.gov/clinvar/$1/"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/clinvar.record/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CLINVAR.RECORD"
    }
  },
  "clinvar.submission": {
    "mappings": {
      "miriam": "clinvar.submission",
      "n2t": "clinvar.submission",
      "prefixcommons": "CLINVAR.SUBMISSION"
    },
    "miriam": {
      "deprecated": false,
      "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.",
      "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
      "id": "00000595",
      "name": "ClinVar Submission",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SCV\\d+(\\.\\d+)?$",
      "prefix": "clinvar.submission",
      "provider_url": "http://www.ncbi.nlm.nih.gov/clinvar?term=$1",
      "sampleId": "SCV000151292"
    },
    "n2t": {
      "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.",
      "example": "SCV000151292",
      "homepage": "http://www.ncbi.nlm.nih.gov/clinvar/",
      "name": "ClinVar Submission at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SCV\\d+(\\.\\d+)?$",
      "prefix": "clinvar.submission",
      "provider_url": "http://www.ncbi.nlm.nih.gov/clinvar?term=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/clinvar.submission/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CLINVAR.SUBMISSION"
    }
  },
  "clinvar.submitter": {
    "mappings": {
      "miriam": "clinvar.submitter"
    },
    "miriam": {
      "deprecated": false,
      "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs).",
      "homepage": "https://www.ncbi.nlm.nih.gov/clinvar/",
      "id": "00000769",
      "name": "ClinVar Submitter",
      "namespaceEmbeddedInLui": false,
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      "name": "Cell Line Ontology",
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      "license": "CC-BY",
      "name": "Cell Line Ontology",
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      "contact.label": "Lucas Leclere",
      "deprecated": false,
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      "download.owl": "http://purl.obolibrary.org/obo/clyh.owl",
      "homepage": "https://github.com/EBISPOT/clyh_ontology",
      "license": "CC-BY",
      "name": "Clytia hemisphaerica Development and Anatomy Ontology",
      "prefix": "clyh"
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      "name": "Clytia hemisphaerica Development and Anatomy Ontology (CLYH)",
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      "contact.label": "Mark Engelstad",
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      "homepage": "https://code.google.com/p/craniomaxillofacial-ontology/",
      "name": "CranioMaxilloFacial ontology",
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      "prefix": "CMO"
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      "contact.label": "Mary Shimoyama",
      "deprecated": false,
      "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
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      "download.owl": "http://purl.obolibrary.org/obo/cmo.owl",
      "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
      "license": "CC-0",
      "name": "Clinical measurement ontology",
      "prefix": "cmo"
    },
    "ols": {
      "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
      "download": "http://purl.obolibrary.org/obo/cmo.owl",
      "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
      "name": "Clinical measurement ontology",
      "prefix": "cmo",
      "version": "2019-02-19",
      "version.iri": "http://purl.obolibrary.org/obo/cmo/releases/2019-02-19/cmo.owl"
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      "prefix": "CMO"
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    "bioportal": {
      "name": "Cellular microscopy phenotype ontology",
      "prefix": "CMPO"
    },
    "mappings": {
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      "description": "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations.",
      "download": "http://www.ebi.ac.uk/cmpo/cmpo.owl",
      "homepage": "http://www.ebi.ac.uk/cmpo",
      "name": "Cellular Microscopy Phenotype Ontology",
      "prefix": "cmpo",
      "version": "2017-12-19",
      "version.iri": "http://www.ebi.ac.uk/cmpo/releases/2017-12-19/cmpo.owl"
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      "description": "Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables",
      "download": "http://www.cropontology.org/ontology/CO_320/Rice/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_320/Rice",
      "name": "Rice ontology",
      "prefix": "co_320",
      "version": "2019-10-09"
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      "description": "Sept 2020",
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      "homepage": "http://www.cropontology.org/ontology/CO_321/Wheat",
      "name": "Wheat ontology",
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      "description": "T3 Wheat traits",
      "download": "http://www.cropontology.org/ontology/CO_321:ROOT/Wheat/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_321:ROOT/Wheat",
      "name": "Wheat ontology",
      "prefix": "co_321:root"
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      "description": "Maize Trait Dictionary in template 5 - CIMMYT- September 2016",
      "download": "http://www.cropontology.org/ontology/CO_322/Maize/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_322/Maize",
      "name": "Maize ontology",
      "prefix": "co_322",
      "version": "2019-10-09"
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  },
  "co_323": {
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "ICARDA - TDv5 - Sept 2018",
      "download": "http://www.cropontology.org/ontology/CO_323/Barley/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_323/Barley",
      "name": "Barley ontology",
      "prefix": "co_323",
      "version": "2019-11-20"
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  },
  "co_324": {
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      "description": "Sorghum TDv5 March 2021",
      "download": "http://www.cropontology.org/ontology/CO_324/Sorghum/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_324/Sorghum",
      "name": "Sorghum ontology",
      "prefix": "co_324",
      "version": "2019-10-09"
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      "description": "Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019",
      "download": "http://www.cropontology.org/ontology/CO_325/Banana/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_325/Banana",
      "name": "Banana ontology",
      "prefix": "co_325",
      "version": "2019-10-09"
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      "description": "Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016",
      "download": "http://www.cropontology.org/ontology/CO_327/Pearl%20millet/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_327/Pearl%20millet",
      "name": "Pearl millet ontology",
      "prefix": "co_327",
      "version": "2019-10-09"
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  "co_330": {
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "CIP - potato ontology - november 2020",
      "download": "http://www.cropontology.org/ontology/CO_330/Potato/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_330/Potato",
      "name": "Potato ontology",
      "prefix": "co_330",
      "version": "2019-10-09"
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "Sweet Potato Trait Dictionary in template v5 - CIP - November 2019",
      "download": "http://www.cropontology.org/ontology/CO_331/Sweet%20Potato/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_331/Sweet%20Potato",
      "name": "Sweet Potato ontology",
      "prefix": "co_331",
      "version": "2019-10-09"
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    },
    "ols": {
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      "description": "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017.",
      "download": "http://www.cropontology.org/ontology/CO_333/Beet%20Ontology/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_333/Beet%20Ontology",
      "name": "Beet Ontology ontology",
      "prefix": "co_333",
      "version": "2019-01-23"
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  "co_334": {
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      "description": "Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016",
      "download": "http://www.cropontology.org/ontology/CO_334/Cassava/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_334/Cassava",
      "name": "Cassava ontology",
      "prefix": "co_334",
      "version": "2019-10-09"
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      "description": "CIAT Common bean trait dictionary - version August 2014",
      "download": "http://www.cropontology.org/ontology/CO_335/Common%20Bean/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_335/Common%20Bean",
      "name": "Common Bean ontology",
      "prefix": "co_335",
      "version": "2019-10-09"
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      "description": "Soybean Trait Dictionary in template v5 - IITA - July 2015",
      "download": "http://www.cropontology.org/ontology/CO_336/Soybean/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_336/Soybean",
      "name": "Soybean ontology",
      "prefix": "co_336"
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      "description": "Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS/USDA-ARS - Sept 2019",
      "download": "http://www.cropontology.org/ontology/CO_337/Groundnut/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_337/Groundnut",
      "name": "Groundnut ontology",
      "prefix": "co_337",
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      "description": "Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015",
      "download": "http://www.cropontology.org/ontology/CO_338/Chickpea/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_338/Chickpea",
      "name": "Chickpea ontology",
      "prefix": "co_338",
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      "description": "Lentil Trait Dictionary in template v5 - ICARDA - July 2015",
      "download": "http://www.cropontology.org/ontology/CO_339/Lentil/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_339/Lentil",
      "name": "Lentil ontology",
      "prefix": "co_339",
      "version": "2019-10-09"
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  "co_340": {
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    "ols": {
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      "description": "Cowpea Trait Dictionary in template v5 - IITA - August 2015",
      "download": "http://www.cropontology.org/ontology/CO_340/Cowpea/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_340/Cowpea",
      "name": "Cowpea ontology",
      "prefix": "co_340",
      "version": "2019-10-09"
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  "co_341": {
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    "ols": {
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      "description": "Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015",
      "download": "http://www.cropontology.org/ontology/CO_341/Pigeonpea/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_341/Pigeonpea",
      "name": "Pigeonpea ontology",
      "prefix": "co_341",
      "version": "2019-11-18"
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  "co_343": {
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "version 2019 - pvs",
      "download": "http://www.cropontology.org/ontology/CO_343/Yam/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_343/Yam",
      "name": "Yam ontology",
      "prefix": "co_343",
      "version": "2019-10-09"
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  },
  "co_345": {
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "Brachiaria (forages) ontology TD v5 - Version Oct 2016",
      "download": "http://www.cropontology.org/ontology/CO_345/Brachiaria/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_345/Brachiaria",
      "name": "Brachiaria ontology",
      "prefix": "co_345",
      "version": "2019-10-09"
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  "co_346": {
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "oct 2016",
      "download": "http://www.cropontology.org/ontology/CO_346/Mungbean/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_346/Mungbean",
      "name": "Mungbean ontology",
      "prefix": "co_346",
      "version": "2019-10-09"
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  "co_347": {
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "March 2017 version ",
      "download": "http://www.cropontology.org/ontology/CO_347/Castor%20bean/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_347/Castor%20bean",
      "name": "Castor bean ontology",
      "prefix": "co_347",
      "version": "2019-10-09"
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  },
  "co_348": {
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    },
    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France).",
      "download": "http://www.cropontology.org/ontology/CO_348/Brassica/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_348/Brassica",
      "name": "Brassica ontology",
      "prefix": "co_348",
      "version": "2019-11-29"
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo",
      "download": "http://www.cropontology.org/ontology/CO_350/Oat/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_350/Oat",
      "name": "Oat ontology",
      "prefix": "co_350",
      "version": "2019-10-09"
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  "co_356": {
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "Grape Ontology including OIV and bioversity descriptors. INRAE Jan 2021",
      "download": "http://www.cropontology.org/ontology/CO_356/Vitis/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_356/Vitis",
      "name": "Vitis ontology",
      "prefix": "co_356",
      "version": "2019-11-29"
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE.",
      "download": "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology",
      "name": "Woody Plant Ontology ontology",
      "prefix": "co_357",
      "version": "2019-11-18"
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  "co_358": {
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    },
    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "Cotton ontology from CottonGen database - June 2019",
      "download": "http://www.cropontology.org/ontology/CO_358/Cotton/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_358/Cotton",
      "name": "Cotton ontology",
      "prefix": "co_358",
      "version": "2020-01-03"
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "December 2019",
      "download": "http://www.cropontology.org/ontology/CO_359/Sunflower/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_359/Sunflower",
      "name": "Sunflower ontology",
      "prefix": "co_359"
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    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "Sugar Kelp trait ontology",
      "download": "http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait",
      "name": "Sugar Kelp trait ontology",
      "prefix": "co_360",
      "version": "2019-06-26"
    }
  },
  "co_365": {
    "mappings": {
      "ols": "co_365"
    },
    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "developed by ICARDA - Dec 2018",
      "download": "http://www.cropontology.org/ontology/CO_365/Fababean/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_365/Fababean",
      "name": "Fababean ontology",
      "prefix": "co_365",
      "version": "2019-10-15"
    }
  },
  "co_366": {
    "mappings": {
      "ols": "co_366"
    },
    "ols": {
      "contact": "helpdesk@cropontology-curationtool.org",
      "description": "version Dec 2019",
      "download": "http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut/owl",
      "homepage": "http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut",
      "name": "Bambara groundnut ontology",
      "prefix": "co_366",
      "version": "2019-12-23"
    }
  },
  "cob": {
    "bioportal": {
      "name": "Core Ontology for Biology and Biomedicine",
      "prefix": "COB"
    },
    "mappings": {
      "bioportal": "COB",
      "obofoundry": "cob",
      "ols": "cob"
    },
    "obofoundry": {
      "contact": "bpeters@lji.org",
      "contact.label": "Bjoern Peters",
      "deprecated": false,
      "description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.",
      "download.owl": "http://purl.obolibrary.org/obo/cob.owl",
      "homepage": "https://github.com/OBOFoundry/COB",
      "license": "CC0",
      "name": "Core Ontology for Biology and Biomedicine",
      "prefix": "cob"
    },
    "ols": {
      "description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.",
      "download": "http://purl.obolibrary.org/obo/cob.owl",
      "homepage": "https://github.com/OBOFoundry/COB",
      "license": "https://creativecommons.org/publicdomain/zero/1.0/",
      "name": "Core Ontology for Biology and Biomedicine",
      "prefix": "cob",
      "version": "2021-02-21",
      "version.iri": "http://purl.obolibrary.org/obo/cob/2020-04-15/cob.owl"
    }
  },
  "cog": {
    "contact": "cogs@ncbi.nlm.nih.gov",
    "description": "COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems.",
    "example": "COG0001",
    "go": {
      "formatter": "http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=$1",
      "homepage": "http://www.ncbi.nlm.nih.gov/COG/",
      "name": "NCBI COG cluster",
      "prefix": "COG_Cluster"
    },
    "homepage": "https://www.ncbi.nlm.nih.gov/research/cog/",
    "mappings": {
      "go": "COG_Cluster"
    },
    "name": "Cluster of orthologous genes",
    "pattern": "^COG\\d+$",
    "synonyms": [
      "COG_Cluster"
    ],
    "url": "https://www.ncbi.nlm.nih.gov/research/cog/cog/$1"
  },
  "cog.category": {
    "contact": "cogs@ncbi.nlm.nih.gov",
    "description": "Higher-level classifications of COG Pathways",
    "example": "K",
    "name": "COG Categories",
    "part_of": "cog",
    "url": "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1"
  },
  "cog.pathway": {
    "contact": "cogs@ncbi.nlm.nih.gov",
    "example": "NAD%20biosynthesis",
    "go": {
      "formatter": "http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=$1",
      "homepage": "http://www.ncbi.nlm.nih.gov/COG/",
      "name": "NCBI COG pathway",
      "prefix": "COG_Pathway"
    },
    "homepage": "https://www.ncbi.nlm.nih.gov/research/cog/pathways",
    "mappings": {
      "go": "COG_Pathway"
    },
    "name": "COG Pathways",
    "part_of": "cog",
    "url": "https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1"
  },
  "cohd": {
    "comment": "not really sure where the source is. this also links to a system called athena. I was not able to figure out what COHD stands for.",
    "homepage": "https://github.com/MIT-LCP/mimic-omop",
    "name": "MIMIC III Database"
  },
  "combine.specifications": {
    "mappings": {
      "miriam": "combine.specifications",
      "n2t": "combine.specifications",
      "prefixcommons": "COMBINE.SPECIFICATIONS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.",
      "homepage": "https://co.mbine.org/standards/",
      "id": "00000258",
      "name": "COMBINE specifications",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\-|\\.|\\w)*$",
      "prefix": "combine.specifications",
      "provider_url": "https://co.mbine.org/specifications/$1",
      "sampleId": "sbgn.er.level-1.version-1.2"
    },
    "n2t": {
      "description": "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.",
      "example": "sbgn.er.level-1.version-1.2",
      "homepage": "https://co.mbine.org/standards/",
      "name": "COMBINE at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\-|\\.|\\w)*$",
      "prefix": "combine.specifications",
      "provider_url": "https://co.mbine.org/specifications/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/combine.specifications/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "COMBINE.SPECIFICATIONS"
    }
  },
  "come": {
    "description": "COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif.",
    "example": "MOL000160",
    "homepage": "https://www.flymine.org/come",
    "name": "The Bioinorganic Motif Database",
    "url": "https://www.flymine.org/come/entry?gn=$1"
  },
  "complexportal": {
    "example": "CPX-263",
    "go": {
      "formatter": "https://www.ebi.ac.uk/complexportal/complex/$1",
      "homepage": "https://www.ebi.ac.uk/complexportal",
      "name": "Complex Portal database of macromolecular complexes",
      "prefix": "ComplexPortal"
    },
    "mappings": {
      "go": "ComplexPortal",
      "miriam": "complexportal",
      "n2t": "complexportal",
      "prefixcommons": "COMPLEXPORTAL",
      "uniprot": "ComplexPortal",
      "uniprot.database": "ComplexPortal",
      "wikidata": "P7718"
    },
    "miriam": {
      "deprecated": false,
      "description": "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases.",
      "homepage": "https://www.ebi.ac.uk/complexportal",
      "id": "00000657",
      "name": "Complex Portal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CPX-[0-9]+$",
      "prefix": "complexportal",
      "provider_url": "https://www.ebi.ac.uk/complexportal/complex/$1",
      "sampleId": "CPX-2158"
    },
    "n2t": {
      "description": "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases.",
      "example": "CPX-2158",
      "homepage": "https://www.ebi.ac.uk/complexportal",
      "name": "Complex Portal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CPX-[0-9]+$",
      "prefix": "complexportal",
      "provider_url": "https://www.ebi.ac.uk/complexportal/complex/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/complexportal/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "COMPLEXPORTAL"
    },
    "synonyms": [
      "ComplexPortal"
    ],
    "uniprot": {
      "category": "Protein-protein interaction databases",
      "formatter": "https://www.ebi.ac.uk/complexportal/complex/%s",
      "identifier": "228",
      "link_is_explicit": "true",
      "name": "ComplexPortal: manually curated resource of macromolecular complexes",
      "prefix": "ComplexPortal"
    },
    "wikidata": {
      "database": "Q47196990",
      "database.homepage": "https://www.ebi.ac.uk/complexportal/home",
      "database.label": "Complex Portal",
      "format": "https://www.ebi.ac.uk/complexportal/complex/$1",
      "homepage": "https://www.ebi.ac.uk/complexportal/home",
      "name": "Complex Portal accession ID",
      "pattern": "^CPX-[0-9]+$",
      "prefix": "P7718"
    }
  },
  "comptox": {
    "mappings": {
      "miriam": "comptox",
      "n2t": "comptox",
      "prefixcommons": "COMPTOX"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks.",
      "homepage": "https://comptox.epa.gov/dashboard",
      "id": "00000658",
      "name": "CompTox Chemistry Dashboard",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DTXSID\\d+$",
      "prefix": "comptox",
      "provider_url": "https://comptox.epa.gov/dashboard/$1",
      "sampleId": "DTXSID2021028"
    },
    "n2t": {
      "description": "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks.",
      "example": "DTXSID2021028",
      "homepage": "https://comptox.epa.gov/dashboard",
      "name": "CompTox Chemistry Dashboard",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DTXSID\\d+$",
      "prefix": "comptox",
      "provider_url": "https://comptox.epa.gov/dashboard/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/comptox/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "COMPTOX"
    }
  },
  "compulyeast": {
    "mappings": {
      "miriam": "compulyeast",
      "n2t": "compulyeast",
      "prefixcommons": "COMPULYEAST"
    },
    "miriam": {
      "deprecated": false,
      "description": "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record.",
      "homepage": "http://compluyeast2dpage.dacya.ucm.es/",
      "id": "00000198",
      "name": "Compulyeast",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
      "prefix": "compulyeast",
      "provider_url": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1",
      "sampleId": "O08709"
    },
    "n2t": {
      "description": "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record.",
      "example": "O08709",
      "homepage": "http://compluyeast2dpage.dacya.ucm.es/",
      "name": "Compluyeast database at Universidad Complutense Madrid",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
      "prefix": "compulyeast",
      "provider_url": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1"
    },
    "name": "Compluyeast-2D-DB",
    "prefixcommons": {
      "formatter": "http://identifiers.org/compulyeast/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "COMPULYEAST"
    }
  },
  "conoserver": {
    "mappings": {
      "miriam": "conoserver",
      "n2t": "conoserver",
      "prefixcommons": "CONOSERVER",
      "uniprot": "ConoServer",
      "uniprot.database": "ConoServer"
    },
    "miriam": {
      "deprecated": false,
      "description": "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails.",
      "homepage": "http://www.conoserver.org/",
      "id": "00000254",
      "name": "Conoserver",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "conoserver",
      "provider_url": "http://www.conoserver.org/?page=card&table=protein&id=$1",
      "sampleId": "2639"
    },
    "n2t": {
      "description": "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails.",
      "example": "2639",
      "homepage": "http://www.conoserver.org/",
      "name": "ConoServer at University of Queensland",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "conoserver",
      "provider_url": "http://www.conoserver.org/?page=card&table=protein&id=$1"
    },
    "name": "ConoServer",
    "prefixcommons": {
      "formatter": "http://identifiers.org/conoserver/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CONOSERVER"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "http://www.conoserver.org/?page=card&table=protein&id=%s",
      "identifier": "156",
      "link_is_explicit": "true",
      "name": "ConoServer: Cone snail toxin database",
      "prefix": "ConoServer"
    }
  },
  "conso": {
    "description": "An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases.",
    "example": "CONSO00010",
    "homepage": "https://pharmacome.github.io/conso/",
    "name": "Curation of Neurodegeneration Supporting Ontology",
    "pattern": "^CONSO\\d{5}$",
    "url": "https://pharmacome.github.io/conso/$1"
  },
  "coriell": {
    "cellosaurus": {
      "category": "Cell line collections",
      "homepage": "https://catalog.coriell.org",
      "name": "Coriell Institute Biorepositories",
      "prefix": "Coriell",
      "url": "https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=$1&Product=CC"
    },
    "go": {
      "description": "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.",
      "formatter": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1",
      "homepage": "http://ccr.coriell.org/",
      "name": "Coriell Institute for Medical Research",
      "prefix": "CORIELL"
    },
    "mappings": {
      "cellosaurus": "Coriell",
      "go": "CORIELL",
      "miriam": "coriell",
      "n2t": "coriell",
      "prefixcommons": "Coriell"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.",
      "homepage": "http://ccr.coriell.org/",
      "id": "00000439",
      "name": "Coriell Cell Repositories",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{2}\\d+$",
      "prefix": "coriell",
      "provider_url": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1",
      "sampleId": "GM17027"
    },
    "n2t": {
      "description": "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.",
      "example": "GM17027",
      "homepage": "http://ccr.coriell.org/",
      "name": "Coriell Cell Repositories at Coriell Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{2}\\d+$",
      "prefix": "coriell",
      "provider_url": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1"
    },
    "prefixcommons": {
      "formatter": "https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "Coriell"
    }
  },
  "corum": {
    "go": {
      "formatter": "https://mips.helmholtz-muenchen.de/corum/?id=$1",
      "homepage": "https://mips.helmholtz-muenchen.de/corum/",
      "name": "CORUM - the Comprehensive Resource of Mammalian protein complexes",
      "prefix": "CORUM"
    },
    "mappings": {
      "go": "CORUM",
      "miriam": "corum",
      "n2t": "corum",
      "prefixcommons": "CORUM",
      "uniprot": "CORUM",
      "uniprot.database": "CORUM"
    },
    "miriam": {
      "deprecated": false,
      "description": "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.",
      "homepage": "https://mips.helmholtz-muenchen.de/genre/proj/corum/",
      "id": "00000440",
      "name": "CORUM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "corum",
      "provider_url": "https://mips.helmholtz-muenchen.de/corum/?id=$1",
      "sampleId": "100"
    },
    "n2t": {
      "description": "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.",
      "example": "100",
      "homepage": "https://mips.helmholtz-muenchen.de/genre/proj/corum/",
      "name": "CORUM at Institute for Bioinformatics and Systems Biology (Germany)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "corum",
      "provider_url": "https://mips.helmholtz-muenchen.de/corum/?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/corum/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CORUM"
    },
    "uniprot": {
      "category": "Protein-protein interaction databases",
      "formatter": "http://mips.helmholtz-muenchen.de/corum/#?uniprotID=%u",
      "identifier": "224",
      "link_is_explicit": "true",
      "name": "CORUM comprehensive resource of mammalian protein complexes",
      "prefix": "CORUM"
    }
  },
  "cosmic": {
    "cellosaurus": {
      "category": "Polymorphism and mutation databases",
      "homepage": "https://cancer.sanger.ac.uk/cosmic",
      "name": "Catalogue of somatic mutations in cancer",
      "prefix": "Cosmic",
      "url": "https://cancer.sanger.ac.uk/cosmic/sample/overview?id=$1"
    },
    "mappings": {
      "cellosaurus": "Cosmic",
      "miriam": "cosmic",
      "n2t": "cosmic",
      "prefixcommons": "COSMIC"
    },
    "miriam": {
      "deprecated": false,
      "description": "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.",
      "homepage": "http://cancer.sanger.ac.uk/cosmic/",
      "id": "00000601",
      "name": "COSMIC Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "cosmic",
      "provider_url": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1",
      "sampleId": "BRAF"
    },
    "n2t": {
      "description": "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.",
      "example": "BRAF",
      "homepage": "http://cancer.sanger.ac.uk/cosmic/",
      "name": "COSMIC Gene at Sanger",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "cosmic",
      "provider_url": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1"
    },
    "prefixcommons": {
      "formatter": "http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "COSMIC"
    }
  },
  "cosmic.cell": {
    "example": "906801",
    "homepage": "https://cancer.sanger.ac.uk/cell_lines/",
    "name": "COSMIC Cell Lines",
    "url": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1"
  },
  "covid19": {
    "bioportal": {
      "name": "COVID-19 Ontology",
      "prefix": "COVID-19"
    },
    "mappings": {
      "bioportal": "COVID-19",
      "miriam": "covid19"
    },
    "miriam": {
      "deprecated": false,
      "description": "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.",
      "homepage": "https://covid19.sfb.uit.no",
      "id": "00000789",
      "name": "SARS-CoV-2",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+_COVID19_[-\\w]+$",
      "prefix": "covid19",
      "provider_url": "https://covid19.sfb.uit.no/api/records/$1",
      "sampleId": "SFB_COVID19_MW286762"
    }
  },
  "covoc": {
    "mappings": {
      "ols": "covoc"
    },
    "ols": {
      "description": "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more.",
      "download": "https://github.com/EBISPOT/covoc/releases/download/current/covoc.owl",
      "homepage": "https://github.com/EBISPOT/covoc",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "CoVoc Coronavirus Vocabulary",
      "prefix": "covoc",
      "version": "2020-08-28",
      "version.iri": "http://purl.obolibrary.org/obo/covoc/releases/2020-08-28/covoc.owl"
    }
  },
  "cp": {
    "appears_in": [
      "cl"
    ],
    "comment": "Part of cell ontology but deprecated, see https://github.com/obophenotype/cell-ontology/issues/572",
    "name": "Cellular Phenotypes"
  },
  "cpc": {
    "mappings": {
      "miriam": "cpc",
      "n2t": "cpc",
      "prefixcommons": "CPC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013.",
      "homepage": "https://worldwide.espacenet.com/classification",
      "id": "00000539",
      "name": "Cooperative Patent Classification",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$",
      "prefix": "cpc",
      "provider_url": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1",
      "sampleId": "A01M1/026"
    },
    "n2t": {
      "description": "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013.",
      "example": "A01M1/026",
      "homepage": "https://worldwide.espacenet.com/classification",
      "name": "Cooperative Patent Classification at Espace",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$",
      "prefix": "cpc",
      "provider_url": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cpc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CPC"
    }
  },
  "crisprdb": {
    "mappings": {
      "miriam": "crisprdb",
      "n2t": "crisprdb",
      "prefixcommons": "CRISPRDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data.",
      "homepage": "http://crispr.i2bc.paris-saclay.fr/",
      "id": "00000626",
      "name": "CRISPRdb",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "crisprdb",
      "provider_url": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1",
      "sampleId": "551115"
    },
    "n2t": {
      "description": "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data.",
      "example": "551115",
      "homepage": "http://crispr.i2bc.paris-saclay.fr/",
      "name": "CRISPRdb",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "crisprdb",
      "provider_url": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/crisprdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CRISPRDB"
    }
  },
  "cro": {
    "bioportal": {
      "name": "Contributor Role Ontology",
      "prefix": "CRO"
    },
    "download_obo": "https://raw.githubusercontent.com/data2health/contributor-role-ontology/master/cro.obo",
    "example": "0000038",
    "mappings": {
      "bioportal": "CRO",
      "obofoundry": "cro",
      "ols": "cro",
      "prefixcommons": "CRO"
    },
    "obofoundry": {
      "contact": "whimar@ohsu.edu",
      "contact.label": "Marijane White",
      "deprecated": false,
      "description": "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability.",
      "download.owl": "http://purl.obolibrary.org/obo/cro.owl",
      "homepage": "https://github.com/data2health/contributor-role-ontology",
      "license": "CC-BY",
      "name": "Contributor Role Ontology",
      "prefix": "cro"
    },
    "ols": {
      "description": "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability.",
      "download": "http://purl.obolibrary.org/obo/cro.owl",
      "homepage": "https://github.com/data2health/contributor-role-ontology",
      "name": "Contributor Role Ontology",
      "prefix": "cro",
      "version": "2019-12-11",
      "version.iri": "http://purl.obolibrary.org/obo/cro/releases/2019-12-11/cro.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CRO"
    }
  },
  "cryoem": {
    "bioportal": {
      "name": "Cryo Electron Microscopy",
      "prefix": "CRYOEM"
    },
    "mappings": {
      "bioportal": "CRYOEM",
      "ols": "cryoem"
    },
    "ols": {
      "contact": "isanchez@cnb.csic.es",
      "description": "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles",
      "download": "http://scipion.i2pc.es/ontology/cryoem.owl",
      "homepage": "http://scipion.i2pc.es/ontology/cryoem",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Cryo Electron Microscopy ontology",
      "prefix": "cryoem",
      "version": "2021-03-09",
      "version.iri": "http://scipion.i2pc.es/ontology/cryoem/releases/2021-03-09/cryoem.owl"
    }
  },
  "cryptodb": {
    "mappings": {
      "miriam": "cryptodb",
      "n2t": "cryptodb",
      "prefixcommons": "CRYPTODB"
    },
    "miriam": {
      "deprecated": false,
      "description": "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "https://cryptodb.org/cryptodb/",
      "id": "00000149",
      "name": "CryptoDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+",
      "prefix": "cryptodb",
      "provider_url": "https://cryptodb.org/cryptodb/app/record/gene/$1",
      "sampleId": "cgd7_230"
    },
    "n2t": {
      "description": "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "cgd7_230",
      "homepage": "https://cryptodb.org/cryptodb/",
      "name": "CryptoDB at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+",
      "prefix": "cryptodb",
      "provider_url": "https://cryptodb.org/cryptodb/app/record/gene/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cryptodb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CRYPTODB"
    }
  },
  "csa": {
    "mappings": {
      "miriam": "csa",
      "n2t": "csa",
      "prefixcommons": "CSA"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.",
      "homepage": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/",
      "id": "00000144",
      "name": "CSA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}$",
      "prefix": "csa",
      "provider_url": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1",
      "sampleId": "1a05"
    },
    "n2t": {
      "description": "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.",
      "example": "1a05",
      "homepage": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/",
      "name": "CSA at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}$",
      "prefix": "csa",
      "provider_url": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1"
    },
    "name": "Catalytic Site Atlas",
    "prefixcommons": {
      "formatter": "http://identifiers.org/csa/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CSA"
    }
  },
  "csd": {
    "mappings": {
      "miriam": "csd"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode.",
      "homepage": "https://www.ccdc.cam.ac.uk/",
      "id": "00000820",
      "name": "Cambridge Structural Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{6}(\\d{2})?$",
      "prefix": "csd",
      "provider_url": "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG",
      "sampleId": "PELNAW"
    }
  },
  "csp": {
    "example": "2004-2820",
    "name": "CRISP Thesaurus",
    "synonyms": [
      "CRISP Thesaurus, 2006",
      "CRISP Thesaurus",
      "CSP2005"
    ]
  },
  "cst": {
    "bioportal": {
      "name": "Cancer Staging Terms",
      "prefix": "CST"
    },
    "mappings": {
      "bioportal": "CST",
      "miriam": "cst",
      "n2t": "cst",
      "prefixcommons": "CST"
    },
    "miriam": {
      "deprecated": false,
      "description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.",
      "homepage": "http://www.cellsignal.com/pathways/index.html",
      "id": "00000429",
      "name": "Cell Signaling Technology Pathways",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9_-]+$",
      "prefix": "cst",
      "provider_url": "http://www.cellsignal.com/reference/pathway/$1.html",
      "sampleId": "Akt_PKB"
    },
    "n2t": {
      "description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.",
      "example": "Akt_PKB",
      "homepage": "http://www.cellsignal.com/pathways/index.html",
      "name": "CST Pathways at Cell Signaling Technology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9_-]+$",
      "prefix": "cst",
      "provider_url": "http://www.cellsignal.com/reference/pathway/$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cst/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CST"
    }
  },
  "cst.ab": {
    "mappings": {
      "miriam": "cst.ab",
      "n2t": "cst.ab",
      "prefixcommons": "CST.AB"
    },
    "miriam": {
      "deprecated": false,
      "description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products.",
      "homepage": "http://www.cellsignal.com/catalog/index.html",
      "id": "00000430",
      "name": "Cell Signaling Technology Antibody",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cst.ab",
      "provider_url": "http://www.cellsignal.com/products/$1.html",
      "sampleId": "3305"
    },
    "n2t": {
      "description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products.",
      "example": "3305",
      "homepage": "http://www.cellsignal.com/catalog/index.html",
      "name": "CST Antibody at Cell Signaling Technology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "cst.ab",
      "provider_url": "http://www.cellsignal.com/products/$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/cst.ab/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CST.AB"
    }
  },
  "ctd.chemical": {
    "mappings": {
      "miriam": "ctd.chemical",
      "n2t": "ctd.chemical",
      "prefixcommons": "CTD.CHEMICAL"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.",
      "homepage": "http://ctdbase.org/",
      "id": "00000098",
      "name": "CTD Chemical",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[CD]\\d+$",
      "prefix": "ctd.chemical",
      "provider_url": "http://ctdbase.org/detail.go?type=chem&acc=$1",
      "sampleId": "D001151"
    },
    "n2t": {
      "description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.",
      "example": "D001151",
      "homepage": "http://ctdbase.org/",
      "name": "Comparative Toxicogenomics Database (Chemical)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[CD]\\d+$",
      "prefix": "ctd.chemical",
      "provider_url": "http://ctdbase.org/detail.go?type=chem&acc=$1"
    },
    "part_of": "ctd",
    "prefixcommons": {
      "formatter": "http://identifiers.org/ctd.chemical/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CTD.CHEMICAL"
    },
    "provides": "mesh"
  },
  "ctd.disease": {
    "mappings": {
      "miriam": "ctd.disease",
      "n2t": "ctd.disease",
      "prefixcommons": "CTD.DISEASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.",
      "homepage": "http://ctdbase.org/",
      "id": "00000099",
      "name": "CTD Disease",
      "namespaceEmbeddedInLui": false,
      "pattern": "^D\\d+$",
      "prefix": "ctd.disease",
      "provider_url": "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1",
      "sampleId": "D053716"
    },
    "n2t": {
      "description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.",
      "example": "D053716",
      "homepage": "http://ctdbase.org/",
      "name": "Comparative Toxicogenomics Database (Disease)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^D\\d+$",
      "prefix": "ctd.disease",
      "provider_url": "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1"
    },
    "part_of": "ctd",
    "prefixcommons": {
      "formatter": "http://identifiers.org/ctd.disease/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CTD.DISEASE"
    },
    "provides": "mesh"
  },
  "ctd.gene": {
    "mappings": {
      "miriam": "ctd.gene",
      "n2t": "ctd.gene",
      "prefixcommons": "CTD.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.",
      "homepage": "http://ctdbase.org/",
      "id": "00000100",
      "name": "CTD Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ctd.gene",
      "provider_url": "http://ctdbase.org/detail.go?type=gene&acc=$1",
      "sampleId": "101"
    },
    "n2t": {
      "description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.",
      "example": "101",
      "homepage": "http://ctdbase.org/",
      "name": "Comparative Toxicogenomics Database (Gene)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ctd.gene",
      "provider_url": "http://ctdbase.org/detail.go?type=gene&acc=$1"
    },
    "part_of": "ctd",
    "prefixcommons": {
      "formatter": "http://identifiers.org/ctd.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "CTD.GENE"
    },
    "provides": "ncbigene"
  },
  "cteno": {
    "bioportal": {
      "name": "Ctenophore Ontology",
      "prefix": "CTENO"
    },
    "download_obo": "https://raw.githubusercontent.com/obophenotype/ctenophore-ontology/master/cteno.obo",
    "example": "0000047",
    "mappings": {
      "bioportal": "CTENO",
      "obofoundry": "cteno",
      "ols": "cteno",
      "prefixcommons": "CTENO"
    },
    "obofoundry": {
      "contact": "cjmungall@lbl.gov",
      "contact.label": "Chris Mungall",
      "deprecated": false,
      "description": "An anatomical and developmental ontology for ctenophores (Comb Jellies)",
      "download.owl": "http://purl.obolibrary.org/obo/cteno.owl",
      "homepage": "https://github.com/obophenotype/ctenophore-ontology",
      "license": "CC-BY",
      "name": "Ctenophore Ontology",
      "prefix": "cteno"
    },
    "ols": {
      "description": "An anatomical and developmental ontology for ctenophores (Comb Jellies)",
      "download": "http://purl.obolibrary.org/obo/cteno.owl",
      "homepage": "https://github.com/obophenotype/ctenophore-ontology",
      "name": "Ctenophore Ontology",
      "prefix": "cteno",
      "version": "2016-10-19",
      "version.iri": "http://purl.obolibrary.org/obo/cteno/releases/2016-10-19/cteno.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/CTENO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "CTENO"
    }
  },
  "cto": {
    "bioportal": {
      "name": "Clinical Trials Ontology",
      "prefix": "CTO"
    },
    "mappings": {
      "bioportal": "CTO",
      "obofoundry": "cto",
      "ols": "cto"
    },
    "obofoundry": {
      "contact": "alpha.tom.kodamullil@scai.fraunhofer.de",
      "contact.label": "Dr. Alpha Tom Kodamullil",
      "deprecated": false,
      "description": "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials.",
      "download.owl": "http://purl.obolibrary.org/obo/cto.owl",
      "homepage": "https://github.com/ClinicalTrialOntology/CTO/",
      "license": "CC-BY",
      "name": "CTO: Core Ontology of Clinical Trials",
      "prefix": "cto"
    },
    "ols": {
      "description": "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials.",
      "download": "http://purl.obolibrary.org/obo/cto.owl",
      "homepage": "https://github.com/BFO-ontology/BFO",
      "license": "http://creativecommons.org/licenses/by/4.0",
      "name": "CTO: Core Ontology of Clinical Trials",
      "prefix": "cto",
      "version": "1.0.0"
    }
  },
  "cubedb": {
    "mappings": {
      "miriam": "cubedb",
      "n2t": "cubedb",
      "prefixcommons": "CUBEDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.",
      "homepage": "http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html",
      "id": "00000397",
      "name": "Cube db",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z_0-9]+$",
      "prefix": "cubedb",
      "provider_url": "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/",
      "sampleId": "AKR"
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    "n2t": {
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      "provider_url": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1"
    },
    "name": "Database of Genotypes and Phenotypes",
    "prefixcommons": {
      "formatter": "http://identifiers.org/dbgap/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DBGAP"
    }
  },
  "dbmhc": {
    "appears_in": [
      "cellosaurus"
    ],
    "cellosaurus": {
      "category": "Cell line databases/resources",
      "homepage": "https://www.ncbi.nlm.nih.gov/gv/mhc/",
      "name": "dbMHC database",
      "prefix": "dbMHC"
    },
    "deprecated": true,
    "example": "48439",
    "mappings": {
      "cellosaurus": "dbMHC"
    },
    "name": "Database of human Major Histocompatibility Complex"
  },
  "dbprobe": {
    "mappings": {
      "miriam": "dbprobe",
      "n2t": "dbprobe",
      "ncbi": "dbProbe",
      "prefixcommons": "DBPROBE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.",
      "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe",
      "id": "00000160",
      "name": "dbProbe",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "dbprobe",
      "provider_url": "https://www.ncbi.nlm.nih.gov/probe/?term=$1",
      "sampleId": "1000000"
    },
    "n2t": {
      "description": "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.",
      "example": "1000000",
      "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe",
      "name": "dbProbe at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "dbprobe",
      "provider_url": "https://www.ncbi.nlm.nih.gov/probe/?term=$1"
    },
    "ncbi": {
      "example": "38",
      "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe",
      "name": "NCBI Probe database Public registry of nucleic acid reagents",
      "prefix": "dbProbe"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/dbprobe/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DBPROBE"
    }
  },
  "dbsnp": {
    "cellosaurus": {
      "category": "Polymorphism and mutation databases",
      "homepage": "https://www.ncbi.nlm.nih.gov/snp/",
      "name": "Single Nucleotide Polymorphism database",
      "prefix": "dbSNP",
      "url": "https://www.ncbi.nlm.nih.gov/snp/$1"
    },
    "go": {
      "formatter": "http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$1",
      "homepage": "http://www.ncbi.nlm.nih.gov/projects/SNP",
      "name": "NCBI dbSNP",
      "prefix": "dbSNP"
    },
    "mappings": {
      "cellosaurus": "dbSNP",
      "go": "dbSNP",
      "miriam": "dbsnp",
      "n2t": "dbsnp",
      "ncbi": "dbSNP",
      "prefixcommons": "dbSNP",
      "uniprot": "dbSNP",
      "uniprot.database": "dbSNP"
    },
    "miriam": {
      "deprecated": false,
      "description": "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.",
      "homepage": "https://ccg.epfl.ch/snp2tfbs/",
      "id": "00000161",
      "name": "dbSNP",
      "namespaceEmbeddedInLui": false,
      "pattern": "^rs\\d+$",
      "prefix": "dbsnp",
      "provider_url": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1",
      "sampleId": "rs121909098"
    },
    "n2t": {
      "description": "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.",
      "example": "rs121909098",
      "homepage": "https://www.ncbi.nlm.nih.gov/snp/",
      "name": "dbSNP at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^rs\\d+$",
      "prefix": "dbsnp",
      "provider_url": "https://www.ncbi.nlm.nih.gov/snp/$1"
    },
    "ncbi": {
      "example": "4647",
      "homepage": "https://www.ncbi.nlm.nih.gov/snp",
      "name": "Variation database maintained at the NCBI.",
      "prefix": "dbSNP"
    },
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "dbSNP"
    },
    "uniprot": {
      "category": "Genetic variation databases",
      "formatter": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=%s",
      "identifier": "13",
      "link_is_explicit": "true",
      "name": "Database of single nucleotide polymorphism",
      "prefix": "dbSNP"
    }
  },
  "dc": {
    "appears_in": [
      "efo"
    ],
    "bioportal": {
      "name": "Dublin Core",
      "prefix": "DC"
    },
    "download_obo": "https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo",
    "example": "0000598",
    "mappings": {
      "bioportal": "DC",
      "prefixcommons": "dc"
    },
    "name": "Disease Class",
    "prefixcommons": {
      "formatter": "http://purl.org/dc/elements/1.1/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "dc"
    }
  },
  "dc_cl": {
    "mappings": {
      "obofoundry": "dc_cl",
      "prefixcommons": "DC_CL"
    },
    "obofoundry": {
      "contact": "Lindsay Cowell",
      "contact.label": "Lindsay.Cowell@utsouthwestern.edu",
      "deprecated": true,
      "homepage": "http://www.dukeontologygroup.org/Projects.html",
      "name": "Dendritic cell",
      "prefix": "dc_cl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/DC_CL_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "DC_CL"
    }
  },
  "dcat": {
    "biolink": {
      "formatter": "http://www.w3.org/ns/dcat#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "dcat"
    },
    "bioportal": {
      "name": "Data Catalog Vocabulary",
      "prefix": "DCAT"
    },
    "example": "Dataset",
    "homepage": "https://www.w3.org/ns/dcat",
    "mappings": {
      "biolink": "dcat",
      "bioportal": "DCAT",
      "prefixcommons": "dcat"
    },
    "name": "Data Catalog",
    "prefixcommons": {
      "formatter": "http://www.w3.org/ns/dcat#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "dcat"
    },
    "url": "http://www.w3.org/ns/dcat#$1"
  },
  "dcterms": {
    "biolink": {
      "formatter": "http://purl.org/dc/terms/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "dct"
    },
    "bioportal": {
      "name": "DCMI Metadata Terms: properties in /terms/ namespace",
      "prefix": "DCTERMS"
    },
    "example": "title",
    "mappings": {
      "biolink": "dct",
      "bioportal": "DCTERMS",
      "prefixcommons": "dcterms"
    },
    "name": "Dublin Core Metadata Vocabulary",
    "prefixcommons": {
      "formatter": "http://purl.org/dc/terms/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "dcterms"
    },
    "synonyms": [
      "dc.terms"
    ],
    "url": "https://dublincore.org/specifications/dublin-core/dcmi-terms/#$1"
  },
  "dctypes": {
    "example": "Collection",
    "homepage": "https://dublincore.org/specifications/dublin-core/dcmi-terms/",
    "mappings": {
      "prefixcommons": "dctypes"
    },
    "name": "Dublin Core Types",
    "prefixcommons": {
      "formatter": "http://purl.org/dc/dcmitype/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "dctypes"
    },
    "url": "http://purl.org/dc/dcmitype/$1"
  },
  "ddanat": {
    "bioportal": {
      "name": "Dictyostelium Discoideum Anatomy Ontology",
      "prefix": "DDANAT"
    },
    "example": "0000006",
    "go": {
      "homepage": "http://dictybase.org/Dicty_Info/dicty_anatomy_ontology.html",
      "name": "Dictyostelium discoideum anatomy",
      "prefix": "DDANAT"
    },
    "mappings": {
      "bioportal": "DDANAT",
      "go": "DDANAT",
      "obofoundry": "ddanat",
      "ols": "ddanat",
      "prefixcommons": "DDANAT"
    },
    "obofoundry": {
      "contact": "pfey@northwestern.edu",
      "contact.label": "Petra Fey",
      "deprecated": false,
      "description": "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum",
      "download.obo": "http://purl.obolibrary.org/obo/ddanat.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ddanat.owl",
      "homepage": "http://dictybase.org/",
      "license": "CC0 1.0 Universal",
      "name": "Dictyostelium discoideum anatomy",
      "prefix": "ddanat"
    },
    "ols": {
      "description": "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum",
      "download": "http://purl.obolibrary.org/obo/ddanat.owl",
      "homepage": "http://dictybase.org/",
      "name": "Dictyostelium discoideum anatomy",
      "prefix": "ddanat",
      "version": "2020-04-13",
      "version.iri": "http://purl.obolibrary.org/obo/ddanat/releases/2020-04-13/ddanat.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/DDANAT_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "DDANAT"
    }
  },
  "ddpheno": {
    "bioportal": {
      "name": "Dictyostelium Discoideum Phenotype Ontology",
      "prefix": "DDPHENO"
    },
    "download_obo": "https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo",
    "example": "0001417",
    "mappings": {
      "bioportal": "DDPHENO",
      "obofoundry": "ddpheno",
      "ols": "ddpheno",
      "prefixcommons": "DDPHENO"
    },
    "obofoundry": {
      "contact": "pfey@northwestern.edu",
      "contact.label": "Petra Fey",
      "deprecated": false,
      "description": "A structured controlled vocabulary of phenotypes of the slime-mould <i>Dictyostelium discoideum</i>.",
      "download.obo": "http://purl.obolibrary.org/obo/ddpheno.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ddpheno.owl",
      "homepage": "http://dictybase.org/",
      "license": "CC-0",
      "name": "Dictyostelium discoideum phenotype ontology",
      "prefix": "ddpheno"
    },
    "ols": {
      "description": "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum.",
      "download": "http://purl.obolibrary.org/obo/ddpheno.owl",
      "homepage": "http://dictybase.org/",
      "name": "Dicty Phenotype Ontology (DDPHENO)",
      "prefix": "ddpheno",
      "version": "2020-06-19",
      "version.iri": "http://purl.obolibrary.org/obo/ddpheno/releases/2020-06-19/ddpheno.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/DDPHENO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "DDPHENO"
    }
  },
  "degradome": {
    "mappings": {
      "miriam": "degradome",
      "n2t": "degradome",
      "prefixcommons": "DEGRADOME"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced.",
      "homepage": "http://degradome.uniovi.es/",
      "id": "00000454",
      "name": "Degradome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[AMCST][0-9x][0-9]$",
      "prefix": "degradome",
      "provider_url": "http://degradome.uniovi.es/cgi-bin/protease/$1",
      "sampleId": "Ax1"
    },
    "n2t": {
      "description": "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced.",
      "example": "Ax1",
      "homepage": "http://degradome.uniovi.es/",
      "name": "Degradome Database at",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[AMCST][0-9x][0-9]$",
      "prefix": "degradome",
      "provider_url": "http://degradome.uniovi.es/cgi-bin/protease/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/degradome/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DEGRADOME"
    }
  },
  "depmap": {
    "cellosaurus": {
      "category": "Cell line databases/resources",
      "homepage": "https://depmap.org/portal/",
      "name": "Cancer Dependency Map",
      "prefix": "DepMap",
      "url": "https://depmap.org/portal/cell_line/$1"
    },
    "description": "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.",
    "example": "ACH-000001",
    "homepage": "https://depmap.org/portal",
    "mappings": {
      "cellosaurus": "DepMap"
    },
    "name": "DepMap Cell Lines",
    "pattern": "^ACH-\\d+$",
    "url": "https://depmap.org/portal/cell_line/$1"
  },
  "depod": {
    "mappings": {
      "miriam": "depod",
      "n2t": "depod",
      "prefixcommons": "DEPOD",
      "uniprot": "DEPOD",
      "uniprot.database": "DEPOD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.",
      "homepage": "http://www.depod.bioss.uni-freiburg.de",
      "id": "00000428",
      "name": "DEPOD",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "depod",
      "provider_url": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1",
      "sampleId": "PTPN1"
    },
    "n2t": {
      "description": "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.",
      "example": "PTPN1",
      "homepage": "http://www.depod.bioss.uni-freiburg.de",
      "name": "DEPOD at EMBL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "depod",
      "provider_url": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1"
    },
    "name": "Human Dephosphorylation Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/depod/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DEPOD"
    },
    "provides": "hgnc.symbol",
    "uniprot": {
      "category": "PTM databases",
      "formatter": "http://depod.bioss.uni-freiburg.de/showp.php?name=%s",
      "identifier": "190",
      "link_is_explicit": "true",
      "name": "DEPOD human dephosphorylation database",
      "prefix": "DEPOD"
    }
  },
  "dermo": {
    "bioportal": {
      "name": "Human Dermatological Disease Ontology",
      "prefix": "DERMO"
    },
    "mappings": {
      "bioportal": "DERMO"
    },
    "name": "Human Dermatological Disease Ontology"
  },
  "dev.ga4ghdos": {
    "mappings": {
      "miriam": "dev.ga4ghdos",
      "n2t": "dev.ga4ghdos",
      "prefixcommons": "DEV.GA4GHDOS"
    },
    "miriam": {
      "deprecated": false,
      "description": "Assists in resolving data across cloud resources.",
      "homepage": "http://github.com/ga4gh/data-object-service-schemas",
      "id": "00000656",
      "name": "Development Data Object Service",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-zA-Z0-9\\-:#\\.]+$",
      "prefix": "dev.ga4ghdos",
      "provider_url": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1",
      "sampleId": "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00"
    },
    "n2t": {
      "description": "Assists in resolving data across cloud resources.",
      "example": "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00",
      "homepage": "http://github.com/ga4gh/data-object-service-schemas",
      "name": "Data Object Service",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-zA-Z0-9\\-:#\\.]+$",
      "prefix": "dev.ga4ghdos",
      "provider_url": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/dev.ga4ghdos/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DEV.GA4GHDOS"
    }
  },
  "dicom": {
    "bioportal": {
      "name": "DICOM Controlled Terminology",
      "prefix": "DCM"
    },
    "mappings": {
      "bioportal": "DCM",
      "ols": "dicom"
    },
    "ols": {
      "contact": "dclunie@dclunie.com",
      "description": "DICOM Controlled Terminology",
      "download": "ftp://medical.nema.org/MEDICAL/Dicom/Resources/Ontology/DCM/dcm.owl",
      "homepage": "http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html",
      "name": "DICOM Controlled Terminology",
      "prefix": "dicom",
      "version": "2021a_20210130"
    }
  },
  "dictybase": {
    "description": "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics",
    "go": {
      "formatter": "http://dictybase.org/gene/$1",
      "homepage": "http://dictybase.org",
      "name": "dictyBase",
      "prefix": "dictyBase",
      "synonyms": [
        "DDB",
        "DictyBase"
      ]
    },
    "mappings": {
      "go": "dictyBase",
      "ncbi": "dictyBase",
      "prefixcommons": "dictyBase",
      "uniprot": "dictyBase",
      "uniprot.database": "dictyBase"
    },
    "name": "dictyBase",
    "ncbi": {
      "example": "DDB0191090",
      "homepage": "http://dictybase.org/",
      "name": "Dictyostelium genome database",
      "prefix": "dictyBase"
    },
    "prefixcommons": {
      "formatter": "http://dictybase.org/gene/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "dictyBase"
    },
    "synonyms": [
      "dictyBase"
    ],
    "uniprot": {
      "category": "Organism-specific databases",
      "comment": "Replacement for DictyBase",
      "formatter": "http://dictybase.org/db/cgi-bin/gene_page.pl?primary_id=%s",
      "identifier": "15",
      "link_is_explicit": "true",
      "name": "Dictyostelium discoideum online informatics resource",
      "prefix": "dictyBase"
    }
  },
  "dictybase.est": {
    "mappings": {
      "miriam": "dictybase.est",
      "n2t": "dictybase.est",
      "prefixcommons": "DICTYBASE.EST"
    },
    "miriam": {
      "deprecated": false,
      "description": "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information.",
      "homepage": "http://dictybase.org/",
      "id": "00000330",
      "name": "Dictybase EST",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DDB\\d+$",
      "prefix": "dictybase.est",
      "provider_url": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1",
      "sampleId": "DDB0016567"
    },
    "n2t": {
      "description": "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information.",
      "example": "DDB0016567",
      "homepage": "http://dictybase.org/",
      "name": "Dictybase Gene at Northwestern University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DDB\\d+$",
      "prefix": "dictybase.est",
      "provider_url": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1"
    },
    "name": "dictyBase Expressed Sequence Tag",
    "part_of": "dictybase",
    "prefixcommons": {
      "formatter": "http://identifiers.org/dictybase.est/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DICTYBASE.EST"
    }
  },
  "dictybase.gene": {
    "mappings": {
      "miriam": "dictybase.gene",
      "n2t": "dictybase.gene",
      "prefixcommons": "DICTYBASE.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information.",
      "homepage": "http://dictybase.org/",
      "id": "00000286",
      "name": "Dictybase Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DDB_G\\d+$",
      "prefix": "dictybase.gene",
      "provider_url": "http://dictybase.org/gene/$1",
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      "description": "An ontology of commonly encountered and/or high level Drosophila phenotypes.",
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      "prefix": "dpo",
      "version": "2021-07-15",
      "version.iri": "http://purl.obolibrary.org/obo/dpo/releases/2021-07-15/dpo.owl"
    }
  },
  "dpv": {
    "mappings": {
      "miriam": "dpv",
      "n2t": "dpv",
      "prefixcommons": "DPV"
    },
    "miriam": {
      "deprecated": false,
      "description": "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene.",
      "homepage": "http://www.dpvweb.net/",
      "id": "00000280",
      "name": "DPV",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "dpv",
      "provider_url": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$1",
      "sampleId": "100"
    },
    "n2t": {
      "description": "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene.",
      "example": "100",
      "homepage": "http://www.dpvweb.net/",
      "name": "DPV at Rothamsted",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "dpv",
      "provider_url": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$1"
    },
    "name": "Description of Plant Viruses",
    "prefixcommons": {
      "formatter": "http://identifiers.org/dpv/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DPV"
    }
  },
  "dragondb.allele": {
    "mappings": {
      "miriam": "dragondb.allele",
      "n2t": "dragondb.allele",
      "prefixcommons": "DRAGONDB.ALLELE"
    },
    "miriam": {
      "deprecated": false,
      "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information.",
      "homepage": "http://www.antirrhinum.net/",
      "id": "00000300",
      "name": "DragonDB Allele",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "dragondb.allele",
      "provider_url": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&amp;class=Allele",
      "sampleId": "cho"
    },
    "n2t": {
      "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information.",
      "example": "cho",
      "homepage": "http://www.antirrhinum.net/",
      "name": "DragonDB Allele at University of British Columbia",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "dragondb.allele",
      "provider_url": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&amp;class=Allele"
    },
    "part_of": "dragondb",
    "prefixcommons": {
      "formatter": "http://identifiers.org/dragondb.allele/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DRAGONDB.ALLELE"
    }
  },
  "dragondb.dna": {
    "mappings": {
      "miriam": "dragondb.dna",
      "n2t": "dragondb.dna",
      "prefixcommons": "DRAGONDB.DNA"
    },
    "miriam": {
      "deprecated": false,
      "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information.",
      "homepage": "http://www.antirrhinum.net/",
      "id": "00000297",
      "name": "DragonDB DNA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d\\w+$",
      "prefix": "dragondb.dna",
      "provider_url": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA",
      "sampleId": "3hB06"
    },
    "n2t": {
      "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information.",
      "example": "3hB06",
      "homepage": "http://www.antirrhinum.net/",
      "name": "DragonDB DNA at University of British Columbia",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d\\w+$",
      "prefix": "dragondb.dna",
      "provider_url": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA"
    },
    "part_of": "dragondb",
    "prefixcommons": {
      "formatter": "http://identifiers.org/dragondb.dna/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DRAGONDB.DNA"
    }
  },
  "dragondb.locus": {
    "mappings": {
      "miriam": "dragondb.locus",
      "n2t": "dragondb.locus",
      "prefixcommons": "DRAGONDB.LOCUS"
    },
    "miriam": {
      "deprecated": false,
      "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information.",
      "homepage": "http://www.antirrhinum.net/",
      "id": "00000299",
      "name": "DragonDB Locus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "dragondb.locus",
      "provider_url": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&amp;class=Locus",
      "sampleId": "DEF"
    },
    "n2t": {
      "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information.",
      "example": "DEF",
      "homepage": "http://www.antirrhinum.net/",
      "name": "DragonDB Locus at University of British Columbia",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "dragondb.locus",
      "provider_url": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&amp;class=Locus"
    },
    "part_of": "dragondb",
    "prefixcommons": {
      "formatter": "http://identifiers.org/dragondb.locus/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DRAGONDB.LOCUS"
    }
  },
  "dragondb.protein": {
    "mappings": {
      "miriam": "dragondb.protein",
      "n2t": "dragondb.protein",
      "prefixcommons": "DRAGONDB.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information.",
      "homepage": "http://www.antirrhinum.net/",
      "id": "00000298",
      "name": "DragonDB Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "dragondb.protein",
      "provider_url": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide",
      "sampleId": "AMDEFA"
    },
    "n2t": {
      "description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information.",
      "example": "AMDEFA",
      "homepage": "http://www.antirrhinum.net/",
      "name": "DragonDB Protein at University of British Columbia",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "dragondb.protein",
      "provider_url": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide"
    },
    "part_of": "dragondb",
    "prefixcommons": {
      "formatter": "http://identifiers.org/dragondb.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DRAGONDB.PROTEIN"
    }
  },
  "dron": {
    "bioportal": {
      "name": "The Drug Ontology",
      "prefix": "DRON"
    },
    "mappings": {
      "bioportal": "DRON",
      "obofoundry": "dron",
      "ols": "dron",
      "prefixcommons": "DRON"
    },
    "obofoundry": {
      "contact": "hoganwr@gmail.com",
      "contact.label": "William Hogan",
      "deprecated": false,
      "description": "An ontology to support comparative effectiveness researchers studying claims data.",
      "download.owl": "http://purl.obolibrary.org/obo/dron.owl",
      "homepage": "https://bitbucket.org/uamsdbmi/dron.git",
      "license": "CC-BY",
      "name": "The Drug Ontology",
      "prefix": "dron"
    },
    "ols": {
      "description": "An ontology to support comparative effectiveness researchers studying claims data.",
      "download": "http://purl.obolibrary.org/obo/dron.owl",
      "homepage": "https://bitbucket.org/uamsdbmi/dron.git",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "The Drug Ontology",
      "prefix": "dron",
      "version": "2020-06-01"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/DRON_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "DRON"
    }
  },
  "drsc": {
    "mappings": {
      "miriam": "drsc",
      "n2t": "drsc",
      "prefixcommons": "DRSC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides  information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene.",
      "homepage": "http://flyrnai.org/",
      "id": "00000367",
      "name": "DRSC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DRSC\\d+$",
      "prefix": "drsc",
      "provider_url": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1",
      "sampleId": "DRSC05221"
    },
    "n2t": {
      "description": "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides  information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene.",
      "example": "DRSC05221",
      "homepage": "http://flyrnai.org/",
      "name": "DRSC at Harvard Medical School",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DRSC\\d+$",
      "prefix": "drsc",
      "provider_url": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1"
    },
    "name": "Drosophila RNAi Screening Center",
    "prefixcommons": {
      "formatter": "http://identifiers.org/drsc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DRSC"
    }
  },
  "drugbank": {
    "cellosaurus": {
      "category": "Chemistry resources",
      "homepage": "https://go.drugbank.com/",
      "name": "DrugBank database",
      "prefix": "DrugBank",
      "url": "https://go.drugbank.com/drugs/$1"
    },
    "example": "DB14938",
    "homepage": "http://www.drugbank.ca",
    "mappings": {
      "cellosaurus": "DrugBank",
      "miriam": "drugbank",
      "n2t": "drugbank",
      "prefixcommons": "DrugBank",
      "uniprot": "DrugBank",
      "uniprot.database": "DrugBank"
    },
    "miriam": {
      "deprecated": false,
      "description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information.",
      "homepage": "http://www.drugbank.ca/",
      "id": "00000102",
      "name": "DrugBank",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DB\\d{5}$",
      "prefix": "drugbank",
      "provider_url": "http://www.drugbank.ca/drugs/$1",
      "sampleId": "DB00001"
    },
    "n2t": {
      "description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information.",
      "example": "DB00001",
      "homepage": "http://www.drugbank.ca/",
      "name": "DrugBank drug information",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DB\\d{5}$",
      "prefix": "drugbank",
      "provider_url": "http://www.drugbank.ca/drugs/$1"
    },
    "prefixcommons": {
      "formatter": "http://www.drugbank.ca/drugs/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "DrugBank"
    },
    "synonyms": [
      "DrugBank",
      "DRUGBANK_ID"
    ],
    "uniprot": {
      "category": "Chemistry databases",
      "formatter": "https://www.drugbank.ca/drugs/%s",
      "identifier": "19",
      "link_is_explicit": "true",
      "name": "Drug and drug target database",
      "prefix": "DrugBank"
    },
    "wikidata": {
      "prefix": "P715"
    }
  },
  "drugbank.salt": {
    "example": "DBSALT001211",
    "homepage": "http://www.drugbank.ca",
    "mappings": {
      "prefixcommons": "DRUGBANK.TARGET"
    },
    "name": "DrugBank Salts",
    "part_of": "drugbank",
    "pattern": "^DBSALT\\d{6}$",
    "prefixcommons": {
      "formatter": "http://identifiers.org/drugbank.target/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DRUGBANK.TARGET"
    },
    "synonyms": [
      "drugbank.target"
    ],
    "url": "https://go.drugbank.com/salts/$1"
  },
  "drugbankv4.target": {
    "mappings": {
      "miriam": "drugbankv4.target",
      "n2t": "drugbankv4.target",
      "prefixcommons": "DRUGBANKV4.TARGET"
    },
    "miriam": {
      "deprecated": false,
      "description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.",
      "homepage": "http://www.drugbank.ca/targets",
      "id": "00000528",
      "name": "DrugBank Target v4",
      "namespaceEmbeddedInLui": false,
      "pattern": "^BE\\d{7}$",
      "prefix": "drugbankv4.target",
      "provider_url": "http://www.drugbank.ca/biodb/bio_entities/$1",
      "sampleId": "BE0000048"
    },
    "n2t": {
      "description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.",
      "example": "BE0000048",
      "homepage": "http://www.drugbank.ca/targets",
      "name": "DrugBank Target information version 4",
      "namespaceEmbeddedInLui": false,
      "pattern": "^BE\\d{7}$",
      "prefix": "drugbankv4.target",
      "provider_url": "http://www.drugbank.ca/biodb/bio_entities/$1"
    },
    "part_of": "drugbank",
    "prefixcommons": {
      "formatter": "http://identifiers.org/drugbankv4.target/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "DRUGBANKV4.TARGET"
    }
  },
  "drugcentral": {
    "biolink": {
      "formatter": "http://translator.ncats.nih.gov/DrugCentral_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "DrugCentral"
    },
    "example": "307",
    "homepage": "http://drugcentral.org",
    "mappings": {
      "biolink": "DrugCentral",
      "uniprot": "DrugCentral",
      "uniprot.database": "DrugCentral"
    },
    "name": "Drug Central",
    "synonyms": [
      "Drug_Central"
    ],
    "uniprot": {
      "category": "Chemistry databases",
      "formatter": "https://drugcentral.org/target/%u",
      "identifier": "239",
      "link_is_explicit": "true",
      "name": "DrugCentral",
      "prefix": "DrugCentral"
    },
    "url": "http://drugcentral.org/drugcard/$1"
  },
  "dsmz": {
    "example": "ACC-1",
    "name": "Deutsche Sammlung von Mikroorganismen und Zellkulturen",
    "url": "https://www.dsmz.de/collection/catalogue/details/culture/$1"
  },
  "dto": {
    "appears_in": [
      "pr"
    ],
    "bioportal": {
      "name": "Drug Target Ontology",
      "prefix": "DTO"
    },
    "homepage": "https://github.com/DrugTargetOntology/DTO",
    "mappings": {
      "bioportal": "DTO"
    },
    "name": "Drug Target Ontology"
  },
  "duo": {
    "bioportal": {
      "name": "The Data Use Ontology",
      "prefix": "DUO"
    },
    "mappings": {
      "bioportal": "DUO",
      "obofoundry": "duo",
      "ols": "duo",
      "prefixcommons": "DUO"
    },
    "not_available_as_obo": true,
    "obofoundry": {
      "contact": "mcourtot@gmail.com",
      "contact.label": "Melanie Courtot",
      "deprecated": false,
      "description": "DUO is an ontology which represent data use conditions.",
      "download.owl": "http://purl.obolibrary.org/obo/duo.owl",
      "homepage": "https://github.com/EBISPOT/DUO",
      "license": "CC-BY",
      "name": "Data Use Ontology",
      "prefix": "duo"
    },
    "ols": {
      "description": "DUO is an ontology which represent data use conditions.",
      "download": "http://purl.obolibrary.org/obo/duo.owl",
      "homepage": "https://github.com/EBISPOT/DUO",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Data Use Ontology",
      "prefix": "duo",
      "version": "2021-02-23",
      "version.iri": "http://purl.obolibrary.org/obo/duo/releases/2021-02-23/duo.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/DUO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "DUO"
    }
  },
  "eaglei": {
    "example": "0000012b-5661-2f63-2f73-b43980000000",
    "homepage": "https://hawaii.eagle-i.net",
    "name": "eagle-i",
    "url": "http://hawaii.eagle-i.net/i/$1"
  },
  "ecacc": {
    "cellosaurus": {
      "category": "Cell line collections",
      "homepage": "https://www.phe-culturecollections.org.uk/products/celllines/index.aspx",
      "name": "European Collection of Cell Cultures",
      "prefix": "ECACC",
      "url": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?refId=$1&collection=ecacc_gc"
    },
    "example": "90062901",
    "homepage": "https://www.phe-culturecollections.org.uk/collections/ecacc.aspx",
    "mappings": {
      "cellosaurus": "ECACC"
    },
    "name": "European Collection of Authenticated Cell Culture",
    "url": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1"
  },
  "ecao": {
    "bioportal": {
      "name": "The Echinoderm Anatomy and Development Ontology",
      "prefix": "ECAO"
    },
    "mappings": {
      "bioportal": "ECAO",
      "obofoundry": "ecao",
      "ols": "ecao"
    },
    "obofoundry": {
      "contact": "ettensohn@cmu.edu",
      "contact.label": "Charles Ettensohn",
      "deprecated": false,
      "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).",
      "download.obo": "http://purl.obolibrary.org/obo/ecao.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ecao.owl",
      "homepage": "https://github.com/echinoderm-ontology/ecao_ontology",
      "license": "CC-BY",
      "name": "The Echinoderm Anatomy and Development Ontology",
      "prefix": "ecao"
    },
    "ols": {
      "description": "None",
      "download": "http://purl.obolibrary.org/obo/ecao.owl",
      "homepage": "https://github.com/echinoderm-ontology/ecao_ontology",
      "name": "Echinoderm Anatomy and Development Ontology",
      "prefix": "ecao",
      "version": "2020-05-22",
      "version.iri": "http://purl.obolibrary.org/obo/ecao/releases/2020-05-22/ecao.owl"
    }
  },
  "eccode": {
    "go": {
      "formatter": "https://enzyme.expasy.org/EC/$1",
      "homepage": "http://enzyme.expasy.org/",
      "name": "Enzyme Commission",
      "prefix": "EC"
    },
    "mappings": {
      "go": "EC",
      "miriam": "ec-code",
      "n2t": "ec-code",
      "prefixcommons": "EC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.",
      "homepage": "https://enzyme.expasy.org/",
      "id": "00000004",
      "name": "Enzyme Nomenclature",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$",
      "prefix": "ec-code",
      "provider_url": "https://enzyme.expasy.org/EC/$1",
      "sampleId": "1.1.1.1"
    },
    "n2t": {
      "description": "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.",
      "example": "1.1.1.1",
      "homepage": "https://www.ebi.ac.uk/intenz/",
      "name": "IntEnZ (Integrated relational Enzyme database)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$",
      "prefix": "ec-code",
      "provider_url": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1"
    },
    "name": "Enzyme Nomenclature",
    "pattern": "^\\d{1,2}(\\.\\d{0,3}){0,3}$",
    "prefixcommons": {
      "formatter": "http://www.enzyme-database.org/query.php?ec=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "EC"
    },
    "synonyms": [
      "EC",
      "EC-CODE",
      "EC_CODE",
      "ECCODE",
      "ec-code",
      "intenz"
    ],
    "wikidata": {
      "prefix": "P591"
    }
  },
  "ecg": {
    "bioportal": {
      "name": "Electrocardiography Ontology",
      "prefix": "ECG"
    },
    "mappings": {
      "bioportal": "ECG"
    },
    "name": "Electrocardiogram Ontology",
    "synonyms": [
      "ECGOntology"
    ]
  },
  "echobase": {
    "go": {
      "formatter": "https://www.york.ac.uk/res/thomas/Gene.cfm?&recordID=$1",
      "homepage": "https://www.york.ac.uk/res/thomas/",
      "name": "EchoBASE post-genomic database for Escherichia coli",
      "prefix": "EchoBASE"
    },
    "mappings": {
      "go": "EchoBASE",
      "miriam": "echobase",
      "n2t": "echobase",
      "prefixcommons": "ECHOBASE",
      "uniprot": "EchoBASE",
      "uniprot.database": "EchoBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.",
      "homepage": "http://www.york.ac.uk/",
      "id": "00000200",
      "name": "EchoBASE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^EB\\d+$",
      "prefix": "echobase",
      "provider_url": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1",
      "sampleId": "EB0170"
    },
    "n2t": {
      "description": "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.",
      "example": "EB0170",
      "homepage": "http://www.york.ac.uk/",
      "name": "EchoBASE at the University of York",
      "namespaceEmbeddedInLui": false,
      "pattern": "^EB\\d+$",
      "prefix": "echobase",
      "provider_url": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/echobase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ECHOBASE"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=%s",
      "identifier": "20",
      "link_is_explicit": "true",
      "name": "EchoBASE - an integrated post-genomic database for E. coli",
      "prefix": "EchoBASE"
    }
  },
  "ecmdb": {
    "example": "ECMDB00005",
    "name": "E. coli Metabolite Database",
    "pattern": "^ECMDB\\d+$",
    "synonyms": [
      "ECMDB"
    ],
    "url": "http://ecmdb.ca/compounds/$1",
    "wikidata": {
      "database": "Q17052437"
    }
  },
  "eco": {
    "bioportal": {
      "name": "Evidence and Conclusion Ontology",
      "prefix": "ECO"
    },
    "example": "0007807",
    "go": {
      "formatter": "http://www.evidenceontology.org/browse/#ECO_$1",
      "homepage": "http://www.evidenceontology.org/",
      "name": "Evidence Code Ontology",
      "prefix": "ECO"
    },
    "mappings": {
      "bioportal": "ECO",
      "go": "ECO",
      "miriam": "eco",
      "n2t": "eco",
      "obofoundry": "eco",
      "ols": "eco",
      "prefixcommons": "ECO"
    },
    "miriam": {
      "deprecated": false,
      "description": "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.",
      "homepage": "http://bioportal.bioontology.org/ontologies/ECO",
      "id": "00000055",
      "name": "Evidence Code Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "ECO:\\d{7}$",
      "prefix": "eco",
      "provider_url": "http://purl.bioontology.org/ontology/ECO/ECO:$1",
      "sampleId": "0000006"
    },
    "n2t": {
      "description": "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.",
      "example": "0000006",
      "homepage": "http://bioportal.bioontology.org/ontologies/ECO",
      "name": "Evidence Code Ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "ECO:\\d{7}$",
      "prefix": "eco",
      "provider_url": "http://purl.bioontology.org/ontology/ECO/ECO:$1"
    },
    "obofoundry": {
      "contact": "mgiglio@som.umaryland.edu",
      "contact.label": "Michelle Giglio",
      "deprecated": false,
      "description": "An ontology for experimental and other evidence statements.",
      "download.obo": "http://purl.obolibrary.org/obo/eco.obo",
      "download.owl": "http://purl.obolibrary.org/obo/eco.owl",
      "homepage": "https://github.com/evidenceontology/evidenceontology/",
      "license": "CC0 1.0 Universal",
      "name": "Evidence ontology",
      "prefix": "eco"
    },
    "ols": {
      "description": "The Evidence & Conclusion Ontology (ECO) describes types of scientific evidence within the biological research domain that arise from laboratory experiments, computational methods, literature curation, or other means.",
      "download": "http://purl.obolibrary.org/obo/eco.owl",
      "homepage": "https://github.com/evidenceontology/evidenceontology/",
      "license": "https://creativecommons.org/publicdomain/zero/1.0/",
      "name": "Evidence & Conclusion Ontology (ECO)",
      "prefix": "eco",
      "version": "2021-07-02",
      "version.iri": "http://purl.obolibrary.org/obo/eco/releases/2021-07-02/eco.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ECO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ECO"
    }
  },
  "ecocore": {
    "bioportal": {
      "name": "An ontology of core ecological entities",
      "prefix": "ECOCORE"
    },
    "example": "00000001",
    "mappings": {
      "bioportal": "ECOCORE",
      "obofoundry": "ecocore",
      "ols": "ecocore",
      "prefixcommons": "ECOCORE"
    },
    "obofoundry": {
      "contact": "p.buttigieg@gmail.com",
      "contact.label": "Pier Luigi Buttigieg",
      "deprecated": false,
      "description": "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.",
      "download.obo": "http://purl.obolibrary.org/obo/ecocore.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ecocore.owl",
      "homepage": "https://github.com/EcologicalSemantics/ecocore",
      "license": "CC-BY",
      "name": "An ontology of core ecological entities",
      "prefix": "ecocore"
    },
    "ols": {
      "description": "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.",
      "download": "http://purl.obolibrary.org/obo/ecocore.owl",
      "homepage": "https://github.com/EcologicalSemantics/ecocore",
      "name": "An ontology of core ecological entities",
      "prefix": "ecocore",
      "version": "2021-02-17",
      "version.iri": "http://purl.obolibrary.org/obo/ecocore/releases/2021-02-17/ecocore.owl"
    },
    "pattern": "^\\d+$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ECOCORE_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ECOCORE"
    }
  },
  "ecocyc": {
    "example": "AICARTRANSIMPCYCLO-CPLX",
    "go": {
      "formatter": "http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=$1",
      "homepage": "http://ecocyc.org/",
      "name": "Encyclopedia of E. coli metabolism",
      "prefix": "EcoCyc"
    },
    "mappings": {
      "go": "EcoCyc",
      "ncbi": "ECOCYC"
    },
    "name": "EcoCyc",
    "ncbi": {
      "example": "sroC",
      "homepage": "https://ecocyc.org/",
      "name": "E. coli database",
      "prefix": "ECOCYC"
    },
    "url": "https://biocyc.org/gene?id=$1"
  },
  "ecogene": {
    "mappings": {
      "miriam": "ecogene",
      "n2t": "ecogene",
      "ncbi": "EcoGene",
      "prefixcommons": "EcoGene"
    },
    "miriam": {
      "deprecated": false,
      "description": "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.",
      "homepage": "http://ecogene.org/",
      "id": "00000163",
      "name": "EcoGene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^EG\\d+$",
      "prefix": "ecogene",
      "provider_url": "http://www.ecogene.org/gene/$1",
      "sampleId": "EG10173"
    },
    "n2t": {
      "description": "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.",
      "example": "EG10173",
      "homepage": "http://ecogene.org/",
      "name": "EcoGene at University of Miami",
      "namespaceEmbeddedInLui": false,
      "pattern": "^EG\\d+$",
      "prefix": "ecogene",
      "provider_url": "http://www.ecogene.org/gene/$1"
    },
    "ncbi": {
      "example": "EG11277",
      "homepage": "http://ecogene.org",
      "name": "Database of Escherichia coli Sequence and Function",
      "prefix": "EcoGene"
    },
    "prefixcommons": {
      "formatter": "http://ecogene.org/gene/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "EcoGene"
    }
  },
  "ecoliwiki": {
    "go": {
      "description": "EcoliHub\\'s subsystem for community annotation of E. coli K-12",
      "homepage": "http://ecoliwiki.net/",
      "name": "EcoliWiki from EcoliHub",
      "prefix": "EcoliWiki"
    },
    "mappings": {
      "go": "EcoliWiki",
      "miriam": "ecoliwiki",
      "n2t": "ecoliwiki",
      "prefixcommons": "ECOLIWIKI"
    },
    "miriam": {
      "deprecated": false,
      "description": "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.",
      "homepage": "http://ecoliwiki.net/colipedia/",
      "id": "00000442",
      "name": "EcoliWiki",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9-]+$",
      "prefix": "ecoliwiki",
      "provider_url": "http://ecoliwiki.net/colipedia/index.php/$1:Gene",
      "sampleId": "aaeA"
    },
    "n2t": {
      "description": "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.",
      "example": "aaeA",
      "homepage": "http://ecoliwiki.net/colipedia/",
      "name": "EcoliWiki at Texas Agrilife Research",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9-]+$",
      "prefix": "ecoliwiki",
      "provider_url": "http://ecoliwiki.net/colipedia/index.php/$1:Gene"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ecoliwiki/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ECOLIWIKI"
    }
  },
  "ecto": {
    "biolink": {
      "formatter": "http://purl.obolibrary.org/obo/ECTO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ECTO"
    },
    "bioportal": {
      "name": "Environmental conditions, treatments and exposures ontology",
      "prefix": "ECTO"
    },
    "example": "0000001",
    "mappings": {
      "biolink": "ECTO",
      "bioportal": "ECTO",
      "obofoundry": "ecto",
      "ols": "ecto"
    },
    "obofoundry": {
      "contact": "annethessen@gmail.com",
      "contact.label": "Anne Thessen",
      "deprecated": false,
      "description": "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).",
      "download.json": "http://purl.obolibrary.org/obo/ecto.json",
      "download.obo": "http://purl.obolibrary.org/obo/ecto.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ecto.owl",
      "homepage": "https://github.com/EnvironmentOntology/environmental-exposure-ontology",
      "license": "CC0",
      "name": "Environmental conditions, treatments and exposures ontology",
      "prefix": "ecto"
    },
    "ols": {
      "description": "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).",
      "download": "http://purl.obolibrary.org/obo/ecto.owl",
      "homepage": "https://github.com/EnvironmentOntology/environmental-exposure-ontology",
      "license": "https://creativecommons.org/publicdomain/zero/1.0/",
      "name": "Environment Exposure Ontology",
      "prefix": "ecto",
      "version": "2021-03-17",
      "version.iri": "http://purl.obolibrary.org/obo/ecto/releases/2021-03-17/ecto.owl"
    },
    "pattern": "^\\d{7}$"
  },
  "ecyano.entity": {
    "mappings": {
      "miriam": "ecyano.entity",
      "n2t": "ecyano.entity",
      "prefixcommons": "ECYANO.ENTITY"
    },
    "miriam": {
      "deprecated": false,
      "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities.",
      "homepage": "http://www.e-cyanobacterium.org/bcs/entity/",
      "id": "00000585",
      "name": "E-cyanobacterium entity",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ecyano.entity",
      "provider_url": "http://e-cyanobacterium.org/bcs/entity/$1/",
      "sampleId": "23"
    },
    "n2t": {
      "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction &#x2014; as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities.",
      "example": "23",
      "homepage": "http://www.e-cyanobacterium.org/bcs/entity/",
      "name": "e-cyanobacterium entity at Masaryk University Brno",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ecyano.entity",
      "provider_url": "http://e-cyanobacterium.org/bcs/entity/$1/"
    },
    "part_of": "ecyano",
    "prefixcommons": {
      "formatter": "http://identifiers.org/ecyano.entity/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ECYANO.ENTITY"
    }
  },
  "ecyano.experiment": {
    "mappings": {
      "miriam": "ecyano.experiment"
    },
    "miriam": {
      "deprecated": false,
      "description": "E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments.",
      "homepage": "https://www.e-cyanobacterium.org/experiments-repository/",
      "id": "00000760",
      "name": "E-cyanobacterium Experimental Data",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ecyano.experiment",
      "provider_url": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1",
      "sampleId": "18"
    },
    "part_of": "ecyano"
  },
  "ecyano.model": {
    "mappings": {
      "miriam": "ecyano.model",
      "n2t": "ecyano.model",
      "prefixcommons": "ECYANO.MODEL"
    },
    "miriam": {
      "deprecated": false,
      "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models.",
      "homepage": "http://e-cyanobacterium.org/models/",
      "id": "00000586",
      "name": "E-cyanobacterium model",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ecyano.model",
      "provider_url": "http://e-cyanobacterium.org/models/model/$1/",
      "sampleId": "26"
    },
    "n2t": {
      "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction &#x2014; as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models.",
      "example": "26",
      "homepage": "http://e-cyanobacterium.org/models/",
      "name": "e-cyanobacterium entity at Masaryk University Brno",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ecyano.model",
      "provider_url": "http://e-cyanobacterium.org/models/model/$1/"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ecyano.model/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ECYANO.MODEL"
    }
  },
  "ecyano.rule": {
    "mappings": {
      "miriam": "ecyano.rule",
      "n2t": "ecyano.rule",
      "prefixcommons": "ECYANO.RULE"
    },
    "miriam": {
      "deprecated": false,
      "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules.",
      "homepage": "http://www.e-cyanobacterium.org/bcs/rule/",
      "id": "00000587",
      "name": "E-cyanobacterium rule",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ecyano.rule",
      "provider_url": "http://e-cyanobacterium.org/bcs/rule/$1/",
      "sampleId": "56"
    },
    "n2t": {
      "description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction &#x2014; as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules.",
      "example": "56",
      "homepage": "http://www.e-cyanobacterium.org/bcs/rule/",
      "name": "e-cyanobacterium entity at Masaryk University Brno",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ecyano.rule",
      "provider_url": "http://e-cyanobacterium.org/bcs/rule/$1/"
    },
    "part_of": "ecyano",
    "prefixcommons": {
      "formatter": "http://identifiers.org/ecyano.rule/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ECYANO.RULE"
    }
  },
  "edam": {
    "bioportal": {
      "name": "EDAM - Bioscientific data analysis ontology",
      "prefix": "EDAM"
    },
    "mappings": {
      "bioportal": "EDAM",
      "miriam": "edam",
      "n2t": "edam",
      "ols": "edam",
      "prefixcommons": "EDAM"
    },
    "miriam": {
      "deprecated": false,
      "description": "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/edam",
      "id": "00000189",
      "name": "EDAM Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(data|topic|operation|format)\\_\\d{4}$",
      "prefix": "edam",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?short_form=$1",
      "sampleId": "data_1664"
    },
    "n2t": {
      "description": "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).",
      "example": "data_1664",
      "homepage": "http://bioportal.bioontology.org/ontologies/EDAM",
      "name": "EDAM through BioPortal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(data|topic|operation|format)\\_\\d{4}$",
      "prefix": "edam",
      "provider_url": "http://purl.bioontology.org/ontology/EDAM/$1"
    },
    "ols": {
      "contact": "edam@elixir-dk.org",
      "description": "EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions - organised into an intuitive hierarchy for convenient use.",
      "download": "https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl",
      "homepage": "http://edamontology.org",
      "name": "Bioinformatics operations, data types, formats, identifiers and topics",
      "prefix": "edam",
      "version": "2019-07-17"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/edam/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "EDAM"
    }
  },
  "efo": {
    "biolink": {
      "formatter": "http://www.ebi.ac.uk/efo/EFO_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "EFO"
    },
    "bioportal": {
      "name": "Experimental Factor Ontology",
      "prefix": "EFO"
    },
    "cellosaurus": {
      "category": "Ontologies",
      "homepage": "https://www.ebi.ac.uk/efo/",
      "name": "Experimental Factor Ontology",
      "prefix": "EFO",
      "url": "https://www.ebi.ac.uk/efo/$1"
    },
    "download_obo": "http://www.ebi.ac.uk/efo/efo.obo",
    "example": "0005147",
    "mappings": {
      "biolink": "EFO",
      "bioportal": "EFO",
      "cellosaurus": "EFO",
      "miriam": "efo",
      "n2t": "efo",
      "ols": "efo",
      "prefixcommons": "EFO"
    },
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    "ols": {
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      "deprecated": false,
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      "deprecated": false,
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      "homepage": "http://genex.hgu.mrc.ac.uk/",
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      "name": "Human Developmental Anatomy Ontology, abstract version 2",
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    "obofoundry": {
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      "description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.",
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    "miriam": {
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      "name": "The Eukaryotic Linear Motif resource for Functional Sites in Proteins",
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      "prefix": "EMAPA"
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    "obofoundry": {
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    "synonyms": [
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      "is_obo": false,
      "prefix": "ENA.EMBL"
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    "synonyms": [
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    "url": "https://www.ebi.ac.uk/ena/browser/view/$1"
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      "name": "Encyclopedia of DNA Elements",
      "prefix": "ENCODE",
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    "homepage": "https://www.encodeproject.org",
    "mappings": {
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      "description": "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.",
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      "description": "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.",
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      "is_obo": false,
      "prefix": "ENCODE"
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    "mappings": {
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      "ols": "enm"
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    "ols": {
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    "mappings": {
      "bioportal": "ERO",
      "obofoundry": "ero",
      "ols": "ero",
      "prefixcommons": "ERO"
    },
    "not_available_as_obo": true,
    "obofoundry": {
      "contact": "Marc_Ciriello@hms.harvard.edu",
      "contact.label": "Marc Ciriello",
      "deprecated": false,
      "description": "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.",
      "download.owl": "http://purl.obolibrary.org/obo/ero.owl",
      "homepage": "https://open.med.harvard.edu/wiki/display/eaglei/Ontology",
      "license": "CC-BY 2.0",
      "name": "eagle-i resource ontology",
      "prefix": "ero"
    },
    "ols": {
      "description": "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.",
      "download": "http://purl.obolibrary.org/obo/ero.owl",
      "homepage": "https://open.med.harvard.edu/wiki/display/eaglei/Ontology",
      "name": "eagle-i resource ontology",
      "prefix": "ero",
      "version": "2016-07-27"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ERO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ERO"
    }
  },
  "erv": {
    "mappings": {
      "miriam": "erv",
      "n2t": "erv",
      "prefixcommons": "ERV"
    },
    "miriam": {
      "deprecated": false,
      "description": "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features.",
      "homepage": "https://herv.img.cas.cz/",
      "id": "00000619",
      "name": "Human Endogenous Retrovirus Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9\\-\\_]+$",
      "prefix": "erv",
      "provider_url": "https://herv.img.cas.cz/s/$1",
      "sampleId": "THE1B"
    },
    "n2t": {
      "description": "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features.",
      "example": "THE1B",
      "homepage": "https://herv.img.cas.cz/",
      "name": "Human Endogenous Retrovirus Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9\\-\\_]+$",
      "prefix": "erv",
      "provider_url": "https://herv.img.cas.cz/s/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/erv/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ERV"
    }
  },
  "eu89h": {
    "mappings": {
      "miriam": "eu89h",
      "n2t": "eu89h",
      "prefixcommons": "EU89H"
    },
    "miriam": {
      "deprecated": false,
      "description": "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union.",
      "homepage": "http://data.jrc.ec.europa.eu/",
      "id": "00000644",
      "name": "JRC Data Catalogue",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z0-9\\-_]+$",
      "prefix": "eu89h",
      "provider_url": "http://data.europa.eu/89h/$1",
      "sampleId": "jrc-eurl-ecvam-chemagora"
    },
    "n2t": {
      "description": "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union.",
      "example": "jrc-eurl-ecvam-chemagora",
      "homepage": "http://data.jrc.ec.europa.eu/",
      "name": "JRC Data Catalogue",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z0-9\\-_]+$",
      "prefix": "eu89h",
      "provider_url": "http://data.europa.eu/89h/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/eu89h/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "EU89H"
    }
  },
  "euclinicaltrials": {
    "mappings": {
      "miriam": "euclinicaltrials",
      "n2t": "euclinicaltrials",
      "prefixcommons": "EUCLINICALTRIALS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population.",
      "homepage": "https://www.clinicaltrialsregister.eu/",
      "id": "00000536",
      "name": "EU Clinical Trials",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{4}\\-\\d{6}\\-\\d{2}$",
      "prefix": "euclinicaltrials",
      "provider_url": "https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1",
      "sampleId": "2008-005144-16"
    },
    "n2t": {
      "description": "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004. It also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population.",
      "example": "2008-005144-16",
      "homepage": "https://www.clinicaltrialsregister.eu/",
      "name": "EU Clinical Trials at  European Medicines Agency",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{4}\\-\\d{6}\\-\\d{2}$",
      "prefix": "euclinicaltrials",
      "provider_url": "https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/euclinicaltrials/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "EUCLINICALTRIALS"
    }
  },
  "eupath": {
    "bioportal": {
      "name": "VEuPathDB Ontology",
      "prefix": "EUPATH"
    },
    "mappings": {
      "bioportal": "EUPATH",
      "obofoundry": "eupath",
      "ols": "eupath",
      "prefixcommons": "EUPATH"
    },
    "obofoundry": {
      "contact": "stoeckrt@pennmedicine.upenn.edu",
      "contact.label": "Chris Stoeckert",
      "deprecated": false,
      "description": "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).",
      "download.owl": "http://purl.obolibrary.org/obo/eupath.owl",
      "homepage": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
      "license": "CC-BY",
      "name": "VEuPathDB ontology",
      "prefix": "eupath"
    },
    "ols": {
      "description": "The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.",
      "download": "http://purl.obolibrary.org/obo/eupath.owl",
      "homepage": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "VEuPathDB Ontology",
      "prefix": "eupath",
      "version": "2021-04-28",
      "version.iri": "http://purl.obolibrary.org/obo/eupath/2021-04-28/eupath.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/EUPATH_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "EUPATH"
    }
  },
  "eurofir": {
    "description": "EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries.",
    "homepage": "https://www.eurofir.org",
    "name": "European Food Information Resource Network"
  },
  "ev": {
    "appears_in": [
      "cl"
    ],
    "mappings": {
      "obofoundry": "ev",
      "prefixcommons": "EV"
    },
    "obofoundry": {
      "contact": "evoc@sanbi.ac.za",
      "contact.label": "eVOC mailing list",
      "deprecated": true,
      "homepage": "http://www.evocontology.org/",
      "name": "eVOC (Expressed Sequence Annotation for Humans)",
      "prefix": "ev"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/EV_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "EV"
    },
    "references": [
      "https://twitter.com/Bgeedb/status/1350124337815281664"
    ]
  },
  "evm": {
    "deprecated": true,
    "name": "eVOC mouse development stage",
    "references": [
      "https://genomebiology.biomedcentral.com/articles/10.1186/gb-2007-8-10-r229"
    ]
  },
  "exac.gene": {
    "mappings": {
      "miriam": "exac.gene",
      "n2t": "exac.gene",
      "prefixcommons": "EXAC.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information.",
      "homepage": "http://exac.broadinstitute.org/",
      "id": "00000548",
      "name": "ExAC Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ENSG\\d{11}$",
      "prefix": "exac.gene",
      "provider_url": "http://exac.broadinstitute.org/gene/$1",
      "sampleId": "ENSG00000169174"
    },
    "n2t": {
      "description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information.",
      "example": "ENSG00000169174",
      "homepage": "http://exac.broadinstitute.org/",
      "name": "ExAC Gene at Exome Aggregation Consortium",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ENSG\\d{11}$",
      "prefix": "exac.gene",
      "provider_url": "http://exac.broadinstitute.org/gene/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/exac.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "EXAC.GENE"
    }
  },
  "exac.transcript": {
    "mappings": {
      "miriam": "exac.transcript",
      "n2t": "exac.transcript",
      "prefixcommons": "EXAC.TRANSCRIPT"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information.",
      "homepage": "http://exac.broadinstitute.org/",
      "id": "00000547",
      "name": "ExAC Transcript",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ENST\\d{11}$",
      "prefix": "exac.transcript",
      "provider_url": "http://exac.broadinstitute.org/transcript/$1",
      "sampleId": "ENST00000407236"
    },
    "n2t": {
      "description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information.",
      "example": "ENST00000407236",
      "homepage": "http://exac.broadinstitute.org/",
      "name": "ExAC Transcript at Exome Aggregation Consortium",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ENST\\d{11}$",
      "prefix": "exac.transcript",
      "provider_url": "http://exac.broadinstitute.org/transcript/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/exac.transcript/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "EXAC.TRANSCRIPT"
    }
  },
  "exac.variant": {
    "mappings": {
      "miriam": "exac.variant",
      "n2t": "exac.variant",
      "prefixcommons": "EXAC.VARIANT"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information.",
      "homepage": "http://exac.broadinstitute.org/",
      "id": "00000541",
      "name": "ExAC Variant",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$",
      "prefix": "exac.variant",
      "provider_url": "http://exac.broadinstitute.org/variant/$1",
      "sampleId": "22-46615880-T-C"
    },
    "n2t": {
      "description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information.",
      "example": "22-46615880-T-C",
      "homepage": "http://exac.broadinstitute.org/",
      "name": "ExAC Variant at Exome Aggregation Consortium",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$",
      "prefix": "exac.variant",
      "provider_url": "http://exac.broadinstitute.org/variant/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/exac.variant/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "EXAC.VARIANT"
    }
  },
  "exo": {
    "biolink": {
      "formatter": "http://purl.obolibrary.org/obo/ExO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ExO"
    },
    "bioportal": {
      "name": "Exposure Ontology",
      "prefix": "EXO"
    },
    "example": "0000078",
    "mappings": {
      "biolink": "ExO",
      "bioportal": "EXO",
      "obofoundry": "exo",
      "ols": "exo",
      "prefixcommons": "EXO"
    },
    "obofoundry": {
      "contact": "cjmattin@ncsu.edu",
      "contact.label": "Carolyn Mattingly",
      "deprecated": false,
      "description": "Vocabularies for describing exposure data to inform understanding of environmental health.",
      "download.obo": "http://purl.obolibrary.org/obo/exo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/exo.owl",
      "homepage": "http://ctdbase.org/help/exposureHelp.jsp",
      "license": "CC BY 4.0",
      "name": "Exposure ontology",
      "preferredPrefix": "ExO",
      "prefix": "exo"
    },
    "ols": {
      "description": "ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics.",
      "download": "http://purl.obolibrary.org/obo/exo.owl",
      "homepage": "http://ctdbase.org/help/exposureHelp.jsp",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Exposure ontology (ExO)",
      "prefix": "exo",
      "version": "2020-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/exo/2.1/exo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/EXO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "EXO"
    },
    "synonyms": [
      "ExO"
    ]
  },
  "facebase": {
    "mappings": {
      "miriam": "facebase",
      "n2t": "facebase",
      "prefixcommons": "FACEBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects.",
      "homepage": "https://www.facebase.org",
      "id": "00000642",
      "name": "FaceBase Data Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^FB\\d{8}$",
      "prefix": "facebase",
      "provider_url": "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1",
      "sampleId": "FB00000917"
    },
    "n2t": {
      "description": "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects.",
      "example": "FB00000917",
      "homepage": "https://www.facebase.org",
      "name": "FaceBase Data Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^FB\\d{8}$",
      "prefix": "facebase",
      "provider_url": "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/facebase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FACEBASE"
    }
  },
  "fairsharing": {
    "mappings": {
      "miriam": "fairsharing",
      "n2t": "fairsharing",
      "prefixcommons": "FAIRSHARING"
    },
    "miriam": {
      "deprecated": false,
      "description": "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies.",
      "homepage": "https://fairsharing.org/",
      "id": "00000364",
      "name": "FAIRsharing",
      "namespaceEmbeddedInLui": false,
      "pattern": "^bsg-[dscp]?\\d{6}$",
      "prefix": "fairsharing",
      "provider_url": "https://fairsharing.org/$1",
      "sampleId": "bsg-000052"
    },
    "n2t": {
      "description": "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies.",
      "example": "bsg-000052",
      "homepage": "https://fairsharing.org/",
      "name": "FAIRSharing at University of Oxford",
      "namespaceEmbeddedInLui": false,
      "pattern": "^bsg-[dscp]?\\d{6}$",
      "prefix": "fairsharing",
      "provider_url": "https://fairsharing.org/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/fairsharing/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FAIRSHARING"
    }
  },
  "faldo": {
    "bioportal": {
      "name": "Feature Annotation Location Description Ontology",
      "prefix": "FALDO"
    },
    "example": "ForwardStrandPosition",
    "homepage": "http://biohackathon.org/resource/faldo",
    "mappings": {
      "bioportal": "FALDO",
      "prefixcommons": "faldo"
    },
    "name": "Feature Annotation Location Description Ontology ",
    "prefixcommons": {
      "formatter": "http://biohackathon.org/resource/faldo#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "faldo"
    },
    "url": "http://biohackathon.org/resource/faldo#$1"
  },
  "fao": {
    "bioportal": {
      "name": "Fungal Gross Anatomy Ontology",
      "prefix": "FAO"
    },
    "example": "0000001",
    "mappings": {
      "bioportal": "FAO",
      "obofoundry": "fao",
      "ols": "fao",
      "prefixcommons": "FAO"
    },
    "obofoundry": {
      "contact": "mah79@cam.ac.uk",
      "contact.label": "Midori Harris",
      "deprecated": false,
      "description": "A structured controlled vocabulary for the anatomy of fungi.",
      "download.obo": "http://purl.obolibrary.org/obo/fao.obo",
      "download.owl": "http://purl.obolibrary.org/obo/fao.owl",
      "homepage": "https://github.com/obophenotype/fungal-anatomy-ontology/",
      "license": "CC-0",
      "name": "Fungal gross anatomy",
      "prefix": "fao"
    },
    "ols": {
      "description": "A structured controlled vocabulary for the anatomy of fungi.",
      "download": "http://purl.obolibrary.org/obo/fao.owl",
      "homepage": "https://github.com/obophenotype/fungal-anatomy-ontology/",
      "name": "Fungal gross anatomy",
      "prefix": "fao",
      "version": "2020-05-07",
      "version.iri": "http://purl.obolibrary.org/obo/fao/releases/2020-05-07/fao.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FAO"
    }
  },
  "fbbi": {
    "bioportal": {
      "name": "Biological Imaging Methods Ontology",
      "prefix": "FBbi"
    },
    "example": "00000268",
    "mappings": {
      "bioportal": "FBbi",
      "obofoundry": "fbbi",
      "ols": "fbbi",
      "prefixcommons": "FBbi"
    },
    "obofoundry": {
      "contact": "dorloff@ncmir.ucsd.edu",
      "contact.label": "David Orloff",
      "deprecated": false,
      "description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.",
      "download.owl": "http://purl.obolibrary.org/obo/fbbi.owl",
      "homepage": "http://cellimagelibrary.org/",
      "license": "CC BY 4.0",
      "name": "Biological Imaging Methods Ontology",
      "preferredPrefix": "FBbi",
      "prefix": "fbbi"
    },
    "ols": {
      "description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.",
      "download": "http://purl.obolibrary.org/obo/fbbi.owl",
      "homepage": "http://cellimagelibrary.org/",
      "name": "Biological Imaging Methods Ontology",
      "prefix": "fbbi",
      "version": "2020-11-06",
      "version.iri": "http://purl.obolibrary.org/obo/fbbi/releases/2020-11-06/fbbi.owl"
    },
    "pattern": "^\\d+$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FBbi_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FBbi"
    },
    "synonyms": [
      "FBbi"
    ]
  },
  "fbbt": {
    "bioportal": {
      "name": "Drosophila Gross Anatomy Ontology",
      "prefix": "FB-BT"
    },
    "example": "00007294",
    "go": {
      "formatter": "http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:$1",
      "homepage": "http://flybase.org/",
      "name": "Drosophila gross anatomy",
      "prefix": "FBbt"
    },
    "mappings": {
      "bioportal": "FB-BT",
      "go": "FBbt",
      "obofoundry": "fbbt",
      "ols": "fbbt",
      "prefixcommons": "FBbt"
    },
    "obofoundry": {
      "contact": "cp390@cam.ac.uk",
      "contact.label": "Clare Pilgrim",
      "deprecated": false,
      "description": "An ontology representing the gross anatomy of Drosophila melanogaster.",
      "download.json": "http://purl.obolibrary.org/obo/fbbt.json",
      "download.obo": "http://purl.obolibrary.org/obo/fbbt.obo",
      "download.owl": "http://purl.obolibrary.org/obo/fbbt.owl",
      "homepage": "http://purl.obolibrary.org/obo/fbbt",
      "license": "CC-BY",
      "name": "Drosophila gross anatomy",
      "preferredPrefix": "FBbt",
      "prefix": "fbbt"
    },
    "ols": {
      "description": "An ontology of Drosophila melanogaster anatomy.",
      "download": "http://purl.obolibrary.org/obo/fbbt.owl",
      "homepage": "http://purl.obolibrary.org/obo/fbbt",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Drosophila Anatomy Ontology (DAO)",
      "prefix": "fbbt",
      "version": "2021-07-09",
      "version.iri": "http://purl.obolibrary.org/obo/fbbt/releases/2021-07-09/fbbt.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FBbt_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FBbt"
    },
    "synonyms": [
      "FBbt_root",
      "FBbt"
    ]
  },
  "fbcv": {
    "bioportal": {
      "name": "FlyBase Controlled Vocabulary",
      "prefix": "FB-CV"
    },
    "download_obo": "https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo",
    "example": "0000586",
    "mappings": {
      "bioportal": "FB-CV",
      "obofoundry": "fbcv",
      "ols": "fbcv",
      "prefixcommons": "FBcv"
    },
    "obofoundry": {
      "contact": "cp390@cam.ac.uk",
      "contact.label": "Clare Pilgrim",
      "deprecated": false,
      "description": "A structured controlled vocabulary used for various aspects of annotation by FlyBase.",
      "download.json": "http://purl.obolibrary.org/obo/fbcv.json",
      "download.obo": "http://purl.obolibrary.org/obo/fbcv.obo",
      "download.owl": "http://purl.obolibrary.org/obo/fbcv.owl",
      "homepage": "http://purl.obolibrary.org/obo/fbcv",
      "license": "CC-BY",
      "name": "FlyBase Controlled Vocabulary",
      "preferredPrefix": "FBcv",
      "prefix": "fbcv"
    },
    "ols": {
      "description": "A miscellaneous ontology of terms used for curation in FlyBase, including the DPO.",
      "download": "http://purl.obolibrary.org/obo/fbcv.owl",
      "homepage": "http://purl.obolibrary.org/obo/fbcv",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "FlyBase Controlled Vocabulary (FBcv)",
      "prefix": "fbcv",
      "version": "2021-07-15",
      "version.iri": "http://purl.obolibrary.org/obo/fbcv/releases/2021-07-15/fbcv.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FBcv_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FBcv"
    },
    "synonyms": [
      "FBcv"
    ]
  },
  "fbdv": {
    "bioportal": {
      "name": "Drosophila Development Ontology",
      "prefix": "FB-DV"
    },
    "example": "00000000",
    "mappings": {
      "bioportal": "FB-DV",
      "obofoundry": "fbdv",
      "ols": "fbdv",
      "prefixcommons": "FBdv"
    },
    "obofoundry": {
      "contact": "cp390@cam.ac.uk",
      "contact.label": "Clare Pilgrim",
      "deprecated": false,
      "description": "A structured controlled vocabulary of the development of Drosophila melanogaster.",
      "download.json": "http://purl.obolibrary.org/obo/fbdv.json",
      "download.obo": "http://purl.obolibrary.org/obo/fbdv.obo",
      "download.owl": "http://purl.obolibrary.org/obo/fbdv.owl",
      "homepage": "http://purl.obolibrary.org/obo/fbdv",
      "license": "CC-BY",
      "name": "Drosophila development",
      "preferredPrefix": "FBdv",
      "prefix": "fbdv"
    },
    "ols": {
      "description": "An ontology of Drosophila melanogaster developmental stages.",
      "download": "http://purl.obolibrary.org/obo/fbdv.owl",
      "homepage": "http://purl.obolibrary.org/obo/fbdv",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "FlyBase Developmental Ontology (FBdv)",
      "prefix": "fbdv",
      "version": "2021-07-05",
      "version.iri": "http://purl.obolibrary.org/obo/fbdv/releases/2021-07-05/fbdv.owl"
    },
    "pattern": "^\\d{8}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FBdv_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FBdv"
    },
    "synonyms": [
      "FBdv"
    ]
  },
  "fbol": {
    "mappings": {
      "miriam": "fbol",
      "n2t": "fbol",
      "ncbi": "FBOL",
      "prefixcommons": "FBOL"
    },
    "miriam": {
      "deprecated": false,
      "description": "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms.",
      "homepage": "http://www.fungalbarcoding.org/",
      "id": "00000410",
      "name": "Fungal Barcode",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "fbol",
      "provider_url": "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T",
      "sampleId": "2224"
    },
    "n2t": {
      "description": "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms.",
      "example": "2224",
      "homepage": "http://www.fungalbarcoding.org/",
      "name": "Fungal Barcode at Fungal Biodiversity Centre",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "fbol",
      "provider_url": "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T"
    },
    "ncbi": {
      "example": "2224",
      "homepage": "http://www.fungalbarcoding.org/",
      "name": "International Fungal Working Group Fungal Barcoding.",
      "prefix": "FBOL"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/fbol/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FBOL"
    }
  },
  "fbql": {
    "name": "Flybase Quantitative Loci",
    "prefixcommons": {
      "prefix": "fbql"
    }
  },
  "fbsp": {
    "bioportal": {
      "name": "Fly Taxonomy",
      "prefix": "FB-SP"
    },
    "mappings": {
      "bioportal": "FB-SP",
      "obofoundry": "fbsp",
      "prefixcommons": "FBSP"
    },
    "obofoundry": {
      "contact": "mmc46@gen.cam.ac.uk",
      "contact.label": "Marta Costa",
      "deprecated": true,
      "description": "The taxonomy of the family <i>Drosophilidae</i> (largely after Baechli) and of other taxa referred to in FlyBase.",
      "download.owl": "http://purl.obolibrary.org/obo/fbsp.owl",
      "homepage": "http://www.flybase.org/",
      "name": "Fly taxonomy",
      "prefix": "fbsp"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FBSP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FBSP"
    }
  },
  "fbtc": {
    "name": "Flybase Cell Line"
  },
  "fideo": {
    "bioportal": {
      "name": "Food Interactions with Drugs Evidence Ontology",
      "prefix": "FIDEO"
    },
    "mappings": {
      "bioportal": "FIDEO",
      "obofoundry": "fideo",
      "ols": "fideo"
    },
    "obofoundry": {
      "contact": "georgeta.bordea@u-bordeaux.fr",
      "contact.label": "Georgeta Bordea",
      "deprecated": false,
      "description": "Food-Drug interactions automatically extracted from scientific literature",
      "download.owl": "http://purl.obolibrary.org/obo/fideo.owl",
      "homepage": "https://gitub.u-bordeaux.fr/erias/fideo",
      "license": "CC0",
      "name": "Food Interactions with Drugs Evidence Ontology",
      "prefix": "fideo"
    },
    "ols": {
      "description": "The Food Interactions with Drugs Evidence Ontology (FIDEO) represents Food-Drug Interactions and underlying interaction mechanisms described in scientific publications, drug and adverse effects databases, and drug interactions compendia. The ontology builds on previous efforts from the FoodOn, DRON, ChEBI, and DIDEO ontologies as well as the Thériaque database. This ontology is maintained at https://gitub.u-bordeaux.fr/erias/fideo, and requests for changes or additions should be filed at the issue tracker there.",
      "download": "http://purl.obolibrary.org/obo/fideo.owl",
      "homepage": "https://gitub.u-bordeaux.fr/erias/fideo",
      "name": "Food Interactions with Drugs Evidence Ontology",
      "prefix": "fideo"
    }
  },
  "fishbase.species": {
    "example": "6472",
    "name": "FishBase",
    "wikidata": {
      "database": "Q837101",
      "prefix": "P938"
    }
  },
  "fix": {
    "bioportal": {
      "name": "Physico-Chemical Methods and Properties",
      "prefix": "FIX"
    },
    "example": "0000390",
    "mappings": {
      "bioportal": "FIX",
      "obofoundry": "fix",
      "ols": "fix",
      "prefixcommons": "FIX"
    },
    "obofoundry": {
      "contact.label": "chEBI",
      "deprecated": false,
      "description": "An ontology of physico-chemical methods and properties.",
      "download.obo": "http://purl.obolibrary.org/obo/fix.obo",
      "download.owl": "http://purl.obolibrary.org/obo/fix.owl",
      "name": "Physico-chemical methods and properties",
      "prefix": "fix"
    },
    "ols": {
      "description": "An ontology of physico-chemical methods and properties.",
      "download": "http://purl.obolibrary.org/obo/fix.owl",
      "name": "Physico-chemical methods and properties",
      "prefix": "fix",
      "version": "2020-04-13",
      "version.iri": "http://purl.obolibrary.org/obo/fix/releases/2020-04-13/fix.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FIX_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FIX"
    }
  },
  "flopo": {
    "bioportal": {
      "name": "Flora Phenotype Ontology",
      "prefix": "FLOPO"
    },
    "mappings": {
      "bioportal": "FLOPO",
      "obofoundry": "flopo",
      "ols": "flopo",
      "prefixcommons": "FLOPO"
    },
    "obofoundry": {
      "contact": "robert.hoehndorf@kaust.edu.sa",
      "contact.label": "Robert Hoehndorf",
      "deprecated": false,
      "description": "Traits and phenotypes of flowering plants occurring in digitized Floras",
      "download.owl": "http://purl.obolibrary.org/obo/flopo.owl",
      "homepage": "https://github.com/flora-phenotype-ontology/flopoontology",
      "license": "CC-0",
      "name": "Flora Phenotype Ontology",
      "prefix": "flopo"
    },
    "ols": {
      "description": "Traits and phenotypes of flowering plants occurring in digitized Floras",
      "download": "http://purl.obolibrary.org/obo/flopo.owl",
      "homepage": "https://github.com/flora-phenotype-ontology/flopoontology",
      "name": "Flora Phenotype Ontology",
      "prefix": "flopo",
      "version": "2019-09-09"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FLOPO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FLOPO"
    }
  },
  "flowrepository": {
    "mappings": {
      "miriam": "flowrepository",
      "n2t": "flowrepository"
    },
    "miriam": {
      "deprecated": false,
      "description": "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field.",
      "homepage": "https://flowrepository.org/",
      "id": "00000672",
      "name": "FlowRepository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^FR\\-FCM\\-\\w{4}$",
      "prefix": "flowrepository",
      "provider_url": "https://flowrepository.org/id/$1",
      "sampleId": "FR-FCM-ZYGW"
    },
    "n2t": {
      "description": "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field.",
      "example": "FR-FCM-ZYGW",
      "homepage": "https://flowrepository.org/",
      "name": "FlowRepository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^FR\\-FCM\\-\\w{4}$",
      "prefix": "flowrepository",
      "provider_url": "https://flowrepository.org/id/$1"
    }
  },
  "flu": {
    "bioportal": {
      "name": "Influenza Ontology",
      "prefix": "FLU"
    },
    "mappings": {
      "bioportal": "FLU",
      "obofoundry": "flu",
      "prefixcommons": "FLU"
    },
    "obofoundry": {
      "contact": "burkesquires@gmail.com",
      "contact.label": "Burke Squires",
      "deprecated": true,
      "download.owl": "http://purl.obolibrary.org/obo/flu.owl",
      "homepage": "http://purl.obolibrary.org/obo/flu/",
      "name": "Influenza Ontology",
      "prefix": "flu"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FLU_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FLU"
    }
  },
  "flybase": {
    "cellosaurus": {
      "category": "Organism-specific databases",
      "homepage": "https://flybase.org",
      "name": "Drosophila genome database",
      "prefix": "FlyBase",
      "url": "https://flybase.org/reports/$1.html"
    },
    "go": {
      "formatter": "http://flybase.org/reports/$1.html",
      "homepage": "http://flybase.org/",
      "name": "FlyBase",
      "prefix": "FB",
      "synonyms": [
        "FlyBase",
        "FLYBASE"
      ]
    },
    "mappings": {
      "cellosaurus": "FlyBase",
      "go": "FB",
      "miriam": "fb",
      "n2t": "fb",
      "ncbi": "FLYBASE",
      "prefixcommons": "FlyBase",
      "uniprot": "FlyBase",
      "uniprot.database": "FlyBase",
      "wikidata": "P3852"
    },
    "miriam": {
      "deprecated": false,
      "description": "FlyBase is the database of the Drosophila Genome Projects and of associated literature.",
      "homepage": "https://www.alliancegenome.org",
      "id": "00000030",
      "name": "FlyBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^FB\\w{2}\\d{7}$",
      "prefix": "fb",
      "provider_url": "https://www.alliancegenome.org/gene/FB:$1",
      "sampleId": "FBgn0011293"
    },
    "n2t": {
      "description": "FlyBase is the database of the Drosophila Genome Projects and of associated literature.",
      "example": "FBgn0011293",
      "homepage": "https://www.alliancegenome.org",
      "name": "FlyBase through the Alliance of Genome Resources",
      "namespaceEmbeddedInLui": false,
      "pattern": "^FB\\w{2}\\d{7}$",
      "prefix": "fb",
      "provider_url": "https://www.alliancegenome.org/gene/FB:$1"
    },
    "ncbi": {
      "example": "FBgn0000024",
      "homepage": "http://www.flybase.org/",
      "name": "Database of Genetic and molecular data of Drosophila.",
      "prefix": "FLYBASE"
    },
    "prefixcommons": {
      "formatter": "http://flybase.org/reports/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "FlyBase"
    },
    "synonyms": [
      "FB",
      "FlyBase"
    ],
    "uniprot": {
      "category": "Organism-specific databases",
      "comment": "Replacement for DMAP",
      "formatter": "http://flybase.org/reports/%s.html",
      "identifier": "26",
      "link_is_explicit": "true",
      "name": "Drosophila genome database",
      "prefix": "FlyBase"
    },
    "wikidata": {
      "database": "Q3074571",
      "database.homepage": "http://flybase.org/",
      "database.label": "FlyBase",
      "format": "http://flybase.org/reports/$1",
      "homepage": "http://flybase.org/",
      "name": "FlyBase Gene ID",
      "pattern": "FBgn\\d{7}",
      "prefix": "P3852"
    }
  },
  "fma": {
    "bioportal": {
      "name": "Foundational Model of Anatomy",
      "prefix": "FMA"
    },
    "example": "63189",
    "go": {
      "homepage": "http://sig.biostr.washington.edu/projects/fm/index.html",
      "name": "Foundational Model of Anatomy",
      "prefix": "FMA"
    },
    "mappings": {
      "bioportal": "FMA",
      "go": "FMA",
      "miriam": "fma",
      "n2t": "fma",
      "obofoundry": "fma",
      "ols": "fma",
      "prefixcommons": "FMA"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body.  Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.",
      "homepage": "http://bioportal.bioontology.org/ontologies/FMA",
      "id": "00000067",
      "name": "FMA",
      "namespaceEmbeddedInLui": true,
      "pattern": "^FMA:\\d+$",
      "prefix": "fma",
      "provider_url": "http://purl.bioontology.org/ontology/FMA_subset/FMA:$1",
      "sampleId": "67112"
    },
    "n2t": {
      "description": "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body.  Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.",
      "example": "67112",
      "homepage": "http://bioportal.bioontology.org/ontologies/FMA",
      "name": "Foundational Model of Anatomy through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^FMA:\\d+$",
      "prefix": "fma",
      "provider_url": "http://purl.bioontology.org/ontology/FMA_subset/FMA:$1"
    },
    "name": "Foundational Model of Anatomy",
    "obofoundry": {
      "contact": "mejino@u.washington.edu",
      "contact.label": "Onard Mejino",
      "deprecated": false,
      "description": "This is currently a slimmed down version of FMA",
      "download.owl": "http://purl.obolibrary.org/obo/fma.owl",
      "homepage": "http://si.washington.edu/projects/fma",
      "license": "CC-BY 3.0",
      "name": "Foundational Model of Anatomy Ontology (subset)",
      "prefix": "fma"
    },
    "ols": {
      "description": "This is currently a slimmed down version of FMA",
      "download": "http://purl.obolibrary.org/obo/fma.owl",
      "homepage": "http://si.washington.edu/projects/fma",
      "name": "Foundational Model of Anatomy Ontology (subset)",
      "prefix": "fma",
      "version": "2020-04-13",
      "version.iri": "http://purl.obolibrary.org/obo/fma/releases/2020-04-13/fma.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FMA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FMA"
    },
    "synonyms": [
      "FMAID",
      "FMA_RETIRED"
    ]
  },
  "foaf": {
    "biolink": {
      "formatter": "http://xmlns.com/foaf/0.1/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "foaf"
    },
    "bioportal": {
      "name": "Friend of a Friend Vocabulary",
      "prefix": "FOAF"
    },
    "mappings": {
      "biolink": "foaf",
      "bioportal": "FOAF",
      "prefixcommons": "foaf"
    },
    "name": "Friend of a Friend",
    "prefixcommons": {
      "formatter": "http://xmlns.com/foaf/0.1/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "foaf"
    },
    "url": "http://xmlns.com/foaf/0.1/$1"
  },
  "fobi": {
    "bioportal": {
      "name": "FOBI (Food-Biomarker Ontology)",
      "prefix": "FOBI"
    },
    "mappings": {
      "bioportal": "FOBI",
      "obofoundry": "fobi",
      "ols": "fobi"
    },
    "name": "Food-Biomarker Ontology",
    "obofoundry": {
      "contact": "polcaes@gmail.com",
      "contact.label": "Pol Castellano Escuder",
      "deprecated": false,
      "description": "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data",
      "download.owl": "http://purl.obolibrary.org/obo/fobi.owl",
      "license": "CC-BY",
      "name": "FOBI",
      "prefix": "fobi"
    },
    "ols": {
      "description": "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data",
      "download": "http://purl.obolibrary.org/obo/fobi.owl",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "FOBI",
      "prefix": "fobi",
      "version.iri": "http://purl.obolibrary.org/obo/fobi/fobi.owl"
    }
  },
  "foodb.compound": {
    "biolink": {
      "formatter": "http://foodb.ca/compounds/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "foodb.compound"
    },
    "homepage": "https://foodb.ca/",
    "mappings": {
      "biolink": "foodb.compound",
      "miriam": "foodb.compound",
      "n2t": "foodb.compound",
      "prefixcommons": "FOODB.COMPOUND"
    },
    "miriam": {
      "deprecated": false,
      "description": "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.",
      "homepage": "http://foodb.ca/foods",
      "id": "00000530",
      "name": "FooDB Compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^FDB\\d+$",
      "prefix": "foodb.compound",
      "provider_url": "http://foodb.ca/compounds/$1",
      "sampleId": "FDB002100"
    },
    "n2t": {
      "description": "FooDB is resource on food and its constituent compounds. It includes data on the compound&#x2019;s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.",
      "example": "FDB002100",
      "homepage": "http://foodb.ca/foods",
      "name": "FooDB database of food additives at University of Alberta",
      "namespaceEmbeddedInLui": false,
      "pattern": "^FDB\\d+$",
      "prefix": "foodb.compound",
      "provider_url": "http://foodb.ca/compounds/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/foodb.compound/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FOODB.COMPOUND"
    },
    "synonyms": [
      "foodb"
    ]
  },
  "foodon": {
    "bioportal": {
      "name": "The FoodOn Food Ontology",
      "prefix": "FOODON"
    },
    "mappings": {
      "bioportal": "FOODON",
      "miriam": "foodon",
      "n2t": "foodon",
      "obofoundry": "foodon",
      "ols": "foodon",
      "prefixcommons": "FOODON"
    },
    "miriam": {
      "deprecated": false,
      "description": "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.",
      "homepage": "https://foodon.org",
      "id": "00000661",
      "name": "FoodOn Food Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^FOODON:[0-9]{8}$",
      "prefix": "foodon",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:$1",
      "sampleId": "03307879"
    },
    "n2t": {
      "description": "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.",
      "example": "03307879",
      "homepage": "https://foodon.org",
      "name": "FoodOn Food Ontology through OLS",
      "namespaceEmbeddedInLui": true,
      "pattern": "^FOODON:[0-9]{8}$",
      "prefix": "foodon",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:$1"
    },
    "name": "The Food Ontology",
    "obofoundry": {
      "contact": "damion_dooley@sfu.ca",
      "contact.label": "Damion Dooley",
      "deprecated": false,
      "description": "A broadly scoped ontology representing entities which bear a “food role”.  It encompasses materials in natural ecosystems and food webs as well as human-centric categorization and handling of food.",
      "download.owl": "http://purl.obolibrary.org/obo/foodon.owl",
      "homepage": "https://foodon.org/",
      "license": "CC-BY",
      "name": "FOODON",
      "prefix": "foodon"
    },
    "ols": {
      "description": "FoodOn (http://foodon.org) is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world.",
      "download": "http://purl.obolibrary.org/obo/foodon.owl",
      "homepage": "https://foodon.org/",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Food Ontology",
      "prefix": "foodon",
      "version": "2021-05-24",
      "version.iri": "http://purl.obolibrary.org/obo/foodon/releases/2021-05-24/foodon.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FOODON_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FOODON"
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  },
  "fovt": {
    "bioportal": {
      "name": "FuTRES Ontology of Vertebrate Traits",
      "prefix": "FOVT"
    },
    "mappings": {
      "bioportal": "FOVT",
      "obofoundry": "fovt",
      "ols": "fovt"
    },
    "obofoundry": {
      "contact": "rlwalls2008@gmail.com",
      "contact.label": "FuTRES Ontology of Vertebrate Traits",
      "deprecated": false,
      "description": "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA).",
      "download.obo": "http://purl.obolibrary.org/obo/fovt.obo",
      "download.owl": "http://purl.obolibrary.org/obo/fovt.owl",
      "homepage": "https://github.com/futres/fovt",
      "license": "CC0",
      "name": "FuTRES Ontology of Vertebrate Traits",
      "prefix": "fovt"
    },
    "ols": {
      "description": "None",
      "download": "http://purl.obolibrary.org/obo/fovt.owl",
      "homepage": "https://github.com/futres/fovt",
      "license": "http://creativecommons.org/publicdomain/zero/1.0/",
      "name": "FuTRES Ontology of Vertebrate Traits",
      "prefix": "fovt",
      "version": "2021-06-02",
      "version.iri": "http://purl.obolibrary.org/obo/fovt/releases/2021-06-02/fovt.owl"
    }
  },
  "fplx": {
    "bioportal": {
      "name": "FamPlex",
      "prefix": "FPLX"
    },
    "example": "GPIb_IX_V",
    "homepage": "https://sorgerlab.github.io/famplex/",
    "mappings": {
      "bioportal": "FPLX",
      "miriam": "fplx",
      "n2t": "fplx",
      "prefixcommons": "FPLX"
    },
    "miriam": {
      "deprecated": false,
      "description": "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.",
      "homepage": "https://sorgerlab.github.io/famplex",
      "id": "00000651",
      "name": "FamPlex",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-zA-Z0-9][A-Za-z0-9_]+$",
      "prefix": "fplx",
      "provider_url": "https://sorgerlab.github.io/famplex/$1",
      "sampleId": "RAS"
    },
    "n2t": {
      "description": "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.",
      "example": "RAS",
      "homepage": "http://bioportal.bioontology.org/ontologies/FPLX/",
      "name": "FPLX through BioPortal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-zA-Z0-9][A-Za-z0-9_]+$",
      "prefix": "fplx",
      "provider_url": "http://bioportal.bioontology.org/ontologies/FPLX/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFPLX%23_$1"
    },
    "name": "FamPlex",
    "prefixcommons": {
      "formatter": "http://identifiers.org/fplx/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FPLX"
    },
    "synonyms": [
      "famplex"
    ],
    "url": "https://sorgerlab.github.io/famplex/$1",
    "wikidata": {
      "paper": "Q55505864"
    }
  },
  "fsnp": {
    "mappings": {
      "miriam": "fsnp",
      "n2t": "fsnp",
      "prefixcommons": "FSNP"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.",
      "homepage": "http://compbio.cs.queensu.ca/F-SNP/",
      "id": "00000496",
      "name": "F-SNP",
      "namespaceEmbeddedInLui": false,
      "pattern": "^rs\\d+$",
      "prefix": "fsnp",
      "provider_url": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=$1",
      "sampleId": "rs17852708"
    },
    "n2t": {
      "description": "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.",
      "example": "rs17852708",
      "homepage": "http://compbio.cs.queensu.ca/F-SNP/",
      "name": "F-SNP at Queen's University (Canada)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^rs\\d+$",
      "prefix": "fsnp",
      "provider_url": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/fsnp/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FSNP"
    }
  },
  "funcbase.fly": {
    "mappings": {
      "miriam": "funcbase.fly",
      "n2t": "funcbase.fly",
      "prefixcommons": "FUNCBASE.FLY"
    },
    "miriam": {
      "deprecated": false,
      "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.",
      "homepage": "http://func.mshri.on.ca/fly",
      "id": "00000461",
      "name": "FuncBase Fly",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "funcbase.fly",
      "provider_url": "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1",
      "sampleId": "10194"
    },
    "n2t": {
      "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.",
      "example": "10194",
      "homepage": "http://func.mshri.on.ca/fly",
      "name": "FuncBase Fly at Harvard Medical School",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "funcbase.fly",
      "provider_url": "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/funcbase.fly/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FUNCBASE.FLY"
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  },
  "funcbase.human": {
    "mappings": {
      "miriam": "funcbase.human",
      "n2t": "funcbase.human",
      "prefixcommons": "FUNCBASE.HUMAN"
    },
    "miriam": {
      "deprecated": false,
      "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.",
      "homepage": "http://func.mshri.on.ca/human/",
      "id": "00000462",
      "name": "FuncBase Human",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "funcbase.human",
      "provider_url": "http://func.mshri.on.ca/human/genes/list_functional_scores/$1",
      "sampleId": "119514"
    },
    "n2t": {
      "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.",
      "example": "119514",
      "homepage": "http://func.mshri.on.ca/human/",
      "name": "FuncBase Human at Harvard Medical School",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "funcbase.human",
      "provider_url": "http://func.mshri.on.ca/human/genes/list_functional_scores/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/funcbase.human/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FUNCBASE.HUMAN"
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  },
  "funcbase.mouse": {
    "mappings": {
      "miriam": "funcbase.mouse",
      "n2t": "funcbase.mouse",
      "prefixcommons": "FUNCBASE.MOUSE"
    },
    "miriam": {
      "deprecated": false,
      "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.",
      "homepage": "http://func.mshri.on.ca/mouse/",
      "id": "00000463",
      "name": "FuncBase Mouse",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "funcbase.mouse",
      "provider_url": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1",
      "sampleId": "1351341"
    },
    "n2t": {
      "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.",
      "example": "1351341",
      "homepage": "http://func.mshri.on.ca/mouse/",
      "name": "FuncBase Mouse at Harvard Medical School",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "funcbase.mouse",
      "provider_url": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/funcbase.mouse/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FUNCBASE.MOUSE"
    }
  },
  "funcbase.yeast": {
    "mappings": {
      "miriam": "funcbase.yeast",
      "n2t": "funcbase.yeast",
      "prefixcommons": "FUNCBASE.YEAST"
    },
    "miriam": {
      "deprecated": false,
      "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.",
      "homepage": "http://func.mshri.on.ca/yeast",
      "id": "00000464",
      "name": "FuncBase Yeast",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "funcbase.yeast",
      "provider_url": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1",
      "sampleId": "2701"
    },
    "n2t": {
      "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.",
      "example": "2701",
      "homepage": "http://func.mshri.on.ca/yeast",
      "name": "FuncBase Yeast at Harvard Medical School",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "funcbase.yeast",
      "provider_url": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/funcbase.yeast/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FUNCBASE.YEAST"
    }
  },
  "fungidb": {
    "mappings": {
      "miriam": "fungidb",
      "n2t": "fungidb",
      "prefixcommons": "FUNGIDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.",
      "homepage": "https://fungidb.org/fungidb",
      "id": "00000365",
      "name": "FungiDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z_0-9]+$",
      "prefix": "fungidb",
      "provider_url": "https://fungidb.org/fungidb/app/record/gene/$1",
      "sampleId": "CNBG_0001"
    },
    "n2t": {
      "description": "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.",
      "example": "CNBG_0001",
      "homepage": "https://fungidb.org/fungidb",
      "name": "FungiDB at University of California",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z_0-9]+$",
      "prefix": "fungidb",
      "provider_url": "https://fungidb.org/fungidb/app/record/gene/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/fungidb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "FUNGIDB"
    }
  },
  "fyler": {
    "name": "Fyler"
  },
  "fypo": {
    "bioportal": {
      "name": "Fission Yeast Phenotype Ontology",
      "prefix": "FYPO"
    },
    "download_obo": "http://purl.obolibrary.org/obo/fypo.obo",
    "example": "0001707",
    "go": {
      "homepage": "http://www.pombase.org/",
      "name": "Fission Yeast Phenotype Ontology",
      "prefix": "FYPO"
    },
    "mappings": {
      "bioportal": "FYPO",
      "go": "FYPO",
      "obofoundry": "fypo",
      "ols": "fypo",
      "prefixcommons": "FYPO"
    },
    "name": "Fission Yeast Phenotype Ontology",
    "obofoundry": {
      "contact": "mah79@cam.ac.uk",
      "contact.label": "Midori Harris",
      "deprecated": false,
      "description": "FYPO is a formal ontology of phenotypes observed in fission yeast.",
      "download.obo": "http://purl.obolibrary.org/obo/fypo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/fypo.owl",
      "homepage": "https://github.com/pombase/fypo",
      "license": "CC-BY",
      "name": "Fission Yeast Phenotype Ontology",
      "prefix": "fypo"
    },
    "ols": {
      "description": "A formal ontology of phenotypes observed in fission yeast.",
      "download": "http://purl.obolibrary.org/obo/fypo.owl",
      "homepage": "https://github.com/pombase/fypo",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Fission Yeast Phenotype Ontology (FYPO)",
      "prefix": "fypo",
      "version": "2021-07-21",
      "version.iri": "http://purl.obolibrary.org/obo/fypo/releases/2021-07-21/fypo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/FYPO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "FYPO"
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  },
  "ga4ghdos": {
    "mappings": {
      "miriam": "ga4ghdos",
      "n2t": "ga4ghdos",
      "prefixcommons": "GA4GHDOS"
    },
    "miriam": {
      "deprecated": false,
      "description": "Assists in resolving data across cloud resources.",
      "homepage": "http://github.com/ga4gh/data-object-service-schemas",
      "id": "00000671",
      "name": "Data Object Service",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-zA-Z0-9\\-:#/\\.]+$",
      "prefix": "ga4ghdos",
      "provider_url": "https://dataguids.org/ga4gh/dos/v1/dataobjects/$1",
      "sampleId": "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d"
    },
    "n2t": {
      "description": "Assists in resolving data across cloud resources.",
      "example": "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d",
      "homepage": "http://github.com/ga4gh/data-object-service-schemas",
      "name": "Data Object Service",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-zA-Z0-9\\-:#/\\.]+$",
      "prefix": "ga4ghdos",
      "provider_url": "https://dataguids.org/ga4gh/dos/v1/dataobjects/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ga4ghdos/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GA4GHDOS"
    }
  },
  "gabi": {
    "mappings": {
      "miriam": "gabi",
      "n2t": "gabi",
      "ncbi": "GABI",
      "prefixcommons": "GABI"
    },
    "miriam": {
      "deprecated": false,
      "description": "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.",
      "homepage": "http://www.gabipd.org/",
      "id": "00000164",
      "name": "GABI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "gabi",
      "provider_url": "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject",
      "sampleId": "2679240"
    },
    "n2t": {
      "description": "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.",
      "example": "2679240",
      "homepage": "http://www.gabipd.org/",
      "name": "GABI at Max Planck",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "gabi",
      "provider_url": "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject"
    },
    "ncbi": {
      "example": "HA05J18",
      "homepage": "http://www.gabipd.org/information/about.shtml",
      "name": "Network of Different Plant Genomic Research Projects",
      "prefix": "GABI"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gabi/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GABI"
    }
  },
  "galen": {
    "bioportal": {
      "name": "Galen Ontology",
      "prefix": "GALEN"
    },
    "mappings": {
      "bioportal": "GALEN"
    },
    "name": "Galen Ontology"
  },
  "gard": {
    "example": "6038",
    "name": "Genetic and Rare Diseases Information Center",
    "synonyms": [
      "GARD",
      "Genetic and Rare Diseases Information Center"
    ],
    "wikidata": {
      "prefix": "P4317"
    }
  },
  "gateway": {
    "mappings": {
      "miriam": "gateway"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access.",
      "homepage": "https://www.hdruk.ac.uk",
      "id": "00000796",
      "name": "gateway",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$",
      "prefix": "gateway",
      "provider_url": "https://web.www.healthdatagateway.org/dataset/$1",
      "sampleId": "fd8d0743-344a-4758-bb97-f8ad84a37357"
    },
    "name": "Health Data Research Innovation Gateway"
  },
  "gaz": {
    "bioportal": {
      "name": "Gazetteer",
      "prefix": "GAZ"
    },
    "download_obo": "http://purl.obolibrary.org/obo/gaz.obo",
    "example": "00620027",
    "mappings": {
      "bioportal": "GAZ",
      "obofoundry": "gaz",
      "ols": "gaz",
      "prefixcommons": "GAZ"
    },
    "obofoundry": {
      "contact": "lschriml@som.umaryland.edu",
      "contact.label": "Lynn Schriml",
      "deprecated": false,
      "description": "A gazetteer constructed on ontological principles",
      "download.obo": "http://purl.obolibrary.org/obo/gaz.obo",
      "download.owl": "http://purl.obolibrary.org/obo/gaz.owl",
      "homepage": "http://environmentontology.github.io/gaz/",
      "license": "CC0 1.0 Universal",
      "name": "Gazetteer",
      "prefix": "gaz"
    },
    "ols": {
      "description": "A gazetteer constructed on ontological principles",
      "download": "http://purl.obolibrary.org/obo/gaz.obo",
      "homepage": "http://environmentontology.github.io/gaz/",
      "name": "Gazetteer",
      "prefix": "gaz",
      "version": "2018-06-26"
    },
    "pattern": "^\\d{8}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/GAZ_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "GAZ"
    },
    "wikidata": {
      "prefix": "P6778"
    }
  },
  "gbif": {
    "example": "4238",
    "name": "Global Biodiversity Information Facility",
    "url": "https://www.gbif.org/species/$1",
    "wikidata": {
      "prefix": "P846"
    }
  },
  "gc": {
    "comment": "see comment here: https://github.com/obophenotype/ncbitaxon/issues/47",
    "name": "Genetic Code",
    "references": [
      "https://github.com/obophenotype/ncbitaxon/issues/47"
    ],
    "synonyms": [
      "gc_id"
    ],
    "url": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1"
  },
  "gcst": {
    "mappings": {
      "miriam": "gcst",
      "n2t": "gcst"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide.",
      "homepage": "https://www.ebi.ac.uk",
      "id": "00000715",
      "name": "GWAS Catalog",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GCST\\d{6}\\d*$",
      "prefix": "gcst",
      "provider_url": "https://www.ebi.ac.uk/gwas/studies/$1",
      "sampleId": "GCST000035"
    },
    "n2t": {
      "description": "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide.",
      "example": "GCST000035",
      "homepage": "https://www.ebi.ac.uk/gwas/studies",
      "name": "GWAS Catalog",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GCST\\d{6}$",
      "prefix": "gcst",
      "provider_url": "https://www.ebi.ac.uk/gwas/studies/$1"
    }
  },
  "gdc": {
    "mappings": {
      "miriam": "gdc",
      "n2t": "gdc",
      "prefixcommons": "GDC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.",
      "homepage": "https://gdc.cancer.gov",
      "id": "00000604",
      "name": "Genomic Data Commons Data Portal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$",
      "prefix": "gdc",
      "provider_url": "https://portal.gdc.cancer.gov/cases/$1",
      "sampleId": "ae8c77fe-e6c8-44d5-8265-4a38c637bbef"
    },
    "n2t": {
      "description": "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.",
      "example": "ae8c77fe-e6c8-44d5-8265-4a38c637bbef",
      "homepage": "https://gdc.cancer.gov",
      "name": "Genomic Data Commons",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$",
      "prefix": "gdc",
      "provider_url": "https://portal.gdc.cancer.gov/cases/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gdc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GDC"
    }
  },
  "gdsc": {
    "cellosaurus": {
      "category": "Chemistry resources",
      "homepage": "https://www.cancerrxgene.org",
      "name": "Genomics of Drug Sensitivity in Cancer Project",
      "prefix": "GDSC",
      "url": "https://www.cancerrxgene.org/translation/CellLine/$1"
    },
    "mappings": {
      "cellosaurus": "GDSC",
      "miriam": "gdsc",
      "n2t": "gdsc"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies.",
      "homepage": "https://www.cancerrxgene.org",
      "id": "00000678",
      "name": "Genomics of Drug Sensitivity in Cancer",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "gdsc",
      "provider_url": "https://www.cancerrxgene.org/translation/Drug/$1",
      "sampleId": "1242"
    },
    "n2t": {
      "description": "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies.",
      "example": "1242",
      "homepage": "https://www.cancerrxgene.org",
      "name": "Genomics of Drug Sensitivity in Cancer",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "gdsc",
      "provider_url": "https://www.cancerrxgene.org/translation/Drug/$1"
    }
  },
  "gecko": {
    "bioportal": {
      "name": "Genomics Cohorts Knowledge Ontology",
      "prefix": "GECKO"
    },
    "mappings": {
      "bioportal": "GECKO",
      "obofoundry": "gecko",
      "ols": "gecko"
    },
    "obofoundry": {
      "contact": "rbca.jackson@gmail.com",
      "contact.label": "Rebecca Jackson",
      "deprecated": false,
      "description": "An ontology to represent genomics cohort attributes",
      "download.owl": "http://purl.obolibrary.org/obo/gecko.owl",
      "homepage": "https://github.com/IHCC-cohorts/GECKO",
      "license": "CC-BY 4.0",
      "name": "Genomics Cohorts Knowledge Ontology",
      "prefix": "gecko"
    },
    "ols": {
      "description": "An ontology to represent genomics cohort attributes.",
      "download": "http://purl.obolibrary.org/obo/gecko.owl",
      "homepage": "https://github.com/IHCC-cohorts/GECKO",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Genomics Cohorts Knowledge Ontology",
      "prefix": "gecko",
      "version": "2021-01-18",
      "version.iri": "http://purl.obolibrary.org/obo/gecko/releases/2021-01-18/gecko.owl"
    }
  },
  "genatlas": {
    "mappings": {
      "miriam": "genatlas",
      "n2t": "genatlas",
      "prefixcommons": "GENATLAS",
      "uniprot": "GenAtlas",
      "uniprot.database": "GenAtlas"
    },
    "miriam": {
      "deprecated": false,
      "description": "GenAtlas is a database containing information on human genes, markers and phenotypes.",
      "homepage": "http://genatlas.medecine.univ-paris5.fr/",
      "id": "00000208",
      "name": "Genatlas",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "genatlas",
      "provider_url": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1",
      "sampleId": "HBB"
    },
    "n2t": {
      "description": "GenAtlas is a database containing information on human genes, markers and phenotypes.",
      "example": "HBB",
      "homepage": "http://genatlas.medecine.univ-paris5.fr/",
      "name": "Genatlas at Paris Descartes University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "genatlas",
      "provider_url": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/genatlas/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GENATLAS"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=%s",
      "identifier": "27",
      "name": "GenAtlas: human gene database",
      "prefix": "GenAtlas"
    }
  },
  "genbank": {
    "example": "U49845",
    "go": {
      "description": "The NIH genetic sequence database, an annotated collection of all publicly available DNA sequences.",
      "homepage": "http://www.ncbi.nlm.nih.gov/Genbank/",
      "name": "GenBank",
      "prefix": "GenBank",
      "synonyms": [
        "GB"
      ]
    },
    "homepage": "https://www.ncbi.nlm.nih.gov/genbank/",
    "mappings": {
      "fairsharing": "FAIRsharing.9kahy4",
      "go": "GenBank",
      "prefixcommons": "GenBank",
      "uniprot": "GenBank",
      "uniprot.database": "GenBank"
    },
    "name": "GenBank",
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/nuccore/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "GenBank"
    },
    "uniprot": {
      "category": "Sequence databases",
      "formatter": "https://www.ncbi.nlm.nih.gov/nuccore/%s",
      "identifier": "28",
      "name": "GenBank nucleotide sequence database",
      "prefix": "GenBank"
    },
    "url": "https://www.ncbi.nlm.nih.gov/nucleotide/$1"
  },
  "genecards": {
    "mappings": {
      "miriam": "genecards",
      "n2t": "genecards",
      "prefixcommons": "GENECARDS",
      "uniprot": "GeneCards",
      "uniprot.database": "GeneCards"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.",
      "homepage": "http://www.genecards.org/",
      "id": "00000323",
      "name": "GeneCards",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z-0-9_]+(\\@)?$",
      "prefix": "genecards",
      "provider_url": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1",
      "sampleId": "ABL1"
    },
    "n2t": {
      "description": "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.",
      "example": "ABL1",
      "homepage": "http://www.genecards.org/",
      "name": "GeneCards at Weizmann Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z-0-9_]+(\\@)?$",
      "prefix": "genecards",
      "provider_url": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/genecards/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GENECARDS"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=%s",
      "identifier": "30",
      "link_is_explicit": "true",
      "name": "GeneCards: human genes, protein and diseases",
      "prefix": "GeneCards"
    }
  },
  "genedb": {
    "go": {
      "formatter": "http://www.genedb.org/gene/$1",
      "homepage": "http://www.genedb.org/gene/",
      "name": "GeneDB",
      "prefix": "GeneDB"
    },
    "mappings": {
      "go": "GeneDB",
      "miriam": "genedb",
      "n2t": "genedb",
      "ncbi": "GeneDB",
      "prefixcommons": "GENEDB",
      "uniprot": "GeneDB",
      "uniprot.database": "GeneDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.",
      "homepage": "https://www.genedb.org/",
      "id": "00000106",
      "name": "GeneDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[\\w\\d\\.-]*$",
      "prefix": "genedb",
      "provider_url": "https://www.genedb.org/gene/$1",
      "sampleId": "LinJ.20.0070"
    },
    "n2t": {
      "description": "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.",
      "example": "LinJ.20.0070",
      "homepage": "https://www.genedb.org/",
      "name": "GeneDB at Sanger Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[\\w\\d\\.-]*$",
      "prefix": "genedb",
      "provider_url": "https://www.genedb.org/gene/$1"
    },
    "ncbi": {
      "example": "SPCC285.16c",
      "homepage": "http://www.genedb.org/",
      "name": "Curated gene database for Leishmania major and Trypanosoma brucei",
      "prefix": "GeneDB"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/genedb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GENEDB"
    },
    "uniprot": {
      "category": "Genome annotation databases",
      "formatter": "https://www.genedb.org/gene/%s",
      "identifier": "199",
      "link_is_explicit": "true",
      "name": "GeneDB pathogen genome database from Sanger Institute",
      "prefix": "GeneDB"
    }
  },
  "genefarm": {
    "mappings": {
      "miriam": "genefarm",
      "n2t": "genefarm",
      "prefixcommons": "GENEFARM"
    },
    "miriam": {
      "deprecated": false,
      "description": "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.",
      "homepage": "http://urgi.versailles.inra.fr/Genefarm/",
      "id": "00000211",
      "name": "GeneFarm",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "genefarm",
      "provider_url": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1",
      "sampleId": "4892"
    },
    "n2t": {
      "description": "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.",
      "example": "4892",
      "homepage": "http://urgi.versailles.inra.fr/Genefarm/",
      "name": "GeneFarm at Unit&#xE9; de Recherche en G&#xE9;nomique V&#xE9;g&#xE9;tale",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "genefarm",
      "provider_url": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/genefarm/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GENEFARM"
    }
  },
  "genepio": {
    "mappings": {
      "obofoundry": "genepio",
      "ols": "genepio",
      "prefixcommons": "GENEPIO"
    },
    "obofoundry": {
      "contact": "damion_dooley@sfu.ca",
      "contact.label": "Damion Dooley",
      "deprecated": false,
      "description": "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.",
      "download.owl": "http://purl.obolibrary.org/obo/genepio.owl",
      "homepage": "http://genepio.org/",
      "license": "CC-BY",
      "name": "Genomic Epidemiology Ontology",
      "prefix": "genepio"
    },
    "ols": {
      "description": "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.",
      "download": "http://purl.obolibrary.org/obo/genepio.owl",
      "homepage": "http://genepio.org/",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "Genomic Epidemiology Ontology",
      "prefix": "genepio",
      "version": "2021-05-24",
      "version.iri": "http://purl.obolibrary.org/obo/genepio/releases/2021-05-24/genepio.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/GENEPIO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "GENEPIO"
    }
  },
  "genetree": {
    "mappings": {
      "miriam": "genetree",
      "n2t": "genetree",
      "prefixcommons": "GENETREE",
      "uniprot": "GeneTree",
      "uniprot.database": "GeneTree"
    },
    "miriam": {
      "deprecated": false,
      "description": "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.",
      "homepage": "http://www.ensembl.org/",
      "id": "00000214",
      "name": "GeneTree",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ENSGT\\d+$",
      "prefix": "genetree",
      "provider_url": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1",
      "sampleId": "ENSGT00550000074763"
    },
    "n2t": {
      "description": "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.",
      "example": "ENSGT00550000074763",
      "homepage": "http://www.ensembl.org/",
      "name": "GeneTree at Ensembl",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ENSGT\\d+$",
      "prefix": "genetree",
      "provider_url": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/genetree/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GENETREE"
    },
    "uniprot": {
      "category": "Phylogenomic databases",
      "formatter": "http://www.ensemblgenomes.org/id-genetree/%s",
      "identifier": "162",
      "link_is_explicit": "true",
      "name": "Ensembl GeneTree",
      "prefix": "GeneTree"
    }
  },
  "genewiki": {
    "mappings": {
      "miriam": "genewiki",
      "n2t": "genewiki",
      "prefixcommons": "GENEWIKI",
      "uniprot": "GeneWiki",
      "uniprot.database": "GeneWiki"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI.",
      "homepage": "http://en.wikipedia.org/wiki/Gene_Wiki",
      "id": "00000487",
      "name": "Gene Wiki",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "genewiki",
      "provider_url": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1",
      "sampleId": "1017"
    },
    "n2t": {
      "description": "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI.",
      "example": "1017",
      "homepage": "http://en.wikipedia.org/wiki/Gene_Wiki",
      "name": "Gene Wiki through BioGPS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "genewiki",
      "provider_url": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/genewiki/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GENEWIKI"
    },
    "uniprot": {
      "category": "Miscellaneous databases",
      "formatter": "https://en.wikipedia.org/wiki/%s",
      "identifier": "180",
      "link_is_explicit": "true",
      "name": "The Gene Wiki collection of pages on human genes and proteins",
      "prefix": "GeneWiki"
    }
  },
  "geno": {
    "bioportal": {
      "name": "Genotype Ontology",
      "prefix": "GENO"
    },
    "download_obo": "https://raw.githubusercontent.com/monarch-initiative/GENO-ontology/develop/geno-full.obo",
    "example": "0000632",
    "mappings": {
      "bioportal": "GENO",
      "obofoundry": "geno",
      "ols": "geno",
      "prefixcommons": "GENO"
    },
    "obofoundry": {
      "contact": "mhb120@gmail.com",
      "contact.label": "Matthew Brush",
      "deprecated": false,
      "description": "An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases.",
      "download.owl": "http://purl.obolibrary.org/obo/geno.owl",
      "homepage": "https://github.com/monarch-initiative/GENO-ontology/",
      "license": "CC-BY-SA",
      "name": "Genotype Ontology",
      "prefix": "geno"
    },
    "ols": {
      "description": "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities.  At present many parts of the model are exploratory and set to undergo refactoring.  In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc).  Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013",
      "download": "http://purl.obolibrary.org/obo/geno.owl",
      "homepage": "https://github.com/monarch-initiative/GENO-ontology/",
      "name": "GENO ontology",
      "prefix": "geno",
      "version": "2020-03-08",
      "version.iri": "http://purl.obolibrary.org/obo/geno/releases/2020-03-08/geno.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/GENO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "GENO"
    }
  },
  "genpept": {
    "mappings": {
      "miriam": "genpept",
      "n2t": "genpept",
      "prefixcommons": "GENPEPT"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.",
      "homepage": "https://www.ncbi.nlm.nih.gov/protein",
      "id": "00000345",
      "name": "GenPept",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{3}\\d{5}(\\.\\d+)?$",
      "prefix": "genpept",
      "provider_url": "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept",
      "sampleId": "CAA71118.1"
    },
    "n2t": {
      "description": "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.",
      "example": "CAA71118.1",
      "homepage": "https://www.ncbi.nlm.nih.gov/protein",
      "name": "GenPept at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{3}\\d{5}(\\.\\d+)?$",
      "prefix": "genpept",
      "provider_url": "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/genpept/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GENPEPT"
    }
  },
  "genprop": {
    "mappings": {
      "miriam": "genprop",
      "n2t": "genprop",
      "prefixcommons": "GENPROP"
    },
    "miriam": {
      "deprecated": false,
      "description": "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.",
      "homepage": "https://www.ebi.ac.uk/interpro/genomeproperties/",
      "id": "00000443",
      "name": "Genome Properties",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GenProp\\d+$",
      "prefix": "genprop",
      "provider_url": "https://www.ebi.ac.uk/interpro/genomeproperties/#$1",
      "sampleId": "GenProp0699"
    },
    "n2t": {
      "description": "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.",
      "example": "GenProp0699",
      "homepage": "https://www.ebi.ac.uk/interpro/genomeproperties/",
      "name": "Genome Properties",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GenProp\\d+$",
      "prefix": "genprop",
      "provider_url": "https://www.ebi.ac.uk/interpro/genomeproperties/#$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/genprop/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GENPROP"
    }
  },
  "geo": {
    "cellosaurus": {
      "category": "Gene expression databases",
      "homepage": "https://www.ncbi.nlm.nih.gov/geo/",
      "name": "Gene Expression Omnibus",
      "prefix": "GEO",
      "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1"
    },
    "go": {
      "formatter": "http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=$1",
      "homepage": "http://www.ncbi.nlm.nih.gov/geo/",
      "name": "NCBI Gene Expression Omnibus",
      "prefix": "GEO"
    },
    "mappings": {
      "cellosaurus": "GEO",
      "fairsharing": "FAIRsharing.5hc8vt",
      "go": "GEO",
      "miriam": "geo",
      "n2t": "geo",
      "prefixcommons": "GEO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.",
      "homepage": "https://www.ncbi.nlm.nih.gov/geo/",
      "id": "00000054",
      "name": "GEO",
      "namespaceEmbeddedInLui": false,
      "pattern": "^G(PL|SM|SE|DS)\\d+$",
      "prefix": "geo",
      "provider_url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1",
      "sampleId": "GDS1234"
    },
    "n2t": {
      "description": "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.",
      "example": "GDS1234",
      "homepage": "https://www.ncbi.nlm.nih.gov/geo/",
      "name": "Gene Expression Omnibus at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^G(PL|SM|SE|DS)\\d+$",
      "prefix": "geo",
      "provider_url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/GEO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "GEO"
    }
  },
  "geogeo": {
    "bioportal": {
      "name": "Geographical Entity Ontology",
      "prefix": "GEO"
    },
    "mappings": {
      "bioportal": "GEO",
      "miriam": "geogeo",
      "obofoundry": "geo",
      "ols": "geo",
      "prefixcommons": "GEO"
    },
    "miriam": {
      "deprecated": false,
      "description": "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction.  We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\".",
      "homepage": "https://github.com/ufbmi",
      "id": "00000824",
      "name": "Geographical Entity Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GEO_[0-9]{9}$",
      "prefix": "geogeo",
      "provider_url": "http://purl.obolibrary.org/obo/$1",
      "sampleId": "GEO_000000021"
    },
    "not_available_as_obo": true,
    "obofoundry": {
      "contact": "hoganwr@gmail.com",
      "contact.label": "Bill Hogan",
      "deprecated": false,
      "description": "An ontology of geographical entities",
      "download.owl": "http://purl.obolibrary.org/obo/geo.owl",
      "homepage": "https://github.com/ufbmi/geographical-entity-ontology/wiki",
      "license": "CC-BY 4.0",
      "name": "Geographical Entity Ontology",
      "prefix": "geo"
    },
    "ols": {
      "description": "An ontology of geographical entities",
      "download": "http://purl.obolibrary.org/obo/geo.owl",
      "homepage": "https://github.com/ufbmi/geographical-entity-ontology/wiki",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Geographical Entity Ontology",
      "prefix": "geo",
      "version": "2016-03-26"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/GEO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "GEO"
    }
  },
  "gexo": {
    "bioportal": {
      "name": "Gene Expression Ontology",
      "prefix": "GEXO"
    },
    "mappings": {
      "bioportal": "GEXO",
      "ols": "gexo"
    },
    "ols": {
      "contact": "vladimir.n.mironov@gmail.com",
      "description": "Gene Expression Ontology",
      "download": "http://www.bio.ntnu.no/ontology/GeXO/gexo.rdf",
      "homepage": "http://www.semantic-systems-biology.org/apo",
      "name": "Gene Expression Ontology",
      "prefix": "gexo",
      "version": "2019-09-18"
    }
  },
  "ghr": {
    "example": "saddan",
    "name": "Genetics Home Reference",
    "url": "https://medlineplus.gov/genetics/condition/$1"
  },
  "giardiadb": {
    "mappings": {
      "miriam": "giardiadb",
      "n2t": "giardiadb",
      "prefixcommons": "GIARDIADB"
    },
    "miriam": {
      "deprecated": false,
      "description": "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "https://giardiadb.org/giardiadb/",
      "id": "00000151",
      "name": "GiardiaDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "giardiadb",
      "provider_url": "https://giardiadb.org/giardiadb/app/record/gene/$1",
      "sampleId": "GL50803_102438"
    },
    "n2t": {
      "description": "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "GL50803_102438",
      "homepage": "https://giardiadb.org/giardiadb/",
      "name": "GiardiaDB at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "giardiadb",
      "provider_url": "https://giardiadb.org/giardiadb/app/record/gene/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/giardiadb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GIARDIADB"
    }
  },
  "glida.gpcr": {
    "mappings": {
      "miriam": "glida.gpcr",
      "n2t": "glida.gpcr",
      "prefixcommons": "GLIDA.GPCR"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.",
      "homepage": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/",
      "id": "00000493",
      "name": "GLIDA GPCR",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z-_0-9]+$",
      "prefix": "glida.gpcr",
      "provider_url": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1",
      "sampleId": "ACM1_HUMAN"
    },
    "n2t": {
      "description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.",
      "example": "ACM1_HUMAN",
      "homepage": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/",
      "name": "GLIDA GPCR at Kyoto University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z-_0-9]+$",
      "prefix": "glida.gpcr",
      "provider_url": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/glida.gpcr/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GLIDA.GPCR"
    }
  },
  "glida.ligand": {
    "mappings": {
      "miriam": "glida.ligand",
      "n2t": "glida.ligand",
      "prefixcommons": "GLIDA.LIGAND"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.",
      "homepage": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/",
      "id": "00000494",
      "name": "GLIDA Ligand",
      "namespaceEmbeddedInLui": false,
      "pattern": "^L\\d+$",
      "prefix": "glida.ligand",
      "provider_url": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1",
      "sampleId": "L000001"
    },
    "n2t": {
      "description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.",
      "example": "L000001",
      "homepage": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/",
      "name": "GLIDA Ligand at Kyoto University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^L\\d+$",
      "prefix": "glida.ligand",
      "provider_url": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/glida.ligand/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GLIDA.LIGAND"
    }
  },
  "glycoepitope": {
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      "miriam": "glycoepitope",
      "n2t": "glycoepitope",
      "prefixcommons": "GLYCOEPITOPE"
    },
    "miriam": {
      "deprecated": false,
      "description": "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.",
      "homepage": "https://www.glycoepitope.jp/epitopes/",
      "id": "00000478",
      "name": "GlycoEpitope",
      "namespaceEmbeddedInLui": false,
      "pattern": "^EP\\d{4}$",
      "prefix": "glycoepitope",
      "provider_url": "https://www.glycoepitope.jp/epitopes/$1",
      "sampleId": "EP0311"
    },
    "n2t": {
      "description": "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.",
      "example": "EP0311",
      "homepage": "https://www.glycoepitope.jp/epitopes/",
      "name": "GlycoEpitope at Ritsumeikan University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^EP\\d{4}$",
      "prefix": "glycoepitope",
      "provider_url": "https://www.glycoepitope.jp/epitopes/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/glycoepitope/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GLYCOEPITOPE"
    }
  },
  "glycomedb": {
    "mappings": {
      "miriam": "glycomedb",
      "n2t": "glycomedb",
      "prefixcommons": "GLYCOMEDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.",
      "homepage": "https://glytoucan.org/",
      "id": "00000114",
      "name": "GlycomeDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "glycomedb",
      "provider_url": "https://glytoucan.org/Structures/Glycans/$1",
      "sampleId": "G77500AY"
    },
    "n2t": {
      "description": "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.",
      "example": "G77500AY",
      "homepage": "https://glytoucan.org/",
      "name": "GlycomeDB carbohydrate structure database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "glycomedb",
      "provider_url": "https://glytoucan.org/Structures/Glycans/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/glycomedb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GLYCOMEDB"
    }
  },
  "glycopost": {
    "mappings": {
      "miriam": "glycopost"
    },
    "miriam": {
      "deprecated": false,
      "description": "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines.",
      "homepage": "https://glycopost.glycosmos.org",
      "id": "00000721",
      "name": "GlycoPOST",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GPST[0-9]{6}$",
      "prefix": "glycopost",
      "provider_url": "https://glycopost.glycosmos.org/entry/$1",
      "sampleId": "GPST000024"
    }
  },
  "glygen": {
    "example": "G24361QY",
    "homepage": "https://glygen.org/glycan/",
    "mappings": {
      "uniprot": "GlyGen",
      "uniprot.database": "GlyGen"
    },
    "name": "GlyGen: Computational and Informatics Resources for Glycoscience",
    "uniprot": {
      "category": "PTM databases",
      "formatter": "https://glygen.org/protein/%u#glycosylation",
      "identifier": "254",
      "link_is_explicit": "true",
      "name": "GlyGen: Computational and Informatics Resources for Glycoscience",
      "prefix": "GlyGen"
    },
    "url": "https://glygen.org/glycan/$1"
  },
  "glytoucan": {
    "mappings": {
      "miriam": "glytoucan",
      "n2t": "glytoucan",
      "prefixcommons": "GLYTOUCAN"
    },
    "miriam": {
      "deprecated": false,
      "description": "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data.",
      "homepage": "https://glytoucan.org",
      "id": "00000608",
      "name": "GlyTouCan",
      "namespaceEmbeddedInLui": false,
      "pattern": "^G[0-9]{5}[A-Z]{2}$",
      "prefix": "glytoucan",
      "provider_url": "https://glytoucan.org/Structures/Glycans/$1",
      "sampleId": "G00054MO"
    },
    "n2t": {
      "description": "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data.",
      "example": "G00054MO",
      "homepage": "https://glytoucan.org",
      "name": "The Glycan Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^G[0-9]{5}[A-Z]{2}$",
      "prefix": "glytoucan",
      "provider_url": "https://glytoucan.org/Structures/Glycans/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/glytoucan/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GLYTOUCAN"
    }
  },
  "gmd": {
    "mappings": {
      "miriam": "gmd",
      "n2t": "gmd",
      "prefixcommons": "GMD"
    },
    "miriam": {
      "deprecated": false,
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena.",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "id": "00000274",
      "name": "Golm Metabolome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx",
      "sampleId": "68513255-fc44-4041-bc4b-4fd2fae7541d"
    },
    "n2t": {
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena.",
      "example": "68513255-fc44-4041-bc4b-4fd2fae7541d",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "name": "Golm Metabolome Database at Max Planck Institute of Molecular Plant Physiology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gmd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GMD"
    }
  },
  "gmd.analyte": {
    "mappings": {
      "miriam": "gmd.analyte",
      "n2t": "gmd.analyte",
      "prefixcommons": "GMD.ANALYTE"
    },
    "miriam": {
      "deprecated": false,
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes.",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "id": "00000426",
      "name": "Golm Metabolome Database Analyte",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd.analyte",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/Analytes/$1",
      "sampleId": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80"
    },
    "n2t": {
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes.",
      "example": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "name": "Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd.analyte",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/Analytes/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gmd.analyte/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GMD.ANALYTE"
    }
  },
  "gmd.gcms": {
    "mappings": {
      "miriam": "gmd.gcms",
      "n2t": "gmd.gcms",
      "prefixcommons": "GMD.GCMS"
    },
    "miriam": {
      "deprecated": false,
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "id": "00000424",
      "name": "Golm Metabolome Database GC-MS spectra",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd.gcms",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/Spectrums/$1",
      "sampleId": "53d583d8-40c6-40e1-9296-23f821cd77a5"
    },
    "n2t": {
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.",
      "example": "53d583d8-40c6-40e1-9296-23f821cd77a5",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "name": "Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd.gcms",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/Spectrums/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gmd.gcms/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GMD.GCMS"
    }
  },
  "gmd.profile": {
    "mappings": {
      "miriam": "gmd.profile",
      "n2t": "gmd.profile",
      "prefixcommons": "GMD.PROFILE"
    },
    "miriam": {
      "deprecated": false,
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "id": "00000423",
      "name": "Golm Metabolome Database Profile",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd.profile",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1",
      "sampleId": "10b38aaf-b977-4950-85b8-f4775f66658d"
    },
    "n2t": {
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.",
      "example": "10b38aaf-b977-4950-85b8-f4775f66658d",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "name": "Golm Metabolome Database (Profile) at Max Planck Institute of Molecular Plant Physiology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd.profile",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gmd.profile/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GMD.PROFILE"
    }
  },
  "gmd.ref": {
    "mappings": {
      "miriam": "gmd.ref",
      "n2t": "gmd.ref",
      "prefixcommons": "GMD.REF"
    },
    "miriam": {
      "deprecated": false,
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "id": "00000425",
      "name": "Golm Metabolome Database Reference Substance",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd.ref",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1",
      "sampleId": "8cf84adb-b4db-4807-ac98-0004247c35df"
    },
    "n2t": {
      "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.",
      "example": "8cf84adb-b4db-4807-ac98-0004247c35df",
      "homepage": "http://gmd.mpimp-golm.mpg.de/",
      "name": "Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$",
      "prefix": "gmd.ref",
      "provider_url": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gmd.ref/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GMD.REF"
    }
  },
  "gmelin": {
    "example": "1466",
    "name": "Gmelins Handbuch der anorganischen Chemie",
    "pattern": "^[1-9][0-9]{3,6}$",
    "wikidata": {
      "prefix": "P1578"
    }
  },
  "gno": {
    "bioportal": {
      "name": "Glycan Naming Ontology",
      "prefix": "GNO"
    },
    "example": "10004892",
    "mappings": {
      "bioportal": "GNO",
      "obofoundry": "gno",
      "ols": "gno"
    },
    "name": "Glycan Naming and Subsumption Ontology",
    "obofoundry": {
      "contact": "nje5@georgetown.edu",
      "contact.label": "Nathan Edwards",
      "deprecated": false,
      "description": "GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). GNOme organizes these stable accessions for interative browsing, for text-based searching, and for automated reasoning with well-defined characterization levels.",
      "download.json": "http://purl.obolibrary.org/obo/gno.json",
      "download.obo": "http://purl.obolibrary.org/obo/gno.obo",
      "download.owl": "http://purl.obolibrary.org/obo/gno.owl",
      "homepage": "https://gnome.glyomics.org/",
      "license": "CC-BY 4.0",
      "name": "Glycan Naming and Subsumption Ontology (GNOme)",
      "prefix": "gno"
    },
    "ols": {
      "description": "An ontology for glycans based on GlyTouCan, but organized by subsumption.",
      "download": "http://purl.obolibrary.org/obo/gno.owl",
      "homepage": "https://gnome.glyomics.org/",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Glycan Naming Ontology",
      "prefix": "gno",
      "version": "1.7.2",
      "version.iri": "http://purl.obolibrary.org/obo/gno/2021-06-16/gno.owl"
    },
    "pattern": "^\\d{8}$"
  },
  "gnpis": {
    "mappings": {
      "miriam": "gnpis",
      "n2t": "gnpis",
      "prefixcommons": "GNPIS"
    },
    "miriam": {
      "deprecated": false,
      "description": "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.",
      "homepage": "https://urgi.versailles.inra.fr/gnpis/",
      "id": "00000627",
      "name": "GnpIS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "gnpis",
      "provider_url": "https://urgi.versailles.inra.fr/gnpis/#result/term=$1",
      "sampleId": "AY109603"
    },
    "n2t": {
      "description": "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.",
      "example": "AY109603",
      "homepage": "https://urgi.versailles.inra.fr/gnpis/",
      "name": "GnpIS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "gnpis",
      "provider_url": "https://urgi.versailles.inra.fr/gnpis/#result/term=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gnpis/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GNPIS"
    }
  },
  "go": {
    "bioportal": {
      "name": "Gene Ontology",
      "prefix": "GO"
    },
    "example": "0032571",
    "go": {
      "homepage": "http://amigo.geneontology.org/",
      "name": "Gene Ontology Database",
      "prefix": "GO"
    },
    "mappings": {
      "bioportal": "GO",
      "go": "GO",
      "miriam": "go",
      "n2t": "go",
      "ncbi": "GO",
      "obofoundry": "go",
      "ols": "go",
      "prefixcommons": "GO",
      "uniprot": "GO",
      "uniprot.database": "GO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.",
      "homepage": "http://amigo.geneontology.org/",
      "id": "00000022",
      "name": "Gene Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^GO:\\d{7}$",
      "prefix": "go",
      "provider_url": "http://amigo.geneontology.org/amigo/term/GO:$1",
      "sampleId": "0006915"
    },
    "n2t": {
      "description": "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.",
      "example": "0006915",
      "homepage": "http://amigo.geneontology.org/",
      "name": "AmiGO 2",
      "namespaceEmbeddedInLui": true,
      "pattern": "^GO:\\d{7}$",
      "prefix": "go",
      "provider_url": "http://amigo.geneontology.org/amigo/term/GO:$1"
    },
    "ncbi": {
      "example": "123",
      "homepage": "http://amigo.geneontology.org/",
      "name": "Gene Ontology Database identifier",
      "prefix": "GO"
    },
    "obofoundry": {
      "contact": "suzia@stanford.edu",
      "contact.label": "Suzi Aleksander",
      "deprecated": false,
      "description": "An ontology for describing the function of genes and gene products",
      "download.json": "http://purl.obolibrary.org/obo/go.json",
      "download.obo": "http://purl.obolibrary.org/obo/go.obo",
      "download.owl": "http://purl.obolibrary.org/obo/go.owl",
      "homepage": "http://geneontology.org/",
      "license": "CC BY 4.0",
      "name": "Gene Ontology",
      "prefix": "go"
    },
    "ols": {
      "description": "The Gene Ontology (GO) provides a framework and set of concepts for describing the functions of gene products from all organisms.",
      "download": "http://purl.obolibrary.org/obo/go.owl",
      "homepage": "http://geneontology.org/",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Gene Ontology",
      "prefix": "go",
      "version": "2021-07-02",
      "version.iri": "http://purl.obolibrary.org/obo/go/releases/2021-07-02/go.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/GO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "GO"
    },
    "synonyms": [
      "gobp",
      "gocc",
      "gomf",
      "gobpid",
      "goccid",
      "gomfid"
    ],
    "uniprot": {
      "category": "Ontologies",
      "formatter": "https://www.ebi.ac.uk/QuickGO/term/%s",
      "identifier": "37",
      "link_is_explicit": "true",
      "name": "Gene Ontology",
      "prefix": "GO"
    },
    "wikidata": {
      "prefix": "P686"
    }
  },
  "go.model": {
    "example": "5fce9b7300001250",
    "go": {
      "formatter": "http://www.geneontology.org/gocam/$1",
      "homepage": "http://www.geneontology.org/gocam",
      "name": "Gene Ontology Causal Activity Model Database",
      "prefix": "gomodel"
    },
    "mappings": {
      "go": "gomodel"
    },
    "name": "Gene Ontology Causal Assembly Model",
    "url": "noctua.geneontology.org/editor/graph/gomodel:$1"
  },
  "go.ref": {
    "banana": "GO_REF",
    "go": {
      "homepage": "http://current.geneontology.org/metadata/gorefs/index.html",
      "name": "Gene Ontology Database references",
      "prefix": "GO_REF"
    },
    "mappings": {
      "go": "GO_REF",
      "miriam": "go_ref",
      "n2t": "go.ref",
      "prefixcommons": "GO_REF"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made.",
      "homepage": "http://www.geneontology.org/cgi-bin/references.cgi",
      "id": "00000450",
      "name": "Gene Ontology Reference",
      "namespaceEmbeddedInLui": true,
      "pattern": "^GO_REF:\\d{7}$",
      "prefix": "go_ref",
      "provider_url": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/goref-$1.md",
      "sampleId": "0000041"
    },
    "n2t": {
      "description": "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made.",
      "example": "GO_REF:0000041",
      "homepage": "http://www.geneontology.org/cgi-bin/references.cgi",
      "name": "Gene Ontology Reference at The Gene Ontology Consortium",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GO_REF:\\d{7}$",
      "prefix": "go.ref",
      "provider_url": "http://www.geneontology.org/cgi-bin/references.cgi#$1"
    },
    "prefixcommons": {
      "formatter": "http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "GO_REF"
    }
  },
  "goa": {
    "mappings": {
      "miriam": "goa",
      "n2t": "goa",
      "ncbi": "GOA",
      "prefixcommons": "GOA"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.",
      "homepage": "https://www.ebi.ac.uk/GOA/",
      "id": "00000196",
      "name": "GOA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$",
      "prefix": "goa",
      "provider_url": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1",
      "sampleId": "P12345"
    },
    "n2t": {
      "description": "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.",
      "example": "P12345",
      "homepage": "https://www.ebi.ac.uk/GOA/",
      "name": "GOA through QuickGO",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$",
      "prefix": "goa",
      "provider_url": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1"
    },
    "ncbi": {
      "example": "P01100",
      "homepage": "http://www.ebi.ac.uk/GOA/",
      "name": "Gene Ontology Annotation Database Identifier",
      "prefix": "GOA"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/goa/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GOA"
    }
  },
  "goeco": {
    "homepage": "http://geneontology.org/docs/guide-go-evidence-codes/",
    "name": "GO Evidence Code"
  },
  "gold": {
    "mappings": {
      "miriam": "gold"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.",
      "homepage": "https://gold.jgi.doe.gov/",
      "id": "00000733",
      "name": "Genomes OnLine Database (GOLD)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z][a-z][0-9]+$",
      "prefix": "gold",
      "provider_url": "https://gold.jgi.doe.gov/resolver?id=$1",
      "sampleId": "Gs0000008"
    },
    "name": "Genomes Online Database"
  },
  "gold.genome": {
    "mappings": {
      "miriam": "gold.genome",
      "n2t": "gold.genome",
      "prefixcommons": "GOLD.GENOME"
    },
    "miriam": {
      "deprecated": false,
      "description": "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes.",
      "homepage": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi",
      "id": "00000401",
      "name": "GOLD genome",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(Gi|Gc)\\d+$",
      "prefix": "gold.genome",
      "provider_url": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1",
      "sampleId": "Gi07796"
    },
    "n2t": {
      "description": "The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes.",
      "example": "Gi07796",
      "homepage": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi",
      "name": "GOLD genome at Department of Energy Joint Genome Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[Gi|Gc]\\d+$",
      "prefix": "gold.genome",
      "provider_url": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gold.genome/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GOLD.GENOME"
    }
  },
  "gold.meta": {
    "mappings": {
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    },
    "miriam": {
      "deprecated": false,
      "description": "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. \n\nThe GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples.",
      "homepage": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi",
      "id": "00000402",
      "name": "GOLD metadata",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Gm\\d+$",
      "prefix": "gold.meta",
      "provider_url": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1",
      "sampleId": "Gm00047"
    },
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      "description": "The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples.",
      "example": "Gm00047",
      "homepage": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi",
      "name": "GOLD metadata at Department of Energy Joint Genome Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Gm\\d+$",
      "prefix": "gold.meta",
      "provider_url": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/gold.meta/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GOLD.META"
    }
  },
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      "category": "Reference resources",
      "homepage": "https://patents.google.com",
      "name": "Google Patents",
      "prefix": "Patent",
      "url": "https://patents.google.com/patent/$1"
    },
    "mappings": {
      "cellosaurus": "Patent",
      "miriam": "google.patent",
      "n2t": "google.patent",
      "prefixcommons": "GOOGLE.PATENT"
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    "miriam": {
      "deprecated": false,
      "description": "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date.",
      "homepage": "https://www.google.com/patents/",
      "id": "00000537",
      "name": "Google Patents",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{2}\\d+([A-Z])?$",
      "prefix": "google.patent",
      "provider_url": "https://www.google.com/patents/$1",
      "sampleId": "US4145692"
    },
    "n2t": {
      "description": "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date.",
      "example": "US4145692",
      "homepage": "https://www.google.com/patents/",
      "name": "Google Patents at Google",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{2}\\d+([A-Z])?$",
      "prefix": "google.patent",
      "provider_url": "https://www.google.com/patents/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/google.patent/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GOOGLE.PATENT"
    },
    "synonyms": [
      "patent"
    ]
  },
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    "biolink": {
      "formatter": "https://scholar.google.com/citations?user=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "GSID"
    },
    "mappings": {
      "biolink": "GSID"
    },
    "name": "Google Scholar Researcher ID"
  },
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      "is_identifiers": false,
      "is_obo": true,
      "prefix": "GOREL"
    },
    "download_owl": "ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl",
    "go": {
      "description": "Additional relations pending addition into RO",
      "name": "GO Extensions to OBO Relation Ontology Ontology",
      "prefix": "GOREL"
    },
    "mappings": {
      "biolink": "GOREL",
      "go": "GOREL"
    },
    "name": "GO Relations"
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    },
    "miriam": {
      "deprecated": false,
      "description": "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models.",
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      "id": "00000212",
      "name": "GPCRDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "gpcrdb",
      "provider_url": "http://www.gpcrdb.org/protein/$1/",
      "sampleId": "RL3R1_HUMAN"
    },
    "n2t": {
      "description": "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models.",
      "example": "RL3R1_HUMAN",
      "homepage": "http://www.gpcrdb.org/",
      "name": "GPCRDB at Radboud University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "gpcrdb",
      "provider_url": "http://www.gpcrdb.org/protein/$1/"
    },
    "name": "G protein-coupled receptor database",
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      "formatter": "http://identifiers.org/gpcrdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GPCRDB"
    },
    "uniprot": {
      "category": "Protein family/group databases",
      "formatter": "https://gpcrdb.org/protein/%s/",
      "identifier": "38",
      "name": "Information system for G protein-coupled receptors (GPCRs)",
      "prefix": "GPCRDB"
    }
  },
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    "miriam": {
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      "homepage": "http://gpmdb.thegpm.org/",
      "id": "00000649",
      "name": "GPMDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GPM\\d+$",
      "prefix": "gpmdb",
      "provider_url": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1",
      "sampleId": "GPM32310002988"
    },
    "n2t": {
      "description": "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.",
      "example": "GPM32310002988",
      "homepage": "http://gpmdb.thegpm.org/",
      "name": "GPMDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GPM\\d+$",
      "prefix": "gpmdb",
      "provider_url": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1"
    },
    "name": "Global Proteome Machine Database",
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      "formatter": "http://identifiers.org/gpmdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GPMDB"
    }
  },
  "gramene.gene": {
    "go": {
      "formatter": "http://www.gramene.org/db/genes/search_gene?acc=$1",
      "homepage": "http://www.gramene.org/",
      "name": "Gramene",
      "prefix": "GR_GENE",
      "synonyms": [
        "GR_gene"
      ]
    },
    "mappings": {
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    "miriam": {
      "deprecated": false,
      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene.",
      "homepage": "http://www.gramene.org/",
      "id": "00000182",
      "name": "Gramene genes",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GR\\:\\d+$",
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      "sampleId": "GR:0080039"
    },
    "n2t": {
      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene.",
      "example": "GR:0080039",
      "homepage": "http://www.gramene.org/",
      "name": "Gramene Genes at Cold Spring Harbor",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GR\\:\\d+$",
      "prefix": "gramene.gene",
      "provider_url": "http://www.gramene.org/db/genes/search_gene?acc=$1"
    },
    "name": "Gramene Gene",
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      "formatter": "http://identifiers.org/gramene.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GRAMENE.GENE"
    },
    "synonyms": [
      "GR_GENE"
    ]
  },
  "gramene.growthstage": {
    "banana": "gramene.growthstage:GRO\\",
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      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.",
      "homepage": "http://www.gramene.org/",
      "id": "00000508",
      "name": "Gramene Growth Stage Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^GRO\\:\\d+$",
      "prefix": "gramene.growthstage",
      "provider_url": "http://www.gramene.org/db/ontology/search?id=GRO:$1",
      "sampleId": "0007133"
    },
    "n2t": {
      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.",
      "example": "0007133",
      "homepage": "http://www.gramene.org/",
      "name": "Gramene Growth Stage Ontology at Cold Spring Harbor",
      "namespaceEmbeddedInLui": true,
      "pattern": "^GRO\\:\\d+$",
      "prefix": "gramene.growthstage",
      "provider_url": "http://www.gramene.org/db/ontology/search?id=GRO:$1"
    },
    "name": "Gramene Growth Stage Ontology",
    "namespaceEmbeddedInLui": false,
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://identifiers.org/gramene.growthstage/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GRAMENE.GROWTHSTAGE"
    },
    "url": "http://www.gramene.org/db/ontology/search?id=GRO:$1"
  },
  "gramene.protein": {
    "go": {
      "formatter": "http://www.gramene.org/db/protein/protein_search?acc=$1",
      "homepage": "http://www.gramene.org/",
      "name": "Gramene",
      "prefix": "GR_PROTEIN",
      "synonyms": [
        "GR_protein"
      ]
    },
    "mappings": {
      "go": "GR_PROTEIN",
      "miriam": "gramene.protein",
      "n2t": "gramene.protein",
      "prefixcommons": "GRAMENE.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene.",
      "homepage": "http://www.gramene.org/",
      "id": "00000181",
      "name": "Gramene protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "gramene.protein",
      "provider_url": "http://www.gramene.org/db/protein/protein_search?protein_id=$1",
      "sampleId": "78073"
    },
    "n2t": {
      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene.",
      "example": "78073",
      "homepage": "http://www.gramene.org/",
      "name": "Gramene Protein at Cold Spring Harbor",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "gramene.protein",
      "provider_url": "http://www.gramene.org/db/protein/protein_search?protein_id=$1"
    },
    "name": "Gramene protein",
    "prefixcommons": {
      "formatter": "http://identifiers.org/gramene.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GRAMENE.PROTEIN"
    },
    "synonyms": [
      "GR_PROTEIN"
    ]
  },
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      "formatter": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1",
      "homepage": "http://www.gramene.org/",
      "name": "Gramene",
      "prefix": "GR_QTL"
    },
    "mappings": {
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      "n2t": "gramene.qtl",
      "prefixcommons": "GRAMENE.QTL"
    },
    "miriam": {
      "deprecated": false,
      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene.",
      "homepage": "http://www.gramene.org/",
      "id": "00000184",
      "name": "Gramene QTL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "gramene.qtl",
      "provider_url": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1",
      "sampleId": "CQG5"
    },
    "n2t": {
      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene.",
      "example": "CQG5",
      "homepage": "http://www.gramene.org/",
      "name": "Gramene Quantitative Trait Loci at Cold Spring Harbor",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "gramene.qtl",
      "provider_url": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1"
    },
    "name": "Gramene QTL",
    "prefixcommons": {
      "formatter": "http://identifiers.org/gramene.qtl/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GRAMENE.QTL"
    },
    "synonyms": [
      "GR_QTL"
    ]
  },
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      "deprecated": false,
      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.",
      "homepage": "http://www.gramene.org/",
      "id": "00000183",
      "name": "Gramene Taxonomy",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GR\\_tax\\:\\d+$",
      "prefix": "gramene.taxonomy",
      "provider_url": "http://www.gramene.org/db/ontology/search?id=$1",
      "sampleId": "GR_tax:013681"
    },
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      "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.",
      "example": "GR_tax:013681",
      "homepage": "http://www.gramene.org/",
      "name": "Gramene Taxonomy at Cold Spring Harbor",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GR\\_tax\\:\\d+$",
      "prefix": "gramene.taxonomy",
      "provider_url": "http://www.gramene.org/db/ontology/search?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gramene.taxonomy/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GRAMENE.TAXONOMY"
    }
  },
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      "n2t": "greengenes",
      "ncbi": "Greengenes",
      "prefixcommons": "GREENGENES"
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    "miriam": {
      "deprecated": false,
      "description": "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.",
      "homepage": "http://greengenes.lbl.gov/",
      "id": "00000165",
      "name": "GreenGenes",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "greengenes",
      "provider_url": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1",
      "sampleId": "100000"
    },
    "n2t": {
      "description": "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.",
      "example": "100000",
      "homepage": "http://greengenes.lbl.gov/",
      "name": "GreenGenes at Lawrence Berkeley",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "greengenes",
      "provider_url": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1"
    },
    "ncbi": {
      "example": "269185",
      "homepage": "http://greengenes.lbl.gov/",
      "name": "16S rRNA gene database",
      "prefix": "Greengenes"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/greengenes/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GREENGENES"
    }
  },
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      "n2t": "grid",
      "prefixcommons": "GRID"
    },
    "miriam": {
      "deprecated": false,
      "description": "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally.",
      "homepage": "https://www.grid.ac/",
      "id": "00000593",
      "name": "GRID",
      "namespaceEmbeddedInLui": false,
      "pattern": "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$",
      "prefix": "grid",
      "provider_url": "https://www.grid.ac/institutes/$1",
      "sampleId": "grid.225360.0"
    },
    "n2t": {
      "description": "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally.",
      "example": "grid.225360.0",
      "homepage": "https://www.grid.ac/",
      "name": "GRID at Digital Science & Research Ltd.",
      "namespaceEmbeddedInLui": false,
      "pattern": "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$",
      "prefix": "grid",
      "provider_url": "https://www.grid.ac/institutes/$1"
    },
    "name": "Global Research Identifier Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/grid/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GRID"
    }
  },
  "grin.taxonomy": {
    "go": {
      "formatter": "https://npgsweb.ars-grin.gov/gringlobal/accessiondetail.aspx?id=$1",
      "homepage": "https://www.ars-grin.gov/",
      "name": "Germplasm Resources Information Network",
      "prefix": "GRIN",
      "synonyms": [
        "grin"
      ]
    },
    "mappings": {
      "go": "GRIN",
      "miriam": "grin.taxonomy",
      "n2t": "grin.taxonomy",
      "ncbi": "GRIN",
      "prefixcommons": "GRIN.TAXONOMY"
    },
    "miriam": {
      "deprecated": false,
      "description": "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact.",
      "homepage": "http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en",
      "id": "00000166",
      "name": "GRIN Plant Taxonomy",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "grin.taxonomy",
      "provider_url": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1",
      "sampleId": "19333"
    },
    "n2t": {
      "description": "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact.",
      "example": "19333",
      "homepage": "http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en",
      "name": "GRIN at Maryland",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "grin.taxonomy",
      "provider_url": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1"
    },
    "ncbi": {
      "example": "1005973",
      "homepage": "http://www.ars-grin.gov/",
      "name": "Germplasm Resources Information Network",
      "prefix": "GRIN"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/grin.taxonomy/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GRIN.TAXONOMY"
    }
  },
  "gro": {
    "bioportal": {
      "name": "Gene Regulation Ontology",
      "prefix": "GRO"
    },
    "mappings": {
      "bioportal": "GRO",
      "obofoundry": "gro",
      "prefixcommons": "GRO"
    },
    "obofoundry": {
      "contact": "po-discuss@plantontology.org",
      "contact.label": "Plant Ontology Administrators",
      "deprecated": true,
      "homepage": "http://www.gramene.org/plant_ontology/",
      "name": "Cereal Plant Gross Anatomy",
      "prefix": "gro"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/GRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "GRO"
    }
  },
  "grsdb": {
    "mappings": {
      "miriam": "grsdb",
      "n2t": "grsdb",
      "prefixcommons": "GRSDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank.",
      "homepage": "http://bioinformatics.ramapo.edu/GRSDB2/",
      "id": "00000495",
      "name": "GRSDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "grsdb",
      "provider_url": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1",
      "sampleId": "10142"
    },
    "n2t": {
      "description": "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank.",
      "example": "10142",
      "homepage": "http://bioinformatics.ramapo.edu/GRSDB2/",
      "name": "GRSDB v2 at  Ramapo College of New Jersey",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "grsdb",
      "provider_url": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1"
    },
    "name": "G-Rich Sequences Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/grsdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GRSDB"
    }
  },
  "gsfa": {
    "example": "174",
    "homepage": "http://www.fao.org/gsfaonline",
    "name": "General Standard for Food Additives (GSFA) Online Database",
    "synonyms": [
      "FAO/WHO_standards"
    ],
    "url": "http://www.fao.org/gsfaonline/additives/details.html?id=$1"
  },
  "gsso": {
    "bioportal": {
      "name": "Gender, Sex, and Sexual Orientation Ontology",
      "prefix": "GSSO"
    },
    "mappings": {
      "bioportal": "GSSO",
      "miriam": "gsso",
      "obofoundry": "gsso",
      "ols": "gsso"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology.",
      "homepage": "https://bioportal.bioontology.org/",
      "id": "00000712",
      "name": "Gender, Sex, and Sexual Orientation (GSSO) Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^GSSO:\\d{6}$",
      "prefix": "gsso",
      "provider_url": "http://purl.obolibrary.org/obo/GSSO_$1",
      "sampleId": "002368"
    },
    "name": "Gender, Sex, and Sexual Orientation Ontology",
    "obofoundry": {
      "contact": "kronkcj@mail.uc.edu",
      "contact.label": "Clair Kronk",
      "deprecated": false,
      "description": "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences.",
      "download.json": "http://purl.obolibrary.org/obo/gsso.json",
      "download.obo": "http://purl.obolibrary.org/obo/gsso.obo",
      "download.owl": "http://purl.obolibrary.org/obo/gsso.owl",
      "homepage": "https://gsso.research.cchmc.org/",
      "license": "Apache 2.0 License",
      "name": "Gender, Sex, and Sexual Orientation (GSSO) ontology",
      "prefix": "gsso"
    },
    "ols": {
      "description": "GSSO is the Gender, Sex, and Sex Orientation ontology, including terms related to gender identity and expression, sexual and romantic identity and orientation, and sexual and reproductive behavior.",
      "download": "http://purl.obolibrary.org/obo/gsso.owl",
      "homepage": "https://gsso.research.cchmc.org/",
      "license": "LICENSE-2.0",
      "name": "GSSO - the Gender, Sex, and Sexual Orientation ontology",
      "prefix": "gsso",
      "version.iri": "http://purl.obolibrary.org/obo/gsso/releases/2.0.5/gsso.owl"
    }
  },
  "gtex": {
    "biolink": {
      "formatter": "https://www.gtexportal.org/home/gene/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "GTEx"
    },
    "mappings": {
      "biolink": "GTEx",
      "miriam": "gtex",
      "n2t": "gtex",
      "prefixcommons": "GTEX"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation.",
      "homepage": "https://www.gtexportal.org",
      "id": "00000663",
      "name": "GTEx",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w.+$",
      "prefix": "gtex",
      "provider_url": "https://www.gtexportal.org/home/gene/$1",
      "sampleId": "BRIP1"
    },
    "n2t": {
      "description": "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation. ",
      "example": "BRIP1",
      "homepage": "https://www.gtexportal.org",
      "name": "The GTEx Project",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w.+$",
      "prefix": "gtex",
      "provider_url": "https://www.gtexportal.org/home/gene/$1"
    },
    "name": "Genotype-Tissue Expression",
    "prefixcommons": {
      "formatter": "http://identifiers.org/gtex/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GTEX"
    }
  },
  "gtr": {
    "appears_in": [
      "mondo"
    ],
    "comment": "Identifiers appearing in MONDO don't match any of the resources apparent endpoints",
    "example": "AN0097748",
    "homepage": "https://www.ncbi.nlm.nih.gov/gtr/",
    "name": "Genetic Testing Registry"
  },
  "gudmap": {
    "mappings": {
      "miriam": "gudmap",
      "n2t": "gudmap",
      "prefixcommons": "GUDMAP"
    },
    "miriam": {
      "deprecated": false,
      "description": "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract.",
      "homepage": "http://www.gudmap.org/",
      "id": "00000643",
      "name": "GUDMAP",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$",
      "prefix": "gudmap",
      "provider_url": "https://gudmap.org/id/$1",
      "sampleId": "Q-2958"
    },
    "n2t": {
      "description": "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract.",
      "example": "Q-2958",
      "homepage": "http://www.gudmap.org/",
      "name": "GUDMAP",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$",
      "prefix": "gudmap",
      "provider_url": "https://gudmap.org/id/$1"
    },
    "name": "Genitourinary Development Molecular Anatomy Project",
    "prefixcommons": {
      "formatter": "http://identifiers.org/gudmap/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GUDMAP"
    }
  },
  "gwascentral.marker": {
    "homepage": "https://www.gwascentral.org/markers",
    "mappings": {
      "miriam": "gwascentral.marker",
      "n2t": "gwascentral.marker",
      "prefixcommons": "GWASCENTRAL.MARKER"
    },
    "miriam": {
      "deprecated": false,
      "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker.",
      "homepage": "https://www.gwascentral.org/markers/",
      "id": "00000542",
      "name": "GWAS Central Marker",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HGVM\\d+$",
      "prefix": "gwascentral.marker",
      "provider_url": "https://www.gwascentral.org/marker/$1",
      "sampleId": "HGVM15354"
    },
    "n2t": {
      "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker.",
      "example": "HGVM15354",
      "homepage": "https://www.gwascentral.org/markers/",
      "name": "GWAS Central Marker at University of Leicester",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HGVM\\d+$",
      "prefix": "gwascentral.marker",
      "provider_url": "https://www.gwascentral.org/marker/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gwascentral.marker/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GWASCENTRAL.MARKER"
    }
  },
  "gwascentral.phenotype": {
    "homepage": "https://www.gwascentral.org/phenotypes",
    "mappings": {
      "miriam": "gwascentral.phenotype",
      "n2t": "gwascentral.phenotype",
      "prefixcommons": "GWASCENTRAL.PHENOTYPE"
    },
    "miriam": {
      "deprecated": false,
      "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype.",
      "homepage": "https://www.gwascentral.org/phenotypes",
      "id": "00000543",
      "name": "GWAS Central Phenotype",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HGVPM\\d+$",
      "prefix": "gwascentral.phenotype",
      "provider_url": "https://www.gwascentral.org/phenotype/$1",
      "sampleId": "HGVPM623"
    },
    "n2t": {
      "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype.",
      "example": "HGVPM623",
      "homepage": "https://www.gwascentral.org/phenotypes",
      "name": "GWAS Central Phenotype at University of Leicester",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HGVP\\d+$",
      "prefix": "gwascentral.phenotype",
      "provider_url": "https://www.gwascentral.org/phenotype/$1"
    },
    "pattern": "^HGVPM\\d+$",
    "prefixcommons": {
      "formatter": "http://identifiers.org/gwascentral.phenotype/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GWASCENTRAL.PHENOTYPE"
    }
  },
  "gwascentral.study": {
    "homepage": "https://www.gwascentral.org/studies",
    "mappings": {
      "miriam": "gwascentral.study",
      "n2t": "gwascentral.study",
      "prefixcommons": "GWASCENTRAL.STUDY"
    },
    "miriam": {
      "deprecated": false,
      "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study.",
      "homepage": "https://www.gwascentral.org/studies",
      "id": "00000540",
      "name": "GWAS Central Study",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HGVST\\d+$",
      "prefix": "gwascentral.study",
      "provider_url": "https://www.gwascentral.org/study/$1",
      "sampleId": "HGVST1828"
    },
    "n2t": {
      "description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study.",
      "example": "HGVST1828",
      "homepage": "https://www.gwascentral.org/studies",
      "name": "GWAS Central Study at University of Leicester",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HGVST\\d+$",
      "prefix": "gwascentral.study",
      "provider_url": "https://www.gwascentral.org/study/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gwascentral.study/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GWASCENTRAL.STUDY"
    }
  },
  "gxa.expt": {
    "mappings": {
      "miriam": "gxa.expt",
      "n2t": "gxa.expt",
      "prefixcommons": "GXA.EXPT"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments.",
      "homepage": "https://www.ebi.ac.uk/gxa/",
      "id": "00000379",
      "name": "GXA Expt",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[AEP]-\\w{4}-\\d+$",
      "prefix": "gxa.expt",
      "provider_url": "https://www.ebi.ac.uk/gxa/experiments/$1",
      "sampleId": "E-MTAB-2037"
    },
    "n2t": {
      "description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments.",
      "example": "E-MTAB-2037",
      "homepage": "https://www.ebi.ac.uk/gxa/",
      "name": "GXA Expt at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[AEP]-\\w{4}-\\d+$",
      "prefix": "gxa.expt",
      "provider_url": "https://www.ebi.ac.uk/gxa/experiments/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gxa.expt/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GXA.EXPT"
    }
  },
  "gxa.gene": {
    "mappings": {
      "miriam": "gxa.gene",
      "n2t": "gxa.gene",
      "prefixcommons": "GXA.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.",
      "homepage": "https://www.ebi.ac.uk/gxa/",
      "id": "00000378",
      "name": "GXA Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "gxa.gene",
      "provider_url": "https://www.ebi.ac.uk/gxa/genes/$1",
      "sampleId": "AT4G01080"
    },
    "n2t": {
      "description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.",
      "example": "AT4G01080",
      "homepage": "https://www.ebi.ac.uk/gxa/",
      "name": "GXA Gene at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "gxa.gene",
      "provider_url": "https://www.ebi.ac.uk/gxa/genes/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/gxa.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "GXA.GENE"
    }
  },
  "habronattus": {
    "mappings": {
      "obofoundry": "habronattus",
      "prefixcommons": "HABRONATTUS"
    },
    "obofoundry": {
      "contact": "peteremidford@yahoo.com",
      "contact.label": "Peter Midford",
      "deprecated": true,
      "homepage": "http://www.mesquiteproject.org/ontology/Habronattus/index.html",
      "name": "Habronattus courtship",
      "prefix": "habronattus"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/HABRONATTUS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "HABRONATTUS"
    }
  },
  "hamap": {
    "go": {
      "formatter": "http://hamap.expasy.org/unirule/$1",
      "homepage": "http://hamap.expasy.org/",
      "name": "High-quality Automated and Manual Annotation of microbial Proteomes",
      "prefix": "HAMAP"
    },
    "mappings": {
      "go": "HAMAP",
      "miriam": "hamap",
      "n2t": "hamap",
      "prefixcommons": "HAMAP",
      "uniprot": "HAMAP",
      "uniprot.database": "HAMAP"
    },
    "miriam": {
      "deprecated": false,
      "description": "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.",
      "homepage": "https://hamap.expasy.org/",
      "id": "00000292",
      "name": "HAMAP",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MF_\\d+$",
      "prefix": "hamap",
      "provider_url": "https://hamap.expasy.org/unirule/$1",
      "sampleId": "MF_01400"
    },
    "n2t": {
      "description": "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.",
      "example": "MF_01400",
      "homepage": "https://hamap.expasy.org/",
      "name": "HAPMAP at Swiss Institute of Bioinformatics",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MF_\\d+$",
      "prefix": "hamap",
      "provider_url": "https://hamap.expasy.org/unirule/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hamap/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HAMAP"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "https://hamap.expasy.org/signature/%s",
      "identifier": "41",
      "link_is_explicit": "true",
      "name": "HAMAP database of protein families",
      "prefix": "HAMAP"
    }
  },
  "hancestro": {
    "biolink": {
      "formatter": "http://www.ebi.ac.uk/ancestro/ancestro_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "HANCESTRO"
    },
    "bioportal": {
      "name": "Human Ancestry Ontology",
      "prefix": "HANCESTRO"
    },
    "mappings": {
      "biolink": "HANCESTRO",
      "bioportal": "HANCESTRO",
      "obofoundry": "hancestro",
      "ols": "hancestro"
    },
    "obofoundry": {
      "contact": "danielle.welter@uni.lu",
      "contact.label": "Danielle Welter",
      "deprecated": false,
      "description": "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies.",
      "download.owl": "http://purl.obolibrary.org/obo/hancestro.owl",
      "homepage": "https://github.com/EBISPOT/ancestro",
      "license": "CC-BY 4.0",
      "name": "Human Ancestry Ontology",
      "prefix": "hancestro"
    },
    "ols": {
      "description": "Human ancestry ontology for the NHGRI GWAS Catalog",
      "download": "http://purl.obolibrary.org/obo/hancestro.owl",
      "homepage": "https://github.com/EBISPOT/ancestro",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Human Ancestry Ontology",
      "prefix": "hancestro",
      "version": "2.5",
      "version.iri": "http://purl.obolibrary.org/obo/hancestro/releases/2020-12-18/hancestro.owl"
    }
  },
  "hao": {
    "bioportal": {
      "name": "Hymenoptera Anatomy Ontology",
      "prefix": "HAO"
    },
    "example": "0000187",
    "mappings": {
      "bioportal": "HAO",
      "obofoundry": "hao",
      "ols": "hao",
      "prefixcommons": "HAO"
    },
    "obofoundry": {
      "contact": "diapriid@gmail.com",
      "contact.label": "Matt Yoder",
      "deprecated": false,
      "description": "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)",
      "download.obo": "http://purl.obolibrary.org/obo/hao.obo",
      "download.owl": "http://purl.obolibrary.org/obo/hao.owl",
      "homepage": "http://hymao.org",
      "license": "CC-0",
      "name": "Hymenoptera Anatomy Ontology",
      "prefix": "hao"
    },
    "ols": {
      "description": "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)",
      "download": "http://purl.obolibrary.org/obo/hao.owl",
      "homepage": "http://hymao.org",
      "name": "Hymenoptera Anatomy Ontology",
      "prefix": "hao",
      "version": "2021-03-05",
      "version.iri": "http://purl.obolibrary.org/obo/hao/2021-03-05/hao.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/HAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "HAO"
    }
  },
  "hcao": {
    "mappings": {
      "ols": "hcao"
    },
    "ols": {
      "description": "Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas.",
      "download": "https://raw.githubusercontent.com/ebi-ait/ontology/master/hcao.owl",
      "name": "Human Cell Atlas Ontology",
      "prefix": "hcao",
      "version": "2021-07-19",
      "version.iri": "http://ontology.data.humancellatlas.org/ontologies/hcao/releases/2021-07-19/hcao.owl"
    }
  },
  "hcpcs": {
    "biolink": {
      "formatter": "http://purl.bioontology.org/ontology/HCPCS/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "HCPCS"
    },
    "bioportal": {
      "name": "Healthcare Common Procedure Coding System",
      "prefix": "HCPCS"
    },
    "mappings": {
      "biolink": "HCPCS",
      "bioportal": "HCPCS"
    },
    "name": "Healthcare Common Procedure Coding System"
  },
  "hcvdb": {
    "homepage": "http://euhcvdb.ibcp.fr",
    "mappings": {
      "miriam": "hcvdb",
      "n2t": "hcvdb",
      "prefixcommons": "HCVDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses.",
      "homepage": "http://euhcvdb.ibcp.fr/euHCVdb/",
      "id": "00000207",
      "name": "HCVDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^M\\d{5}$",
      "prefix": "hcvdb",
      "provider_url": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1",
      "sampleId": "M58335"
    },
    "n2t": {
      "description": "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses.",
      "example": "M58335",
      "homepage": "http://euhcvdb.ibcp.fr/euHCVdb/",
      "name": "HCVDB at CNRS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^M\\d{5}$",
      "prefix": "hcvdb",
      "provider_url": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1"
    },
    "name": "Hepatitis C Virus Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/hcvdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HCVDB"
    }
  },
  "hdr": {
    "mappings": {
      "miriam": "hdr",
      "n2t": "hdr",
      "prefixcommons": "HDR"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders.",
      "homepage": "http://research.nhgri.nih.gov/apps/homeodomain/web/",
      "id": "00000497",
      "name": "Homeodomain Research",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hdr",
      "provider_url": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=$1",
      "sampleId": "63"
    },
    "n2t": {
      "description": "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders.",
      "example": "63",
      "homepage": "http://research.nhgri.nih.gov/apps/homeodomain/web/",
      "name": "Homeodomain Research at National Human Genome Research Institute (NIH)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hdr",
      "provider_url": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hdr/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HDR"
    }
  },
  "hgmd": {
    "mappings": {
      "miriam": "hgmd",
      "n2t": "hgmd",
      "prefixcommons": "HGMD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases.",
      "homepage": "http://www.hgmd.cf.ac.uk/ac/index.php",
      "id": "00000392",
      "name": "HGMD",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z_0-9]+$",
      "prefix": "hgmd",
      "provider_url": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1",
      "sampleId": "CALM1"
    },
    "n2t": {
      "description": "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases.",
      "example": "CALM1",
      "homepage": "http://www.hgmd.cf.ac.uk/ac/index.php",
      "name": "HGMD at Cardiff University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z_0-9]+$",
      "prefix": "hgmd",
      "provider_url": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1"
    },
    "name": "Human Gene Mutation Database",
    "prefixcommons": {
      "formatter": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "HGMD"
    }
  },
  "hgnc": {
    "bioportal": {
      "name": "HUGO Gene Nomenclature",
      "prefix": "HGNC"
    },
    "cellosaurus": {
      "category": "Organism-specific databases",
      "homepage": "https://www.genenames.org",
      "name": "Human Gene Nomenclature Committee Database",
      "prefix": "HGNC",
      "url": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$1"
    },
    "example": "16793",
    "go": {
      "formatter": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$1",
      "homepage": "http://www.genenames.org/",
      "name": "HUGO Gene Nomenclature Committee",
      "prefix": "HGNC"
    },
    "homepage": "http://www.genenames.org",
    "mappings": {
      "bioportal": "HGNC",
      "cellosaurus": "HGNC",
      "go": "HGNC",
      "miriam": "hgnc",
      "n2t": "hgnc",
      "ncbi": "HGNC",
      "prefixcommons": "HGNC",
      "uniprot": "HGNC",
      "uniprot.database": "HGNC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene.  All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.",
      "homepage": "https://www.genenames.org",
      "id": "00000080",
      "name": "HGNC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^((HGNC|hgnc):)?\\d{1,5}$",
      "prefix": "hgnc",
      "provider_url": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1",
      "sampleId": "2674"
    },
    "n2t": {
      "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene.  All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.",
      "example": "2674",
      "homepage": "https://www.genenames.org",
      "name": "HUGO Genome Nomenclature Committee",
      "namespaceEmbeddedInLui": false,
      "pattern": "^((HGNC|hgnc):)?\\d{1,5}$",
      "prefix": "hgnc",
      "provider_url": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1"
    },
    "name": "HUGO Gene Nomenclature Committee",
    "ncbi": {
      "example": "HGNC:2041",
      "homepage": "http://www.genenames.org/cgi-bin/search",
      "name": "Human Gene Nomenclature Database",
      "prefix": "HGNC"
    },
    "prefixcommons": {
      "formatter": "http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "HGNC"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "comment": "Replacement for Genew",
      "formatter": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/%s",
      "identifier": "42",
      "link_is_explicit": "true",
      "name": "Human Gene Nomenclature Database",
      "prefix": "HGNC"
    },
    "wikidata": {
      "prefix": "P354"
    }
  },
  "hgnc.genefamily": {
    "example": "2029",
    "homepage": "http://www.genenames.org",
    "mappings": {
      "miriam": "hgnc.family",
      "n2t": "hgnc.genefamily",
      "prefixcommons": "HGNC.GENEFAMILY"
    },
    "miriam": {
      "deprecated": true,
      "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides symbols for both structural and functional gene families. This collection refers to records using the HGNC family symbol.",
      "homepage": "https://www.genenames.org/",
      "id": "00000520",
      "name": "HGNC Family",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9-]+(#[A-Z0-9-]+)?$",
      "prefix": "hgnc.family",
      "provider_url": "https://registry.identifiers.org/deprecation/resources/MIR:00100671/$1",
      "sampleId": "PADI"
    },
    "n2t": {
      "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.",
      "example": "141",
      "homepage": "https://www.genenames.org/",
      "name": "HGNC gene family at HUGO Genome Nomenclature Committee",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hgnc.genefamily",
      "provider_url": "https://www.genenames.org/cgi-bin/genefamilies/set/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hgnc.genefamily/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HGNC.GENEFAMILY"
    },
    "synonyms": [
      "GFAM",
      "HGNC_GROUP",
      "hgnc.family"
    ]
  },
  "hgnc.genegroup": {
    "mappings": {
      "miriam": "hgnc.genegroup"
    },
    "miriam": {
      "deprecated": false,
      "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.",
      "homepage": "https://www.genenames.org",
      "id": "00000709",
      "name": "HGNC Gene Group",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hgnc.genegroup",
      "provider_url": "https://www.genenames.org/cgi-bin/genefamilies/set/$1",
      "sampleId": "141"
    }
  },
  "hgnc.symbol": {
    "mappings": {
      "miriam": "hgnc.symbol",
      "n2t": "hgnc.symbol",
      "prefixcommons": "HGNC.SYMBOL"
    },
    "miriam": {
      "deprecated": false,
      "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.",
      "homepage": "https://www.genenames.org/",
      "id": "00000362",
      "name": "HGNC Symbol",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z-0-9_]+(\\@)?$",
      "prefix": "hgnc.symbol",
      "provider_url": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1",
      "sampleId": "DAPK1"
    },
    "n2t": {
      "description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.",
      "example": "DAPK1",
      "homepage": "https://www.genenames.org/",
      "name": "HGNC Symbol at HUGO Genome Nomenclature Committee",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z-0-9_]+(\\@)?$",
      "prefix": "hgnc.symbol",
      "provider_url": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hgnc.symbol/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HGNC.SYMBOL"
    }
  },
  "hinv.locus": {
    "mappings": {
      "miriam": "hinv.locus",
      "n2t": "hinv.locus",
      "prefixcommons": "HINV.LOCUS"
    },
    "miriam": {
      "deprecated": false,
      "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view.",
      "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
      "id": "00000167",
      "name": "H-InvDb Locus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HIX\\d{7}(\\.\\d+)?$",
      "prefix": "hinv.locus",
      "provider_url": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1",
      "sampleId": "HIX0004394"
    },
    "n2t": {
      "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view.",
      "example": "HIX0004394",
      "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
      "name": "H-Invitational Locus View at BIRC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HIX\\d{7}(\\.\\d+)?$",
      "prefix": "hinv.locus",
      "provider_url": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hinv.locus/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HINV.LOCUS"
    }
  },
  "hinv.protein": {
    "mappings": {
      "miriam": "hinv.protein",
      "n2t": "hinv.protein",
      "prefixcommons": "HINV.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view.",
      "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
      "id": "00000169",
      "name": "H-InvDb Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HIP\\d{9}(\\.\\d+)?$",
      "prefix": "hinv.protein",
      "provider_url": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1",
      "sampleId": "HIP000030660"
    },
    "n2t": {
      "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view.",
      "example": "HIP000030660",
      "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
      "name": "H-Invitational Protein View at BIRC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HIP\\d{9}(\\.\\d+)?$",
      "prefix": "hinv.protein",
      "provider_url": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hinv.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HINV.PROTEIN"
    }
  },
  "hinv.transcript": {
    "mappings": {
      "miriam": "hinv.transcript",
      "n2t": "hinv.transcript",
      "prefixcommons": "HINV.TRANSCRIPT"
    },
    "miriam": {
      "deprecated": false,
      "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view.",
      "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
      "id": "00000168",
      "name": "H-InvDb Transcript",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HIT\\d{9}(\\.\\d+)?$",
      "prefix": "hinv.transcript",
      "provider_url": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1",
      "sampleId": "HIT000195363"
    },
    "n2t": {
      "description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view.",
      "example": "HIT000195363",
      "homepage": "http://h-invitational.jp/hinv/ahg-db/index.jsp",
      "name": "H-Invitational Transcript View at BIRC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HIT\\d{9}(\\.\\d+)?$",
      "prefix": "hinv.transcript",
      "provider_url": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hinv.transcript/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HINV.TRANSCRIPT"
    }
  },
  "hmdb": {
    "mappings": {
      "miriam": "hmdb",
      "n2t": "hmdb",
      "prefixcommons": "HMDB",
      "wikidata": "P2057"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.",
      "homepage": "http://www.hmdb.ca/",
      "id": "00000051",
      "name": "HMDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HMDB\\d+$",
      "prefix": "hmdb",
      "provider_url": "http://www.hmdb.ca/metabolites/$1",
      "sampleId": "HMDB00001"
    },
    "n2t": {
      "description": "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.",
      "example": "HMDB00001",
      "homepage": "http://www.hmdb.ca/",
      "name": "The Human Metabolome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HMDB\\d+$",
      "prefix": "hmdb",
      "provider_url": "http://www.hmdb.ca/metabolites/$1"
    },
    "name": "Human Metabolome Database",
    "prefixcommons": {
      "formatter": "http://www.hmdb.ca/metabolites/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "HMDB"
    },
    "synonyms": [
      "HMDB"
    ],
    "wikidata": {
      "database": "Q5937262",
      "database.homepage": "https://hmdb.ca",
      "database.label": "Human Metabolome Database",
      "format": "https://www.hmdb.ca/metabolites/$1",
      "name": "Human Metabolome Database ID",
      "pattern": "HMDB\\d+",
      "prefix": "P2057"
    }
  },
  "hms.lincs.compound": {
    "example": "10001-101",
    "name": "HMS LINCS Compound",
    "synonyms": [
      "HMS-LINCS",
      "hmsl_id"
    ],
    "url": "https://lincs.hms.harvard.edu/db/sm/$1"
  },
  "hog": {
    "download_obo": "ftp://ftp.bgee.org/general/ontologies/HOG.obo",
    "example": "0000255",
    "name": "Homologous Organ Groups"
  },
  "hogenom": {
    "mappings": {
      "miriam": "hogenom",
      "n2t": "hogenom",
      "prefixcommons": "HOGENOM",
      "uniprot": "HOGENOM",
      "uniprot.database": "HOGENOM"
    },
    "miriam": {
      "deprecated": false,
      "description": "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.",
      "homepage": "http://pbil.univ-lyon1.fr/databases/hogenom/",
      "id": "00000213",
      "name": "HOGENOM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "hogenom",
      "provider_url": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1",
      "sampleId": "HBG284870"
    },
    "n2t": {
      "description": "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.",
      "example": "HBG284870",
      "homepage": "http://pbil.univ-lyon1.fr/databases/hogenom/",
      "name": "HOGENOM at CNRS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "hogenom",
      "provider_url": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1"
    },
    "name": "Database of Complete Genome Homologous Genes Families",
    "prefixcommons": {
      "formatter": "http://identifiers.org/hogenom/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HOGENOM"
    },
    "uniprot": {
      "category": "Phylogenomic databases",
      "formatter": "http://hogenom.univ-lyon1.fr/query_sequence?seq=%u",
      "identifier": "44",
      "link_is_explicit": "true",
      "name": "The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms",
      "prefix": "HOGENOM"
    }
  },
  "hom": {
    "bioportal": {
      "name": "Ontology of Homology and Related Concepts in Biology",
      "prefix": "HOM"
    },
    "mappings": {
      "bioportal": "HOM",
      "obofoundry": "hom",
      "ols": "hom",
      "prefixcommons": "HOM"
    },
    "obofoundry": {
      "contact": "bgee@sib.swiss",
      "contact.label": "Frederic Bastian",
      "deprecated": false,
      "description": "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.",
      "download.owl": "http://purl.obolibrary.org/obo/hom.owl",
      "homepage": "https://github.com/BgeeDB/homology-ontology",
      "license": "CC0",
      "name": "Homology Ontology",
      "prefix": "hom"
    },
    "ols": {
      "description": "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.",
      "download": "http://purl.obolibrary.org/obo/hom.owl",
      "homepage": "https://github.com/BgeeDB/homology-ontology",
      "name": "Homology Ontology",
      "prefix": "hom",
      "version": "2015-01-07",
      "version.iri": "http://purl.obolibrary.org/obo/hom/releases/2015-01-07/hom.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/HOM_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "HOM"
    }
  },
  "homd.seq": {
    "mappings": {
      "miriam": "homd.seq",
      "n2t": "homd.seq",
      "prefixcommons": "HOMD.SEQ"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.",
      "homepage": "http://www.homd.org/index.php",
      "id": "00000170",
      "name": "HOMD Sequence Metainformation",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SEQF\\d+$",
      "prefix": "homd.seq",
      "provider_url": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1",
      "sampleId": "SEQF1003"
    },
    "n2t": {
      "description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.",
      "example": "SEQF1003",
      "homepage": "http://www.homd.org/index.php",
      "name": "HOMD sequence metainformation at The Forsyth Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SEQF\\d+$",
      "prefix": "homd.seq",
      "provider_url": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/homd.seq/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HOMD.SEQ"
    }
  },
  "homd.taxon": {
    "mappings": {
      "miriam": "homd.taxon",
      "n2t": "homd.taxon",
      "prefixcommons": "HOMD.TAXON"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.",
      "homepage": "http://www.homd.org/index.php",
      "id": "00000171",
      "name": "HOMD Taxonomy",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "homd.taxon",
      "provider_url": "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$1&view=dynamic",
      "sampleId": "811"
    },
    "n2t": {
      "description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.",
      "example": "811",
      "homepage": "http://www.homd.org/index.php",
      "name": "HOMD taxon information at The Forsyth Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "homd.taxon",
      "provider_url": "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$1&view=dynamic"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/homd.taxon/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HOMD.TAXON"
    }
  },
  "homologene": {
    "mappings": {
      "miriam": "homologene",
      "n2t": "homologene",
      "prefixcommons": "HOMOLOGENE",
      "wikidata": "P593"
    },
    "miriam": {
      "deprecated": false,
      "description": "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.",
      "homepage": "https://www.ncbi.nlm.nih.gov/homologene/",
      "id": "00000275",
      "name": "HomoloGene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "homologene",
      "provider_url": "https://www.ncbi.nlm.nih.gov/homologene/$1",
      "sampleId": "1000"
    },
    "n2t": {
      "description": "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.",
      "example": "1000",
      "homepage": "https://www.ncbi.nlm.nih.gov/homologene/",
      "name": "Homologene at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "homologene",
      "provider_url": "https://www.ncbi.nlm.nih.gov/homologene/$1"
    },
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/homologene/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "HOMOLOGENE"
    },
    "wikidata": {
      "database": "Q468215",
      "database.homepage": "http://www.ncbi.nlm.nih.gov/homologene",
      "database.label": "HomoloGene",
      "format": "https://www.ncbi.nlm.nih.gov/homologene?term=$1",
      "homepage": "http://www.ncbi.nlm.nih.gov/homologene",
      "name": "HomoloGene ID",
      "pattern": "[1-9]\\d{0,5}",
      "prefix": "P593"
    }
  },
  "hovergen": {
    "homepage": "https://pbil.univ-lyon1.fr/databases/hovergen.php",
    "mappings": {
      "miriam": "hovergen",
      "n2t": "hovergen",
      "prefixcommons": "HOVERGEN"
    },
    "miriam": {
      "deprecated": false,
      "description": "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.",
      "homepage": "http://pbil.univ-lyon1.fr/databases/hovergen.php",
      "id": "00000074",
      "name": "HOVERGEN",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HBG\\d+$",
      "prefix": "hovergen",
      "provider_url": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN",
      "sampleId": "HBG004341"
    },
    "n2t": {
      "description": "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.",
      "example": "HBG004341",
      "homepage": "http://pbil.univ-lyon1.fr/databases/hovergen.php",
      "name": "Hovergen",
      "namespaceEmbeddedInLui": false,
      "pattern": "^HBG\\d+$",
      "prefix": "hovergen",
      "provider_url": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN"
    },
    "name": "Homologous Vertebrate Genes Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/hovergen/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HOVERGEN"
    }
  },
  "hp": {
    "bioportal": {
      "name": "Human Phenotype Ontology",
      "prefix": "HP"
    },
    "download_obo": "http://purl.obolibrary.org/obo/hp.obo",
    "example": "0011140",
    "mappings": {
      "bioportal": "HP",
      "miriam": "hp",
      "n2t": "hp",
      "obofoundry": "hp",
      "ols": "hp",
      "prefixcommons": "HP",
      "wikidata": "P3841"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.",
      "homepage": "http://human-phenotype-ontology.github.io/",
      "id": "00000571",
      "name": "Human Phenotype Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^HP:\\d{7}$",
      "prefix": "hp",
      "provider_url": "https://hpo.jax.org/app/browse/term/HP:$1",
      "sampleId": "0000118"
    },
    "n2t": {
      "description": "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.",
      "example": "0000118",
      "homepage": "http://human-phenotype-ontology.github.io/",
      "name": "Human Phenotype Ontology at Institute for Medical Genetics and Human Genetics",
      "namespaceEmbeddedInLui": true,
      "pattern": "^HP:\\d{7}$",
      "prefix": "hp",
      "provider_url": "http://compbio.charite.de/hpoweb/showterm?id=HP:$1"
    },
    "obofoundry": {
      "contact": "dr.sebastian.koehler@gmail.com",
      "contact.label": "Sebastian Koehler",
      "deprecated": false,
      "description": "A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.",
      "download.obo": "http://purl.obolibrary.org/obo/hp.obo",
      "download.owl": "http://purl.obolibrary.org/obo/hp.owl",
      "homepage": "http://www.human-phenotype-ontology.org/",
      "license": "hpo",
      "name": "Human Phenotype Ontology",
      "prefix": "hp"
    },
    "ols": {
      "description": "The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities and clinical features encountered in human disease.",
      "download": "http://purl.obolibrary.org/obo/hp.owl",
      "homepage": "http://www.human-phenotype-ontology.org/",
      "license": "license",
      "name": "Human Phenotype Ontology",
      "prefix": "hp",
      "version": "2021-06-13",
      "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2021-06-13/hp.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/HP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "HP"
    },
    "wikidata": {
      "database": "Q17027854",
      "database.homepage": "http://www.human-phenotype-ontology.org/",
      "database.label": "Human Phenotype Ontology",
      "format": "https://hpo.jax.org/app/browse/term/$1",
      "homepage": "http://human-phenotype-ontology.github.io/about.html",
      "name": "Human Phenotype Ontology ID",
      "pattern": "HP:[0-9]{7}",
      "prefix": "P3841"
    }
  },
  "hpa": {
    "go": {
      "formatter": "http://www.proteinatlas.org/tissue_profile.php?antibody_id=$1",
      "homepage": "http://www.proteinatlas.org/",
      "name": "Human Protein Atlas tissue profile information",
      "prefix": "HPA"
    },
    "mappings": {
      "go": "HPA",
      "miriam": "hpa",
      "n2t": "hpa",
      "prefixcommons": "HPA",
      "uniprot": "HPA",
      "uniprot.database": "HPA"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.",
      "homepage": "http://www.proteinatlas.org/",
      "id": "00000336",
      "name": "HPA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ENSG\\d{11}$",
      "prefix": "hpa",
      "provider_url": "http://www.proteinatlas.org/$1",
      "sampleId": "ENSG00000026508"
    },
    "n2t": {
      "description": "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.",
      "example": "ENSG00000026508",
      "homepage": "http://www.proteinatlas.org/",
      "name": "Human Protein Atlas at AlbaNova University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ENSG\\d{11}$",
      "prefix": "hpa",
      "provider_url": "http://www.proteinatlas.org/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hpa/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HPA"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://www.proteinatlas.org/%s",
      "identifier": "46",
      "link_is_explicit": "true",
      "name": "Human Protein Atlas",
      "prefix": "HPA"
    }
  },
  "hpath": {
    "mappings": {
      "ols": "hpath"
    },
    "ols": {
      "description": "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.",
      "download": "https://raw.githubusercontent.com/Novartis/hpath/master/src/hpath.obo",
      "homepage": "https://github.com/Novartis/hpath",
      "name": "Histopathology Ontology",
      "prefix": "hpath",
      "version": "2019-07-05"
    }
  },
  "hpm.peptide": {
    "mappings": {
      "miriam": "hpm.peptide",
      "n2t": "hpm.peptide",
      "prefixcommons": "HPM.PEPTIDE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.",
      "homepage": "http://www.humanproteomemap.org/index.php",
      "id": "00000527",
      "name": "Human Proteome Map Peptide",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hpm.peptide",
      "provider_url": "http://www.humanproteomemap.org/spectrum.php?pep_id=$1",
      "sampleId": "9606117"
    },
    "n2t": {
      "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.",
      "example": "9606117",
      "homepage": "http://www.humanproteomemap.org/index.php",
      "name": "Human Proteome Map Peptide at Institute of Bioinformatics (Bangalore)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hpm.peptide",
      "provider_url": "http://www.humanproteomemap.org/spectrum.php?pep_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hpm.peptide/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HPM.PEPTIDE"
    }
  },
  "hpm.protein": {
    "mappings": {
      "miriam": "hpm.protein",
      "n2t": "hpm.protein",
      "prefixcommons": "HPM.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.",
      "homepage": "http://www.humanproteomemap.org/index.php",
      "id": "00000526",
      "name": "Human Proteome Map Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hpm.protein",
      "provider_url": "http://www.humanproteomemap.org/protein.php?hpm_id=$1",
      "sampleId": "1968"
    },
    "n2t": {
      "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.",
      "example": "1968",
      "homepage": "http://www.humanproteomemap.org/index.php",
      "name": "Human Proteome Map Protein at Institute of Bioinformatics (Bangalore)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hpm.protein",
      "provider_url": "http://www.humanproteomemap.org/protein.php?hpm_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hpm.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HPM.PROTEIN"
    }
  },
  "hprd": {
    "mappings": {
      "miriam": "hprd",
      "n2t": "hprd",
      "prefixcommons": "HPRD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.",
      "homepage": "http://www.hprd.org/",
      "id": "00000377",
      "name": "HPRD",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hprd",
      "provider_url": "http://www.hprd.org/protein/$1",
      "sampleId": "00001"
    },
    "n2t": {
      "description": "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.",
      "example": "00001",
      "homepage": "http://www.hprd.org/",
      "name": "Human Protein Reference Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "hprd",
      "provider_url": "http://www.hprd.org/protein/$1"
    },
    "name": "Human Protein Reference Database",
    "prefixcommons": {
      "formatter": "http://www.hprd.org/protein/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "HPRD"
    }
  },
  "hpscreg": {
    "cellosaurus": {
      "category": "Cell line databases/resources",
      "homepage": "https://hpscreg.eu",
      "name": "Human Pluripotent Stem Cell Registry",
      "prefix": "hPSCreg",
      "url": "https://hpscreg.eu/cell-line/$1"
    },
    "mappings": {
      "cellosaurus": "hPSCreg",
      "miriam": "hpscreg",
      "n2t": "hpscreg"
    },
    "miriam": {
      "deprecated": false,
      "description": "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).",
      "homepage": "https://hpscreg.eu/",
      "id": "00000674",
      "name": "Human Pluripotent Stem Cell Registry",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$",
      "prefix": "hpscreg",
      "provider_url": "https://hpscreg.eu/cell-line/$1",
      "sampleId": "BCRTi001-A"
    },
    "n2t": {
      "description": "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).",
      "example": "BCRTi001-A",
      "homepage": "https://hpscreg.eu/",
      "name": "Human Pluripotent Stem Cell Registry",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$",
      "prefix": "hpscreg",
      "provider_url": "https://hpscreg.eu/cell-line/$1"
    }
  },
  "hsapdv": {
    "biolink": {
      "formatter": "http://purl.obolibrary.org/obo/HsapDv_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "HsapDv"
    },
    "bioportal": {
      "name": "Human Developmental Stages Ontology",
      "prefix": "HSAPDV"
    },
    "example": "0000194",
    "mappings": {
      "biolink": "HsapDv",
      "bioportal": "HSAPDV",
      "obofoundry": "hsapdv",
      "ols": "hsapdv",
      "prefixcommons": "HSAPDV"
    },
    "obofoundry": {
      "contact": "bgee@sib.swiss",
      "contact.label": "bgee",
      "deprecated": false,
      "description": "Life cycle stages for Human",
      "download.obo": "http://purl.obolibrary.org/obo/hsapdv.obo",
      "download.owl": "http://purl.obolibrary.org/obo/hsapdv.owl",
      "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv",
      "license": "CC-BY",
      "name": "Human Developmental Stages",
      "preferredPrefix": "HsapDv",
      "prefix": "hsapdv"
    },
    "ols": {
      "description": "Life cycle stages for Human",
      "download": "http://purl.obolibrary.org/obo/hsapdv.owl",
      "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv",
      "name": "Human Developmental Stages",
      "prefix": "hsapdv",
      "version": "2020-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/hsapdv/releases/2020-03-10/hsapdv.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/HSAPDV_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "HSAPDV"
    },
    "synonyms": [
      "HsapDv"
    ]
  },
  "hsdb": {
    "example": "5621",
    "name": "Hazardous Substances Data Bank",
    "wikidata": {
      "prefix": "P2062"
    }
  },
  "hso": {
    "bioportal": {
      "name": "Health Surveillance Ontology",
      "prefix": "HSO"
    },
    "mappings": {
      "bioportal": "HSO",
      "obofoundry": "hso",
      "ols": "hso"
    },
    "obofoundry": {
      "contact": "fernanda.dorea@sva.se",
      "contact.label": "Fernanda Dorea",
      "deprecated": false,
      "description": "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance.",
      "download.owl": "http://purl.obolibrary.org/obo/hso.owl",
      "homepage": "https://w3id.org/hso",
      "license": "CC-BY",
      "name": "Health Surveillance Ontology",
      "prefix": "hso"
    },
    "ols": {
      "description": "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance.",
      "download": "http://purl.obolibrary.org/obo/hso.owl",
      "homepage": "https://w3id.org/hso",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "Health Surveillance Ontology",
      "prefix": "hso",
      "version": "2020-11-28",
      "version.iri": "http://purl.obolibrary.org/obo/hso/2020-11-28/hso.owl"
    }
  },
  "hssp": {
    "mappings": {
      "miriam": "hssp",
      "n2t": "hssp",
      "ncbi": "HSSP",
      "prefixcommons": "HSSP"
    },
    "miriam": {
      "deprecated": false,
      "description": "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.",
      "homepage": "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/",
      "id": "00000215",
      "name": "HSSP",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{4}$",
      "prefix": "hssp",
      "provider_url": "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/$1.hssp.bz2",
      "sampleId": "102l"
    },
    "n2t": {
      "description": "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.",
      "example": "102l",
      "homepage": "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/",
      "name": "HSSP at CMBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{4}$",
      "prefix": "hssp",
      "provider_url": "ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/$1.hssp.bz2"
    },
    "ncbi": {
      "example": "12GS",
      "name": "Database of homology-derived secondary structure of proteins",
      "prefix": "HSSP"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/hssp/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HSSP"
    }
  },
  "htn": {
    "bioportal": {
      "name": "Hypertension Ontology",
      "prefix": "HTN"
    },
    "mappings": {
      "bioportal": "HTN",
      "obofoundry": "htn",
      "ols": "htn"
    },
    "obofoundry": {
      "contact": "aellenhicks@gmail.com",
      "contact.label": "Amanda Hicks",
      "deprecated": false,
      "description": "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines",
      "download.owl": "http://purl.obolibrary.org/obo/htn.owl",
      "homepage": "https://github.com/aellenhicks/htn_owl",
      "license": "CC-BY 4.0",
      "name": "Hypertension Ontology",
      "prefix": "htn"
    },
    "ols": {
      "description": "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines",
      "download": "http://purl.obolibrary.org/obo/htn.owl",
      "homepage": "https://github.com/aellenhicks/htn_owl",
      "name": "Hypertension Ontology For Clinical Data",
      "prefix": "htn",
      "version": "2019-06-10"
    }
  },
  "huge": {
    "mappings": {
      "miriam": "huge",
      "n2t": "huge",
      "prefixcommons": "HUGE",
      "uniprot": "HUGE",
      "uniprot.database": "HUGE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Human Unidentified Gene-Encoded (HUGE) protein database contains  results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.",
      "homepage": "http://www.kazusa.or.jp/huge/",
      "id": "00000263",
      "name": "HUGE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^KIAA\\d{4}$",
      "prefix": "huge",
      "provider_url": "http://www.kazusa.or.jp/huge/gfpage/$1/",
      "sampleId": "KIAA0001"
    },
    "n2t": {
      "description": "The Human Unidentified Gene-Encoded (HUGE) protein database contains  results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.",
      "example": "KIAA0001",
      "homepage": "http://www.kazusa.or.jp/huge/",
      "name": "HUGE at Kazusa DNA Research Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^KIAA\\d{4}$",
      "prefix": "huge",
      "provider_url": "http://www.kazusa.or.jp/huge/gfpage/$1/"
    },
    "name": "Human Unidentified Gene-Encoded",
    "prefixcommons": {
      "formatter": "http://identifiers.org/huge/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "HUGE"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "http://www.kazusa.or.jp/huge/gfpage/%s",
      "identifier": "49",
      "name": "Human Unidentified Gene-Encoded large proteins database",
      "prefix": "HUGE"
    }
  },
  "iao": {
    "bioportal": {
      "name": "Information Artifact Ontology",
      "prefix": "IAO"
    },
    "go": {
      "description": "Ontology of information entities, including ontology metadata relations.",
      "name": "Information Artifact Ontology",
      "prefix": "IAO"
    },
    "mappings": {
      "bioportal": "IAO",
      "go": "IAO",
      "miriam": "iao",
      "n2t": "iao",
      "obofoundry": "iao",
      "ols": "iao",
      "prefixcommons": "IAO"
    },
    "miriam": {
      "deprecated": false,
      "description": "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.",
      "homepage": "http://www.ontobee.org/ontology/IAO",
      "id": "00000603",
      "name": "Information Artifact Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{7}$",
      "prefix": "iao",
      "provider_url": "http://purl.obolibrary.org/obo/IAO_$1",
      "sampleId": "0000030"
    },
    "n2t": {
      "description": "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.",
      "example": "0000030",
      "homepage": "http://www.ontobee.org/ontology/IAO",
      "name": "IAO through Ontobee",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{7}$",
      "prefix": "iao",
      "provider_url": "http://purl.obolibrary.org/obo/IAO_$1"
    },
    "obofoundry": {
      "contact": "jiezheng@pennmedicine.upenn.edu",
      "contact.label": "Jie Zheng",
      "deprecated": false,
      "description": "An ontology of information entities.",
      "download.owl": "http://purl.obolibrary.org/obo/iao.owl",
      "homepage": "https://github.com/information-artifact-ontology/IAO/",
      "license": "CC-BY",
      "name": "Information Artifact Ontology",
      "prefix": "iao"
    },
    "ols": {
      "description": "The Information Artifact Ontology (IAO) is an ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch.",
      "download": "http://purl.obolibrary.org/obo/iao.owl",
      "homepage": "https://github.com/information-artifact-ontology/IAO/",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Information Artifact Ontology (IAO)",
      "prefix": "iao",
      "version": "2020-12-09",
      "version.iri": "http://purl.obolibrary.org/obo/iao/2020-12-09/iao.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/IAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "IAO"
    }
  },
  "icd10": {
    "biolink": {
      "formatter": "http://translator.ncats.nih.gov/ICD10_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "ICD10"
    },
    "bioportal": {
      "name": "International Classification of Diseases, Version 10",
      "prefix": "ICD10"
    },
    "mappings": {
      "biolink": "ICD10",
      "bioportal": "ICD10",
      "miriam": "icd",
      "n2t": "icd",
      "prefixcommons": "ICD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes.",
      "homepage": "http://www.who.int/classifications/icd/en/",
      "id": "00000009",
      "name": "ICD",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]\\d+(\\.[-\\d+])?$",
      "prefix": "icd",
      "provider_url": "http://apps.who.int/classifications/icd10/browse/2010/en#/$1",
      "sampleId": "C34"
    },
    "n2t": {
      "description": "The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes.",
      "example": "C34",
      "homepage": "http://www.who.int/classifications/icd/en/",
      "name": "International Statistical Classification of Diseases and Related Health Problems",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]\\d+(\\.[-\\d+])?$",
      "prefix": "icd",
      "provider_url": "http://apps.who.int/classifications/icd10/browse/2010/en#/$1"
    },
    "name": "International Classification of Diseases",
    "prefixcommons": {
      "formatter": "http://identifiers.org/icd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ICD"
    },
    "synonyms": [
      "ICD",
      "ICD10",
      "ICD-10",
      "ICD10CM"
    ],
    "wikidata": {
      "prefix": "P4229"
    }
  },
  "icd11": {
    "example": "RA01.0",
    "name": "International Classification of Diseases 11th Revision",
    "synonyms": [
      "ICD-11"
    ],
    "wikidata": {
      "prefix": "P7807"
    }
  },
  "icd9": {
    "biolink": {
      "formatter": "http://translator.ncats.nih.gov/ICD9_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "ICD9"
    },
    "bioportal": {
      "name": "International Classification of Diseases, Version 9 - Clinical Modification",
      "prefix": "ICD9CM"
    },
    "example": "277.9",
    "mappings": {
      "biolink": "ICD9",
      "bioportal": "ICD9CM"
    },
    "name": "International Classification of Diseases 9th Revision",
    "synonyms": [
      "ICD9",
      "IC9CM",
      "ICD9CM_2005",
      "ICDCM_2005",
      "ICD9_2005",
      "ICD9CM_2006",
      "ICD9CM",
      "ICD9CM_2005",
      "MTHICD9_2006"
    ],
    "wikidata": {
      "prefix": "P493"
    }
  },
  "icdc": {
    "mappings": {
      "miriam": "icdc"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.",
      "homepage": "https://caninecommons.cancer.gov/#/",
      "id": "00000812",
      "name": "Integrated Canine Data Commons",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ICDC[0-9][0-9][0-9][0-9][0-9][0-9]$",
      "prefix": "icdc",
      "provider_url": "https://caninecommons.cancer.gov/#/study/$1",
      "sampleId": "ICDC000101"
    }
  },
  "icdo": {
    "bioportal": {
      "name": "International Classification of Diseases Ontology",
      "prefix": "ICDO"
    },
    "example": "M9861/3",
    "mappings": {
      "bioportal": "ICDO"
    },
    "name": "The International Classification of Diseases for Oncology",
    "synonyms": [
      "ICD-O",
      "ICDO"
    ],
    "wikidata": {
      "prefix": "P563"
    }
  },
  "iceberg.element": {
    "mappings": {
      "miriam": "iceberg.element",
      "n2t": "iceberg.element",
      "prefixcommons": "ICEBERG.ELEMENT"
    },
    "miriam": {
      "deprecated": false,
      "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.",
      "homepage": "http://db-mml.sjtu.edu.cn/ICEberg/",
      "id": "00000469",
      "name": "ICEberg element",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "iceberg.element",
      "provider_url": "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$1",
      "sampleId": "100"
    },
    "n2t": {
      "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.",
      "example": "100",
      "homepage": "http://db-mml.sjtu.edu.cn/ICEberg/",
      "name": "ICEberg element at Shanghai Jiaotong University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "iceberg.element",
      "provider_url": "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/iceberg.element/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ICEBERG.ELEMENT"
    }
  },
  "iceberg.family": {
    "mappings": {
      "miriam": "iceberg.family",
      "n2t": "iceberg.family",
      "prefixcommons": "ICEBERG.FAMILY"
    },
    "miriam": {
      "deprecated": false,
      "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.",
      "homepage": "http://db-mml.sjtu.edu.cn/ICEberg/",
      "id": "00000470",
      "name": "ICEberg family",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "iceberg.family",
      "provider_url": "http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$1",
      "sampleId": "1"
    },
    "n2t": {
      "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.",
      "example": "1",
      "homepage": "http://db-mml.sjtu.edu.cn/ICEberg/",
      "name": "ICEberg family at Shanghai Jiaotong University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "iceberg.family",
      "provider_url": "http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/iceberg.family/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ICEBERG.FAMILY"
    }
  },
  "iceo": {
    "bioportal": {
      "name": "Integrative and Conjugative Element Ontology",
      "prefix": "ICEO"
    },
    "mappings": {
      "bioportal": "ICEO",
      "obofoundry": "iceo",
      "ols": "iceo"
    },
    "obofoundry": {
      "contact": "liumeng94@sjtu.edu.cn",
      "contact.label": "Meng LIU",
      "deprecated": false,
      "description": "ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs).",
      "download.owl": "http://purl.obolibrary.org/obo/iceo.owl",
      "homepage": "https://github.com/ontoice/ICEO",
      "license": "CC-BY",
      "name": "Integrative and Conjugative Element Ontology",
      "prefix": "iceo"
    },
    "ols": {
      "description": "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning.",
      "download": "http://purl.obolibrary.org/obo/iceo.owl",
      "homepage": "https://github.com/ontoice/ICEO",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "ICEO: Ontology of Integrative and Conjugative Elements",
      "prefix": "iceo",
      "version": "2.1"
    }
  },
  "ico": {
    "bioportal": {
      "name": "Informed Consent Ontology",
      "prefix": "ICO"
    },
    "mappings": {
      "bioportal": "ICO",
      "obofoundry": "ico",
      "ols": "ico",
      "prefixcommons": "ICO"
    },
    "obofoundry": {
      "contact": "yongqunh@med.umich.edu",
      "contact.label": "Yongqun Oliver He",
      "deprecated": false,
      "description": "An ontology of clinical informed consents",
      "download.owl": "http://purl.obolibrary.org/obo/ico.owl",
      "homepage": "https://github.com/ICO-ontology/ICO",
      "license": "CC-BY",
      "name": "Informed Consent Ontology",
      "prefix": "ico"
    },
    "ols": {
      "description": "The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.",
      "download": "http://purl.obolibrary.org/obo/ico.owl",
      "homepage": "https://github.com/ICO-ontology/ICO",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "Informed Consent Ontology (ICO)",
      "prefix": "ico",
      "version": "1.0.187",
      "version.iri": "http://purl.obolibrary.org/obo/2020-08-27/ico.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ICO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ICO"
    }
  },
  "ideal": {
    "homepage": "https://www.ideal-db.org",
    "mappings": {
      "miriam": "ideal",
      "n2t": "ideal",
      "prefixcommons": "IDEAL",
      "uniprot": "IDEAL",
      "uniprot.database": "IDEAL"
    },
    "miriam": {
      "deprecated": false,
      "description": "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.",
      "homepage": "http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/",
      "id": "00000398",
      "name": "IDEAL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^IID\\d+$",
      "prefix": "ideal",
      "provider_url": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1",
      "sampleId": "IID00001"
    },
    "n2t": {
      "description": "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.",
      "example": "IID00001",
      "homepage": "http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/",
      "name": "IDEAL at Maebashi Institute of Technology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^IID\\d+$",
      "prefix": "ideal",
      "provider_url": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/idealItem.php?id=$1"
    },
    "name": "Intrinsically Disordered proteins with Extensive Annotations and Literature",
    "prefixcommons": {
      "formatter": "http://identifiers.org/ideal/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "IDEAL"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=%s",
      "identifier": "251",
      "link_is_explicit": "true",
      "name": "Intrinsically Disordered proteins with Extensive Annotations and Literature",
      "prefix": "IDEAL"
    }
  },
  "ido": {
    "bioportal": {
      "name": "Infectious Disease Ontology",
      "prefix": "IDO"
    },
    "mappings": {
      "bioportal": "IDO",
      "miriam": "ido",
      "n2t": "ido",
      "obofoundry": "ido",
      "ols": "ido",
      "prefixcommons": "IDO"
    },
    "miriam": {
      "deprecated": false,
      "description": "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/ido",
      "id": "00000677",
      "name": "Infectious Disease Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "ido",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:$1",
      "sampleId": "0000504"
    },
    "n2t": {
      "description": "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.",
      "example": "0000504",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/ido",
      "name": "IDO through OLS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "ido",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:$1"
    },
    "obofoundry": {
      "contact": "Lindsay.Cowell@utsouthwestern.edu",
      "contact.label": "Lindsay Cowell",
      "deprecated": false,
      "description": "A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain.",
      "download.owl": "http://purl.obolibrary.org/obo/ido.owl",
      "homepage": "http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology",
      "license": "CC-BY 3.0",
      "name": "Infectious Disease Ontology",
      "prefix": "ido"
    },
    "ols": {
      "description": "A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain.",
      "download": "http://purl.obolibrary.org/obo/ido.owl",
      "homepage": "http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology",
      "name": "Infectious Disease Ontology",
      "prefix": "ido",
      "version": "2017-11-03",
      "version.iri": "http://purl.obolibrary.org/obo/ido/2017-11-03/ido.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/IDO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "IDO"
    }
  },
  "idocovid19": {
    "bioportal": {
      "name": "The COVID-19 Infectious Disease Ontology",
      "prefix": "IDO-COVID-19"
    },
    "mappings": {
      "bioportal": "IDO-COVID-19",
      "ols": "idocovid19"
    },
    "ols": {
      "contact": "johnbeverley2021@u.northwestern.edu",
      "description": "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.",
      "download": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-covid-19/master/ontology/ido%20covid-19",
      "homepage": "https://github.com/infectious-disease-ontology-extensions/ido-covid-19",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "The COVID-19 Infectious Disease Ontology",
      "prefix": "idocovid19",
      "version": "2020-07-21",
      "version.iri": "http://purl.obolibrary.org/obo/2020-21-07/ido-covid-19.owl"
    }
  },
  "idoden": {
    "bioportal": {
      "name": "Dengue Fever Ontology",
      "prefix": "IDODEN"
    },
    "mappings": {
      "bioportal": "IDODEN"
    },
    "name": "Dengue Fever Ontology"
  },
  "idomal": {
    "bioportal": {
      "name": "Malaria Ontology",
      "prefix": "IDOMAL"
    },
    "download_obo": "http://purl.obolibrary.org/obo/idomal.obo",
    "example": "0002350",
    "mappings": {
      "bioportal": "IDOMAL",
      "obofoundry": "idomal",
      "ols": "idomal",
      "prefixcommons": "IDOMAL"
    },
    "obofoundry": {
      "contact": "topalis@imbb.forth.gr",
      "contact.label": "Pantelis Topalis",
      "deprecated": false,
      "description": "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.",
      "download.obo": "http://purl.obolibrary.org/obo/idomal.obo",
      "download.owl": "http://purl.obolibrary.org/obo/idomal.owl",
      "homepage": "https://www.vectorbase.org/ontology-browser",
      "license": "CC0",
      "name": "Malaria Ontology",
      "prefix": "idomal"
    },
    "ols": {
      "description": "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.",
      "download": "http://purl.obolibrary.org/obo/idomal.owl",
      "homepage": "https://www.vectorbase.org/ontology-browser",
      "name": "Malaria Ontology",
      "prefix": "idomal",
      "version": "2015-03-16",
      "version.iri": "http://purl.obolibrary.org/obo/idomal/2015-03-16/idomal.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/IDOMAL_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "IDOMAL"
    }
  },
  "idoo": {
    "mappings": {
      "miriam": "idoo",
      "n2t": "idoo"
    },
    "miriam": {
      "deprecated": false,
      "description": "Identifiers.org Ontology",
      "homepage": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology",
      "id": "00000683",
      "name": "Identifiers.org Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9a-zA-Z]+$",
      "prefix": "idoo",
      "provider_url": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1",
      "sampleId": "DataCollection"
    },
    "n2t": {
      "description": "Identifiers.org Ontology",
      "example": "DataCollection",
      "homepage": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology",
      "name": "Identifiers.org Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9a-zA-Z]+$",
      "prefix": "idoo",
      "provider_url": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1"
    }
  },
  "idot": {
    "homepage": "http://biomodels.net/vocab/idot.rdf",
    "mappings": {
      "miriam": "idot",
      "n2t": "idot",
      "prefixcommons": "IDOT"
    },
    "miriam": {
      "deprecated": false,
      "description": "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.",
      "homepage": "https://identifiers.org/",
      "id": "00000519",
      "name": "Identifiers.org Terms",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z]+$",
      "prefix": "idot",
      "provider_url": "https://biomodels.net/vocab/idot.rdf#$1",
      "sampleId": "identifierPattern"
    },
    "n2t": {
      "description": "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.",
      "example": "identifierPattern",
      "homepage": "https://identifiers.org/",
      "name": "IdoT via biomodels.net",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z]+$",
      "prefix": "idot",
      "provider_url": "https://biomodels.net/vocab/idot.rdf#$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/idot/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "IDOT"
    },
    "url": "https://biomodels.net/vocab/idot.rdf#$1"
  },
  "idr": {
    "mappings": {
      "fairsharing": "FAIRsharing.6wf1zw",
      "miriam": "idr"
    },
    "miriam": {
      "deprecated": false,
      "description": "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools.",
      "homepage": "https://idr.openmicroscopy.org",
      "id": "00000743",
      "name": "Image Data Resource",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]{4}$",
      "prefix": "idr",
      "provider_url": "https://idr.openmicroscopy.org/search/?query=Name:idr$1",
      "sampleId": "0001"
    }
  },
  "iev": {
    "mappings": {
      "obofoundry": "iev",
      "prefixcommons": "IEV"
    },
    "obofoundry": {
      "deprecated": true,
      "homepage": "http://www.inoh.org",
      "name": "Event (INOH pathway ontology)",
      "prefix": "iev"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/IEV_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "IEV"
    }
  },
  "igsn": {
    "mappings": {
      "miriam": "igsn",
      "n2t": "igsn"
    },
    "miriam": {
      "deprecated": false,
      "description": "IGSN is a globally unique and persistent identifier for material samples and specimens.  IGSNs are obtained from IGSN e.V. Agents.",
      "homepage": "http://www.geosamples.org/",
      "id": "00000806",
      "name": "International Geo Sample Number",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$",
      "prefix": "igsn",
      "provider_url": "http://igsn.org/$1",
      "sampleId": "AU124"
    },
    "n2t": {
      "example": "SSH000SUA",
      "homepage": "http://www.geosamples.org/",
      "name": "International Geo Sample Number",
      "namespaceEmbeddedInLui": false,
      "prefix": "igsn",
      "provider_url": "hdl.handle.net/10273/$1"
    }
  },
  "ihw": {
    "cellosaurus": {
      "category": "Cell line databases/resources",
      "homepage": "https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html",
      "name": "International Histocompatibility Workshop cell lines",
      "prefix": "IHW"
    },
    "example": "IHW09326",
    "homepage": "https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html",
    "mappings": {
      "cellosaurus": "IHW"
    },
    "name": "International Histocompatibility Workshop cell lines",
    "pattern": "^IHW\\d+$"
  },
  "imdrf": {
    "homepage": "http://www.imdrf.org/",
    "name": "International Medical Device Regulators Forum",
    "references": [
      "https://www.fda.gov/medical-devices/mandatory-reporting-requirements-manufacturers-importers-and-device-user-facilities/mdr-adverse-event-codes"
    ]
  },
  "imex": {
    "mappings": {
      "miriam": "imex",
      "n2t": "imex",
      "prefixcommons": "IMEX"
    },
    "miriam": {
      "deprecated": false,
      "description": "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.",
      "homepage": "https://www.ebi.ac.uk/intact/",
      "id": "00000122",
      "name": "IMEx",
      "namespaceEmbeddedInLui": false,
      "pattern": "^IM-\\d+(-?)(\\d+?)$",
      "prefix": "imex",
      "provider_url": "https://imexcentral.org/icentral/imex/rec/$1",
      "sampleId": "IM-19210-3"
    },
    "n2t": {
      "description": "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.",
      "example": "IM-19210-3",
      "homepage": "https://www.imexconsortium.org/",
      "name": "IMEx Consortium running at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^IM-\\d+(-?)(\\d+?)$",
      "prefix": "imex",
      "provider_url": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=$1"
    },
    "name": "International Molecular Exchange",
    "prefixcommons": {
      "formatter": "http://identifiers.org/imex/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "IMEX"
    }
  },
  "img.gene": {
    "mappings": {
      "miriam": "img.gene",
      "n2t": "img.gene",
      "prefixcommons": "IMG.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.",
      "homepage": "http://img.jgi.doe.gov/",
      "id": "00000176",
      "name": "Integrated Microbial Genomes Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "img.gene",
      "provider_url": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1",
      "sampleId": "638309541"
    },
    "n2t": {
      "description": "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.",
      "example": "638309541",
      "homepage": "http://img.jgi.doe.gov/",
      "name": "Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "img.gene",
      "provider_url": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/img.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "IMG.GENE"
    }
  },
  "img.taxon": {
    "mappings": {
      "miriam": "img.taxon",
      "n2t": "img.taxon",
      "prefixcommons": "IMG.TAXON"
    },
    "miriam": {
      "deprecated": false,
      "description": "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.",
      "homepage": "http://img.jgi.doe.gov/",
      "id": "00000175",
      "name": "Integrated Microbial Genomes Taxon",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "img.taxon",
      "provider_url": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1",
      "sampleId": "648028003"
    },
    "n2t": {
      "description": "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.",
      "example": "648028003",
      "homepage": "http://img.jgi.doe.gov/",
      "name": "Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "img.taxon",
      "provider_url": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/img.taxon/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "IMG.TAXON"
    }
  },
  "imgt.hla": {
    "cellosaurus": {
      "category": "Cell line databases/resources",
      "homepage": "https://www.ebi.ac.uk/ipd/imgt/hla/",
      "name": "IPD-IMGT/HLA database",
      "prefix": "IPD-IMGT/HLA",
      "url": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/fetch_cell.cgi?$1"
    },
    "go": {
      "homepage": "http://www.ebi.ac.uk/imgt/hla",
      "name": "IMGT/HLA human major histocompatibility complex sequence database",
      "prefix": "IMGT_HLA"
    },
    "mappings": {
      "cellosaurus": "IPD-IMGT/HLA",
      "go": "IMGT_HLA",
      "miriam": "imgt.hla",
      "n2t": "imgt.hla",
      "ncbi": "IMGT/HLA",
      "prefixcommons": "IMGT.HLA"
    },
    "miriam": {
      "deprecated": false,
      "description": "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.",
      "homepage": "https://www.ebi.ac.uk/imgt/hla/allele.html",
      "id": "00000331",
      "name": "IMGT HLA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9*:]+$",
      "prefix": "imgt.hla",
      "provider_url": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1",
      "sampleId": "A*01:01:01:01"
    },
    "n2t": {
      "description": "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.",
      "example": "A*01:01:01:01",
      "homepage": "https://www.ebi.ac.uk/imgt/hla/allele.html",
      "name": "IMGT HLA at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9*:]+$",
      "prefix": "imgt.hla",
      "provider_url": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1"
    },
    "ncbi": {
      "example": "HLA00031",
      "homepage": "http://www.ebi.ac.uk/imgt/hla/",
      "name": "Immunogenetics database, human MHC",
      "prefix": "IMGT/HLA"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/imgt.hla/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "IMGT.HLA"
    },
    "synonyms": [
      "IPD-IMGT/HLA"
    ]
  },
  "imgt.ligm": {
    "go": {
      "description": "Database of immunoglobulins and T cell receptors from human and other vertebrates, with translation for fully annotated sequences.",
      "homepage": "http://www.imgt.org/",
      "name": "ImMunoGeneTics database covering immunoglobulins and T-cell receptors",
      "prefix": "IMGT_LIGM"
    },
    "mappings": {
      "go": "IMGT_LIGM",
      "miriam": "imgt.ligm",
      "n2t": "imgt.ligm",
      "ncbi": "IMGT/LIGM",
      "prefixcommons": "IMGT.LIGM"
    },
    "miriam": {
      "deprecated": false,
      "description": "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.",
      "homepage": "http://www.imgt.org/",
      "id": "00000287",
      "name": "IMGT LIGM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^M\\d+$",
      "prefix": "imgt.ligm",
      "provider_url": "http://www.imgt.org/ligmdb/view?id=$1",
      "sampleId": "M94112"
    },
    "n2t": {
      "description": "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.",
      "example": "M94112",
      "homepage": "http://www.imgt.org/",
      "name": "IMGT LIGM at CNRS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^M\\d+$",
      "prefix": "imgt.ligm",
      "provider_url": "http://www.imgt.org/ligmdb/view?id=$1"
    },
    "ncbi": {
      "example": "U03895",
      "homepage": "http://www.imgt.org/IMGTinformation/LIGM.html",
      "name": "Immunogenetics database, immunoglobulins and T-cell receptors",
      "prefix": "IMGT/LIGM"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/imgt.ligm/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "IMGT.LIGM"
    }
  },
  "imr": {
    "mappings": {
      "obofoundry": "imr",
      "prefixcommons": "IMR"
    },
    "obofoundry": {
      "contact": "curator@inoh.org",
      "contact.label": "INOH curators",
      "deprecated": true,
      "homepage": "http://www.inoh.org",
      "name": "Molecule role (INOH Protein name/family name ontology)",
      "prefix": "imr"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/IMR_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "IMR"
    }
  },
  "inchi": {
    "mappings": {
      "miriam": "inchi",
      "n2t": "inchi",
      "prefixcommons": "INCHI"
    },
    "miriam": {
      "deprecated": false,
      "description": "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.",
      "homepage": "http://rdf.openmolecules.net/",
      "id": "00000383",
      "name": "InChI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$",
      "prefix": "inchi",
      "provider_url": "http://rdf.openmolecules.net/?$1",
      "sampleId": "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"
    },
    "n2t": {
      "description": "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.",
      "example": "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3",
      "homepage": "http://webbook.nist.gov/chemistry",
      "name": "InChI through NIST",
      "namespaceEmbeddedInLui": false,
      "pattern": "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$",
      "prefix": "inchi",
      "provider_url": "http://webbook.nist.gov/cgi/cbook.cgi?$1"
    },
    "prefixcommons": {
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      "INN_ID"
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    "n2t": {
      "description": "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.",
      "example": "curien",
      "homepage": "http://jjj.mib.ac.uk/index.html",
      "name": "JWS Online Model Repository at Manchester",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "jws",
      "provider_url": "http://jjj.mib.ac.uk/models/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/jws/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "JWS"
    }
  },
  "kaggle": {
    "mappings": {
      "miriam": "kaggle",
      "n2t": "kaggle"
    },
    "miriam": {
      "deprecated": false,
      "description": "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.",
      "homepage": "https://kaggle.com",
      "id": "00000682",
      "name": "Kaggle",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$",
      "prefix": "kaggle",
      "provider_url": "https://www.kaggle.com/$1",
      "sampleId": "nasa/kepler-exoplanet-search-results"
    },
    "n2t": {
      "description": "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.",
      "example": "nasa/kepler-exoplanet-search-results",
      "homepage": "https://kaggle.com",
      "name": "Kaggle",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$",
      "prefix": "kaggle",
      "provider_url": "https://www.kaggle.com/$1"
    }
  },
  "kegg": {
    "comment": "KEGG prefix has been split into several others",
    "deprecated": true,
    "go": {
      "homepage": "http://www.genome.ad.jp/kegg/",
      "name": "Kyoto Encyclopedia of Genes and Genomes",
      "prefix": "KEGG"
    },
    "mappings": {
      "go": "KEGG",
      "miriam": "kegg",
      "n2t": "kegg",
      "prefixcommons": "KEGG",
      "uniprot": "KEGG",
      "uniprot.database": "KEGG"
    },
    "miriam": {
      "deprecated": false,
      "description": "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.",
      "homepage": "http://www.kegg.jp/",
      "id": "00000578",
      "name": "Kyoto Encyclopedia of Genes and Genomes",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$",
      "prefix": "kegg",
      "provider_url": "http://www.kegg.jp/entry/$1",
      "sampleId": "hsa00190"
    },
    "n2t": {
      "description": "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.",
      "example": "hsa00190",
      "homepage": "http://www.kegg.jp/",
      "name": "KEGG at Kyoto University Bioinformatics Center",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$",
      "prefix": "kegg",
      "provider_url": "http://www.kegg.jp/entry/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG"
    },
    "synonyms": [
      "KEGG"
    ],
    "uniprot": {
      "category": "Genome annotation databases",
      "formatter": "https://www.genome.jp/dbget-bin/www_bget?%s",
      "identifier": "53",
      "link_is_explicit": "true",
      "name": "KEGG: Kyoto Encyclopedia of Genes and Genomes",
      "prefix": "KEGG"
    }
  },
  "kegg.compound": {
    "mappings": {
      "miriam": "kegg.compound",
      "n2t": "kegg.compound",
      "prefixcommons": "KEGG.COMPOUND"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.",
      "homepage": "https://www.genome.jp/kegg/ligand.html",
      "id": "00000013",
      "name": "KEGG Compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "kegg.compound",
      "provider_url": "https://www.kegg.jp/entry/$1",
      "sampleId": "C12345"
    },
    "n2t": {
      "description": "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.",
      "example": "C12345",
      "homepage": "https://www.genome.jp/kegg/ligand.html",
      "name": "KEGG LIGAND Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "kegg.compound",
      "provider_url": "https://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.compound/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.COMPOUND"
    },
    "synonyms": [
      "KEGG.COMPOUND",
      "KEGG COMPOUND"
    ],
    "wikidata": {
      "prefix": "P665"
    }
  },
  "kegg.disease": {
    "mappings": {
      "miriam": "kegg.disease",
      "n2t": "kegg.disease",
      "prefixcommons": "KEGG.DISEASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.",
      "homepage": "http://www.genome.jp/kegg/disease/",
      "id": "00000475",
      "name": "KEGG Disease",
      "namespaceEmbeddedInLui": false,
      "pattern": "^H\\d+$",
      "prefix": "kegg.disease",
      "provider_url": "http://www.kegg.jp/entry/$1",
      "sampleId": "H00076"
    },
    "n2t": {
      "description": "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.",
      "example": "H00076",
      "homepage": "http://www.genome.jp/kegg/disease/",
      "name": "KEGG Disease at Kyoto University Bioinformatics Center",
      "namespaceEmbeddedInLui": false,
      "pattern": "^H\\d+$",
      "prefix": "kegg.disease",
      "provider_url": "http://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.disease/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.DISEASE"
    }
  },
  "kegg.drug": {
    "mappings": {
      "miriam": "kegg.drug",
      "n2t": "kegg.drug",
      "prefixcommons": "KEGG.DRUG"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.",
      "homepage": "https://www.genome.jp/kegg/drug/",
      "id": "00000025",
      "name": "KEGG Drug",
      "namespaceEmbeddedInLui": false,
      "pattern": "^D\\d+$",
      "prefix": "kegg.drug",
      "provider_url": "https://www.kegg.jp/entry/$1",
      "sampleId": "D00123"
    },
    "n2t": {
      "description": "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.",
      "example": "D00123",
      "homepage": "https://www.genome.jp/kegg/drug/",
      "name": "KEGG DRUG Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^D\\d+$",
      "prefix": "kegg.drug",
      "provider_url": "https://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.drug/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.DRUG"
    },
    "synonyms": [
      "KEGG.DRUG",
      "KEGG DRUG"
    ],
    "wikidata": {
      "prefix": "P665"
    }
  },
  "kegg.environ": {
    "mappings": {
      "miriam": "kegg.environ",
      "n2t": "kegg.environ",
      "prefixcommons": "KEGG.ENVIRON"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.",
      "homepage": "http://www.genome.jp/kegg/drug/environ.html",
      "id": "00000389",
      "name": "KEGG Environ",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(ev\\:)?E\\d+$",
      "prefix": "kegg.environ",
      "provider_url": "http://www.kegg.jp/entry/$1",
      "sampleId": "ev:E00032"
    },
    "n2t": {
      "description": "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.",
      "example": "ev:E00032",
      "homepage": "http://www.genome.jp/kegg/drug/environ.html",
      "name": "KEGG ENVIRON Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(ev\\:)?E\\d+$",
      "prefix": "kegg.environ",
      "provider_url": "http://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.environ/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.ENVIRON"
    }
  },
  "kegg.enzyme": {
    "biolink": {
      "formatter": "http://www.kegg.jp/entry/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "KEGG.ENZYME"
    },
    "go": {
      "formatter": "http://www.genome.jp/dbget-bin/www_bget?ec:$1",
      "homepage": "http://www.genome.jp/dbget-bin/www_bfind?enzyme",
      "name": "KEGG Enzyme Database",
      "prefix": "KEGG_ENZYME"
    },
    "mappings": {
      "biolink": "KEGG.ENZYME",
      "go": "KEGG_ENZYME"
    },
    "name": "KEGG Enzyme",
    "part_of": "kegg"
  },
  "kegg.genes": {
    "biolink": {
      "formatter": "http://www.kegg.jp/entry/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "KEGG.GENE"
    },
    "example": "bsu:BSU01340",
    "mappings": {
      "biolink": "KEGG.GENE",
      "miriam": "kegg.genes",
      "n2t": "kegg.genes",
      "prefixcommons": "KEGG.GENES"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.",
      "homepage": "http://www.genome.jp/kegg/genes.html",
      "id": "00000070",
      "name": "KEGG Genes",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+:[\\w\\d\\.-]*$",
      "prefix": "kegg.genes",
      "provider_url": "http://www.kegg.jp/entry/$1",
      "sampleId": "syn:ssr3451"
    },
    "n2t": {
      "description": "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.",
      "example": "syn:ssr3451",
      "homepage": "http://www.genome.jp/kegg/genes.html",
      "name": "KEGG GENES Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+:[\\w\\d\\.-]*$",
      "prefix": "kegg.genes",
      "provider_url": "http://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.genes/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.GENES"
    },
    "wikidata": {
      "prefix": "P665"
    }
  },
  "kegg.genome": {
    "example": "T06648",
    "mappings": {
      "miriam": "kegg.genome",
      "n2t": "kegg.genome",
      "prefixcommons": "KEGG.GENOME"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG Genome is a collection of organisms whose genomes have been completely sequenced.",
      "homepage": "http://www.genome.jp/kegg/catalog/org_list.html",
      "id": "00000238",
      "name": "KEGG Genome",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(T0\\d+|\\w{3,5})$",
      "prefix": "kegg.genome",
      "provider_url": "http://www.kegg.jp/entry/$1",
      "sampleId": "eco"
    },
    "n2t": {
      "description": "KEGG Genome is a collection of organisms whose genomes have been completely sequenced.",
      "example": "eco",
      "homepage": "http://www.genome.jp/kegg/catalog/org_list.html",
      "name": "KEGG Genome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(T0\\d+|\\w{3,5})$",
      "prefix": "kegg.genome",
      "provider_url": "http://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.genome/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.GENOME"
    },
    "synonyms": [
      "kegg_genome",
      "kegg_genomes"
    ],
    "wikidata": {
      "prefix": "P665"
    }
  },
  "kegg.glycan": {
    "mappings": {
      "miriam": "kegg.glycan",
      "n2t": "kegg.glycan",
      "prefixcommons": "KEGG.GLYCAN"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.",
      "homepage": "https://www.genome.jp/kegg/glycan/",
      "id": "00000026",
      "name": "KEGG Glycan",
      "namespaceEmbeddedInLui": false,
      "pattern": "^G\\d+$",
      "prefix": "kegg.glycan",
      "provider_url": "https://www.kegg.jp/entry/$1",
      "sampleId": "G00123"
    },
    "n2t": {
      "description": "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.",
      "example": "G00123",
      "homepage": "https://www.genome.jp/kegg/glycan/",
      "name": "KEGG GLYCAN Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^G\\d+$",
      "prefix": "kegg.glycan",
      "provider_url": "https://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.glycan/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.GLYCAN"
    }
  },
  "kegg.ligand": {
    "go": {
      "formatter": "http://www.genome.jp/dbget-bin/www_bget?cpd:$1",
      "homepage": "http://www.genome.ad.jp/kegg/docs/upd_ligand.html",
      "name": "KEGG LIGAND Database",
      "prefix": "KEGG_LIGAND"
    },
    "mappings": {
      "go": "KEGG_LIGAND"
    },
    "name": "KEGG LIGAND",
    "part_of": "kegg"
  },
  "kegg.metagenome": {
    "mappings": {
      "miriam": "kegg.metagenome",
      "n2t": "kegg.metagenome",
      "prefixcommons": "KEGG.METAGENOME"
    },
    "miriam": {
      "deprecated": false,
      "description": "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.",
      "homepage": "http://www.genome.jp/kegg/catalog/org_list3.html",
      "id": "00000239",
      "name": "KEGG Metagenome",
      "namespaceEmbeddedInLui": false,
      "pattern": "^T3\\d+$",
      "prefix": "kegg.metagenome",
      "provider_url": "http://www.kegg.jp/entry/$1",
      "sampleId": "T30002"
    },
    "n2t": {
      "description": "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.",
      "example": "T30002",
      "homepage": "http://www.genome.jp/kegg/catalog/org_list3.html",
      "name": "KEGG Metagenome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^T3\\d+$",
      "prefix": "kegg.metagenome",
      "provider_url": "http://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.metagenome/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.METAGENOME"
    }
  },
  "kegg.module": {
    "mappings": {
      "miriam": "kegg.module",
      "n2t": "kegg.module",
      "prefixcommons": "KEGG.MODULE"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.",
      "homepage": "http://www.kegg.jp/kegg/module.html",
      "id": "00000474",
      "name": "KEGG Module",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([a-z]{3,5}_)?M\\d{5}$",
      "prefix": "kegg.module",
      "provider_url": "http://www.kegg.jp/entry/$1",
      "sampleId": "M00002"
    },
    "n2t": {
      "description": "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.",
      "example": "M00002",
      "homepage": "http://www.kegg.jp/kegg/module.html",
      "name": "KEGG Module at Kyoto University Bioinformatics Center",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([a-z]{3,5}_)?M\\d{5}$",
      "prefix": "kegg.module",
      "provider_url": "http://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.module/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.MODULE"
    }
  },
  "kegg.orthology": {
    "mappings": {
      "miriam": "kegg.orthology",
      "n2t": "kegg.orthology",
      "prefixcommons": "KEGG.ORTHOLOGY"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.",
      "homepage": "http://www.genome.jp/kegg/ko.html",
      "id": "00000116",
      "name": "KEGG Orthology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^K\\d+$",
      "prefix": "kegg.orthology",
      "provider_url": "http://www.kegg.jp/entry/$1",
      "sampleId": "K00001"
    },
    "n2t": {
      "description": "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.",
      "example": "K00001",
      "homepage": "http://www.genome.jp/kegg/ko.html",
      "name": "KEGG Orthology Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^K\\d+$",
      "prefix": "kegg.orthology",
      "provider_url": "http://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://identifiers.org/kegg.orthology/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "KEGG.ORTHOLOGY"
    }
  },
  "kegg.pathway": {
    "example": "rsk00410",
    "go": {
      "formatter": "http://www.genome.jp/dbget-bin/www_bget?path:$1",
      "homepage": "http://www.genome.jp/kegg/pathway.html",
      "name": "KEGG Pathways Database",
      "prefix": "KEGG_PATHWAY"
    },
    "mappings": {
      "go": "KEGG_PATHWAY",
      "miriam": "kegg.pathway",
      "n2t": "kegg.pathway",
      "prefixcommons": "KEGG-path"
    },
    "miriam": {
      "deprecated": false,
      "description": "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.",
      "homepage": "https://www.genome.jp/kegg/pathway.html",
      "id": "00000012",
      "name": "KEGG Pathway",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{2,4}\\d{5}$",
      "prefix": "kegg.pathway",
      "provider_url": "https://www.kegg.jp/entry/$1",
      "sampleId": "hsa00620"
    },
    "n2t": {
      "description": "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.",
      "example": "hsa00620",
      "homepage": "https://www.genome.jp/kegg/pathway.html",
      "name": "KEGG PATHWAY Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{2,4}\\d{5}$",
      "prefix": "kegg.pathway",
      "provider_url": "https://www.kegg.jp/entry/$1"
    },
    "part_of": "kegg",
    "prefixcommons": {
      "formatter": "http://www.kegg.jp/dbget-bin/www_bget?path:$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "KEGG-path"
    },
    "synonyms": [
      "KEGG_PATHWAY",
      "KEGG-path"
    ],
    "wikidata": {
      "prefix": "P665"
    }
  },
  "kegg.reaction": {
    "go": {
      "formatter": "http://www.genome.jp/dbget-bin/www_bget?rn:$1",
      "homepage": "http://www.genome.jp/kegg/reaction/",
      "name": "KEGG Reaction Database",
      "prefix": "KEGG_REACTION"
    },
    "mappings": {
      "go": "KEGG_REACTION",
      "miriam": "kegg.reaction",
      "n2t": "kegg.reaction",
      "prefixcommons": "KEGG.REACTION",
      "wikidata": "P665"
    },
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      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+\\d+$",
      "prefix": "lipidbank",
      "provider_url": "http://lipidbank.jp/cgi-bin/detail.cgi?id=$1",
      "sampleId": "BBA0001"
    },
    "n2t": {
      "description": "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.",
      "example": "BBA0001",
      "homepage": "http://lipidbank.jp/index.html",
      "name": "LipidBank the Lipid database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+\\d+$",
      "prefix": "lipidbank",
      "provider_url": "http://lipidbank.jp/cgi-bin/detail.cgi?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/lipidbank/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "LIPIDBANK"
    }
  },
  "lipidmaps": {
    "mappings": {
      "miriam": "lipidmaps",
      "n2t": "lipidmaps",
      "prefixcommons": "LIPIDMAPS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.",
      "homepage": "http://www.lipidmaps.org",
      "id": "00000052",
      "name": "LIPID MAPS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$",
      "prefix": "lipidmaps",
      "provider_url": "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1",
      "sampleId": "LMPR0102010012"
    },
    "n2t": {
      "description": "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.",
      "example": "LMPR0102010012",
      "homepage": "http://www.lipidmaps.org",
      "name": "Department of Bioengineering and the San Diego Supercomputer Center",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$",
      "prefix": "lipidmaps",
      "provider_url": "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/lipidmaps/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "LIPIDMAPS"
    },
    "synonyms": [
      "LIPID_MAPS_instance",
      "LIPID MAPS",
      "LIPID_MAPS_class"
    ],
    "wikidata": {
      "prefix": "P2063"
    }
  },
  "lipro": {
    "bioportal": {
      "name": "Lipid Ontology",
      "prefix": "LIPRO"
    },
    "mappings": {
      "bioportal": "LIPRO",
      "obofoundry": "lipro",
      "prefixcommons": "LIPRO"
    },
    "obofoundry": {
      "contact": "bakerc@unb.ca",
      "contact.label": "Christipher Baker",
      "deprecated": true,
      "description": "An ontology representation of the LIPIDMAPS nomenclature classification.",
      "name": "Lipid Ontology",
      "prefix": "lipro"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/LIPRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "LIPRO"
    }
  },
  "lncipedia": {
    "description": "A comprehensive compendium of human long non-coding RNAs",
    "example": "SNHG3",
    "name": "LNCipedia"
  },
  "loggerhead": {
    "mappings": {
      "obofoundry": "loggerhead",
      "prefixcommons": "LOGGERHEAD"
    },
    "obofoundry": {
      "contact": "peteremidford@yahoo.com",
      "contact.label": "Peter Midford",
      "deprecated": true,
      "homepage": "http://www.mesquiteproject.org/ontology/Loggerhead/index.html",
      "name": "Loggerhead nesting",
      "prefix": "loggerhead"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/LOGGERHEAD_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "LOGGERHEAD"
    }
  },
  "loinc": {
    "biolink": {
      "formatter": "http://loinc.org/rdf/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "LOINC"
    },
    "bioportal": {
      "name": "Logical Observation Identifier Names and Codes",
      "prefix": "LOINC"
    },
    "example": "LL379-9",
    "homepage": "https://loinc.org/",
    "mappings": {
      "biolink": "LOINC",
      "bioportal": "LOINC"
    },
    "name": "Logical Observation Identifiers Names and Codes",
    "url": "https://loinc.org/$1/"
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  "lrg": {
    "mappings": {
      "miriam": "lrg",
      "n2t": "lrg",
      "prefixcommons": "LRG"
    },
    "miriam": {
      "deprecated": false,
      "description": "A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI.",
      "homepage": "http://www.lrg-sequence.org/",
      "id": "00000376",
      "name": "Locus Reference Genomic",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LRG_\\d+$",
      "prefix": "lrg",
      "provider_url": "ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml",
      "sampleId": "LRG_1"
    },
    "n2t": {
      "description": "Locus Reference Genomic (LRG) provides identifiers to stable genomic DNA sequences for regions of the human genome, providing a recognized reference-sequence standard for reporting sequence variants. LRG is maintained by the NCBI and the European Bioinformatics Institute (EBI).",
      "example": "LRG_1",
      "homepage": "http://uswest.ensembl.org/",
      "name": "Locus Reference Genomic through Ensembl mirror (US west)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LRG_\\d+$",
      "prefix": "lrg",
      "provider_url": "http://uswest.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/lrg/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "LRG"
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  },
  "lspci": {
    "example": "1",
    "homepage": "https://labsyspharm.github.io/lspci/",
    "name": "Laboratory of Systems Pharmacology Compound ID",
    "pattern": "^\\d+$",
    "url": "https://labsyspharm.github.io/lspci/$1"
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  "ma": {
    "bioportal": {
      "name": "Mouse Adult Gross Anatomy Ontology",
      "prefix": "MA"
    },
    "go": {
      "description": "Adult Mouse Anatomical Dictionary; part of Gene Expression Database",
      "formatter": "http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$1",
      "homepage": "http://www.informatics.jax.org/",
      "name": "Adult Mouse Anatomical Dictionary",
      "prefix": "MA"
    },
    "mappings": {
      "bioportal": "MA",
      "go": "MA",
      "miriam": "ma",
      "n2t": "ma",
      "obofoundry": "ma",
      "ols": "ma",
      "prefixcommons": "MA"
    },
    "miriam": {
      "deprecated": false,
      "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)",
      "homepage": "http://www.informatics.jax.org/",
      "id": "00000445",
      "name": "Mouse Adult Gross Anatomy",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MA:\\d+$",
      "prefix": "ma",
      "provider_url": "http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$1",
      "sampleId": "0002502"
    },
    "n2t": {
      "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)",
      "example": "0002502",
      "homepage": "http://www.informatics.jax.org/",
      "name": "Mouse Adult Gross Anatomy at The Jackson Laboratory",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MA:\\d+$",
      "prefix": "ma",
      "provider_url": "http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$1"
    },
    "obofoundry": {
      "contact": "Terry.Hayamizu@jax.org",
      "contact.label": "Terry Hayamizu",
      "deprecated": false,
      "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus).",
      "download.obo": "http://purl.obolibrary.org/obo/ma.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ma.owl",
      "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
      "license": "CC-BY 4.0",
      "name": "Mouse adult gross anatomy",
      "prefix": "ma"
    },
    "ols": {
      "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus).",
      "download": "http://purl.obolibrary.org/obo/ma.owl",
      "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
      "name": "Mouse adult gross anatomy",
      "prefix": "ma",
      "version": "2017-02-07",
      "version.iri": "http://purl.obolibrary.org/obo/ma/releases/2017-02-07/ma.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MA"
    }
  },
  "macie": {
    "mappings": {
      "miriam": "macie",
      "n2t": "macie",
      "prefixcommons": "MACIE"
    },
    "miriam": {
      "deprecated": false,
      "description": "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.",
      "homepage": "https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html",
      "id": "00000077",
      "name": "MACiE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^M\\d{4}$",
      "prefix": "macie",
      "provider_url": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1",
      "sampleId": "M0001"
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    "n2t": {
      "description": "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.",
      "example": "M0001",
      "homepage": "https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html",
      "name": "MACiE database of mechanisms, annotation and classification in enzymes",
      "namespaceEmbeddedInLui": false,
      "pattern": "^M\\d{4}$",
      "prefix": "macie",
      "provider_url": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1"
    },
    "name": "Mechanism, Annotation and Classification in Enzymes",
    "prefixcommons": {
      "formatter": "http://identifiers.org/macie/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MACIE"
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  },
  "maizegdb.locus": {
    "go": {
      "formatter": "https://www.maizegdb.org/gene_center/gene/$1",
      "homepage": "https://www.maizegdb.org/",
      "name": "MaizeGDB",
      "prefix": "MaizeGDB_Locus"
    },
    "mappings": {
      "go": "MaizeGDB_Locus",
      "miriam": "maizegdb.locus",
      "n2t": "maizegdb.locus",
      "prefixcommons": "MAIZEGDB.LOCUS"
    },
    "miriam": {
      "deprecated": false,
      "description": "MaizeGDB is the maize research community's central repository for genetics and genomics information.",
      "homepage": "http://www.maizegdb.org/",
      "id": "00000177",
      "name": "MaizeGDB Locus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "maizegdb.locus",
      "provider_url": "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1",
      "sampleId": "25011"
    },
    "n2t": {
      "description": "MaizeGDB is the maize research community's central repository for genetics and genomics information.",
      "example": "25011",
      "homepage": "http://www.maizegdb.org/",
      "name": "MaizeGDB at Missouri",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "maizegdb.locus",
      "provider_url": "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1"
    },
    "name": "MaizeGDB Locus",
    "prefixcommons": {
      "formatter": "http://identifiers.org/maizegdb.locus/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MAIZEGDB.LOCUS"
    }
  },
  "mamo": {
    "bioportal": {
      "name": "Mathematical Modelling Ontology",
      "prefix": "MAMO"
    },
    "mappings": {
      "bioportal": "MAMO",
      "miriam": "mamo",
      "n2t": "mamo",
      "obofoundry": "mamo",
      "ols": "mamo",
      "prefixcommons": "MAMO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/mamo",
      "id": "00000517",
      "name": "Mathematical Modelling Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MAMO_\\d{7}$",
      "prefix": "mamo",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?short_form=$1",
      "sampleId": "MAMO_0000026"
    },
    "n2t": {
      "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.",
      "example": "MAMO_0000026",
      "homepage": "http://bioportal.bioontology.org/ontologies/MAMO",
      "name": "MAMO through BioPortal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MAMO_\\d{7}$",
      "prefix": "mamo",
      "provider_url": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/$1"
    },
    "obofoundry": {
      "contact": "n.lenovere@gmail.com",
      "contact.label": "Nicolas Le Novere",
      "deprecated": false,
      "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.",
      "download.owl": "http://purl.obolibrary.org/obo/mamo.owl",
      "homepage": "http://sourceforge.net/p/mamo-ontology/wiki/Home/",
      "license": "Artistic License 2.0",
      "name": "Mathematical modeling ontology",
      "prefix": "mamo"
    },
    "ols": {
      "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.",
      "download": "http://purl.obolibrary.org/obo/mamo.owl",
      "homepage": "http://sourceforge.net/p/mamo-ontology/wiki/Home/",
      "name": "Mathematical Modelling Ontology",
      "prefix": "mamo",
      "version": "2020-08-24"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MAMO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MAMO"
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  },
  "mao": {
    "mappings": {
      "obofoundry": "mao",
      "prefixcommons": "MAO"
    },
    "obofoundry": {
      "contact": "julie@igbmc.u-strasbg.fr",
      "contact.label": "Julie Thompson",
      "deprecated": true,
      "homepage": "http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html",
      "name": "Multiple alignment",
      "prefix": "mao"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MAO"
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  },
  "massbank": {
    "mappings": {
      "miriam": "massbank",
      "n2t": "massbank",
      "prefixcommons": "MASSBANK"
    },
    "miriam": {
      "deprecated": false,
      "description": "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).",
      "homepage": "http://www.massbank.jp",
      "id": "00000273",
      "name": "MassBank",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{2}[A-Z0-9][0-9]{5}$",
      "prefix": "massbank",
      "provider_url": "http://www.massbank.jp/RecordDisplay?id=$1",
      "sampleId": "PB000166"
    },
    "n2t": {
      "description": "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).",
      "example": "PB000166",
      "homepage": "http://www.massbank.jp",
      "name": "MassBank in Japan",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]{2}[A-Z0-9][0-9]{5}$",
      "prefix": "massbank",
      "provider_url": "http://www.massbank.jp/jsp/FwdRecord.jsp?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/massbank/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MASSBANK"
    },
    "wikidata": {
      "database": "Q24088019",
      "prefix": "P6689"
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  },
  "massive": {
    "mappings": {
      "fairsharing": "FAIRsharing.LYsiMd",
      "miriam": "massive",
      "n2t": "massive",
      "prefixcommons": "MASSIVE",
      "uniprot": "MassIVE",
      "uniprot.database": "MassIVE"
    },
    "miriam": {
      "deprecated": false,
      "description": "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.",
      "homepage": "https://www.omicsdi.org/",
      "id": "00000650",
      "name": "MassIVE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MSV\\d+$",
      "prefix": "massive",
      "provider_url": "https://www.omicsdi.org/dataset/massive/$1",
      "sampleId": "MSV000082131"
    },
    "n2t": {
      "description": "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.",
      "example": "MSV000082131",
      "homepage": "https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp",
      "name": "MassIVE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MSV\\d+$",
      "prefix": "massive",
      "provider_url": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/massive/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MASSIVE"
    },
    "uniprot": {
      "category": "Proteomic databases",
      "formatter": "https://massive.ucsd.edu/ProteoSAFe/protein_explorer.jsp?libraries=2&protein_name=%u",
      "identifier": "241",
      "link_is_explicit": "true",
      "name": "MassIVE - Mass Spectrometry Interactive Virtual Environment",
      "prefix": "MassIVE"
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  },
  "mat": {
    "bioportal": {
      "name": "Minimal Anatomical Terminology",
      "prefix": "MAT"
    },
    "mappings": {
      "bioportal": "MAT",
      "obofoundry": "mat",
      "prefixcommons": "MAT"
    },
    "name": "Minimal Anatomical Terminology",
    "obofoundry": {
      "contact": "j.bard@ed.ac.uk",
      "contact.label": "Jonathan Bard",
      "deprecated": true,
      "name": "Minimal anatomical terminology",
      "prefix": "mat"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MAT_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MAT"
    }
  },
  "matrixdb": {
    "appears_in": [
      "complexportal"
    ],
    "example": "MULT_4_VAR1_bovine",
    "homepage": "http://matrixdb.univ-lyon1.fr/",
    "name": "MatrixDB",
    "url": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1"
  },
  "matrixdb.association": {
    "mappings": {
      "miriam": "matrixdb.association",
      "n2t": "matrixdb.association",
      "prefixcommons": "MATRIXDB.ASSOCIATION"
    },
    "miriam": {
      "deprecated": false,
      "description": "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.",
      "homepage": "http://matrixdb.univ-lyon1.fr/",
      "id": "00000068",
      "name": "MatrixDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$",
      "prefix": "matrixdb.association",
      "provider_url": "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association",
      "sampleId": "P00747__P07355"
    },
    "n2t": {
      "description": "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.",
      "example": "P00747__P07355",
      "homepage": "http://matrixdb.univ-lyon1.fr/",
      "name": "MatrixDB Association",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$",
      "prefix": "matrixdb.association",
      "provider_url": "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association"
    },
    "name": "MatrixDB Association",
    "prefixcommons": {
      "formatter": "http://identifiers.org/matrixdb.association/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MATRIXDB.ASSOCIATION"
    }
  },
  "maxo": {
    "bioportal": {
      "name": "Medical Action Ontology",
      "prefix": "MAXO"
    },
    "mappings": {
      "bioportal": "MAXO",
      "obofoundry": "maxo",
      "ols": "maxo"
    },
    "obofoundry": {
      "contact": "Leigh.Carmody@jax.org",
      "contact.label": "Leigh Carmody",
      "deprecated": false,
      "description": "Medical Action Ontology is an ontology...",
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      "download.obo": "http://purl.obolibrary.org/obo/maxo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/maxo.owl",
      "homepage": "https://github.com/monarch-initiative/MAxO",
      "license": "CC-BY",
      "name": "Medical Action Ontology",
      "prefix": "maxo"
    },
    "ols": {
      "description": "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.",
      "download": "http://purl.obolibrary.org/obo/maxo.owl",
      "homepage": "https://github.com/monarch-initiative/MAxO",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Medical Action Ontology",
      "prefix": "maxo",
      "version": "2021-06-11",
      "version.iri": "http://purl.obolibrary.org/obo/maxo/releases/2021-06-11/maxo.owl"
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  },
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      "prefix": "MCCL"
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    "deprecated": true,
    "mappings": {
      "bioportal": "MCCL"
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    "name": "Cell Line Ontology [derivative]"
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      "name": "Microbial Conditions Ontology",
      "prefix": "MCO"
    },
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      "bioportal": "MCO",
      "obofoundry": "mco",
      "ols": "mco"
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      "contact.label": "Citlalli Mejía-Almonte",
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      "download.owl": "http://purl.obolibrary.org/obo/mco.owl",
      "homepage": "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology",
      "license": "CC-BY",
      "name": "Microbial Conditions Ontology",
      "prefix": "mco"
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      "name": "Microbial Conditions Ontology",
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      "version.iri": "http://purl.obolibrary.org/obo/mco/releases/2019-05-15/mco.owl"
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      "deprecated": false,
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      "is_obo": false,
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      "homepage": "http://bioportal.bioontology.org/ontologies/MEDDRA",
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      "prefix": "meddra",
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      "prefix": "MEDDRA"
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    "synonyms": [
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      "prefix": "medlineplus",
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    "prefixcommons": {
      "formatter": "http://identifiers.org/medlineplus/$1",
      "is_identifiers": true,
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      "formatter": "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1",
      "homepage": "https://www.ebi.ac.uk/merops/",
      "name": "MEROPS peptidase database",
      "prefix": "MEROPS"
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    "mappings": {
      "go": "MEROPS",
      "miriam": "merops",
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      "uniprot.database": "MEROPS"
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    "miriam": {
      "deprecated": false,
      "description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.",
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      "name": "MEROPS",
      "namespaceEmbeddedInLui": false,
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      "is_obo": false,
      "prefix": "MEROPS"
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    "uniprot": {
      "category": "Protein family/group databases",
      "formatter": "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?mid=%s",
      "identifier": "59",
      "link_is_explicit": "true",
      "name": "MEROPS protease database",
      "prefix": "MEROPS"
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      "n2t": "merops.family",
      "prefixcommons": "MEROPS.FAMILY"
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    "miriam": {
      "deprecated": false,
      "description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.",
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      "id": "00000302",
      "name": "MEROPS Family",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[SCTAGMNU]\\d+$",
      "prefix": "merops.family",
      "provider_url": "http://merops.sanger.ac.uk/cgi-bin/famsum?family=$1",
      "sampleId": "S1"
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    "n2t": {
      "description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.",
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      "homepage": "http://merops.sanger.ac.uk/index.htm",
      "name": "Merops Family at Sanger Institute",
      "namespaceEmbeddedInLui": false,
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      "prefix": "merops.family",
      "provider_url": "http://merops.sanger.ac.uk/cgi-bin/famsum?family=$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/merops.family/$1",
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      "is_obo": false,
      "prefix": "MEROPS.FAMILY"
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      "miriam": "merops.inhibitor",
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      "prefixcommons": "MEROPS.INHIBITOR"
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    "miriam": {
      "deprecated": false,
      "description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.",
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      "name": "MEROPS Inhibitor",
      "namespaceEmbeddedInLui": false,
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      "prefix": "merops.inhibitor",
      "provider_url": "http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$1",
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    "n2t": {
      "description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.",
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    "bioportal": {
      "name": "Medical Subject Headings",
      "prefix": "MESH"
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    "cellosaurus": {
      "category": "Ontologies",
      "homepage": "https://www.ncbi.nlm.nih.gov/mesh",
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      "url": "https://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?field=uid&term=$1"
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      "name": "Medical Subject Headings",
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      "synonyms": [
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    "name": "Medical Subject Headings",
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      "is_obo": true,
      "prefix": "MESH"
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    "synonyms": [
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    "url": "https://meshb.nlm.nih.gov/record/ui?ui=$1",
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      "name": "MeSH descriptor ID",
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      "prefix": "P486"
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    "miriam": {
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      "description": "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.",
      "example": "2442292",
      "homepage": "http://www.informatics.jax.org/",
      "name": "Mouse Genome Informatics Database",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MGI:\\d+$",
      "prefix": "mgi",
      "provider_url": "http://www.informatics.jax.org/accession/MGI:$1"
    },
    "ncbi": {
      "example": "MGI:1894891",
      "homepage": "http://www.informatics.jax.org/",
      "name": "Mouse Genome Informatics",
      "prefix": "MGI"
    },
    "prefixcommons": {
      "formatter": "http://www.informatics.jax.org/accession/MGI:$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "MGI"
    },
    "synonyms": [
      "MGI",
      "MGD"
    ],
    "uniprot": {
      "category": "Organism-specific databases",
      "comment": "Replacement for MGD",
      "formatter": "http://www.informatics.jax.org/marker/%s",
      "identifier": "60",
      "link_is_explicit": "true",
      "name": "Mouse genome database (MGD) from Mouse Genome Informatics (MGI)",
      "prefix": "MGI"
    },
    "wikidata": {
      "database": "Q1951035",
      "prefix": "P671"
    }
  },
  "mgnify.analysis": {
    "description": "Analyses of microbiome data within MGnify",
    "example": "MGYA00002270",
    "homepage": "https://www.ebi.ac.uk/metagenomics/",
    "name": "MGnify Analysis",
    "pattern": "^MGYA\\d+$",
    "url": "https://www.ebi.ac.uk/metagenomics/analyses/$1"
  },
  "mgnify.proj": {
    "mappings": {
      "miriam": "mgnify.proj",
      "n2t": "mgnify.proj"
    },
    "miriam": {
      "deprecated": false,
      "description": "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.",
      "homepage": "https://www.ebi.ac.uk/metagenomics",
      "id": "00000535",
      "name": "MGnify Project",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]+[0-9]+$",
      "prefix": "mgnify.proj",
      "provider_url": "https://www.ebi.ac.uk/metagenomics/projects/$1",
      "sampleId": "ERP004492"
    },
    "n2t": {
      "description": "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.",
      "example": "ERP004492",
      "homepage": "https://www.ebi.ac.uk/metagenomics",
      "name": "MGnify Project",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]+[0-9]+$",
      "prefix": "mgnify.proj",
      "provider_url": "https://www.ebi.ac.uk/metagenomics/projects/$1"
    }
  },
  "mgnify.samp": {
    "mappings": {
      "miriam": "mgnify.samp",
      "n2t": "mgnify.samp"
    },
    "miriam": {
      "deprecated": false,
      "description": "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.",
      "homepage": "https://www.ebi.ac.uk/metagenomics",
      "id": "00000510",
      "name": "MGnify Sample",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]+[0-9]+$",
      "prefix": "mgnify.samp",
      "provider_url": "https://www.ebi.ac.uk/metagenomics/samples/$1",
      "sampleId": "SRS086444"
    },
    "n2t": {
      "description": "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.",
      "example": "SRS086444",
      "homepage": "https://www.ebi.ac.uk/metagenomics",
      "name": "MGnify Sample",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]+[0-9]+$",
      "prefix": "mgnify.samp",
      "provider_url": "https://www.ebi.ac.uk/metagenomics/samples/$1"
    }
  },
  "mi": {
    "biolink": {
      "formatter": "http://purl.obolibrary.org/obo/MI_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MI"
    },
    "bioportal": {
      "name": "Molecular Interactions",
      "prefix": "MI"
    },
    "example": "0058",
    "go": {
      "homepage": "http://www.psidev.info/",
      "name": "Proteomic Standard Initiative for Molecular Interaction",
      "prefix": "PSI-MI",
      "synonyms": [
        "MI"
      ]
    },
    "mappings": {
      "biolink": "MI",
      "bioportal": "MI",
      "go": "PSI-MI",
      "miriam": "mi",
      "n2t": "psimi",
      "obofoundry": "mi",
      "ols": "mi",
      "prefixcommons": "MI"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/mi",
      "id": "00000109",
      "name": "Molecular Interactions Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MI:\\d{4}$",
      "prefix": "mi",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:$1",
      "sampleId": "0308"
    },
    "n2t": {
      "description": "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.",
      "example": "0308",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/mi",
      "name": "Molecular Interactions Ontology through OLS",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MI:\\d{4}$",
      "prefix": "psimi",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:$1"
    },
    "obofoundry": {
      "contact": "pporras@ebi.ac.uk",
      "contact.label": "Pablo Porras Millán",
      "deprecated": false,
      "description": "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.",
      "download.obo": "http://purl.obolibrary.org/obo/mi.obo",
      "download.owl": "http://purl.obolibrary.org/obo/mi.owl",
      "homepage": "https://github.com/HUPO-PSI/psi-mi-CV",
      "license": "CC BY 4.0",
      "name": "Molecular Interactions Controlled Vocabulary",
      "prefix": "mi"
    },
    "ols": {
      "description": "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.",
      "download": "https://raw.githubusercontent.com/HUPO-PSI/psi-mi-CV/master/psi-mi.obo",
      "homepage": "https://github.com/HUPO-PSI/psi-mi-CV",
      "name": "Molecular Interactions Controlled Vocabulary",
      "prefix": "mi",
      "version": "2020-04-13",
      "version.iri": "http://purl.obolibrary.org/obo/mi/releases/2020-04-13/mi.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MI_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MI"
    },
    "synonyms": [
      "PSI-MI"
    ]
  },
  "miaa": {
    "comment": "same as MAT",
    "name": "Minimal Information About Anatomy ontology",
    "references": [
      "https://bioconductor.statistik.tu-dortmund.de/packages/3.1/bioc/vignettes/rols/inst/doc/rols.pdf"
    ]
  },
  "miapa": {
    "bioportal": {
      "name": "MIAPA Ontology",
      "prefix": "MIAPA"
    },
    "mappings": {
      "bioportal": "MIAPA",
      "obofoundry": "miapa",
      "ols": "miapa",
      "prefixcommons": "MIAPA"
    },
    "obofoundry": {
      "contact": "hilmar.lapp@duke.edu",
      "contact.label": "Hilmar Lapp",
      "deprecated": false,
      "description": "An application ontology to formalize annotation of phylogenetic data.",
      "download.owl": "http://purl.obolibrary.org/obo/miapa.owl",
      "homepage": "http://www.evoio.org/wiki/MIAPA",
      "license": "CC-0",
      "name": "MIAPA Ontology",
      "prefix": "miapa"
    },
    "ols": {
      "description": "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA.",
      "download": "http://purl.obolibrary.org/obo/miapa.owl",
      "homepage": "http://www.evoio.org/wiki/MIAPA",
      "name": "Minimum Information for A Phylogenetic Analysis (MIAPA) Ontology",
      "prefix": "miapa",
      "version": "2017-05-09",
      "version.iri": "http://purl.obolibrary.org/obo/miapa/2013-02-01/miapa.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MIAPA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MIAPA"
    }
  },
  "micro": {
    "mappings": {
      "obofoundry": "micro",
      "ols": "micro",
      "prefixcommons": "MICRO"
    },
    "obofoundry": {
      "contact": "carrine.blank@umontana.edu",
      "contact.label": "Carrine Blank",
      "deprecated": false,
      "description": "An ontology of prokaryotic phenotypic and metabolic characters",
      "download.owl": "http://purl.obolibrary.org/obo/micro.owl",
      "homepage": "https://github.com/carrineblank/MicrO",
      "license": "CC-BY 2.0",
      "name": "Ontology of Prokaryotic Phenotypic and Metabolic Characters",
      "prefix": "micro"
    },
    "ols": {
      "description": "An ontology of prokaryotic phenotypic and metabolic characters",
      "download": "http://purl.obolibrary.org/obo/micro.owl",
      "homepage": "https://github.com/carrineblank/MicrO",
      "name": "Ontology of Prokaryotic Phenotypic and Metabolic Characters",
      "prefix": "micro",
      "version": "1.5.1"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MICRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MICRO"
    }
  },
  "microscope": {
    "mappings": {
      "miriam": "microscope",
      "n2t": "microscope",
      "prefixcommons": "MICROSCOPE"
    },
    "miriam": {
      "deprecated": false,
      "description": "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.",
      "homepage": "http://www.genoscope.cns.fr/agc/microscope",
      "id": "00000631",
      "name": "MicroScope",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "microscope",
      "provider_url": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1",
      "sampleId": "5601141"
    },
    "n2t": {
      "description": "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.",
      "example": "5601141",
      "homepage": "http://www.genoscope.cns.fr/agc/microscope",
      "name": "MicroScope",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "microscope",
      "provider_url": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/microscope/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MICROSCOPE"
    }
  },
  "microsporidia": {
    "mappings": {
      "miriam": "microsporidia",
      "n2t": "microsporidia",
      "prefixcommons": "MICROSPORIDIA"
    },
    "miriam": {
      "deprecated": false,
      "description": "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "http://microsporidiadb.org/micro/",
      "id": "00000152",
      "name": "MicrosporidiaDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "microsporidia",
      "provider_url": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1",
      "sampleId": "ECU03_0820i"
    },
    "n2t": {
      "description": "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "ECU03_0820i",
      "homepage": "http://microsporidiadb.org/micro/",
      "name": "MicrosporidiaDB at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "microsporidia",
      "provider_url": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/microsporidia/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MICROSPORIDIA"
    }
  },
  "mim": {
    "bioportal": {
      "name": "Molecular Interaction Map",
      "prefix": "MIM"
    },
    "go": {
      "formatter": "https://omim.org/entry/$1",
      "homepage": "https://omim.org/",
      "name": "Mendelian Inheritance in Man",
      "prefix": "OMIM",
      "synonyms": [
        "MIM"
      ]
    },
    "mappings": {
      "bioportal": "MIM",
      "go": "OMIM",
      "miriam": "mim",
      "n2t": "mim",
      "ncbi": "MIM",
      "prefixcommons": "OMIM",
      "uniprot": "MIM",
      "uniprot.database": "MIM",
      "wikidata": "P492"
    },
    "miriam": {
      "deprecated": false,
      "description": "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.",
      "homepage": "https://omim.org/",
      "id": "00000016",
      "name": "OMIM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[*#+%^]?\\d{6}$",
      "prefix": "mim",
      "provider_url": "https://omim.org/entry/$1",
      "sampleId": "603903"
    },
    "n2t": {
      "description": "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.",
      "example": "603903",
      "homepage": "https://omim.org/",
      "name": "OMIM at John Hopkins",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[*#+%^]?\\d{6}$",
      "prefix": "mim",
      "provider_url": "https://omim.org/entry/$1"
    },
    "ncbi": {
      "example": "123456",
      "homepage": "https://www.ncbi.nlm.nih.gov/omim",
      "name": "Mendelian Inheritance in Man numbers",
      "prefix": "MIM"
    },
    "pattern": "^\\d+$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OMIM_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OMIM"
    },
    "synonyms": [
      "OMIM"
    ],
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://www.omim.org/entry/%s",
      "identifier": "62",
      "link_is_explicit": "true",
      "name": "Online Mendelian Inheritance in Man (OMIM)",
      "prefix": "MIM"
    },
    "wikidata": {
      "database": "Q241953",
      "database.homepage": "https://www.omim.org",
      "database.label": "Online Mendelian Inheritance in Man",
      "format": "https://omim.org/entry/$1",
      "name": "OMIM ID",
      "pattern": "\\d{6}",
      "prefix": "P492"
    }
  },
  "mim.ps": {
    "description": "A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome.",
    "example": "PS214100",
    "homepage": "https://www.omim.org/phenotypicSeriesTitles/all",
    "name": "OMIM Phenotypic Series",
    "synonyms": [
      "OMIMPS",
      "PS"
    ],
    "url": "https://omim.org/phenotypicSeries/$1"
  },
  "mimodb": {
    "mappings": {
      "miriam": "mimodb",
      "n2t": "mimodb",
      "prefixcommons": "MIMODB"
    },
    "miriam": {
      "deprecated": false,
      "description": "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.",
      "homepage": "http://immunet.cn/bdb/",
      "id": "00000251",
      "name": "MimoDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "mimodb",
      "provider_url": "http://immunet.cn/bdb/index.php/mimoset/$1",
      "sampleId": "1"
    },
    "n2t": {
      "description": "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.",
      "example": "1",
      "homepage": "http://immunet.cn/bdb/",
      "name": "BDB at University of Electronic Science and Technology of China",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "mimodb",
      "provider_url": "http://immunet.cn/bdb/index.php/mimoset/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mimodb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIMODB"
    }
  },
  "minid": {
    "mappings": {
      "miriam": "minid",
      "n2t": "minid",
      "prefixcommons": "MINID"
    },
    "miriam": {
      "deprecated": false,
      "description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.",
      "homepage": "https://fair-research.org",
      "id": "00000645",
      "name": "Minimal Viable Identifier",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "minid",
      "provider_url": "https://hdl.handle.net/hdl:20.500.12582/$1",
      "sampleId": "b97957"
    },
    "n2t": {
      "description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.",
      "example": "b97957",
      "homepage": "http://minid.bd2k.org",
      "name": "Minimal Identifiers for Transient Data",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "minid",
      "provider_url": "http://n2t.net/ark:/57799/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/minid/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MINID"
    }
  },
  "minid.test": {
    "mappings": {
      "miriam": "minid.test"
    },
    "miriam": {
      "deprecated": false,
      "description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. ",
      "homepage": "https://fair-research.org",
      "id": "00000707",
      "name": "MINID Test",
      "namespaceEmbeddedInLui": false,
      "pattern": "[A-Za-z0-9]+$",
      "prefix": "minid.test",
      "provider_url": "https://hdl.handle.net/hdl:20.500.12633/$1",
      "sampleId": "3SBPLMKKVEVR"
    }
  },
  "mint": {
    "mappings": {
      "miriam": "mint",
      "n2t": "mint",
      "prefixcommons": "MINT",
      "uniprot": "MINT",
      "uniprot.database": "MINT"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.",
      "homepage": "https://www.ebi.ac.uk/intact/",
      "id": "00000042",
      "name": "MINT",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MINT\\-\\d{1,7}$",
      "prefix": "mint",
      "provider_url": "https://www.ebi.ac.uk/intact/query/interaction_id:$1",
      "sampleId": "MINT-10000"
    },
    "n2t": {
      "description": "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.",
      "example": "MINT-7905142",
      "homepage": "https://www.ebi.ac.uk/intact/",
      "name": "MINT subset through IntAct",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MINT\\-\\d{1,7}$",
      "prefix": "mint",
      "provider_url": "https://www.ebi.ac.uk/intact/query/interaction_id:$1"
    },
    "name": "Molecular Interaction Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/mint/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MINT"
    },
    "uniprot": {
      "category": "Protein-protein interaction databases",
      "formatter": "https://mint.bio.uniroma2.it/cgi-bin/protein.py?id=%u",
      "identifier": "158",
      "link_is_explicit": "true",
      "name": "Molecular INTeraction database",
      "prefix": "MINT"
    }
  },
  "mipmod": {
    "mappings": {
      "miriam": "mipmod",
      "n2t": "mipmod",
      "prefixcommons": "MIPMOD"
    },
    "miriam": {
      "deprecated": false,
      "description": "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.",
      "homepage": "http://bioinfo.iitk.ac.in/MIPModDB",
      "id": "00000256",
      "name": "MIPModDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "mipmod",
      "provider_url": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1",
      "sampleId": "HOSAPI0399"
    },
    "n2t": {
      "description": "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.",
      "example": "HOSAPI0399",
      "homepage": "http://bioinfo.iitk.ac.in/MIPModDB",
      "name": "MIPModDB at Indian Institute of Technology Kanpur",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "mipmod",
      "provider_url": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mipmod/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIPMOD"
    }
  },
  "mir": {
    "mappings": {
      "miriam": "mir",
      "n2t": "mir",
      "prefixcommons": "MIR"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources.",
      "homepage": "https://registry.identifiers.org/registry",
      "id": "00000599",
      "name": "Identifiers.org Registry",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MIR:\\d{8}$",
      "prefix": "mir",
      "provider_url": "https://registry.identifiers.org/registry?query=\"MIR:$1\"",
      "sampleId": "00100037"
    },
    "n2t": {
      "description": "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form &#x201C;PREFIX:ACCESSION&#x201D; or \"PROVIDER/PREFIX:ACCESSION&#x201D; commonly used to specify bioinformatics and other data resources.",
      "example": "00100037",
      "homepage": "https://identifiers.org/registry",
      "name": "Identifiers.org Registry through EBI",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MIR:\\d{8}$",
      "prefix": "mir",
      "provider_url": "https://identifiers.org/registry?query=\"MIR:$1\""
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mir/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIR"
    }
  },
  "mirbase": {
    "example": "MI0026471",
    "homepage": "http://www.mirbase.org/",
    "mappings": {
      "miriam": "mirbase",
      "n2t": "mirbase",
      "ncbi": "miRBase",
      "prefixcommons": "MIRBASE",
      "wikidata": "P2870"
    },
    "miriam": {
      "deprecated": false,
      "description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).",
      "homepage": "http://www.mirbase.org/",
      "id": "00000078",
      "name": "miRBase Sequence",
      "namespaceEmbeddedInLui": false,
      "pattern": "MI\\d{7}",
      "prefix": "mirbase",
      "provider_url": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1",
      "sampleId": "MI0000001"
    },
    "n2t": {
      "description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).",
      "example": "MI0000001",
      "homepage": "http://www.mirbase.org/",
      "name": "miRBase Sequence Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "MI\\d{7}",
      "prefix": "mirbase",
      "provider_url": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"
    },
    "ncbi": {
      "example": "MI0000681",
      "homepage": "http://www.mirbase.org/",
      "name": "miRNA Database",
      "prefix": "miRBase"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mirbase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIRBASE"
    },
    "url": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1",
    "wikidata": {
      "database": "Q6826947",
      "database.homepage": "http://www.mirbase.org/",
      "database.label": "miRBase",
      "format": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1",
      "homepage": "http://www.mirbase.org/",
      "name": "miRBase pre-miRNA ID",
      "pattern": "MI\\d{7}",
      "prefix": "P2870"
    }
  },
  "mirbase.family": {
    "example": "MIPF0000002",
    "homepage": "http://www.mirbase.org/",
    "name": "miRBase Families",
    "synonyms": [
      "MIRBASE_FAMILY"
    ],
    "url": "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1",
    "wikidata": {
      "database": "Q6826947"
    }
  },
  "mirbase.mature": {
    "example": "MIMAT0046872",
    "homepage": "http://www.mirbase.org/",
    "mappings": {
      "miriam": "mirbase.mature",
      "n2t": "mirbase.mature",
      "prefixcommons": "MIRBASE.MATURE",
      "wikidata": "P2871"
    },
    "miriam": {
      "deprecated": false,
      "description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.",
      "homepage": "http://www.mirbase.org/",
      "id": "00000235",
      "name": "miRBase mature sequence",
      "namespaceEmbeddedInLui": false,
      "pattern": "MIMAT\\d{7}",
      "prefix": "mirbase.mature",
      "provider_url": "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1",
      "sampleId": "MIMAT0000001"
    },
    "n2t": {
      "description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.",
      "example": "MIMAT0000001",
      "homepage": "http://www.mirbase.org/",
      "name": "miRBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "MIMAT\\d{7}",
      "prefix": "mirbase.mature",
      "provider_url": "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mirbase.mature/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIRBASE.MATURE"
    },
    "synonyms": [
      "MIRBASEM"
    ],
    "url": "http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1",
    "wikidata": {
      "database": "Q6826947",
      "database.homepage": "http://www.mirbase.org/",
      "database.label": "miRBase",
      "format": "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1",
      "homepage": "http://www.mirbase.org/",
      "name": "miRBase mature miRNA ID",
      "pattern": "MIMAT\\d{7}",
      "prefix": "P2871"
    }
  },
  "mirex": {
    "mappings": {
      "miriam": "mirex",
      "n2t": "mirex",
      "prefixcommons": "MIREX"
    },
    "miriam": {
      "deprecated": false,
      "description": "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.",
      "homepage": "http://comgen.pl/mirex/?page=home",
      "id": "00000329",
      "name": "mirEX",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+(\\w+)?$",
      "prefix": "mirex",
      "provider_url": "http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes",
      "sampleId": "165a"
    },
    "n2t": {
      "description": "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT&#x2013;qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.",
      "example": "165a",
      "homepage": "http://comgen.pl/mirex/?page=home",
      "name": "mirEX at Adam Mickiewicz University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+(\\w+)?$",
      "prefix": "mirex",
      "provider_url": "http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mirex/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIREX"
    }
  },
  "miriam.collection": {
    "mappings": {
      "miriam": "miriam.collection",
      "n2t": "miriam.collection",
      "prefixcommons": "MIRIAM.COLLECTION"
    },
    "miriam": {
      "deprecated": true,
      "description": "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.",
      "homepage": "https://www.ebi.ac.uk/miriam/",
      "id": "00000008",
      "name": "MIRIAM Registry collection",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MIR:000\\d{5}$",
      "prefix": "miriam.collection",
      "provider_url": "https://registry.identifiers.org/deprecation/resources/MIR:00100005/$1",
      "sampleId": "MIR:00000008"
    },
    "n2t": {
      "description": "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.",
      "example": "MIR:00000008",
      "homepage": "https://www.ebi.ac.uk/miriam/",
      "name": "MIRIAM Resources (data collection)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MIR:000\\d{5}$",
      "prefix": "miriam.collection",
      "provider_url": "https://www.ebi.ac.uk/miriam/main/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/miriam.collection/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIRIAM.COLLECTION"
    }
  },
  "miriam.resource": {
    "comment": "yo dawg i heard you like registries...",
    "mappings": {
      "miriam": "miriam.resource",
      "n2t": "miriam.resource",
      "prefixcommons": "MIRIAM.RESOURCE"
    },
    "miriam": {
      "deprecated": false,
      "description": "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.",
      "homepage": "https://www.ebi.ac.uk/miriam/",
      "id": "00000188",
      "name": "MIRIAM Registry resource",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MIR:001\\d{5}$",
      "prefix": "miriam.resource",
      "provider_url": "https://www.ebi.ac.uk/miriam/main/resources/$1",
      "sampleId": "MIR:00100005"
    },
    "n2t": {
      "description": "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.",
      "example": "MIR:00100005",
      "homepage": "https://www.ebi.ac.uk/miriam/",
      "name": "MIRIAM Registry (resources)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MIR:001\\d{5}$",
      "prefix": "miriam.resource",
      "provider_url": "https://www.ebi.ac.uk/miriam/main/resources/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/miriam.resource/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIRIAM.RESOURCE"
    }
  },
  "mirnao": {
    "bioportal": {
      "name": "MicroRNA Ontology",
      "prefix": "MIRNAO"
    },
    "mappings": {
      "bioportal": "MIRNAO",
      "obofoundry": "mirnao",
      "prefixcommons": "MIRNAO"
    },
    "obofoundry": {
      "contact": "topalis@imbb.forth.gr",
      "contact.label": "Pantelis Topalis",
      "deprecated": true,
      "description": "An application ontology for use with miRNA databases.",
      "download.owl": "http://purl.obolibrary.org/obo/mirnao.owl",
      "homepage": "http://code.google.com/p/mirna-ontology/",
      "license": "CC0",
      "name": "microRNA Ontology",
      "prefix": "mirnao"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MIRNAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MIRNAO"
    }
  },
  "mirnest": {
    "mappings": {
      "miriam": "mirnest",
      "n2t": "mirnest",
      "prefixcommons": "MIRNEST"
    },
    "miriam": {
      "deprecated": false,
      "description": "miRNEST is a database of animal, plant and virus microRNAs, containing  miRNA predictions conducted on Expressed Sequence Tags of animal and  plant species.",
      "homepage": "http://rhesus.amu.edu.pl/mirnest/copy/",
      "id": "00000246",
      "name": "miRNEST",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MNEST\\d+$",
      "prefix": "mirnest",
      "provider_url": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1",
      "sampleId": "MNEST029358"
    },
    "n2t": {
      "description": "miRNEST is a database of animal, plant and virus microRNAs, containing  miRNA predictions conducted on Expressed Sequence Tags of animal and  plant species.",
      "example": "MNEST029358",
      "homepage": "http://rhesus.amu.edu.pl/mirnest/copy/",
      "name": "miRNEST at Adam Mickiewicz University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MNEST\\d+$",
      "prefix": "mirnest",
      "provider_url": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mirnest/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIRNEST"
    }
  },
  "miro": {
    "bioportal": {
      "name": "Mosquito Insecticide Resistance",
      "prefix": "MIRO"
    },
    "download_obo": "http://purl.obolibrary.org/obo/miro.obo",
    "example": "40000617",
    "mappings": {
      "bioportal": "MIRO",
      "obofoundry": "miro",
      "ols": "miro",
      "prefixcommons": "MIRO"
    },
    "obofoundry": {
      "contact": "louis@imbb.forth.gr",
      "contact.label": "C. Louis",
      "deprecated": false,
      "description": "Application ontology for entities related to insecticide resistance in mosquitos",
      "download.obo": "http://purl.obolibrary.org/obo/miro.obo",
      "download.owl": "http://purl.obolibrary.org/obo/miro.owl",
      "name": "Mosquito insecticide resistance",
      "prefix": "miro"
    },
    "ols": {
      "description": "Application ontology for entities related to insecticide resistance in mosquitos",
      "download": "http://purl.obolibrary.org/obo/miro.owl",
      "homepage": "http://anobase.vectorbase.org",
      "name": "Mosquito insecticide resistance",
      "prefix": "miro",
      "version": "2014-05-14",
      "version.iri": "http://purl.obolibrary.org/obo/miro/releases/2014-05-14/miro.owl"
    },
    "pattern": "^\\d{8}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MIRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MIRO"
    }
  },
  "mirtarbase": {
    "mappings": {
      "miriam": "mirtarbase",
      "n2t": "mirtarbase",
      "prefixcommons": "MIRTARBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.",
      "homepage": "http://mirtarbase.mbc.nctu.edu.tw/",
      "id": "00000562",
      "name": "miRTarBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MIRT\\d{6}$",
      "prefix": "mirtarbase",
      "provider_url": "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=$1",
      "sampleId": "MIRT000002"
    },
    "n2t": {
      "description": "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.",
      "example": "MIRT000002",
      "homepage": "http://mirtarbase.mbc.nctu.edu.tw/",
      "name": "miRTarBase at National Chiao Tung University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MIRT\\d{6}$",
      "prefix": "mirtarbase",
      "provider_url": "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mirtarbase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MIRTARBASE"
    }
  },
  "mirte": {
    "example": "miR-1",
    "homepage": "http://www.russelllab.org/miRNAs/",
    "name": "miRNA Target Prediction at EMBL"
  },
  "mmdb": {
    "mappings": {
      "miriam": "mmdb",
      "n2t": "mmdb",
      "prefixcommons": "MMDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.",
      "homepage": "http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure",
      "id": "00000121",
      "name": "Molecular Modeling Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{1,5}$",
      "prefix": "mmdb",
      "provider_url": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1",
      "sampleId": "50885"
    },
    "n2t": {
      "description": "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.",
      "example": "50885",
      "homepage": "http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure",
      "name": "MMDB at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{1,5}$",
      "prefix": "mmdb",
      "provider_url": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mmdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MMDB"
    }
  },
  "mmmp.biomaps": {
    "mappings": {
      "miriam": "mmmp:biomaps",
      "n2t": "biomaps",
      "prefixcommons": "MMMP:BIOMAPS"
    },
    "miriam": {
      "deprecated": false,
      "description": "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.",
      "id": "00000075",
      "name": "Melanoma Molecular Map Project Biomaps",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "mmmp:biomaps",
      "sampleId": "37"
    },
    "n2t": {
      "description": "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.",
      "example": "37",
      "homepage": "http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp",
      "name": "main webpage",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "biomaps",
      "provider_url": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mmmp:biomaps/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MMMP:BIOMAPS"
    }
  },
  "mmmp:biomaps": {
    "mappings": {
      "miriam": "mmmp:biomaps",
      "prefixcommons": "MMMP:BIOMAPS"
    },
    "miriam": {
      "deprecated": false,
      "description": "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.",
      "homepage": "http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp",
      "id": "00000075",
      "name": "Melanoma Molecular Map Project Biomaps",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "mmmp:biomaps",
      "provider_url": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1",
      "sampleId": "37"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mmmp:biomaps/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MMMP:BIOMAPS"
    }
  },
  "mmo": {
    "bioportal": {
      "name": "Measurement Method Ontology",
      "prefix": "MMO"
    },
    "example": "0000574",
    "mappings": {
      "bioportal": "MMO",
      "obofoundry": "mmo",
      "ols": "mmo",
      "prefixcommons": "MMO"
    },
    "obofoundry": {
      "contact": "jrsmith@mcw.edu",
      "contact.label": "Jennifer Smith",
      "deprecated": false,
      "description": "A representation of the variety of methods used to make clinical and phenotype measurements. ",
      "download.obo": "http://purl.obolibrary.org/obo/mmo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/mmo.owl",
      "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
      "license": "CC-0",
      "name": "Measurement method ontology",
      "prefix": "mmo"
    },
    "ols": {
      "description": "A representation of the variety of methods used to make clinical and phenotype measurements. ",
      "download": "http://purl.obolibrary.org/obo/mmo.owl",
      "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
      "name": "Measurement method ontology",
      "prefix": "mmo",
      "version": "2019-03-27",
      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.39/mmo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MMO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MMO"
    }
  },
  "mmp.cat": {
    "mappings": {
      "miriam": "mmp.cat",
      "n2t": "mmp.cat",
      "prefixcommons": "MMP.CAT"
    },
    "miriam": {
      "deprecated": false,
      "description": "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.",
      "homepage": "https://mmp.sfb.uit.no/databases/marcat/",
      "id": "00000615",
      "name": "MarCat",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MMP\\d+.\\d+$",
      "prefix": "mmp.cat",
      "provider_url": "https://mmp.sfb.uit.no/databases/marcat/#/records/$1",
      "sampleId": "MMP743597.11"
    },
    "n2t": {
      "description": "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.",
      "example": "MMP743597.11",
      "homepage": "https://mmp.sfb.uit.no/databases/marcat/",
      "name": "MarCat through SfB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MMP\\d+.\\d+$",
      "prefix": "mmp.cat",
      "provider_url": "https://mmp.sfb.uit.no/databases/marcat/#/records/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mmp.cat/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MMP.CAT"
    }
  },
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    "mappings": {
      "miriam": "mmp.db",
      "n2t": "mmp.db",
      "prefixcommons": "MMP.DB"
    },
    "miriam": {
      "deprecated": false,
      "description": "MarDB includes all sequenced marine microbial genomes regardless of level of completeness.",
      "homepage": "https://mmp.sfb.uit.no/databases/mardb/",
      "id": "00000614",
      "name": "MarDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MMP\\d+.\\d+$",
      "prefix": "mmp.db",
      "provider_url": "https://mmp.sfb.uit.no/databases/mardb/#/records/$1",
      "sampleId": "MMP02954345.1"
    },
    "n2t": {
      "description": "MarDB includes all sequenced marine microbial genomes regardless of level of completeness.",
      "example": "MMP02954345.1",
      "homepage": "https://mmp.sfb.uit.no/databases/mardb/",
      "name": "MarDB through SfB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MMP\\d+.\\d+$",
      "prefix": "mmp.db",
      "provider_url": "https://mmp.sfb.uit.no/databases/mardb/#/records/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mmp.db/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MMP.DB"
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  "mmp.fun": {
    "mappings": {
      "miriam": "mmp.fun"
    },
    "miriam": {
      "deprecated": false,
      "description": "MarFun is manually curated database for marine fungi which is a part of the MAR databases.",
      "homepage": "https://mmp.sfb.uit.no/databases/marfun",
      "id": "00000729",
      "name": "MarFun",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MMP\\d+.\\d+$",
      "prefix": "mmp.fun",
      "provider_url": "https://mmp.sfb.uit.no/databases/marfun/#/records/$1",
      "sampleId": "MMP3888430"
    }
  },
  "mmp.ref": {
    "mappings": {
      "miriam": "mmp.ref",
      "n2t": "mmp.ref",
      "prefixcommons": "MMP.REF"
    },
    "miriam": {
      "deprecated": false,
      "description": "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.",
      "homepage": "https://mmp.sfb.uit.no/databases/marref/",
      "id": "00000613",
      "name": "MarRef",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MMP\\d+.\\d+$",
      "prefix": "mmp.ref",
      "provider_url": "https://mmp.sfb.uit.no/databases/marref/#/records/$1",
      "sampleId": "MMP3312982.2"
    },
    "n2t": {
      "description": "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.",
      "example": "MMP3312982.2",
      "homepage": "https://mmp.sfb.uit.no/databases/marref/",
      "name": "MarRef through SfB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MMP\\d+.\\d+$",
      "prefix": "mmp.ref",
      "provider_url": "https://mmp.sfb.uit.no/databases/marref/#/records/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mmp.ref/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MMP.REF"
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  },
  "mmrrc": {
    "cellosaurus": {
      "category": "Cell line collections",
      "homepage": "https://www.mmrrc.org/",
      "name": "Mutant Mouse Resource & Research Centers",
      "prefix": "MMRRC",
      "url": "https://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1"
    },
    "homepage": "https://www.mmrrc.org",
    "mappings": {
      "cellosaurus": "MMRRC",
      "miriam": "mmrrc",
      "n2t": "mmrrc",
      "prefixcommons": "MMRRC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.",
      "homepage": "http://www.mmrrc.org/",
      "id": "00000324",
      "name": "MMRRC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "mmrrc",
      "provider_url": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1",
      "sampleId": "70"
    },
    "n2t": {
      "description": "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.",
      "example": "70",
      "homepage": "http://www.mmrrc.org/",
      "name": "MMRRC  at University of North Carolina",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "mmrrc",
      "provider_url": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1"
    },
    "name": "Mutant Mouse Resource and Research Centers",
    "prefixcommons": {
      "formatter": "https://www.mmrrc.org/catalog/sds.php?mmrrc_id=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "MMRRC"
    }
  },
  "mmsl": {
    "example": "3355",
    "name": "Multum MediSource Lexicon",
    "references": [
      "https://www.nlm.nih.gov/research/umls/rxnorm/sourcereleasedocs/mmsl.html"
    ],
    "synonyms": [
      "MMSL_CODE"
    ]
  },
  "mmusdv": {
    "bioportal": {
      "name": "Mouse Developmental Stages",
      "prefix": "MMUSDV"
    },
    "example": "0000066",
    "mappings": {
      "bioportal": "MMUSDV",
      "obofoundry": "mmusdv",
      "ols": "mmusdv",
      "prefixcommons": "MMUSDV"
    },
    "obofoundry": {
      "contact": "bgee@sib.swiss",
      "contact.label": "bgee",
      "deprecated": false,
      "description": "Life cycle stages for Mus Musculus",
      "download.obo": "http://purl.obolibrary.org/obo/mmusdv.obo",
      "download.owl": "http://purl.obolibrary.org/obo/mmusdv.owl",
      "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv",
      "license": "CC-BY",
      "name": "Mouse Developmental Stages",
      "preferredPrefix": "MmusDv",
      "prefix": "mmusdv"
    },
    "ols": {
      "description": "Life cycle stages for Mus Musculus",
      "download": "http://purl.obolibrary.org/obo/mmusdv.owl",
      "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv",
      "name": "Mouse Developmental Stages",
      "prefix": "mmusdv",
      "version": "2020-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/mmusdv/releases/2020-03-10/mmusdv.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MMUSDV_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MMUSDV"
    },
    "synonyms": [
      "MmusDv"
    ]
  },
  "mo": {
    "bioportal": {
      "name": "Microarray and Gene Expression Data Ontology",
      "prefix": "MO"
    },
    "mappings": {
      "bioportal": "MO",
      "miriam": "mo",
      "n2t": "mo",
      "obofoundry": "mo",
      "prefixcommons": "MO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.",
      "homepage": "https://mged.sourceforge.net/ontologies/MGEDontology.php",
      "id": "00000303",
      "name": "MGED Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "mo",
      "provider_url": "https://mged.sourceforge.net/ontologies/MGEDontology.php#$1",
      "sampleId": "ArrayGroup"
    },
    "n2t": {
      "description": "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.",
      "example": "ArrayGroup",
      "homepage": "http://bioportal.bioontology.org/",
      "name": "MGED Ontology at BioPortal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "mo",
      "provider_url": "http://purl.bioontology.org/ontology/MO/$1"
    },
    "obofoundry": {
      "contact": "stoeckrt@pcbi.upenn.edu",
      "contact.label": "Chris Stoeckert",
      "deprecated": true,
      "description": "A standardized description of a microarray experiment in support of MAGE v.1.",
      "download.owl": "http://purl.obolibrary.org/obo/mo.owl",
      "homepage": "http://mged.sourceforge.net/ontologies/MGEDontology.php",
      "name": "Microarray experimental conditions",
      "prefix": "mo"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MO"
    }
  },
  "mobidb": {
    "homepage": "http://mobidb.bio.unipd.it",
    "mappings": {
      "miriam": "mobidb",
      "n2t": "mobidb",
      "prefixcommons": "MOBIDB",
      "uniprot": "MobiDB",
      "uniprot.database": "MobiDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "MobiDB is a database of protein disorder and mobility annotations.",
      "homepage": "http://mobidb.bio.unipd.it",
      "id": "00000637",
      "name": "MobiDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$",
      "prefix": "mobidb",
      "provider_url": "http://mobidb.bio.unipd.it/$1",
      "sampleId": "P10636"
    },
    "n2t": {
      "description": "MobiDB is a database of protein disorder and mobility annotations.",
      "example": "P10636",
      "homepage": "http://mobidb.bio.unipd.it",
      "name": "MobiDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$",
      "prefix": "mobidb",
      "provider_url": "http://mobidb.bio.unipd.it/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mobidb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MOBIDB"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "https://mobidb.bio.unipd.it/entries/%u",
      "identifier": "183",
      "name": "MobiDB: a database of protein disorder and mobility annotations",
      "prefix": "MobiDB"
    }
  },
  "mod": {
    "bioportal": {
      "name": "Protein Modification Ontology",
      "prefix": "PSIMOD"
    },
    "example": "01467",
    "go": {
      "homepage": "http://www.psidev.info/groups/protein-modifications",
      "name": "Proteomics Standards Initiative protein modification ontology",
      "prefix": "PSI-MOD",
      "synonyms": [
        "MOD"
      ]
    },
    "mappings": {
      "bioportal": "PSIMOD",
      "go": "PSI-MOD",
      "miriam": "mod",
      "n2t": "mod",
      "obofoundry": "mod",
      "ols": "mod",
      "prefixcommons": "MOD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Proteomics Standards Initiative modification ontology (PSI-MOD)  aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.",
      "homepage": "http://bioportal.bioontology.org/ontologies/PSIMOD",
      "id": "00000056",
      "name": "Protein Modification Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MOD:\\d{5}",
      "prefix": "mod",
      "provider_url": "http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:$1",
      "sampleId": "00001"
    },
    "n2t": {
      "description": "The Proteomics Standards Initiative modification ontology (PSI-MOD)  aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.",
      "example": "00001",
      "homepage": "http://bioportal.bioontology.org/ontologies/PSIMOD",
      "name": "Protein modifications ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MOD:\\d{5}",
      "prefix": "mod",
      "provider_url": "http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:$1"
    },
    "obofoundry": {
      "contact": "pierre-alain.binz@chuv.ch",
      "contact.label": "Pierre-Alain Binz",
      "deprecated": false,
      "description": "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications",
      "download.obo": "http://purl.obolibrary.org/obo/mod.obo",
      "download.owl": "http://purl.obolibrary.org/obo/mod.owl",
      "homepage": "http://www.psidev.info/MOD",
      "license": "CC-BY 4.0",
      "name": "Protein modification",
      "prefix": "mod"
    },
    "ols": {
      "description": "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications",
      "download": "http://purl.obolibrary.org/obo/mod.owl",
      "homepage": "http://www.psidev.info/MOD",
      "name": "Protein modification",
      "prefix": "mod",
      "version": "2020-04-14",
      "version.iri": "http://purl.obolibrary.org/obo/mod/releases/2020-04-14/mod.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MOD_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MOD"
    }
  },
  "modeldb": {
    "mappings": {
      "miriam": "modeldb",
      "n2t": "modeldb",
      "prefixcommons": "MODELDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.",
      "homepage": "http://senselab.med.yale.edu/ModelDB/",
      "id": "00000131",
      "name": "ModelDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "modeldb",
      "provider_url": "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$1",
      "sampleId": "45539"
    },
    "n2t": {
      "description": "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.",
      "example": "45539",
      "homepage": "http://senselab.med.yale.edu/ModelDB/",
      "name": "ModelDB at SenseLab",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "modeldb",
      "provider_url": "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/modeldb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MODELDB"
    }
  },
  "molbase": {
    "mappings": {
      "miriam": "molbase",
      "n2t": "molbase",
      "prefixcommons": "MOLBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.",
      "homepage": "http://www.molbase.com/",
      "id": "00000458",
      "name": "Molbase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$",
      "prefix": "molbase",
      "provider_url": "http://www.molbase.com/en/index.php?app=search&search_keyword=$1",
      "sampleId": "128796-39-4"
    },
    "n2t": {
      "description": "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.",
      "example": "128796-39-4",
      "homepage": "http://www.molbase.com/",
      "name": "Molbase at Chinese Academy of Sciences",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$",
      "prefix": "molbase",
      "provider_url": "http://www.molbase.com/en/index.php?app=search&search_keyword=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/molbase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MOLBASE"
    }
  },
  "molbase.sheffield": {
    "deprecated": true,
    "description": "An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students.",
    "example": "1868",
    "homepage": "https://winter.group.shef.ac.uk/molbase/",
    "name": "MolBase",
    "pattern": "^\\d+$"
  },
  "molmedb": {
    "mappings": {
      "miriam": "molmedb"
    },
    "miriam": {
      "deprecated": false,
      "description": "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. ",
      "homepage": "http://www.upol.cz/en/",
      "id": "00000768",
      "name": "MolMeDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[m,M]{2}[0-9]{5}[0-9]*$",
      "prefix": "molmedb",
      "provider_url": "https://molmedb.upol.cz/mol/$1",
      "sampleId": "MM00040"
    }
  },
  "mondo": {
    "bioportal": {
      "name": "Mondo Disease Ontology",
      "prefix": "MONDO"
    },
    "download_obo": "http://purl.obolibrary.org/obo/mondo.obo",
    "example": "0000001",
    "mappings": {
      "bioportal": "MONDO",
      "obofoundry": "mondo",
      "ols": "mondo",
      "prefixcommons": "MONDO"
    },
    "name": "Monarch Disease Ontology",
    "obofoundry": {
      "contact": "vasilevs@ohsu.edu",
      "contact.label": "Nicole Vasilevsky",
      "deprecated": false,
      "description": "A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.",
      "download.json": "http://purl.obolibrary.org/obo/mondo.json",
      "download.obo": "http://purl.obolibrary.org/obo/mondo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/mondo.owl",
      "homepage": "https://monarch-initiative.github.io/mondo",
      "license": "CC BY 4.0",
      "name": "Mondo Disease Ontology",
      "prefix": "mondo"
    },
    "ols": {
      "description": "A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.",
      "download": "http://purl.obolibrary.org/obo/mondo.owl",
      "homepage": "http://obofoundry.org/ontology/mondo.html",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Mondo Disease Ontology",
      "prefix": "mondo",
      "version": "2021-07-12",
      "version.iri": "http://purl.obolibrary.org/obo/mondo/releases/2021-07-12/mondo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MONDO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MONDO"
    },
    "wikidata": {
      "prefix": "P5270"
    }
  },
  "mop": {
    "bioportal": {
      "name": "Molecular Process Ontology",
      "prefix": "MOP"
    },
    "download_obo": "https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo",
    "example": "0000079",
    "mappings": {
      "bioportal": "MOP",
      "obofoundry": "mop",
      "ols": "mop",
      "prefixcommons": "MOP"
    },
    "name": "Molecular Process Ontology",
    "obofoundry": {
      "contact": "batchelorc@rsc.org",
      "contact.label": "Colin Batchelor",
      "deprecated": false,
      "description": "Processes at the molecular level",
      "download.owl": "http://purl.obolibrary.org/obo/mop.owl",
      "homepage": "https://github.com/rsc-ontologies/rxno",
      "license": "CC-BY 4.0",
      "name": "Molecular Process Ontology",
      "prefix": "mop"
    },
    "ols": {
      "contact": "chemistry-ontologies@googlegroups.com",
      "description": "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.",
      "download": "http://purl.obolibrary.org/obo/mop.owl",
      "homepage": "https://github.com/rsc-ontologies/rxno",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "MOP",
      "prefix": "mop",
      "version": "2014-09-03",
      "version.iri": "http://purl.obolibrary.org/obo/mop/releases/2014-09-03/mop.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MOP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MOP"
    }
  },
  "morpheus": {
    "mappings": {
      "miriam": "morpheus"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.\n",
      "homepage": "https://morpheus.gitlab.io/",
      "id": "00000725",
      "name": "Morpheus model repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^M[0-9]{4,}$",
      "prefix": "morpheus",
      "provider_url": "https://morpheus.gitlab.io/models/$1",
      "sampleId": "M0001"
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  },
  "mp": {
    "bioportal": {
      "name": "Mammalian Phenotype Ontology",
      "prefix": "MP"
    },
    "mappings": {
      "bioportal": "MP",
      "miriam": "mp",
      "n2t": "mp",
      "obofoundry": "mp",
      "ols": "mp",
      "prefixcommons": "MP"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.",
      "homepage": "https://bioportal.bioontology.org/ontologies/MP",
      "id": "00000580",
      "name": "Mammalian Phenotype Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MP:\\d{7}$",
      "prefix": "mp",
      "provider_url": "https://bioportal.bioontology.org/ontologies/MP/MP:$1",
      "sampleId": "0005452"
    },
    "n2t": {
      "description": "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.",
      "example": "0005452",
      "homepage": "https://bioportal.bioontology.org/ontologies/MP",
      "name": "Mammalian Phenotype Ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MP:\\d{7}$",
      "prefix": "mp",
      "provider_url": "https://bioportal.bioontology.org/ontologies/MP/MP:$1"
    },
    "obofoundry": {
      "contact": "pheno@jax.org",
      "contact.label": "JAX phenotype list",
      "deprecated": false,
      "description": "Standard terms for annotating mammalian phenotypic data.",
      "download.json": "http://purl.obolibrary.org/obo/mp.json",
      "download.obo": "http://purl.obolibrary.org/obo/mp.obo",
      "download.owl": "http://purl.obolibrary.org/obo/mp.owl",
      "homepage": "http://www.informatics.jax.org/searches/MP_form.shtml",
      "license": "CC-BY 4.0",
      "name": "Mammalian Phenotype Ontology",
      "prefix": "mp"
    },
    "ols": {
      "description": "The Mammalian Phenotype Ontology is being developed by Cynthia L. Smith, Susan M. Bello, Carroll W. Goldsmith and Janan T. Eppig, as part of the Mouse Genome Database (MGD) Project, Mouse Genome Informatics (MGI), The Jackson Laboratory, Bar Harbor, ME. This file contains pre-coordinated phenotype terms, definitions and synonyms that can be used to describe mammalian phenotypes. The ontology is represented as a directed acyclic graph (DAG). It organizes phenotype terms into major biological system headers such as nervous system and respiratory system.  This ontology is currently under development. Weekly updates are available at the Mouse Genome Informatics (MGI) ftp site (ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno) as well as the OBO Foundry site (http://obofoundry.org/). Questions, comments and suggestions are welcome, and should be directed to pheno@jax.org, Susan.Bello@jax.org or to GitHub tracker (https://github.com/obophenotype/mammalian-phenotype-ontology/issues) MGD is funded by NIH/NHGRI grant HG000330.",
      "download": "http://purl.obolibrary.org/obo/mp.owl",
      "homepage": "http://www.informatics.jax.org/searches/MP_form.shtml",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "The Mammalian Phenotype Ontology",
      "prefix": "mp",
      "version": "2019-11-11",
      "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2021-05-26"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MP"
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  },
  "mpath": {
    "bioportal": {
      "name": "Mouse Pathology Ontology",
      "prefix": "MPATH"
    },
    "download_obo": "https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo",
    "example": "728",
    "mappings": {
      "bioportal": "MPATH",
      "obofoundry": "mpath",
      "ols": "mpath",
      "prefixcommons": "MPATH"
    },
    "obofoundry": {
      "contact": "pns12@hermes.cam.ac.uk",
      "contact.label": "Paul Schofield",
      "deprecated": false,
      "description": "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes",
      "download.owl": "http://purl.obolibrary.org/obo/mpath.owl",
      "homepage": "http://www.pathbase.net",
      "license": "CC-BY",
      "name": "Mouse pathology ontology",
      "prefix": "mpath"
    },
    "ols": {
      "description": "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes",
      "download": "http://purl.obolibrary.org/obo/mpath.owl",
      "homepage": "http://www.pathbase.net",
      "name": "Mouse pathology ontology",
      "prefix": "mpath",
      "version": "2020-05-19",
      "version.iri": "http://purl.obolibrary.org/obo/mpath/2020-05-19/mpath.owl"
    },
    "pattern": "^\\d+$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MPATH_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MPATH"
    },
    "synonyms": [
      "MPATH"
    ]
  },
  "mpid": {
    "mappings": {
      "miriam": "mpid",
      "n2t": "mpid",
      "prefixcommons": "MPID"
    },
    "miriam": {
      "deprecated": false,
      "description": "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.",
      "homepage": "https://www.ebi.ac.uk/intact/",
      "id": "00000124",
      "name": "Microbial Protein Interaction Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "mpid",
      "provider_url": "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-$1",
      "sampleId": "172"
    },
    "n2t": {
      "description": "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.",
      "example": "172",
      "homepage": "http://www.jcvi.org/mpidb/about.php",
      "name": "Microbial Protein Interaction Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "mpid",
      "provider_url": "http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mpid/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MPID"
    }
  },
  "mpio": {
    "bioportal": {
      "name": "Minimum PDDI Information Ontology",
      "prefix": "MPIO"
    },
    "mappings": {
      "bioportal": "MPIO",
      "obofoundry": "mpio",
      "ols": "mpio",
      "prefixcommons": "MPIO"
    },
    "obofoundry": {
      "contact": "mbrochhausen@uams.edu",
      "contact.label": "Mathias Brochhausen",
      "deprecated": false,
      "description": "An ontology of minimum information regarding potential drug-drug interaction information.",
      "download.owl": "http://purl.obolibrary.org/obo/mpio.owl",
      "homepage": "https://github.com/MPIO-Developers/MPIO",
      "license": "CC-BY",
      "name": "Minimum PDDI Information Ontology",
      "prefix": "mpio"
    },
    "ols": {
      "description": "An ontology of minimum information regarding potential drug-drug interaction information.",
      "download": "http://purl.obolibrary.org/obo/mpio.owl",
      "homepage": "https://github.com/MPIO-Developers/MPIO",
      "name": "Minimum PDDI Information Ontology",
      "prefix": "mpio",
      "version": "2019-01-30",
      "version.iri": "http://purl.obolibrary.org/obo/mpio/release/2019-01-30/mpio.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MPIO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MPIO"
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  },
  "mro": {
    "bioportal": {
      "name": "Defen",
      "prefix": "MRO"
    },
    "example": "0000634",
    "mappings": {
      "bioportal": "MRO",
      "obofoundry": "mro",
      "ols": "mro",
      "prefixcommons": "MRO"
    },
    "obofoundry": {
      "contact": "bpeters@lji.org",
      "contact.label": "Bjoern Peters",
      "deprecated": false,
      "description": "An ontology for Major Histocompatibility Complex (MHC) restriction in experiments",
      "download.owl": "http://purl.obolibrary.org/obo/mro.owl",
      "homepage": "https://github.com/IEDB/MRO",
      "license": "CC-BY",
      "name": "MHC Restriction Ontology",
      "prefix": "mro"
    },
    "ols": {
      "description": "The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions.",
      "download": "http://purl.obolibrary.org/obo/mro.owl",
      "homepage": "https://github.com/IEDB/MRO",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "MHC Restriction Ontology",
      "prefix": "mro",
      "version": "2021-07-23",
      "version.iri": "http://purl.obolibrary.org/obo/mro/2021-07-23/mro.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MRO"
    }
  },
  "ms": {
    "bioportal": {
      "name": "Mass Spectrometry Ontology",
      "prefix": "MS"
    },
    "example": "1000560",
    "mappings": {
      "bioportal": "MS",
      "miriam": "ms",
      "n2t": "ms",
      "obofoundry": "ms",
      "ols": "ms",
      "prefixcommons": "MS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.",
      "homepage": "https://bioportal.bioontology.org/ontologies/MS",
      "id": "00000590",
      "name": "Mass Spectrometry Controlled Vocabulary",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MS:\\d{7}$",
      "prefix": "ms",
      "provider_url": "http://purl.bioontology.org/ontology/MS/MS:$1",
      "sampleId": "1000001"
    },
    "n2t": {
      "description": "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.",
      "example": "1000001",
      "homepage": "https://bioportal.bioontology.org/ontologies/MS",
      "name": "Mass Spectrometry Controlled Vocabulary through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^MS:\\d{7}$",
      "prefix": "ms",
      "provider_url": "http://purl.bioontology.org/ontology/MS/MS:$1"
    },
    "obofoundry": {
      "contact": "gerhard.mayer@rub.de",
      "contact.label": "Gerhard Mayer",
      "deprecated": false,
      "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
      "download.obo": "http://purl.obolibrary.org/obo/ms.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ms.owl",
      "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
      "license": "CC-BY",
      "name": "Mass spectrometry ontology",
      "prefix": "ms"
    },
    "ols": {
      "contact": "psidev-ms-vocab@lists.sourceforge.net",
      "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
      "download": "http://purl.obolibrary.org/obo/ms.owl",
      "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
      "name": "Mass spectrometry ontology",
      "prefix": "ms",
      "version": "2019-11-21",
      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.35/ms.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/MS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "MS"
    }
  },
  "msigdb": {
    "biolink": {
      "formatter": "https://www.gsea-msigdb.org/gsea/msigdb/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "MSigDB"
    },
    "example": "NADELLA_PRKAR1A_TARGETS_DN",
    "homepage": "https://www.gsea-msigdb.org",
    "mappings": {
      "biolink": "MSigDB"
    },
    "name": "Molecular Signatures Database",
    "synonyms": [
      "msig"
    ],
    "wikidata": {
      "paper": "Q34509167"
    }
  },
  "msio": {
    "mappings": {
      "ols": "msio"
    },
    "name": "Metabolomics Standards Initiative Ontology",
    "ols": {
      "description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.",
      "download": "https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl",
      "homepage": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO",
      "name": "Metabolomics Standards Initiative Ontology (MSIO)",
      "prefix": "msio",
      "version": "1.0.1"
    }
  },
  "multicellds.cell_line": {
    "mappings": {
      "miriam": "multicellds.cell_line",
      "n2t": "multicellds.cell_line",
      "prefixcommons": "MULTICELLDS.CELL_LINE"
    },
    "miriam": {
      "deprecated": false,
      "description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.",
      "homepage": "http://multicellds.org/MultiCellDB.php",
      "id": "00000584",
      "name": "MultiCellDS Digital Cell Line",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MCDS_L_[a-zA-Z0-9]{1,10}$",
      "prefix": "multicellds.cell_line",
      "provider_url": "http://multicellds.org/MultiCellDB/$1",
      "sampleId": "MCDS_L_0000000001"
    },
    "n2t": {
      "description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.",
      "example": "MCDS_L_0000000001",
      "homepage": "http://multicellds.org/MultiCellDB.php",
      "name": "MultiCellDS Digital Cell Line at Keck School of Medicine",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MCDS_L_[a-zA-Z0-9]{1,10}$",
      "prefix": "multicellds.cell_line",
      "provider_url": "http://multicellds.org/MultiCellDB/$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/multicellds.cell_line/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MULTICELLDS.CELL_LINE"
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  "multicellds.collection": {
    "mappings": {
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      "n2t": "multicellds.collection",
      "prefixcommons": "MULTICELLDS.COLLECTION"
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    "miriam": {
      "deprecated": false,
      "description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).",
      "homepage": "http://multicellds.org/MultiCellDB.php",
      "id": "00000582",
      "name": "MultiCellDS collection",
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      "pattern": "^MCDS_C_[a-zA-Z0-9]{1,10}$",
      "prefix": "multicellds.collection",
      "provider_url": "http://multicellds.org/MultiCellDB/$1",
      "sampleId": "MCDS_C_0000000001"
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    "n2t": {
      "description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).",
      "example": "MCDS_C_0000000001",
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      "name": "MultiCellDScollection at Keck School of Medicine",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MCDS_C_[a-zA-Z0-9]{1,10}$",
      "prefix": "multicellds.collection",
      "provider_url": "http://multicellds.org/MultiCellDB/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/multicellds.collection/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MULTICELLDS.COLLECTION"
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  "multicellds.snapshot": {
    "mappings": {
      "miriam": "multicellds.snapshot",
      "n2t": "multicellds.snapshot",
      "prefixcommons": "MULTICELLDS.SNAPSHOT"
    },
    "miriam": {
      "deprecated": false,
      "description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.",
      "homepage": "http://multicellds.org/MultiCellDB.php",
      "id": "00000583",
      "name": "MultiCellDS Digital snapshot",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MCDS_S_[a-zA-Z0-9]{1,10}$",
      "prefix": "multicellds.snapshot",
      "provider_url": "http://multicellds.org/MultiCellDB/$1",
      "sampleId": "MCDS_S_0000000001"
    },
    "n2t": {
      "description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.",
      "example": "MCDS_S_0000000001",
      "homepage": "http://multicellds.org/MultiCellDB.php",
      "name": "MultiCellDS snapshot at Keck School of Medicine",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MCDS_S_[a-zA-Z0-9]{1,10}$",
      "prefix": "multicellds.snapshot",
      "provider_url": "http://multicellds.org/MultiCellDB/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/multicellds.snapshot/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MULTICELLDS.SNAPSHOT"
    }
  },
  "mw.project": {
    "mappings": {
      "miriam": "mw.project",
      "n2t": "mw.project",
      "prefixcommons": "MW.PROJECT"
    },
    "miriam": {
      "deprecated": false,
      "description": "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).",
      "homepage": "http://www.metabolomicsworkbench.org/",
      "id": "00000647",
      "name": "Metabolomics Workbench Project",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PR[0-9]{6}$",
      "prefix": "mw.project",
      "provider_url": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1",
      "sampleId": "PR000001"
    },
    "n2t": {
      "description": "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).",
      "example": "PR000001",
      "homepage": "http://www.metabolomicsworkbench.org/",
      "name": "Metabolomics Workbench Project",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PR[0-9]{6}$",
      "prefix": "mw.project",
      "provider_url": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mw.project/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MW.PROJECT"
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  },
  "mw.study": {
    "mappings": {
      "miriam": "mw.study",
      "n2t": "mw.study",
      "prefixcommons": "MW.STUDY"
    },
    "miriam": {
      "deprecated": false,
      "description": "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).",
      "homepage": "http://www.metabolomicsworkbench.org/",
      "id": "00000646",
      "name": "Metabolomics Workbench Study",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ST[0-9]{6}$",
      "prefix": "mw.study",
      "provider_url": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1",
      "sampleId": "ST000900"
    },
    "n2t": {
      "description": "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).",
      "example": "ST000900",
      "homepage": "http://www.metabolomicsworkbench.org/",
      "name": "Metabolomics Workbench Study",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ST[0-9]{6}$",
      "prefix": "mw.study",
      "provider_url": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/mw.study/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MW.STUDY"
    }
  },
  "myco.lepra": {
    "mappings": {
      "miriam": "myco.lepra",
      "n2t": "myco.lepra",
      "prefixcommons": "MYCO.LEPRA"
    },
    "miriam": {
      "deprecated": false,
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      "name": "MycoBrowser leprae",
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      "provider_url": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1",
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      "description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.",
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      "name": "MycoBrowser leprae at Global Health Institute",
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      "pattern": "^ML\\w+$",
      "prefix": "myco.lepra",
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      "deprecated": false,
      "description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.",
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      "id": "00000218",
      "name": "MycoBrowser marinum",
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      "prefix": "myco.marinum",
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      "description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.",
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      "name": "MycoBrowser marinum at Global Health Institute",
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      "pattern": "^MMAR\\_\\d+$",
      "prefix": "myco.marinum",
      "provider_url": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1"
    },
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      "formatter": "http://identifiers.org/myco.marinum/$1",
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      "is_obo": false,
      "prefix": "MYCO.MARINUM"
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      "homepage": "http://mycobrowser.epfl.ch/smegmalist.html",
      "id": "00000219",
      "name": "MycoBrowser smegmatis",
      "namespaceEmbeddedInLui": false,
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      "prefix": "myco.smeg",
      "provider_url": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1",
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      "description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.",
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      "name": "MycoBrowser smegmatis at Global Health Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^MSMEG\\w+$",
      "prefix": "myco.smeg",
      "provider_url": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/myco.smeg/$1",
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      "is_obo": false,
      "prefix": "MYCO.SMEG"
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      "description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.",
      "homepage": "http://tuberculist.epfl.ch/",
      "id": "00000216",
      "name": "MycoBrowser tuberculosis",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Rv\\d{4}(A|B|c)?$",
      "prefix": "myco.tuber",
      "provider_url": "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1",
      "sampleId": "Rv1908c"
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    "n2t": {
      "description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.",
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      "name": "MycoBrowser tuberculosis at Global Health Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Rv\\d{4}(A|B|c)?$",
      "prefix": "myco.tuber",
      "provider_url": "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/myco.tuber/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MYCO.TUBER"
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      "deprecated": false,
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      "name": "MycoBank",
      "namespaceEmbeddedInLui": false,
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      "sampleId": "349124"
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    "n2t": {
      "description": "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.",
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      "name": "MycoBank at Fungal Biodiversity Centre",
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      "pattern": "^\\d+$",
      "prefix": "mycobank",
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      "name": "Fungal Nomenclature and Species Bank",
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    "prefixcommons": {
      "formatter": "http://identifiers.org/mycobank/$1",
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      "prefix": "MYCOBANK"
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      "homepage": "http://proteomecentral.proteomexchange.org/",
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      "namespaceEmbeddedInLui": true,
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      "homepage": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum",
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      "namespaceEmbeddedInLui": true,
      "pattern": "^mzspec:.+$",
      "prefix": "mzspec",
      "provider_url": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum?usi=mzspec:$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/mzspec/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "MZSPEC"
    }
  },
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    "comment": "The nomenclature used for named reactions in text mining software from NextMove",
    "name": "NameRXN",
    "references": [
      "https://www.nextmovesoftware.com/products/HazELNutPoster.pdf"
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  "napdi": {
    "mappings": {
      "miriam": "napdi",
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      "deprecated": false,
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      "prefix": "napdi",
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      "sampleId": "28"
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    "n2t": {
      "description": "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs).",
      "example": "28",
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      "name": "Natural Product-Drug Interaction Research Data Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "napdi",
      "provider_url": "https://repo.napdi.org/study/$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/napdi/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NAPDI"
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  },
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    "mappings": {
      "miriam": "napp",
      "n2t": "napp",
      "prefixcommons": "NAPP"
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    "miriam": {
      "deprecated": false,
      "description": "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.",
      "homepage": "http://napp.u-psud.fr/",
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      "pattern": "^\\d+$",
      "prefix": "napp",
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      "sampleId": "351"
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    "n2t": {
      "description": "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.",
      "example": "351",
      "homepage": "http://napp.u-psud.fr/",
      "name": "NAPP at CNRS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "napp",
      "provider_url": "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$1"
    },
    "name": "Nucleic Acids Phylogenetic Profiling",
    "prefixcommons": {
      "formatter": "http://identifiers.org/napp/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NAPP"
    }
  },
  "narcis": {
    "homepage": "http://www.narcis.nl",
    "mappings": {
      "miriam": "narcis",
      "n2t": "narcis",
      "prefixcommons": "NARCIS"
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    "miriam": {
      "deprecated": false,
      "description": "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.",
      "homepage": "http://www.narcis.nl/?Language=en",
      "id": "00000240",
      "name": "NARCIS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^oai\\:cwi\\.nl\\:\\d+$",
      "prefix": "narcis",
      "provider_url": "http://www.narcis.nl/publication/RecordID/$1",
      "sampleId": "oai:cwi.nl:4725"
    },
    "n2t": {
      "description": "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.",
      "example": "oai:cwi.nl:4725",
      "homepage": "http://www.narcis.nl/?Language=en",
      "name": "NARCIS at The Hague",
      "namespaceEmbeddedInLui": false,
      "pattern": "^oai\\:cwi\\.nl\\:\\d+$",
      "prefix": "narcis",
      "provider_url": "http://www.narcis.nl/publication/RecordID/$1"
    },
    "name": "National Academic Research and Collaborations Information System",
    "prefixcommons": {
      "formatter": "http://identifiers.org/narcis/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NARCIS"
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  },
  "nasc": {
    "mappings": {
      "miriam": "nasc",
      "n2t": "nasc",
      "prefixcommons": "NASC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.",
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      "name": "NASC code",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(\\w+)?\\d+$",
      "prefix": "nasc",
      "provider_url": "http://arabidopsis.info/StockInfo?NASC_id=$1",
      "sampleId": "N1899"
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    "n2t": {
      "description": "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.",
      "example": "N1899",
      "homepage": "http://arabidopsis.info/",
      "name": "NASC at University of Nottingham",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(\\w+)?\\d+$",
      "prefix": "nasc",
      "provider_url": "http://arabidopsis.info/StockInfo?NASC_id=$1"
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      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NASC"
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      "prefixcommons": "NBN"
    },
    "miriam": {
      "deprecated": false,
      "description": "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland.  They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.",
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      "sampleId": "urn:nbn:fi:tkk-004781"
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    "n2t": {
      "description": "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland.  They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.",
      "example": "urn:nbn:fi:tkk-004781",
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      "formatter": "http://identifiers.org/nbn/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NBN"
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    "bioportal": {
      "name": "Neuro Behavior Ontology",
      "prefix": "NBO"
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    "download_obo": "https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo",
    "example": "0000564",
    "mappings": {
      "bioportal": "NBO",
      "obofoundry": "nbo",
      "ols": "nbo",
      "prefixcommons": "NBO"
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    "obofoundry": {
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      "contact.label": "George Gkoutos",
      "deprecated": false,
      "description": "An ontology of human and animal behaviours and behavioural phenotypes",
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      "homepage": "https://github.com/obo-behavior/behavior-ontology/",
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      "is_obo": true,
      "prefix": "NBO"
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      "deprecated": false,
      "description": "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.",
      "homepage": "http://www.nbrc.nite.go.jp/e/index.html",
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      "name": "NITE Biological Research Center Catalogue",
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      "provider_url": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1",
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      "description": "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.",
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      "provider_url": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1"
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      "example": "3189",
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      "name": "NITE Biological Resource Center",
      "prefix": "NBRC"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/nbrc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NBRC"
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  },
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    "name": "NCATS Drugs",
    "url": "https://drugs.ncats.io/drug/$1"
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      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NCBIGene"
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    "go": {
      "formatter": "https://www.ncbi.nlm.nih.gov/gene/$1",
      "homepage": "http://www.ncbi.nlm.nih.gov/",
      "name": "NCBI Gene",
      "prefix": "NCBIGene",
      "synonyms": [
        "GeneID",
        "LocusID",
        "NCBI_Gene"
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      "deprecated": false,
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      "description": "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.",
      "example": "100010",
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      "prefix": "ncbigene",
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      "example": "3054987",
      "homepage": "https://www.ncbi.nlm.nih.gov/gene",
      "name": "Entrez Gene Database (replaces NCBI Locus Link)",
      "prefix": "GeneID"
    },
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/gene/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "NCBIGene"
    },
    "synonyms": [
      "entrez",
      "NCBIGene",
      "EGID",
      "entrez gene/locuslink"
    ],
    "wikidata": {
      "database": "Q1345229",
      "database.homepage": "http://www.ncbi.nlm.nih.gov/gquery/",
      "database.label": "Entrez",
      "format": "https://www.ncbi.nlm.nih.gov/gene/$1",
      "format.rdf": "http://purl.uniprot.org/geneid/$1",
      "name": "Entrez Gene ID",
      "pattern": "[1-9]\\d{0,8}",
      "prefix": "P351"
    }
  },
  "ncbiprotein": {
    "go": {
      "homepage": "https://www.ncbi.nlm.nih.gov/protein",
      "name": "NCBI Protein",
      "prefix": "NCBI_NP"
    },
    "mappings": {
      "go": "NCBI_NP",
      "miriam": "ncbiprotein",
      "n2t": "ncbiprotein",
      "prefixcommons": "NCBIProtein"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.",
      "homepage": "https://www.ncbi.nlm.nih.gov/protein",
      "id": "00000344",
      "name": "NCBI Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$",
      "prefix": "ncbiprotein",
      "provider_url": "https://www.ncbi.nlm.nih.gov/protein/$1",
      "sampleId": "CAA71118.1"
    },
    "n2t": {
      "description": "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.",
      "example": "CAA71118.1",
      "homepage": "https://www.ncbi.nlm.nih.gov/protein",
      "name": "NCBI Protein at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$",
      "prefix": "ncbiprotein",
      "provider_url": "https://www.ncbi.nlm.nih.gov/protein/$1"
    },
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/protein/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "NCBIProtein"
    }
  },
  "ncbitaxon": {
    "bioportal": {
      "name": "National Center for Biotechnology Information (NCBI) Organismal Classification",
      "prefix": "NCBITAXON"
    },
    "cellosaurus": {
      "category": "Taxonomy",
      "homepage": "https://www.ncbi.nlm.nih.gov/taxonomy",
      "name": "NCBI taxonomy database",
      "prefix": "NCBI_TaxID",
      "url": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1&lvl=3"
    },
    "download_obo": "http://purl.obolibrary.org/obo/ncbitaxon.obo",
    "example": "2170610",
    "go": {
      "formatter": "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$1",
      "homepage": "http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/",
      "name": "NCBI Taxonomy",
      "prefix": "taxon",
      "synonyms": [
        "NCBITaxon",
        "ncbi_taxid"
      ]
    },
    "mappings": {
      "bioportal": "NCBITAXON",
      "cellosaurus": "NCBI_TaxID",
      "go": "taxon",
      "miriam": "taxonomy",
      "n2t": "taxonomy",
      "ncbi": "taxon",
      "obofoundry": "ncbitaxon",
      "ols": "ncbitaxon",
      "prefixcommons": "NCBITaxon",
      "wikidata": "P685"
    },
    "miriam": {
      "deprecated": false,
      "description": "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.",
      "homepage": "https://www.ncbi.nlm.nih.gov/Taxonomy/",
      "id": "00000006",
      "name": "Taxonomy",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "taxonomy",
      "provider_url": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1",
      "sampleId": "9606"
    },
    "n2t": {
      "description": "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.",
      "example": "9606",
      "homepage": "https://www.ncbi.nlm.nih.gov/Taxonomy/",
      "name": "NCBI Taxonomy",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "taxonomy",
      "provider_url": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1"
    },
    "ncbi": {
      "example": "4932",
      "homepage": "https://www.ncbi.nlm.nih.gov/taxonomy",
      "name": "NCBI's taxonomic identifier",
      "prefix": "taxon"
    },
    "obofoundry": {
      "contact": "frederic.bastian@unil.ch",
      "contact.label": "Frederic Bastian",
      "deprecated": false,
      "description": "An ontology representation of the NCBI organismal taxonomy",
      "download.json": "http://purl.obolibrary.org/obo/ncbitaxon.json",
      "download.obo": "http://purl.obolibrary.org/obo/ncbitaxon.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ncbitaxon.owl",
      "homepage": "https://github.com/obophenotype/ncbitaxon",
      "license": "CC0 1.0 Universal",
      "name": "NCBI organismal classification",
      "preferredPrefix": "NCBITaxon",
      "prefix": "ncbitaxon"
    },
    "ols": {
      "description": "An ontology representation of the NCBI organismal taxonomy",
      "download": "http://purl.obolibrary.org/obo/ncbitaxon.owl",
      "homepage": "https://github.com/obophenotype/ncbitaxon",
      "name": "NCBI organismal classification",
      "prefix": "ncbitaxon",
      "version": "2021-06-10",
      "version.iri": "http://purl.obolibrary.org/obo/ncbitaxon/2021-06-10/ncbitaxon.owl"
    },
    "pattern": "^\\d+$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/NCBITaxon_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "NCBITaxon"
    },
    "synonyms": [
      "NCBITaxon",
      "taxid",
      "NCBI_Taxon_ID",
      "NCBI_taxid",
      "taxonomy",
      "TAX",
      "TaxonomyID",
      "taxon"
    ],
    "wikidata": {
      "database": "Q13711410",
      "database.homepage": "https://www.ncbi.nlm.nih.gov/taxonomy",
      "database.label": "Taxonomy database of the U.S. National Center for Biotechnology Information",
      "format": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1",
      "format.rdf": "http://purl.uniprot.org/taxonomy/$1",
      "homepage": "http://www.ncbi.nlm.nih.gov/taxonomy",
      "name": "NCBI taxonomy ID",
      "pattern": "[1-9][0-9]{0,6}",
      "prefix": "P685"
    }
  },
  "ncim": {
    "mappings": {
      "miriam": "ncim",
      "n2t": "ncim",
      "prefixcommons": "NCIM"
    },
    "miriam": {
      "deprecated": false,
      "description": "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.",
      "homepage": "http://ncim.nci.nih.gov/",
      "id": "00000353",
      "name": "NCIm",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "ncim",
      "provider_url": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1",
      "sampleId": "C0026339"
    },
    "n2t": {
      "description": "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.",
      "example": "C0026339",
      "homepage": "http://ncim.nci.nih.gov/",
      "name": "NCIm at National Cancer Institue",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "ncim",
      "provider_url": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1"
    },
    "name": "NCI Metathesaurus",
    "prefixcommons": {
      "formatter": "http://identifiers.org/ncim/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NCIM"
    }
  },
  "ncit": {
    "bioportal": {
      "name": "National Cancer Institute Thesaurus",
      "prefix": "NCIT"
    },
    "cellosaurus": {
      "category": "Ontologies",
      "homepage": "https://ncit.nci.nih.gov/ncitbrowser",
      "name": "NCI thesaurus",
      "prefix": "NCIt",
      "url": "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=$1"
    },
    "download_obo": "http://purl.obolibrary.org/obo/ncit.obo",
    "example": "C138986",
    "mappings": {
      "bioportal": "NCIT",
      "cellosaurus": "NCIt",
      "miriam": "ncit",
      "n2t": "ncit",
      "obofoundry": "ncit",
      "ols": "ncit",
      "prefixcommons": "NCIT"
    },
    "miriam": {
      "deprecated": false,
      "description": "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/ncit",
      "id": "00000139",
      "name": "NCIt",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "ncit",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/ncit/terms?short_form=NCIT_$1",
      "sampleId": "C80519"
    },
    "n2t": {
      "description": "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.",
      "example": "C80519",
      "homepage": "http://ncit.nci.nih.gov/",
      "name": "NCIt at National Cancer Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "ncit",
      "provider_url": "http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$1"
    },
    "name": "NCI Thesaurus",
    "obofoundry": {
      "contact": "haendel@ohsu.edu",
      "contact.label": "Melissa Haendel",
      "deprecated": false,
      "description": "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.",
      "download.obo": "http://purl.obolibrary.org/obo/ncit.obo",
      "download.owl": "http://purl.obolibrary.org/obo/ncit.owl",
      "homepage": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition",
      "license": "CC-BY 4.0",
      "name": "NCI Thesaurus OBO Edition",
      "prefix": "ncit"
    },
    "ols": {
      "description": "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.",
      "download": "http://purl.obolibrary.org/obo/ncit.owl",
      "homepage": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition",
      "name": "NCI Thesaurus OBO Edition",
      "prefix": "ncit",
      "version": "21.05d",
      "version.iri": "http://purl.obolibrary.org/obo/ncit/releases/2021-05-25/ncit.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/NCIT_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "NCIT"
    },
    "synonyms": [
      "NCIt",
      "NCIT",
      "NCI",
      "NCI2004_11_17",
      "ncithesaurus",
      "NCI_Thesaurus",
      "NCIT_Thesaurus",
      "NCITm",
      "NCITt"
    ],
    "wikidata": {
      "database": "Q19404626",
      "prefix": "P1748"
    }
  },
  "ncro": {
    "bioportal": {
      "name": "Non-coding RNA Ontology",
      "prefix": "NCRO"
    },
    "mappings": {
      "bioportal": "NCRO",
      "obofoundry": "ncro",
      "ols": "ncro",
      "prefixcommons": "NCRO"
    },
    "obofoundry": {
      "contact": "huang@southalabama.edu",
      "contact.label": "Jingshan Huang",
      "deprecated": false,
      "description": "An ontology for non-coding RNA, both of biological origin, and engineered.",
      "homepage": "http://omnisearch.soc.southalabama.edu/w/index.php/Ontology",
      "license": "CC-BY 4.0",
      "name": "Non-Coding RNA Ontology",
      "prefix": "ncro"
    },
    "ols": {
      "contact": "ncro-devel@googlegroups.com",
      "description": "An ontology for non-coding RNA, both of biological origin, and engineered.",
      "download": "http://purl.obolibrary.org/obo/ncro.owl",
      "homepage": "http://omnisearch.soc.southalabama.edu/w/index.php/Ontology",
      "name": "Non-Coding RNA Ontology",
      "prefix": "ncro",
      "version": "2015-12-10",
      "version.iri": "http://purl.obolibrary.org/obo/ncro/2015-12-10/ncro-combined.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/NCRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "NCRO"
    }
  },
  "ndc": {
    "mappings": {
      "miriam": "ndc",
      "n2t": "ndc",
      "prefixcommons": "NDC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.",
      "homepage": "http://www.accessdata.fda.gov/scripts/cder/ndc/",
      "id": "00000431",
      "name": "National Drug Code",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+\\-\\d+\\-\\d+",
      "prefix": "ndc",
      "provider_url": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1",
      "sampleId": "0002-1975-61"
    },
    "n2t": {
      "description": "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.",
      "example": "0002-1975-61",
      "homepage": "http://www.accessdata.fda.gov/scripts/cder/ndc/",
      "name": "National Drug Code at Food and Drug Administration",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+\\-\\d+\\-\\d+",
      "prefix": "ndc",
      "provider_url": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ndc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NDC"
    }
  },
  "nddf": {
    "biolink": {
      "formatter": "http://purl.bioontology.org/ontology/NDDF/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "NDDF"
    },
    "bioportal": {
      "name": "National Drug Data File",
      "prefix": "NDDF"
    },
    "example": "002678",
    "mappings": {
      "biolink": "NDDF",
      "bioportal": "NDDF"
    },
    "name": "National Drug Data File",
    "references": [
      "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDDF/index.html"
    ]
  },
  "ndex": {
    "description": "The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.",
    "example": "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf",
    "homepage": "https://www.ndexbio.org",
    "name": "Network Data Exchange",
    "url": "https://www.ndexbio.org/viewer/networks/$1"
  },
  "ndfrt": {
    "bioportal": {
      "name": "National Drug File - Reference Terminology",
      "prefix": "NDFRT"
    },
    "example": "N0000001662",
    "mappings": {
      "bioportal": "NDFRT"
    },
    "name": "National Drug File - Reference Terminology",
    "synonyms": [
      "NUI",
      "ndf-rt"
    ],
    "wikidata": {
      "database": "Q21008030",
      "prefix": "P2115"
    }
  },
  "nemo": {
    "bioportal": {
      "name": "Neural ElectroMagnetic Ontology",
      "prefix": "NEMO"
    },
    "mappings": {
      "bioportal": "NEMO",
      "miriam": "nemo"
    },
    "miriam": {
      "deprecated": false,
      "description": "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects.",
      "homepage": "https://www.nemoarchive.org",
      "id": "00000744",
      "name": "Neuroscience Multi-Omic BRAIN Initiative Data",
      "namespaceEmbeddedInLui": false,
      "pattern": "[a-z]{3}-[a-km-z0-9]{7}",
      "prefix": "nemo",
      "provider_url": "https://assets.nemoarchive.org/$1",
      "sampleId": "smp-m3w9hbe"
    }
  },
  "neurolex": {
    "mappings": {
      "miriam": "neurolex",
      "n2t": "neurolex",
      "prefixcommons": "NEUROLEX"
    },
    "miriam": {
      "deprecated": false,
      "description": "The NeuroLex project is a dynamic lexicon of terms used in neuroscience.  It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).",
      "homepage": "http://www.neurolex.org/wiki/Main_Page",
      "id": "00000126",
      "name": "NeuroLex",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\\d+$",
      "prefix": "neurolex",
      "provider_url": "http://www.neurolex.org/wiki/$1",
      "sampleId": "Birnlex_721"
    },
    "n2t": {
      "description": "The NeuroLex project is a dynamic lexicon of terms used in neuroscience.  It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).",
      "example": "Birnlex_721",
      "homepage": "http://www.neurolex.org/wiki/Main_Page",
      "name": "NeuroLex Neuroscience Lexicon",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\\d+$",
      "prefix": "neurolex",
      "provider_url": "http://www.neurolex.org/wiki/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/neurolex/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NEUROLEX"
    }
  },
  "neuromorpho": {
    "mappings": {
      "miriam": "neuromorpho",
      "n2t": "neuromorpho",
      "prefixcommons": "NEUROMORPHO"
    },
    "miriam": {
      "deprecated": false,
      "description": "NeuroMorpho.Org is a centrally curated inventory of  digitally reconstructed neurons.",
      "homepage": "http://neuromorpho.org/index.jsp",
      "id": "00000095",
      "name": "NeuroMorpho",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "neuromorpho",
      "provider_url": "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1",
      "sampleId": "Rosa2"
    },
    "n2t": {
      "description": "NeuroMorpho.Org is a centrally curated inventory of  digitally reconstructed neurons.",
      "example": "Rosa2",
      "homepage": "http://neuromorpho.org/index.jsp",
      "name": "NeuroMorpho",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "neuromorpho",
      "provider_url": "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/neuromorpho/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NEUROMORPHO"
    }
  },
  "neuronames": {
    "example": "268",
    "homepage": "http://braininfo.rprc.washington.edu/",
    "name": "NeuroNames",
    "references": [
      "https://en.wikipedia.org/wiki/NeuroNames"
    ],
    "url": "https://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1"
  },
  "neurondb": {
    "mappings": {
      "miriam": "neurondb",
      "n2t": "neurondb",
      "prefixcommons": "NEURONDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.",
      "homepage": "http://senselab.med.yale.edu/NeuronDB/",
      "id": "00000094",
      "name": "NeuronDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "neurondb",
      "provider_url": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1",
      "sampleId": "265"
    },
    "n2t": {
      "description": "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.",
      "example": "265",
      "homepage": "http://senselab.med.yale.edu/NeuronDB/",
      "name": "NeuronDB at SenseLab",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "neurondb",
      "provider_url": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/neurondb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NEURONDB"
    }
  },
  "neurovault.collection": {
    "mappings": {
      "miriam": "neurovault.collection",
      "n2t": "neurovault.collection",
      "prefixcommons": "NEUROVAULT.COLLECTION"
    },
    "miriam": {
      "deprecated": false,
      "description": "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.",
      "homepage": "http://neurovault.org",
      "id": "00000635",
      "name": "NeuroVault Collection",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[1-9][0-9]*$",
      "prefix": "neurovault.collection",
      "provider_url": "https://neurovault.org/collections/$1",
      "sampleId": "3304"
    },
    "n2t": {
      "description": "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.",
      "example": "3304",
      "homepage": "http://neurovault.org",
      "name": "NeuroVault Collection",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[1-9][0-9]*$",
      "prefix": "neurovault.collection",
      "provider_url": "https://neurovault.org/collections/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/neurovault.collection/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NEUROVAULT.COLLECTION"
    }
  },
  "neurovault.image": {
    "mappings": {
      "miriam": "neurovault.image",
      "n2t": "neurovault.image",
      "prefixcommons": "NEUROVAULT.IMAGE"
    },
    "miriam": {
      "deprecated": false,
      "description": "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.",
      "homepage": "http://neurovault.org",
      "id": "00000638",
      "name": "NeuroVault Image",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[1-9][0-9]*$",
      "prefix": "neurovault.image",
      "provider_url": "https://neurovault.org/images/$1",
      "sampleId": "58788"
    },
    "n2t": {
      "description": "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.",
      "example": "58788",
      "homepage": "http://neurovault.org",
      "name": "NeuroVault",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[1-9][0-9]*$",
      "prefix": "neurovault.image",
      "provider_url": "https://neurovault.org/images/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/neurovault.image/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NEUROVAULT.IMAGE"
    }
  },
  "nextdb": {
    "mappings": {
      "miriam": "nextdb",
      "n2t": "nextdb",
      "ncbi": "NextDB",
      "prefixcommons": "NEXTDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.",
      "homepage": "http://nematode.lab.nig.ac.jp/",
      "id": "00000289",
      "name": "NEXTDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "nextdb",
      "provider_url": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1",
      "sampleId": "6b1"
    },
    "n2t": {
      "description": "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.",
      "example": "6b1",
      "homepage": "http://nematode.lab.nig.ac.jp/",
      "name": "NEXTDB at Shizuoka",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "nextdb",
      "provider_url": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1"
    },
    "ncbi": {
      "example": "CELK01662",
      "homepage": "http://nematode.lab.nig.ac.jp/",
      "name": "Nematode Expression Pattern DataBase",
      "prefix": "NextDB"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/nextdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NEXTDB"
    }
  },
  "nextprot": {
    "mappings": {
      "miriam": "nextprot",
      "n2t": "nextprot",
      "prefixcommons": "NEXTPROT",
      "uniprot": "neXtProt",
      "uniprot.database": "neXtProt"
    },
    "miriam": {
      "deprecated": false,
      "description": "neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases.",
      "homepage": "https://www.nextprot.org/",
      "id": "00000236",
      "name": "nextProt",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NX_\\w+",
      "prefix": "nextprot",
      "provider_url": "https://www.nextprot.org/db/entry/$1",
      "sampleId": "NX_O00165"
    },
    "n2t": {
      "description": "neXtProt is a resource on human proteins, and includes information such as proteins&#x2019; function, subcellular location, expression, interactions and role in diseases.",
      "example": "NX_O00165",
      "homepage": "https://www.nextprot.org/",
      "name": "nextProt at Swiss Institute of Bioinformatics",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NX_\\w+",
      "prefix": "nextprot",
      "provider_url": "https://www.nextprot.org/db/entry/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/nextprot/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NEXTPROT"
    },
    "synonyms": [
      "NXP"
    ],
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://www.nextprot.org/entry/%s",
      "identifier": "161",
      "link_is_explicit": "true",
      "name": "neXtProt; the human protein knowledge platform",
      "prefix": "neXtProt"
    },
    "wikidata": {
      "database": "Q6983890"
    }
  },
  "nextprot.family": {
    "example": "01406",
    "name": "neXtProt family",
    "pattern": "^\\d+$",
    "synonyms": [
      "NXPFA"
    ],
    "url": "https://www.nextprot.org/term/FA-$1"
  },
  "ngl": {
    "mappings": {
      "miriam": "ngl",
      "n2t": "ngl",
      "prefixcommons": "NGL"
    },
    "miriam": {
      "deprecated": false,
      "description": "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.",
      "homepage": "https://genelab-data.ndc.nasa.gov/genelab/",
      "id": "00000618",
      "name": "NASA GeneLab",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GLDS-\\d+$",
      "prefix": "ngl",
      "provider_url": "https://genelab-data.ndc.nasa.gov/genelab/accession/$1",
      "sampleId": "GLDS-141"
    },
    "n2t": {
      "description": "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.",
      "example": "GLDS-141",
      "homepage": "https://genelab-data.ndc.nasa.gov/genelab/",
      "name": "NASA GeneLab",
      "namespaceEmbeddedInLui": false,
      "pattern": "^GLDS-\\d+$",
      "prefix": "ngl",
      "provider_url": "https://genelab-data.ndc.nasa.gov/genelab/accession/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ngl/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NGL"
    }
  },
  "niaest": {
    "mappings": {
      "miriam": "niaest",
      "n2t": "niaest",
      "ncbi": "niaEST",
      "prefixcommons": "NIAEST"
    },
    "miriam": {
      "deprecated": false,
      "description": "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.",
      "homepage": "http://lgsun.grc.nia.nih.gov/cDNA/",
      "id": "00000305",
      "name": "NIAEST",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w\\d{4}\\w\\d{2}(\\-[35])?$",
      "prefix": "niaest",
      "provider_url": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1",
      "sampleId": "J0705A10"
    },
    "n2t": {
      "description": "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.",
      "example": "J0705A10",
      "homepage": "http://lgsun.grc.nia.nih.gov/cDNA/",
      "name": "NIAEST at National Institute on Aging",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w\\d{4}\\w\\d{2}(\\-[35])?$",
      "prefix": "niaest",
      "provider_url": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"
    },
    "ncbi": {
      "example": "L0304H12-3",
      "homepage": "http://esbank.nia.nih.gov/",
      "name": "NIA Mouse cDNA Project",
      "prefix": "niaEST"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/niaest/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NIAEST"
    }
  },
  "nif_cell": {
    "bioportal": {
      "name": "Neuroscience Information Framework (NIF) Cell Ontology",
      "prefix": "NIFCELL"
    },
    "mappings": {
      "bioportal": "NIFCELL",
      "obofoundry": "nif_cell",
      "prefixcommons": "NIF_CELL"
    },
    "obofoundry": {
      "contact": "smtifahim@gmail.com",
      "contact.label": "Fahim Imam",
      "deprecated": true,
      "description": "Neuronal cell types",
      "homepage": "http://neuinfo.org/",
      "name": "NIF Cell",
      "prefix": "nif_cell"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/NIF_CELL_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "NIF_CELL"
    }
  },
  "nif_dysfunction": {
    "mappings": {
      "obofoundry": "nif_dysfunction",
      "prefixcommons": "NIF_DYSFUNCTION"
    },
    "obofoundry": {
      "contact": "smtifahim@gmail.com",
      "contact.label": "Fahim Imam",
      "deprecated": true,
      "homepage": "http://neuinfo.org/",
      "name": "NIF Dysfunction",
      "prefix": "nif_dysfunction"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "NIF_DYSFUNCTION"
    }
  },
  "nif_grossanatomy": {
    "mappings": {
      "obofoundry": "nif_grossanatomy",
      "prefixcommons": "NIF_GROSSANATOMY"
    },
    "obofoundry": {
      "contact": "smtifahim@gmail.com",
      "contact.label": "Fahim Imam",
      "deprecated": true,
      "homepage": "http://neuinfo.org/",
      "name": "NIF Gross Anatomy",
      "prefix": "nif_grossanatomy"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "NIF_GROSSANATOMY"
    }
  },
  "nist": {
    "homepage": "https://webbook.nist.gov/chemistry/",
    "name": "NIST Chemistry WebBook",
    "synonyms": [
      "NIST Chemistry WebBook",
      "NIST"
    ]
  },
  "nlm": {
    "biolink": {
      "formatter": "https://www.ncbi.nlm.nih.gov/nlmcatalog/?term=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "NLMID"
    },
    "example": "101775319",
    "mappings": {
      "biolink": "NLMID"
    },
    "name": "National Library of Medicine (NLM) Catalog",
    "url": "https://www.ncbi.nlm.nih.gov/nlmcatalog/$1"
  },
  "nlxanat": {
    "example": "090201",
    "name": "NeuroLex Anatomy",
    "url": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1"
  },
  "nlxdys": {
    "appears_in": [
      "mondo"
    ],
    "example": "20090303",
    "name": "NeuroLex Dysfunction",
    "url": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1"
  },
  "nmdc": {
    "contact": "donny@polyneme.xyz",
    "description": "An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem.",
    "example": "y3ax-8bq3-60",
    "homepage": "https://microbiomedata.org/",
    "name": "National Microbiome Data Collaborative",
    "pattern": "^[\\w\\-.]{3,}$",
    "url": "https://drs.microbiomedata.org/objects/$1",
    "wikidata": {
      "database": "Q107698738"
    }
  },
  "nmr": {
    "bioportal": {
      "name": "NMR-Controlled Vocabulary",
      "prefix": "NMR"
    },
    "download_owl": "https://nmrml.org/cv/stable/nmrCV.owl",
    "mappings": {
      "bioportal": "NMR",
      "miriam": "nmr",
      "n2t": "nmr",
      "obofoundry": "nmr",
      "ols": "nmrcv",
      "prefixcommons": "NMR"
    },
    "miriam": {
      "deprecated": false,
      "description": "nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/nmrcv",
      "id": "00000639",
      "name": "Nuclear Magnetic Resonance Controlled Vocabulary",
      "namespaceEmbeddedInLui": true,
      "pattern": "^NMR:\\d+$",
      "prefix": "nmr",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1",
      "sampleId": "1000003"
    },
    "n2t": {
      "description": "nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.",
      "example": "1000003",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/nmrcv",
      "name": "NMR through OLS",
      "namespaceEmbeddedInLui": true,
      "pattern": "^NMR:\\d+$",
      "prefix": "nmr",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1"
    },
    "obofoundry": {
      "contact": "schober@imbi.uni-freiburg.de",
      "contact.label": "Schober Daniel",
      "deprecated": true,
      "description": "Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation.",
      "download.owl": "http://purl.obolibrary.org/obo/nmr.owl",
      "homepage": "http://msi-ontology.sourceforge.net/",
      "name": "NMR-instrument specific component of metabolomics investigations",
      "prefix": "nmr"
    },
    "ols": {
      "description": "This artefact is an MSI-approved controlled vocabulary primarily developed under COSMOS EU and PhenoMeNal EU governance. The nmrCV is supporting the nmrML XML format with standardized terms. nmrML is a vendor agnostic open access NMR raw data standard. Its primaly role is analogous to the mzCV for the PSI-approved mzML XML format. It uses BFO2.0 as its Top level. This CV was derived from two predecessors (The NMR CV from the David Wishart Group, developed by Joseph Cruz) and the MSI nmr CV developed by Daniel Schober at the EBI.  This simple taxonomy of terms (no DL semantics used) serves the nuclear magnetic resonance markup language (nmrML) with meaningful descriptors to amend the nmrML xml file with CV terms. Metabolomics scientists are encouraged to use this CV to annotrate their raw and experimental context data, i.e. within nmrML. The approach to have an exchange syntax mixed of an xsd and CV stems from the PSI mzML effort. The reason to branch out from an xsd into a CV is, that in areas where the terminology is likely to change faster than the nmrML xsd could be updated and aligned, an externally and decentrallised maintained CV can accompensate for such dynamics in a more flexible way. A second reason for this set-up is that semantic validity of CV terms used in an nmrML XML instance (allowed CV terms, position/relation to each other, cardinality) can be validated by rule-based proprietary validators:  By means of cardinality specifications and XPath expressions defined in an XML mapping file (an instances of the CvMappingRules.xsd ), one can define what ontology terms are allowed in a specific location of the data model.",
      "download": "http://nmrml.org/cv/stable/nmrCV.owl",
      "homepage": "http://nmrml.org/cv/",
      "name": "nuclear magnetic resonance CV",
      "prefix": "nmrcv",
      "version": "1.1.0"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/NMR_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "NMR"
    },
    "synonyms": [
      "nmrcv"
    ]
  },
  "nmrshiftdb2": {
    "mappings": {
      "miriam": "nmrshiftdb2"
    },
    "miriam": {
      "deprecated": false,
      "description": "NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties.",
      "homepage": "https://nmrshiftdb.nmr.uni-koeln.de",
      "id": "00000748",
      "name": "NMR Shift Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "nmrshiftdb2",
      "provider_url": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1",
      "sampleId": "234"
    }
  },
  "nomen": {
    "bioportal": {
      "name": "NOMEN - A nomenclatural ontology for biological names",
      "prefix": "NOMEN"
    },
    "mappings": {
      "bioportal": "NOMEN",
      "obofoundry": "nomen",
      "ols": "nomen"
    },
    "obofoundry": {
      "contact": "diapriid@gmail.com",
      "contact.label": "Matt Yoder",
      "deprecated": false,
      "description": "NOMEN is a nomenclatural ontology for biological names (not concepts).  It encodes the goverened rules of nomenclature.",
      "download.owl": "http://purl.obolibrary.org/obo/nomen.owl",
      "homepage": "https://github.com/SpeciesFileGroup/nomen",
      "license": "CC-0",
      "name": "NOMEN - A nomenclatural ontology for biological names",
      "prefix": "nomen"
    },
    "ols": {
      "description": "NOMEN is a nomenclatural ontology for biological names (not concepts).  It encodes the goverened rules of nomenclature.",
      "download": "http://purl.obolibrary.org/obo/nomen.owl",
      "homepage": "https://github.com/SpeciesFileGroup/nomen",
      "name": "NOMEN - A nomenclatural ontology for biological names",
      "prefix": "nomen",
      "version": "2019-04-17"
    }
  },
  "noncodev3": {
    "mappings": {
      "miriam": "noncodev3",
      "n2t": "noncodev3",
      "prefixcommons": "NONCODEV3"
    },
    "miriam": {
      "deprecated": false,
      "description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.",
      "homepage": "http://www.noncode.org/",
      "id": "00000248",
      "name": "NONCODE v3",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "noncodev3",
      "provider_url": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1",
      "sampleId": "377550"
    },
    "n2t": {
      "description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.",
      "example": "377550",
      "homepage": "http://www.noncode.org/",
      "name": "NONCODE at Chinese Academy of Sciences",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "noncodev3",
      "provider_url": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/noncodev3/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NONCODEV3"
    }
  },
  "noncodev4.gene": {
    "mappings": {
      "miriam": "noncodev4.gene",
      "n2t": "noncodev4.gene",
      "prefixcommons": "NONCODEV4.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.",
      "homepage": "http://www.bioinfo.org/NONCODEv4/",
      "id": "00000480",
      "name": "NONCODE v4 Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NONHSAG\\d{5}$",
      "prefix": "noncodev4.gene",
      "provider_url": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1",
      "sampleId": "NONHSAG00001"
    },
    "n2t": {
      "description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.",
      "example": "NONHSAG00001",
      "homepage": "http://www.bioinfo.org/NONCODEv4/",
      "name": "NONCODE v4 Gene at Chinese Academy of Sciences",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NONHSAG\\d{5}$",
      "prefix": "noncodev4.gene",
      "provider_url": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/noncodev4.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NONCODEV4.GENE"
    }
  },
  "noncodev4.rna": {
    "mappings": {
      "miriam": "noncodev4.rna",
      "n2t": "noncodev4.rna",
      "prefixcommons": "NONCODEV4.RNA"
    },
    "miriam": {
      "deprecated": false,
      "description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.",
      "homepage": "http://www.bioinfo.org/NONCODEv4/",
      "id": "00000481",
      "name": "NONCODE v4 Transcript",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NONHSAT\\d{6}$",
      "prefix": "noncodev4.rna",
      "provider_url": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1",
      "sampleId": "NONHSAT000001"
    },
    "n2t": {
      "description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.",
      "example": "NONHSAT000001",
      "homepage": "http://www.bioinfo.org/NONCODEv4/",
      "name": "NONCODE v4 Transcript at Chinese Academy of Sciences",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NONHSAT\\d{6}$",
      "prefix": "noncodev4.rna",
      "provider_url": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/noncodev4.rna/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NONCODEV4.RNA"
    }
  },
  "norine": {
    "mappings": {
      "miriam": "norine",
      "n2t": "norine",
      "prefixcommons": "NORINE"
    },
    "miriam": {
      "deprecated": false,
      "description": "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.",
      "homepage": "http://bioinfo.lifl.fr/norine/",
      "id": "00000498",
      "name": "NORINE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NOR\\d+$",
      "prefix": "norine",
      "provider_url": "http://bioinfo.lifl.fr/norine/result.jsp?ID=$1",
      "sampleId": "NOR00681"
    },
    "n2t": {
      "description": "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.",
      "example": "NOR00681",
      "homepage": "http://bioinfo.lifl.fr/norine/",
      "name": "NORINE at Computer Science Laboratory of Lille",
      "namespaceEmbeddedInLui": false,
      "pattern": "^NOR\\d+$",
      "prefix": "norine",
      "provider_url": "http://bioinfo.lifl.fr/norine/result.jsp?ID=$1"
    },
    "name": "Nonribosomal Peptides Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/norine/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NORINE"
    }
  },
  "npass": {
    "example": "NPC139585",
    "name": "Natural Product Activity and Species Source Database"
  },
  "nuclearbd": {
    "mappings": {
      "miriam": "nuclearbd",
      "n2t": "nuclearbd",
      "prefixcommons": "NUCLEARBD"
    },
    "miriam": {
      "deprecated": false,
      "description": "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.",
      "homepage": "http://www.receptors.org/nucleardb/",
      "id": "00000356",
      "name": "NucleaRDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+\\_\\w+$",
      "prefix": "nuclearbd",
      "provider_url": "http://www.receptors.org/nucleardb/proteins/$1",
      "sampleId": "prgr_human"
    },
    "n2t": {
      "description": "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.",
      "example": "prgr_human",
      "homepage": "http://www.receptors.org/nucleardb/",
      "name": "NucleaRDB at Radboud University Nijmegen Medical Centre",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+\\_\\w+$",
      "prefix": "nuclearbd",
      "provider_url": "http://www.receptors.org/nucleardb/proteins/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/nuclearbd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "NUCLEARBD"
    }
  },
  "oa": {
    "bioportal": {
      "name": "Web Annotation Ontology",
      "prefix": "OA"
    },
    "homepage": "http://www.w3.org/ns/oa",
    "mappings": {
      "bioportal": "OA",
      "prefixcommons": "oa"
    },
    "name": "Web Annotation Ontology",
    "prefixcommons": {
      "formatter": "http://www.w3.org/ns/oa#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "oa"
    },
    "url": "http://www.w3.org/ns/oa#$1"
  },
  "oae": {
    "bioportal": {
      "name": "Ontology of Adverse Events",
      "prefix": "OAE"
    },
    "mappings": {
      "bioportal": "OAE",
      "obofoundry": "oae",
      "ols": "oae",
      "prefixcommons": "OAE"
    },
    "obofoundry": {
      "contact": "yongqunh@med.umich.edu",
      "contact.label": "Yongqunh He",
      "deprecated": false,
      "description": "A biomedical ontology in the domain of adverse events",
      "download.owl": "http://purl.obolibrary.org/obo/oae.owl",
      "homepage": "https://github.com/OAE-ontology/OAE/",
      "license": "CC-BY",
      "name": "Ontology of Adverse Events",
      "prefix": "oae"
    },
    "ols": {
      "description": "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning.  OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc.",
      "download": "http://purl.obolibrary.org/obo/oae.owl",
      "homepage": "https://github.com/OAE-ontology/OAE/",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "OAE: Ontology of Adverse Events",
      "prefix": "oae",
      "version": "1.2.38"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OAE_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OAE"
    }
  },
  "oarcs": {
    "bioportal": {
      "name": "Ontology of Arthropod Circulatory Systems",
      "prefix": "OARCS"
    },
    "mappings": {
      "bioportal": "OARCS",
      "obofoundry": "oarcs",
      "ols": "oarcs",
      "prefixcommons": "OARCS"
    },
    "obofoundry": {
      "contact": "mjyoder@illinois.edu",
      "contact.label": "Matt Yoder",
      "deprecated": false,
      "description": "OArCS is an ontology describing the Arthropod ciruclatory system.",
      "download.owl": "http://purl.obolibrary.org/obo/oarcs.owl",
      "homepage": "https://github.com/aszool/oarcs",
      "license": "CC BY 3.0",
      "name": "Ontology of Arthropod Circulatory Systems",
      "prefix": "oarcs"
    },
    "ols": {
      "description": "OArCS is an ontology describing the Arthropod ciruclatory system.",
      "download": "http://purl.obolibrary.org/obo/oarcs.owl",
      "homepage": "https://github.com/aszool/oarcs",
      "name": "Ontology of Arthropod Circulatory Systems",
      "prefix": "oarcs",
      "version": "2019-04-18",
      "version.iri": "http://purl.obolibrary.org/obo/hao/2019-04-18/hao.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OARCS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OARCS"
    }
  },
  "oba": {
    "bioportal": {
      "name": "Ontology of Biological Attributes",
      "prefix": "OBA"
    },
    "example": "0000001",
    "mappings": {
      "bioportal": "OBA",
      "obofoundry": "oba",
      "ols": "oba",
      "prefixcommons": "OBA"
    },
    "obofoundry": {
      "contact": "cjmungall@lbl.gov",
      "contact.label": "Chris Mungall",
      "deprecated": false,
      "description": "A collection of biological attributes (traits) covering all kingdoms of life.",
      "download.obo": "http://purl.obolibrary.org/obo/oba.obo",
      "download.owl": "http://purl.obolibrary.org/obo/oba.owl",
      "homepage": "https://github.com/obophenotype/bio-attribute-ontology",
      "license": "CC-0",
      "name": "Ontology of Biological Attributes",
      "prefix": "oba"
    },
    "ols": {
      "description": "A collection of biological attributes (traits) covering all kingdoms of life.",
      "download": "http://purl.obolibrary.org/obo/oba.owl",
      "homepage": "https://github.com/obophenotype/bio-attribute-ontology",
      "name": "Ontology of Biological Attributes",
      "prefix": "oba",
      "version": "2019-05-22"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OBA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OBA"
    }
  },
  "obcs": {
    "bioportal": {
      "name": "Ontology of Biological and Clinical Statistics",
      "prefix": "OBCS"
    },
    "mappings": {
      "bioportal": "OBCS",
      "obofoundry": "obcs",
      "ols": "obcs",
      "prefixcommons": "OBCS"
    },
    "obofoundry": {
      "contact": "jiezheng@pennmedicine.upenn.edu",
      "contact.label": "Jie Zheng",
      "deprecated": false,
      "description": "A biomedical ontology in the domain of biological and clinical statistics.",
      "download.owl": "http://purl.obolibrary.org/obo/obcs.owl",
      "homepage": "https://github.com/obcs/obcs",
      "license": "CC-BY",
      "name": "Ontology of Biological and Clinical Statistics",
      "prefix": "obcs"
    },
    "ols": {
      "description": "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012.  ",
      "download": "http://purl.obolibrary.org/obo/obcs.owl",
      "homepage": "https://github.com/obcs/obcs",
      "name": "Ontology of Biological and Clinical Statistics",
      "prefix": "obcs",
      "version": "101",
      "version.iri": "http://purl.obolibrary.org/obo/obcs/2018-02-22/obcs.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OBCS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OBCS"
    }
  },
  "obi": {
    "bioportal": {
      "name": "Ontology for Biomedical Investigations",
      "prefix": "OBI"
    },
    "download_obo": "https://github.com/obi-ontology/obi/raw/master/views/obi.obo",
    "example": "0400109",
    "go": {
      "homepage": "http://obi-ontology.org/",
      "name": "Ontology for Biomedical Investigations",
      "prefix": "OBI"
    },
    "mappings": {
      "bioportal": "OBI",
      "go": "OBI",
      "miriam": "obi",
      "n2t": "obi",
      "obofoundry": "obi",
      "ols": "obi",
      "prefixcommons": "OBI"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).",
      "homepage": "http://www.ontobee.org/",
      "id": "00000127",
      "name": "Ontology for Biomedical Investigations",
      "namespaceEmbeddedInLui": false,
      "pattern": "(^OBI:\\d{7}$)|(^OBI_\\d{7}$)",
      "prefix": "obi",
      "provider_url": "http://purl.obolibrary.org/obo/$1",
      "sampleId": "OBI_0000070"
    },
    "n2t": {
      "description": "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).",
      "example": "OBI_0000070",
      "homepage": "http://www.ontobee.org/",
      "name": "OBI through Ontobee",
      "namespaceEmbeddedInLui": false,
      "pattern": "(^OBI:\\d{7}$)|(^OBI_\\d{7}$)",
      "prefix": "obi",
      "provider_url": "http://purl.obolibrary.org/obo/$1"
    },
    "obofoundry": {
      "contact": "bpeters@lji.org",
      "contact.label": "Bjoern Peters",
      "deprecated": false,
      "description": "An integrated ontology for the description of life-science and clinical investigations",
      "download.obo": "http://purl.obolibrary.org/obo/obi.obo",
      "download.owl": "http://purl.obolibrary.org/obo/obi.owl",
      "homepage": "http://obi-ontology.org",
      "license": "CC-BY 4.0",
      "name": "Ontology for Biomedical Investigations",
      "prefix": "obi"
    },
    "ols": {
      "description": "The Ontology for Biomedical Investigations (OBI) is build in a collaborative, international effort and will serve as a resource for annotating biomedical investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. This ontology arose from the Functional Genomics Investigation Ontology (FuGO) and will contain both terms that are common to all biomedical investigations, including functional genomics investigations and those that are more domain specific.",
      "download": "http://purl.obolibrary.org/obo/obi.owl",
      "homepage": "http://obi-ontology.org",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology for Biomedical Investigations",
      "prefix": "obi",
      "version": "2021-04-06",
      "version.iri": "http://purl.obolibrary.org/obo/obi/2021-04-06/obi.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OBI_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OBI"
    },
    "url": "http://purl.obolibrary.org/obo/OBI_$1"
  },
  "obib": {
    "bioportal": {
      "name": "Ontology for Biobanking",
      "prefix": "OBIB"
    },
    "mappings": {
      "bioportal": "OBIB",
      "obofoundry": "obib",
      "ols": "obib",
      "prefixcommons": "OBIB"
    },
    "obofoundry": {
      "contact": "jiezheng@pennmedicine.upenn.edu",
      "contact.label": "Jie Zheng",
      "deprecated": false,
      "description": "An ontology built for annotation and modeling of biobank repository and biobanking administration",
      "download.owl": "http://purl.obolibrary.org/obo/obib.owl",
      "homepage": "https://github.com/biobanking/biobanking",
      "license": "CC-BY",
      "name": "Ontology for Biobanking",
      "prefix": "obib"
    },
    "ols": {
      "description": "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology.",
      "download": "http://purl.obolibrary.org/obo/obib.owl",
      "homepage": "https://github.com/biobanking/biobanking",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology for BIoBanking (OBIB)",
      "prefix": "obib",
      "version": "2021-02-02",
      "version.iri": "http://purl.obolibrary.org/obo/obib/2021-02-02/obib.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OBIB_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OBIB"
    }
  },
  "obo": {
    "mappings": {
      "prefixcommons": "OBO"
    },
    "name": "Internal OBO and PyOBO Relations",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OBO"
    }
  },
  "oboinowl": {
    "download_obo": "https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.obo",
    "example": "DbXref",
    "homepage": "https://github.com/geneontology/go-ontology/tree/master/contrib",
    "mappings": {
      "prefixcommons": "oboInOwl"
    },
    "name": "OBO in OWL",
    "prefixcommons": {
      "formatter": "http://www.geneontology.org/formats/oboInOwl#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "oboInOwl"
    },
    "url": "http://www.geneontology.org/formats/oboInOwl#$1"
  },
  "occ": {
    "mappings": {
      "miriam": "occ",
      "n2t": "occ"
    },
    "miriam": {
      "deprecated": false,
      "description": "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law.",
      "homepage": "https://w3id.org/oc/corpus",
      "id": "00000693",
      "name": "OpenCitations Corpus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z][a-z]/[0-9]+$",
      "prefix": "occ",
      "provider_url": "https://w3id.org/oc/corpus/$1",
      "sampleId": "br/1"
    },
    "n2t": {
      "description": "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law.",
      "example": "br/1",
      "homepage": "https://w3id.org/oc/corpus",
      "name": "OpenCitations Corpus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z][a-z]/[0-9]+$",
      "prefix": "occ",
      "provider_url": "https://w3id.org/oc/corpus/$1"
    }
  },
  "oci": {
    "mappings": {
      "miriam": "oci",
      "n2t": "oci",
      "prefixcommons": "OCI"
    },
    "miriam": {
      "deprecated": false,
      "description": "Each OCI (Open Citation Identifier) has a simple structure: oci:number-number, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entitiy - see https://opencitations.wordpress.com/2018/02/19/citations-as-first-class-data-entities-introduction/ for additional information.\r\n\r\nOCIs for citations stored within the OpenCitations Corpus are constructed by combining the OpenCitations Corpus local identifiers for the citing and cited bibliographic resources, separating them with a dash. For example, oci:2544384-7295288 is a valid OCI for the citation between two papers stored within the OpenCitations Corpus.\r\n\r\nOCIs can also be created for bibliographic resources described in an external bibliographic database, if they are similarly identified there by identifiers having a unique numerical part. For example, the OCI for the citation that exists between Wikidata resources Q27931310 and Q22252312 is oci:01027931310–01022252312.\r\n\r\nOCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings.",
      "homepage": "http://opencitations.net",
      "id": "00000660",
      "name": "OCI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+-[0-9]+$",
      "prefix": "oci",
      "provider_url": "https://w3id.org/oc/oci/$1",
      "sampleId": "1-18"
    },
    "n2t": {
      "description": "Each OCI (Open Citation Identifier) has a simple structure: oci:number-number, where &#x201C;oci:&#x201D; is the identifier prefix, and is used to identify a citation as a first-class data entitiy - see https://opencitations.wordpress.com/2018/02/19/citations-as-first-class-data-entities-introduction/ for additional information.  OCIs for citations stored within the OpenCitations Corpus are constructed by combining the OpenCitations Corpus local identifiers for the citing and cited bibliographic resources, separating them with a dash. For example, oci:2544384-7295288 is a valid OCI for the citation between two papers stored within the OpenCitations Corpus.  OCIs can also be created for bibliographic resources described in an external bibliographic database, if they are similarly identified there by identifiers having a unique numerical part. For example, the OCI for the citation that exists between Wikidata resources Q27931310 and Q22252312 is oci:01027931310&#x2013;01022252312.  OCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings.",
      "example": "1-18",
      "homepage": "http://opencitations.net",
      "name": "OpenCitations",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+-[0-9]+$",
      "prefix": "oci",
      "provider_url": "https://w3id.org/oc/oci/$1"
    },
    "name": "Open Citation Identifier",
    "prefixcommons": {
      "formatter": "http://identifiers.org/oci/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "OCI"
    }
  },
  "ocid": {
    "banana": "ocid",
    "mappings": {
      "miriam": "ocid"
    },
    "miriam": {
      "deprecated": false,
      "description": "'ocid' stands for \"Ontology Concept Identifiers\" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology.",
      "homepage": "https://www.sciwalker.com",
      "id": "00000738",
      "name": "Ontology Concept Identifiers",
      "namespaceEmbeddedInLui": true,
      "pattern": "ocid:[0-9]{12}",
      "prefix": "ocid",
      "provider_url": "https://www.sciwalker.com/sciwalker/faces/ociddata.xhtml?ocid=$1",
      "sampleId": "190000021540"
    }
  },
  "oclc": {
    "mappings": {
      "miriam": "oclc",
      "n2t": "oclc",
      "prefixcommons": "OCLC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information.",
      "homepage": "https://www.oclc.org/en/about.html",
      "id": "00000669",
      "name": "Online Computer Library Center (OCLC) WorldCat",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "oclc",
      "provider_url": "https://www.worldcat.org/oclc/$1",
      "sampleId": "634515043"
    },
    "n2t": {
      "description": "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information.",
      "example": "634515043",
      "homepage": "https://www.oclc.org/en/about.html",
      "name": "Online Computer Library Center (OCLC) WorldCat",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+$",
      "prefix": "oclc",
      "provider_url": "https://www.worldcat.org/oclc/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/oclc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "OCLC"
    }
  },
  "odam": {
    "mappings": {
      "miriam": "odam"
    },
    "miriam": {
      "deprecated": false,
      "description": "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed.",
      "homepage": "https://metabolome.cgfb.u-bordeaux.fr/",
      "id": "00000722",
      "name": "Open Data for Access and Mining",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "odam",
      "provider_url": "http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1",
      "sampleId": "frim1"
    }
  },
  "odc.sci": {
    "mappings": {
      "miriam": "odc.sci"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data.",
      "homepage": "https://odc-sci.org",
      "id": "00000804",
      "name": "Open Data Commons for Spinal Cord Injury",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]*$",
      "prefix": "odc.sci",
      "provider_url": "https://odc-sci.org/data/$1",
      "sampleId": "602"
    }
  },
  "odc.tbi": {
    "mappings": {
      "miriam": "odc.tbi"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data.",
      "homepage": "https://odc-tbi.org",
      "id": "00000816",
      "name": "Open Data Commons for Traumatic Brain Injury",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]*$",
      "prefix": "odc.tbi",
      "provider_url": "https://odc-tbi.org/data/$1",
      "sampleId": "408"
    }
  },
  "odor": {
    "mappings": {
      "miriam": "odor",
      "n2t": "odor",
      "prefixcommons": "ODOR"
    },
    "miriam": {
      "deprecated": false,
      "description": "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors",
      "homepage": "http://senselab.med.yale.edu/OdorDB",
      "id": "00000500",
      "name": "Odor Molecules DataBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "odor",
      "provider_url": "http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5",
      "sampleId": "74"
    },
    "n2t": {
      "description": "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors",
      "example": "74",
      "homepage": "http://senselab.med.yale.edu/OdorDB",
      "name": "Odor Molecules DataBase at Yale University School of Medicine",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "odor",
      "provider_url": "http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/odor/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ODOR"
    }
  },
  "ogg": {
    "bioportal": {
      "name": "Ontology of Genes and Genomes",
      "prefix": "OGG"
    },
    "mappings": {
      "bioportal": "OGG",
      "obofoundry": "ogg",
      "ols": "ogg",
      "prefixcommons": "OGG"
    },
    "obofoundry": {
      "contact": "yongqunh@med.umich.edu",
      "contact.label": "Yongqun Oliver He",
      "deprecated": false,
      "description": "A formal ontology of genes and genomes of biological organisms.",
      "download.owl": "http://purl.obolibrary.org/obo/ogg.owl",
      "homepage": "https://bitbucket.org/hegroup/ogg",
      "license": "CC-BY",
      "name": "The Ontology of Genes and Genomes",
      "prefix": "ogg"
    },
    "ols": {
      "description": "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. ",
      "download": "http://purl.obolibrary.org/obo/ogg.owl",
      "homepage": "https://bitbucket.org/hegroup/ogg",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "OGG: Ontology of Genes and Genomes",
      "prefix": "ogg",
      "version": "1.0.59"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OGG_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OGG"
    }
  },
  "ogi": {
    "bioportal": {
      "name": "Ontology for Genetic Interval",
      "prefix": "OGI"
    },
    "mappings": {
      "bioportal": "OGI",
      "obofoundry": "ogi",
      "ols": "ogi",
      "prefixcommons": "OGI"
    },
    "obofoundry": {
      "deprecated": false,
      "description": "An ontology that formalizes the genomic element by defining an upper class genetic interval",
      "download.owl": "http://purl.obolibrary.org/obo/ogi.owl",
      "homepage": "https://code.google.com/p/ontology-for-genetic-interval/",
      "name": "Ontology for genetic interval",
      "prefix": "ogi"
    },
    "ols": {
      "description": "OGI formalized the genomic element by defining an upper class 'genetic interval'.\n\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.\" \n\nRelated paper:\n\n1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)\nYu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)\nYu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)\n\n\n",
      "download": "http://purl.obolibrary.org/obo/ogi.owl",
      "homepage": "https://code.google.com/p/ontology-for-genetic-interval/",
      "name": "Ontology for genetic interval",
      "prefix": "ogi",
      "version": "2.0"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OGI_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OGI"
    }
  },
  "ogms": {
    "bioportal": {
      "name": "Ontology for General Medical Science",
      "prefix": "OGMS"
    },
    "example": "0000031",
    "mappings": {
      "bioportal": "OGMS",
      "obofoundry": "ogms",
      "ols": "ogms",
      "prefixcommons": "OGMS"
    },
    "not_available_as_obo": true,
    "obofoundry": {
      "contact": "baeverma@jcvi.org",
      "contact.label": "Brian Aevermann",
      "deprecated": false,
      "description": "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities",
      "download.owl": "http://purl.obolibrary.org/obo/ogms.owl",
      "homepage": "https://github.com/OGMS/ogms",
      "license": "CC-BY",
      "name": "Ontology for General Medical Science",
      "prefix": "ogms"
    },
    "ols": {
      "description": "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology.",
      "download": "http://purl.obolibrary.org/obo/ogms.owl",
      "homepage": "https://github.com/OGMS/ogms",
      "license": "url: http://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology for General Medical Science",
      "prefix": "ogms",
      "version": "2021-04-20",
      "version.iri": "https://github.com/OGMS/ogms/releases/tag/2021-04-20"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OGMS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OGMS"
    },
    "wikidata": {
      "database": "Q4866972"
    }
  },
  "ogsf": {
    "bioportal": {
      "name": "Ontology for Genetic Susceptibility Factor",
      "prefix": "OGSF"
    },
    "mappings": {
      "bioportal": "OGSF",
      "obofoundry": "ogsf",
      "ols": "ogsf",
      "prefixcommons": "OGSF"
    },
    "obofoundry": {
      "contact": "linikujp@gmail.com",
      "contact.label": "Asiyah Yu Lin",
      "deprecated": false,
      "description": "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process.",
      "download.owl": "http://purl.obolibrary.org/obo/ogsf.owl",
      "homepage": "https://github.com/linikujp/OGSF",
      "license": "CC-BY 3.0",
      "name": "Ontology of Genetic Susceptibility Factor",
      "prefix": "ogsf"
    },
    "ols": {
      "description": "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process.",
      "download": "http://purl.obolibrary.org/obo/ogsf.owl",
      "homepage": "https://code.google.com/p/ogsf/",
      "license": "New BSD license",
      "name": "Ontology of Genetic Susceptibility Factor",
      "prefix": "ogsf",
      "version": "2.0"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OGSF_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OGSF"
    }
  },
  "ohd": {
    "bioportal": {
      "name": "The Oral Health and Disease Ontology",
      "prefix": "OHD"
    },
    "mappings": {
      "bioportal": "OHD",
      "obofoundry": "ohd",
      "ols": "ohd",
      "prefixcommons": "OHD"
    },
    "obofoundry": {
      "contact": "alanruttenberg@gmail.com",
      "contact.label": "Alan Ruttenberg",
      "deprecated": false,
      "description": "The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records.",
      "download.owl": "http://purl.obolibrary.org/obo/ohd.owl",
      "homepage": "https://purl.obolibrary.org/obo/ohd/home",
      "license": "CC-BY",
      "name": "The Oral Health and Disease Ontology",
      "prefix": "ohd"
    },
    "ols": {
      "description": "The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records.",
      "download": "http://purl.obolibrary.org/obo/ohd.owl",
      "homepage": "https://purl.obolibrary.org/obo/ohd/home",
      "name": "The Oral Health and Disease Ontology",
      "prefix": "ohd",
      "version": "2016-06-27",
      "version.iri": "http://purl.obolibrary.org/obo/2016-06-27/ohd-inferred.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OHD_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OHD"
    }
  },
  "ohmi": {
    "bioportal": {
      "name": "Ontology of Host-Microbe Interactions",
      "prefix": "OHMI"
    },
    "mappings": {
      "bioportal": "OHMI",
      "obofoundry": "ohmi",
      "ols": "ohmi",
      "prefixcommons": "OHMI"
    },
    "obofoundry": {
      "contact": "yongqunh@med.umich.edu",
      "contact.label": "Yongqun Oliver He",
      "deprecated": false,
      "description": "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions.",
      "download.owl": "http://purl.obolibrary.org/obo/ohmi.owl",
      "homepage": "https://github.com/ohmi-ontology/ohmi",
      "license": "CC-BY",
      "name": "Ontology of Host-Microbiome Interactions",
      "prefix": "ohmi"
    },
    "ols": {
      "description": "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.",
      "download": "http://purl.obolibrary.org/obo/ohmi.owl",
      "homepage": "https://github.com/ohmi-ontology/ohmi",
      "name": "OHMI: Ontology of Host-Microbiome Interactions",
      "prefix": "ohmi",
      "version": "2019-09-17",
      "version.iri": "http://purl.obolibrary.org/obo/ohmi/2019-09-17/ohmi.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OHMI_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OHMI"
    }
  },
  "ohpi": {
    "bioportal": {
      "name": "Ontology of Host-Pathogen Interactions",
      "prefix": "OHPI"
    },
    "mappings": {
      "bioportal": "OHPI",
      "obofoundry": "ohpi",
      "ols": "ohpi"
    },
    "obofoundry": {
      "contact": "edong@umich.edu",
      "contact.label": "Edison Ong",
      "deprecated": false,
      "description": "OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is developed to represent manually curated HPI knowledge available in the PHIDIAS resource.",
      "download.owl": "http://purl.obolibrary.org/obo/ohpi.owl",
      "homepage": "https://github.com/OHPI/ohpi",
      "license": "CC-BY",
      "name": "Ontology of Host Pathogen Interactions",
      "prefix": "ohpi"
    },
    "ols": {
      "description": "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration).",
      "download": "http://purl.obolibrary.org/obo/ohpi.owl",
      "homepage": "https://github.com/OHPI/ohpi",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "OHPI: Ontology of Host-Pathogen Interactions",
      "prefix": "ohpi",
      "version": "2019-10-02",
      "version.iri": "http://purl.obolibrary.org/obo/ohpi/releases/2019-09-30"
    }
  },
  "oid": {
    "mappings": {
      "miriam": "oid",
      "n2t": "oid"
    },
    "miriam": {
      "deprecated": false,
      "description": "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.",
      "homepage": "http://www.oid-info.com/introduction.htm",
      "id": "00000673",
      "name": "OID Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[\\d.]+$",
      "prefix": "oid",
      "provider_url": "http://www.oid-info.com/cgi-bin/display?oid=$1&submit=Display&action=display",
      "sampleId": "2.16.840"
    },
    "n2t": {
      "description": "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.",
      "example": "2.16.840",
      "homepage": "http://www.oid-info.com/introduction.htm",
      "name": "OID Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[\\d.]+$",
      "prefix": "oid",
      "provider_url": "http://www.oid-info.com/cgi-bin/display?oid=$1&submit=Display&action=display"
    }
  },
  "olatdv": {
    "bioportal": {
      "name": "Medaka Developmental Stages",
      "prefix": "OLATDV"
    },
    "example": "0000210",
    "mappings": {
      "bioportal": "OLATDV",
      "obofoundry": "olatdv",
      "ols": "olatdv",
      "prefixcommons": "OLATDV"
    },
    "obofoundry": {
      "contact": "bgee@sib.swiss",
      "contact.label": "bgee",
      "deprecated": false,
      "description": "Life cycle stages for Medaka",
      "download.obo": "http://purl.obolibrary.org/obo/olatdv.obo",
      "download.owl": "http://purl.obolibrary.org/obo/olatdv.owl",
      "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv",
      "license": "CC-BY",
      "name": "Medaka Developmental Stages",
      "preferredPrefix": "OlatDv",
      "prefix": "olatdv"
    },
    "ols": {
      "description": "Life cycle stages for Medaka",
      "download": "http://purl.obolibrary.org/obo/olatdv.owl",
      "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv",
      "name": "Medaka Developmental Stages",
      "prefix": "olatdv",
      "version": "2020-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/olatdv/releases/2020-03-10/olatdv.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OLATDV_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OLATDV"
    }
  },
  "om": {
    "bioportal": {
      "name": "Ontology of units of Measure",
      "prefix": "OM"
    },
    "mappings": {
      "bioportal": "OM",
      "ols": "om"
    },
    "name": "Ontology of units of Measure",
    "ols": {
      "contact": "hajo.rijgersberg@wur.nl",
      "description": "The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife.  OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM:  Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging",
      "download": "https://raw.githubusercontent.com/HajoRijgersberg/OM/master/om-2.0.rdf",
      "homepage": "https://github.com/HajoRijgersberg/OM",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology of units of Measure (OM)",
      "prefix": "om",
      "version": "2.0.31"
    }
  },
  "oma.grp": {
    "mappings": {
      "miriam": "oma.grp",
      "n2t": "oma.grp",
      "prefixcommons": "OMA.GRP"
    },
    "miriam": {
      "deprecated": false,
      "description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs.",
      "homepage": "https://omabrowser.org/cgi-bin/gateway.pl",
      "id": "00000343",
      "name": "OMA Group",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]+$",
      "prefix": "oma.grp",
      "provider_url": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1",
      "sampleId": "LCSCCPN"
    },
    "n2t": {
      "description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs.",
      "example": "LCSCCPN",
      "homepage": "https://omabrowser.org/cgi-bin/gateway.pl",
      "name": "OMA Group through OMA browser at ETH Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]+$",
      "prefix": "oma.grp",
      "provider_url": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/oma.grp/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "OMA.GRP"
    }
  },
  "oma.hog": {
    "banana": "HOG",
    "example": "0459895",
    "mappings": {
      "miriam": "oma.hog"
    },
    "miriam": {
      "deprecated": false,
      "description": "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. ",
      "homepage": "https://omabrowser.org",
      "id": "00000785",
      "name": "OMA HOGs",
      "namespaceEmbeddedInLui": true,
      "pattern": "^HOG:[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$",
      "prefix": "oma.hog",
      "provider_url": "https://omabrowser.org/oma/hog/resolve/HOG:$1/",
      "sampleId": "HOG:0459895"
    },
    "namespaceEmbeddedInLui": false,
    "pattern": "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$",
    "url": "https://omabrowser.org/oma/hog/HOG:$1"
  },
  "oma.protein": {
    "mappings": {
      "miriam": "oma.protein",
      "n2t": "oma.protein",
      "prefixcommons": "OMA.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.",
      "homepage": "https://omabrowser.org/cgi-bin/gateway.pl",
      "id": "00000342",
      "name": "OMA Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]{5}\\d+$",
      "prefix": "oma.protein",
      "provider_url": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1",
      "sampleId": "HUMAN16963"
    },
    "n2t": {
      "description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.",
      "example": "HUMAN16963",
      "homepage": "https://omabrowser.org/cgi-bin/gateway.pl",
      "name": "OMA Protein through OMA browser at ETH Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]{5}\\d+$",
      "prefix": "oma.protein",
      "provider_url": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/oma.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "OMA.PROTEIN"
    }
  },
  "omia": {
    "mappings": {
      "miriam": "omia",
      "n2t": "omia",
      "prefixcommons": "OMIA"
    },
    "miriam": {
      "deprecated": false,
      "description": "Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse).",
      "homepage": "http://omia.angis.org.au/",
      "id": "00000142",
      "name": "OMIA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "omia",
      "provider_url": "http://omia.angis.org.au/$1/",
      "sampleId": "1000"
    },
    "n2t": {
      "description": "Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse).",
      "example": "1000",
      "homepage": "http://omia.angis.org.au/",
      "name": "OMIA at University of Sydney",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "omia",
      "provider_url": "http://omia.angis.org.au/$1/"
    },
    "name": "Online Mendelian Inheritance in Animals",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OMIA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OMIA"
    }
  },
  "omiabis": {
    "bioportal": {
      "name": "Ontologized MIABIS",
      "prefix": "OMIABIS"
    },
    "mappings": {
      "bioportal": "OMIABIS",
      "obofoundry": "omiabis",
      "ols": "omiabis",
      "prefixcommons": "OMIABIS"
    },
    "obofoundry": {
      "contact": "mbrochhausen@gmail.com",
      "contact.label": "Mathias Brochhausen",
      "deprecated": false,
      "description": "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)",
      "download.owl": "http://purl.obolibrary.org/obo/omiabis.owl",
      "homepage": "https://github.com/OMIABIS/omiabis-dev",
      "license": "CC-BY",
      "name": "Ontologized MIABIS",
      "prefix": "omiabis"
    },
    "ols": {
      "description": "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)",
      "download": "http://purl.obolibrary.org/obo/omiabis.owl",
      "homepage": "https://github.com/OMIABIS/omiabis-dev",
      "name": "Ontologized MIABIS",
      "prefix": "omiabis",
      "version": "2014-05-28"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OMIABIS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OMIABIS"
    }
  },
  "omit": {
    "bioportal": {
      "name": "Ontology for MicroRNA Target",
      "prefix": "OMIT"
    },
    "download_obo": "https://raw.githubusercontent.com/OmniSearch/omit/master/src/ontology/omit.obo",
    "example": "0000069",
    "mappings": {
      "bioportal": "OMIT",
      "miriam": "omit",
      "n2t": "omit",
      "obofoundry": "omit",
      "ols": "omit",
      "prefixcommons": "OMIT"
    },
    "miriam": {
      "deprecated": false,
      "description": "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/omit/",
      "id": "00000605",
      "name": "OMIT",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{7}$",
      "prefix": "omit",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_$1",
      "sampleId": "0005506"
    },
    "n2t": {
      "description": "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).",
      "example": "0005506",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/omit/",
      "name": "Ontology for miRNA Target (OMIT) through OLS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{7}$",
      "prefix": "omit",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_$1"
    },
    "name": "Ontology for MicroRNA Target",
    "obofoundry": {
      "contact": "huang@southalabama.edu",
      "contact.label": "Huang, Jingshan",
      "deprecated": false,
      "description": "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain",
      "download.owl": "http://purl.obolibrary.org/obo/omit.owl",
      "homepage": "http://omit.cis.usouthal.edu/",
      "license": "CC-BY 3.0",
      "name": "Ontology for MIRNA Target",
      "prefix": "omit"
    },
    "ols": {
      "description": "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain",
      "download": "http://purl.obolibrary.org/obo/omit.owl",
      "homepage": "http://omit.cis.usouthal.edu/",
      "name": "Ontology for MIRNA Target",
      "prefix": "omit",
      "version": "2019-06-07",
      "version.iri": "http://purl.obolibrary.org/obo/omit/dev/omit.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OMIT_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OMIT"
    },
    "synonyms": [
      "OMIT"
    ],
    "wikidata": {
      "prefix": "Q55118529"
    }
  },
  "omo": {
    "bioportal": {
      "name": "OBO Metadata Ontology",
      "prefix": "OMO"
    },
    "mappings": {
      "bioportal": "OMO",
      "obofoundry": "omo",
      "ols": "omo"
    },
    "obofoundry": {
      "contact": "cjmungall@lbl.gov",
      "contact.label": "Chris Mungall",
      "deprecated": false,
      "description": "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).",
      "download.owl": "http://purl.obolibrary.org/obo/omo.owl",
      "homepage": "https://github.com/information-artifact-ontology/ontology-metadata",
      "license": "CC0",
      "name": "OBO Metadata Ontology",
      "prefix": "omo"
    },
    "ols": {
      "description": "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).",
      "download": "http://purl.obolibrary.org/obo/omo.owl",
      "homepage": "https://github.com/information-artifact-ontology/ontology-metadata",
      "name": "OBO Metadata Ontology",
      "prefix": "omo",
      "version": "2020-06-08",
      "version.iri": "http://purl.obolibrary.org/obo/omo/2020-06-08/omo.owl"
    }
  },
  "omop": {
    "homepage": "https://www.ohdsi.org/data-standardization/the-common-data-model/",
    "name": "Observational Medical Outcomes Partnership",
    "references": [
      "https://github.com/callahantiff/OMOP2OBO"
    ]
  },
  "omp": {
    "bioportal": {
      "name": "Ontology of Microbial Phenotypes",
      "prefix": "OMP"
    },
    "example": "0005067",
    "mappings": {
      "bioportal": "OMP",
      "obofoundry": "omp",
      "ols": "omp",
      "prefixcommons": "OMP"
    },
    "obofoundry": {
      "contact": "jimhu@tamu.edu",
      "contact.label": "James C. Hu",
      "deprecated": false,
      "description": "An ontology of phenotypes covering microbes",
      "download.obo": "http://purl.obolibrary.org/obo/omp.obo",
      "download.owl": "http://purl.obolibrary.org/obo/omp.owl",
      "homepage": "http://microbialphenotypes.org",
      "license": "CC-BY",
      "name": "Ontology of Microbial Phenotypes",
      "prefix": "omp"
    },
    "ols": {
      "description": "An ontology of phenotypes covering microbes",
      "download": "http://purl.obolibrary.org/obo/omp.owl",
      "homepage": "http://microbialphenotypes.org",
      "name": "Ontology of Microbial Phenotypes",
      "prefix": "omp",
      "version": "2021-07-02",
      "version.iri": "http://purl.obolibrary.org/obo/omp/releases/2021-07-02/omp.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OMP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OMP"
    },
    "wikidata": {
      "database": "Q81661753"
    }
  },
  "omrse": {
    "bioportal": {
      "name": "Ontology of Medically Related Social Entities",
      "prefix": "OMRSE"
    },
    "download_obo": "https://github.com/ufbmi/OMRSE/raw/master/omrse-full.obo",
    "mappings": {
      "bioportal": "OMRSE",
      "obofoundry": "omrse",
      "ols": "omrse",
      "prefixcommons": "OMRSE"
    },
    "obofoundry": {
      "contact": "hoganwr@gmail.com",
      "contact.label": "Bill Hogan",
      "deprecated": false,
      "description": "This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations.",
      "download.owl": "http://purl.obolibrary.org/obo/omrse.owl",
      "homepage": "https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview",
      "license": "CC-BY 4.0",
      "name": "Ontology of Medically Related Social Entities",
      "prefix": "omrse"
    },
    "ols": {
      "description": "This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations.",
      "download": "http://purl.obolibrary.org/obo/omrse.owl",
      "homepage": "https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology of Medically Related Social Entities",
      "prefix": "omrse",
      "version": "2020-10-27"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OMRSE_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OMRSE"
    }
  },
  "oncotree": {
    "appears_in": [
      "efo"
    ],
    "example": "BLL",
    "homepage": "http://oncotree.mskcc.org",
    "name": "OncoTree",
    "url": "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1"
  },
  "one": {
    "bioportal": {
      "name": "Ontology for Nutritional Epidemiology",
      "prefix": "ONE"
    },
    "mappings": {
      "bioportal": "ONE",
      "obofoundry": "one",
      "ols": "one"
    },
    "obofoundry": {
      "contact": "chen.yang@ugent.be",
      "contact.label": "Chen Yang",
      "deprecated": false,
      "description": "An ontology to standardize research output of nutritional epidemiologic studies.",
      "download.owl": "http://purl.obolibrary.org/obo/one.owl",
      "homepage": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies",
      "license": "CC-BY",
      "name": "Ontology for Nutritional Epidemiology",
      "prefix": "one"
    },
    "ols": {
      "description": "An ontology to standardize research output of nutritional epidemiologic studies.",
      "download": "http://purl.obolibrary.org/obo/one.owl",
      "homepage": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies",
      "name": "Ontology for Nutritional Epidemiology",
      "prefix": "one"
    }
  },
  "ons": {
    "bioportal": {
      "name": "Ontology for Nutritional Studies",
      "prefix": "ONS"
    },
    "mappings": {
      "bioportal": "ONS",
      "obofoundry": "ons",
      "ols": "ons"
    },
    "obofoundry": {
      "contact": "francesco.vitali@ibba.cnr.it",
      "contact.label": "Francesco Vitali",
      "deprecated": false,
      "description": "An ontology for description of concepts in the nutritional studies domain.",
      "download.owl": "http://purl.obolibrary.org/obo/ons.owl",
      "homepage": "https://github.com/enpadasi/Ontology-for-Nutritional-Studies",
      "license": "CC-BY",
      "name": "Ontology for Nutritional Studies",
      "prefix": "ons"
    },
    "ols": {
      "description": "The Ontology for Nutritional Studies (ONS) has been developed as part of the ENPADASI European project (http://www.enpadasi.eu/) with the aim to define a common language and building ontologies for nutritional studies.",
      "download": "http://purl.obolibrary.org/obo/ons.owl",
      "homepage": "https://github.com/enpadasi/Ontology-for-Nutritional-Studies",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology for Nutritional Studies",
      "prefix": "ons",
      "version": "June 2021 release"
    }
  },
  "ontoneo": {
    "bioportal": {
      "name": "Obstetric and Neonatal Ontology",
      "prefix": "ONTONEO"
    },
    "homepage": "http://ontoneo.com",
    "mappings": {
      "bioportal": "ONTONEO",
      "obofoundry": "ontoneo",
      "ols": "ontoneo",
      "prefixcommons": "ONTONEO"
    },
    "obofoundry": {
      "contact": "fernanda.farinelli@gmail.com",
      "contact.label": "Fernanda Farinelli",
      "deprecated": false,
      "description": "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.",
      "download.owl": "http://purl.obolibrary.org/obo/ontoneo.owl",
      "homepage": "ontoneo.com",
      "license": "CC-BY",
      "name": "Obstetric and Neonatal Ontology",
      "prefix": "ontoneo"
    },
    "ols": {
      "description": "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.",
      "download": "http://purl.obolibrary.org/obo/ontoneo.owl",
      "homepage": "https://ontoneo.com/",
      "name": "Obstetric and Neonatal Ontology",
      "prefix": "ontoneo",
      "version": "2017-03-04",
      "version.iri": "http://purl.obolibrary.org/obo/ontoneo/releases/2017-03-04/ontoneo.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ONTONEO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ONTONEO"
    }
  },
  "oostt": {
    "bioportal": {
      "name": "Ontology of Organizational Structures of Trauma centers and Trauma systems",
      "prefix": "OOSTT"
    },
    "mappings": {
      "bioportal": "OOSTT",
      "obofoundry": "oostt",
      "ols": "oostt",
      "prefixcommons": "OOSTT"
    },
    "obofoundry": {
      "contact": "mbrochhausen@gmail.com",
      "contact.label": "Mathias Brochhausen",
      "deprecated": false,
      "description": "An ontology built for representating the organizational components of trauma centers and trauma systems.",
      "download.owl": "http://purl.obolibrary.org/obo/oostt.owl",
      "homepage": "https://github.com/OOSTT/OOSTT",
      "license": "CC-BY",
      "name": "Ontology of Organizational Structures of Trauma centers and Trauma systems",
      "prefix": "oostt"
    },
    "ols": {
      "description": "An ontology built for representating the organizational components of trauma centers and trauma systems.",
      "download": "http://purl.obolibrary.org/obo/oostt.owl",
      "homepage": "https://github.com/OOSTT/OOSTT",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology of Organizational Structures of Trauma centers and Trauma Systems",
      "prefix": "oostt",
      "version": "2021-01-11",
      "version.iri": "http://purl.obolibrary.org/obo/oostt//2021-01-08/oostt.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OOSTT_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OOSTT"
    }
  },
  "opb": {
    "bioportal": {
      "name": "Ontology of Physics for Biology",
      "prefix": "OPB"
    },
    "mappings": {
      "bioportal": "OPB",
      "miriam": "opb",
      "n2t": "opb",
      "prefixcommons": "OPB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.",
      "homepage": "http://bioportal.bioontology.org/ontologies/OPB",
      "id": "00000129",
      "name": "Ontology of Physics for Biology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^OPB_\\d+$",
      "prefix": "opb",
      "provider_url": "http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23$1",
      "sampleId": "OPB_00573"
    },
    "n2t": {
      "description": "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.",
      "example": "OPB_00573",
      "homepage": "http://bioportal.bioontology.org/ontologies/OPB",
      "name": "Ontology of Physics for Biology through Bioportal",
      "namespaceEmbeddedInLui": false,
      "pattern": "^OPB_\\d+$",
      "prefix": "opb",
      "provider_url": "http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/opb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "OPB"
    }
  },
  "opl": {
    "bioportal": {
      "name": "Ontology for Parasite LifeCycle",
      "prefix": "OPL"
    },
    "mappings": {
      "bioportal": "OPL",
      "obofoundry": "opl",
      "ols": "opl",
      "prefixcommons": "OPL"
    },
    "obofoundry": {
      "contact": "preets79@gmail.com",
      "contact.label": "Priti Parikh",
      "deprecated": false,
      "description": "A reference ontology for parasite life cycle stages.",
      "download.owl": "http://purl.obolibrary.org/obo/opl.owl",
      "homepage": "https://github.com/OPL-ontology/OPL",
      "license": "CC-BY 4.0",
      "name": "Ontology for Parasite LifeCycle",
      "prefix": "opl"
    },
    "ols": {
      "description": "The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium.",
      "download": "http://purl.obolibrary.org/obo/opl.owl",
      "homepage": "https://github.com/OPL-ontology/OPL",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Ontology for Parasite Lifecycle",
      "prefix": "opl",
      "version": "2021-01-28",
      "version.iri": "http://purl.obolibrary.org/obo/opl/2021-01-28/opl.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OPL_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OPL"
    }
  },
  "opm": {
    "mappings": {
      "miriam": "opm",
      "n2t": "opm",
      "prefixcommons": "OPM"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.",
      "homepage": "http://opm.phar.umich.edu/",
      "id": "00000333",
      "name": "OPM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}$",
      "prefix": "opm",
      "provider_url": "http://opm.phar.umich.edu/protein.php?pdbid=$1",
      "sampleId": "1h68"
    },
    "n2t": {
      "description": "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.",
      "example": "1h68",
      "homepage": "http://opm.phar.umich.edu/",
      "name": "OPM at University of Michigan",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}$",
      "prefix": "opm",
      "provider_url": "http://opm.phar.umich.edu/protein.php?pdbid=$1"
    },
    "name": "Orientations of Proteins in Membranes Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/opm/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "OPM"
    }
  },
  "opmi": {
    "bioportal": {
      "name": "Ontology of Precision Medicine and Investigation",
      "prefix": "OPMI"
    },
    "mappings": {
      "bioportal": "OPMI",
      "obofoundry": "opmi",
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    },
    "obofoundry": {
      "contact": "yongqunh@med.umich.edu",
      "contact.label": "Yongqun Oliver He",
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      "download.owl": "http://purl.obolibrary.org/obo/opmi.owl",
      "homepage": "https://github.com/OPMI/opmi",
      "license": "CC-BY",
      "name": "Ontology of Precision Medicine and Investigation",
      "prefix": "opmi"
    },
    "ols": {
      "description": "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles.",
      "download": "http://purl.obolibrary.org/obo/opmi.owl",
      "homepage": "https://github.com/OPMI/opmi",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "OPMI: Ontology of Precision Medicine and Investigation",
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      "formatter": "https://orcid.org/$1",
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      "prefix": "ORCID"
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      "biolink": "ORCID",
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      "prefixcommons": "ORCID"
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      "deprecated": false,
      "description": "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.",
      "homepage": "https://orcid.org",
      "id": "00000382",
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      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$",
      "prefix": "orcid",
      "provider_url": "https://orcid.org/$1",
      "sampleId": "0000-0002-5355-2576"
    },
    "n2t": {
      "description": "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.",
      "example": "0000-0002-5355-2576",
      "homepage": "https://orcid.org",
      "name": "ORCID at Bethesda",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$",
      "prefix": "orcid",
      "provider_url": "https://orcid.org/$1"
    },
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      "formatter": "http://identifiers.org/orcid/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ORCID"
    },
    "synonyms": [
      "ORCiD",
      "ORCID"
    ],
    "wikidata": {
      "database": "Q51044",
      "database.label": "ORCID iD",
      "format": "https://orcid.org/$1",
      "homepage": "https://orcid.org/",
      "name": "ORCID iD",
      "pattern": "0000-000(1-[5-9]|2-[0-9]|3-[0-4])\\d{3}-\\d{3}[\\dX]",
      "prefix": "P496"
    }
  },
  "ordb": {
    "mappings": {
      "miriam": "ordb",
      "n2t": "ordb",
      "prefixcommons": "ORDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs).",
      "homepage": "http://senselab.med.yale.edu/OrDB/",
      "id": "00000499",
      "name": "Olfactory Receptor Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ordb",
      "provider_url": "http://senselab.med.yale.edu/ORDB/Data/$1",
      "sampleId": "8497"
    },
    "n2t": {
      "description": "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs).",
      "example": "8497",
      "homepage": "http://senselab.med.yale.edu/OrDB/",
      "name": "Olfactory Receptor Database at Yale University School of Medicine",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ordb",
      "provider_url": "http://senselab.med.yale.edu/ORDB/Data/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ordb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ORDB"
    }
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    "mappings": {
      "miriam": "oridb.sacch",
      "n2t": "oridb.sacch",
      "prefixcommons": "ORIDB.SACCH"
    },
    "miriam": {
      "deprecated": false,
      "description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae.",
      "homepage": "http://cerevisiae.oridb.org/index.php",
      "id": "00000369",
      "name": "OriDB Saccharomyces",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oridb.sacch",
      "provider_url": "http://cerevisiae.oridb.org/details.php?id=$1",
      "sampleId": "1"
    },
    "n2t": {
      "description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae.",
      "example": "1",
      "homepage": "http://cerevisiae.oridb.org/index.php",
      "name": "OriDB Saccharomyces at University of Nottingham",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oridb.sacch",
      "provider_url": "http://cerevisiae.oridb.org/details.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/oridb.sacch/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ORIDB.SACCH"
    }
  },
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    "mappings": {
      "miriam": "oridb.schizo",
      "n2t": "oridb.schizo",
      "prefixcommons": "ORIDB.SCHIZO"
    },
    "miriam": {
      "deprecated": false,
      "description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe.",
      "homepage": "http://pombe.oridb.org/index.php",
      "id": "00000368",
      "name": "OriDB Schizosaccharomyces",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oridb.schizo",
      "provider_url": "http://pombe.oridb.org/details.php?id=$1",
      "sampleId": "1"
    },
    "n2t": {
      "description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe.",
      "example": "1",
      "homepage": "http://pombe.oridb.org/index.php",
      "name": "OriDB Schizosaccharomyces at University of Nottingham",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oridb.schizo",
      "provider_url": "http://pombe.oridb.org/details.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/oridb.schizo/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ORIDB.SCHIZO"
    }
  },
  "ornaseq": {
    "bioportal": {
      "name": "Ontology of RNA Sequencing",
      "prefix": "ORNASEQ"
    },
    "mappings": {
      "bioportal": "ORNASEQ",
      "obofoundry": "ornaseq",
      "ols": "ornaseq"
    },
    "obofoundry": {
      "contact": "safisher@upenn.edu",
      "contact.label": "Stephen Fisher",
      "deprecated": false,
      "description": "An application ontology designed to annotate next-generation sequencing experiments performed on RNA.",
      "download.owl": "http://purl.obolibrary.org/obo/ornaseq.owl",
      "homepage": "http://kim.bio.upenn.edu/software/ornaseq.shtml",
      "license": "CC-BY",
      "name": "Ontology of RNA Sequencing",
      "prefix": "ornaseq"
    },
    "ols": {
      "description": "An application ontology designed to annotate next-generation sequencing experiments performed on RNA.",
      "download": "http://purl.obolibrary.org/obo/ornaseq.owl",
      "homepage": "http://kim.bio.upenn.edu/software/ornaseq.shtml",
      "name": "Ontology for RNA sequencing (ORNASEQ)",
      "prefix": "ornaseq",
      "version": "2019-07-08",
      "version.iri": "http://purl.obolibrary.org/obo/ornaseq/2019-07-08/ornaseq.owl"
    }
  },
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    "mappings": {
      "miriam": "orphanet",
      "n2t": "orphanet",
      "prefixcommons": "Orphanet",
      "uniprot": "Orphanet",
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      "wikidata": "P1550"
    },
    "miriam": {
      "deprecated": false,
      "description": "Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases.",
      "homepage": "http://www.orpha.net/consor/",
      "id": "00000220",
      "name": "Orphanet",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
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      "provider_url": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1",
      "sampleId": "85163"
    },
    "n2t": {
      "description": "Orphanet is a reference portal for information on rare diseases and orphan drugs. It&#x2019;s aim is to help improve the diagnosis, care and treatment of patients with rare diseases.",
      "example": "85163",
      "homepage": "http://www.orpha.net/consor/",
      "name": "Orphanet at Inserm",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "orphanet",
      "provider_url": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1"
    },
    "name": "Orphanet",
    "prefixcommons": {
      "formatter": "http://www.orpha.net/ORDO/Orphanet_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "Orphanet"
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    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=%s",
      "identifier": "68",
      "link_is_explicit": "true",
      "name": "Orphanet; a database dedicated to information on rare diseases and orphan drugs",
      "prefix": "Orphanet"
    },
    "wikidata": {
      "database": "Q1515833",
      "database.homepage": "https://www.orpha.net",
      "database.label": "Orphanet",
      "format": "https://www.orpha.net/consor/cgi-bin//OC_Exp.php?lng=EN&Expert=$1",
      "homepage": "https://www.orpha.net",
      "name": "Orphanet ID",
      "pattern": "[1-9]\\d{0,5}",
      "prefix": "P1550"
    }
  },
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    "biolink": {
      "formatter": "http://www.orpha.net/ORDO/Orphanet_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "ORPHA"
    },
    "bioportal": {
      "name": "Orphanet Rare Disease Ontology",
      "prefix": "ORDO"
    },
    "cellosaurus": {
      "category": "Ontologies",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/ordo",
      "name": "Orphanet Rare Disease Ontology",
      "prefix": "ORDO",
      "url": "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?iri=http://www.orpha.net/ORDO/$1"
    },
    "mappings": {
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      "bioportal": "ORDO",
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      "miriam": "orphanet.ordo",
      "n2t": "orphanet.ordo",
      "ols": "ordo",
      "prefixcommons": "ORPHANET.ORDO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/ordo",
      "id": "00000532",
      "name": "Orphanet Rare Disease Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Orphanet(_|:)C?\\d+$",
      "prefix": "orphanet.ordo",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=$1",
      "sampleId": "Orphanet_C023"
    },
    "n2t": {
      "description": "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).",
      "example": "Orphanet_C023",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/ordo",
      "name": "ORDO via OLS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Orphanet(_|:)C?\\d+$",
      "prefix": "orphanet.ordo",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=$1"
    },
    "ols": {
      "description": "The Orphanet Rare Disease ontology (ORDO) is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It derived from the Orphanet database (www.orpha.net ) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10).",
      "download": "http://www.orphadata.org/data/ORDO/ordo_orphanet.owl",
      "license": "https://creativecommons.org/licenses/by/4.0/",
      "name": "Orphanet Rare Disease Ontology",
      "prefix": "ordo",
      "version": "3.2",
      "version.iri": "http://www.orpha.net/version3.2"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/orphanet.ordo/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ORPHANET.ORDO"
    },
    "synonyms": [
      "ordo"
    ]
  },
  "orth": {
    "bioportal": {
      "name": "Orthology Ontology",
      "prefix": "ORTH"
    },
    "mappings": {
      "bioportal": "ORTH",
      "ols": "orth"
    },
    "ols": {
      "description": "The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way.",
      "download": "http://purl.org/net/orth",
      "homepage": "http://purl.org/net/orth",
      "name": "Orthology Ontology",
      "prefix": "orth",
      "version": "This ontology is the second version of the orthology ontology first published in 2015 and available at http://purl.bioontology.org/ontology/ORTH .\n@authors T.M. de Farias, H. Chiba, J.T. Fernandez-Breis, E. Antezana, D. Kuznetsov, C. Dessimoz and F. Villiers.",
      "version.iri": "http://purl.org/net/orth/2.0"
    }
  },
  "orthodb": {
    "mappings": {
      "miriam": "orthodb",
      "n2t": "orthodb",
      "prefixcommons": "ORTHODB",
      "uniprot": "OrthoDB",
      "uniprot.database": "OrthoDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups",
      "homepage": "http://cegg.unige.ch/orthodb4",
      "id": "00000221",
      "name": "OrthoDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "orthodb",
      "provider_url": "http://cegg.unige.ch/orthodb/results?searchtext=$1",
      "sampleId": "Q9P0K8"
    },
    "n2t": {
      "description": "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups",
      "example": "Q9P0K8",
      "homepage": "http://cegg.unige.ch/orthodb4",
      "name": "OrthoDB at Swiss Institute of Bioinformatics",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "orthodb",
      "provider_url": "http://cegg.unige.ch/orthodb/results?searchtext=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/orthodb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ORTHODB"
    },
    "uniprot": {
      "category": "Phylogenomic databases",
      "formatter": "https://www.orthodb.org/?query=%u",
      "identifier": "143",
      "link_is_explicit": "true",
      "name": "Database of Orthologous Groups",
      "prefix": "OrthoDB"
    }
  },
  "oryzabase.gene": {
    "mappings": {
      "miriam": "oryzabase.gene",
      "n2t": "oryzabase.gene",
      "prefixcommons": "ORYZABASE.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.",
      "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
      "id": "00000482",
      "name": "Oryzabase Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oryzabase.gene",
      "provider_url": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1",
      "sampleId": "117"
    },
    "n2t": {
      "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.",
      "example": "117",
      "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
      "name": "Oryzabase v4 Gene at National Institute of Genetics (Japan)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oryzabase.gene",
      "provider_url": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/oryzabase.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ORYZABASE.GENE"
    }
  },
  "oryzabase.mutant": {
    "mappings": {
      "miriam": "oryzabase.mutant",
      "n2t": "oryzabase.mutant",
      "prefixcommons": "ORYZABASE.MUTANT"
    },
    "miriam": {
      "deprecated": false,
      "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.",
      "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
      "id": "00000483",
      "name": "Oryzabase Mutant",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oryzabase.mutant",
      "provider_url": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1",
      "sampleId": "21393"
    },
    "n2t": {
      "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.",
      "example": "21393",
      "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
      "name": "Oryzabase v4 Mutant at National Institute of Genetics (Japan)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oryzabase.mutant",
      "provider_url": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/oryzabase.mutant/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ORYZABASE.MUTANT"
    }
  },
  "oryzabase.reference": {
    "mappings": {
      "miriam": "oryzabase.reference",
      "n2t": "oryzabase.reference"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan.",
      "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
      "id": "00000689",
      "name": "Oryzabase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oryzabase.reference",
      "provider_url": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1",
      "sampleId": "42840"
    },
    "n2t": {
      "description": "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan.",
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      "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
      "name": "Oryzabase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "oryzabase.reference",
      "provider_url": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1"
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    "name": "Oryzabase Reference"
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      "deprecated": false,
      "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information.",
      "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
      "id": "00000485",
      "name": "Oryzabase Stage",
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      "provider_url": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1",
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      "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information.",
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      "homepage": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
      "name": "Oryzabase v4 Stage at National Institute of Genetics (Japan)",
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      "id": "00000484",
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      "provider_url": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1",
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      "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information.",
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      "name": "Oryzabase v4 Strain at National Institute of Genetics (Japan)",
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      "homepage": "http://oryzatagline.cirad.fr/",
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      "provider_url": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1",
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      "description": "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information.",
      "example": "AADB12",
      "homepage": "http://oryzatagline.cirad.fr/",
      "name": "Oryza Tag Line at CIRAD-INRA-SUPAGRO-UMI",
      "namespaceEmbeddedInLui": false,
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      "description": "A biomedical ontology in the domain of vaccine adverse events.",
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      "homepage": "http://www.violinet.org/ovae/",
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      "prefix": "ovae"
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    "ols": {
      "description": "OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). ",
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      "homepage": "http://www.violinet.org/ovae/",
      "name": "OVAE: Ontology of Vaccine Adverse Events",
      "prefix": "ovae",
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      "is_obo": true,
      "prefix": "OVAE"
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  "owl": {
    "mappings": {
      "prefixcommons": "owl"
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    "name": "OWL Ontology",
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      "formatter": "http://www.w3.org/2002/07/owl#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "owl"
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    "url": "http://www.w3.org/2002/07/owl#$1"
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      "prefixcommons": "P3DB.PROTEIN"
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      "deprecated": false,
      "description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites.",
      "homepage": "http://www.p3db.org/",
      "id": "00000501",
      "name": "P3DB Protein",
      "namespaceEmbeddedInLui": false,
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      "prefix": "p3db.protein",
      "provider_url": "http://www.p3db.org/protein.php?id=$1&amp;ref=0",
      "sampleId": "70"
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    "n2t": {
      "description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites.",
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      "homepage": "http://www.p3db.org/",
      "name": "P3DB Protein at University of Missouri",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
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      "provider_url": "http://www.p3db.org/protein.php?id=$1&amp;ref=0"
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      "formatter": "http://identifiers.org/p3db.protein/$1",
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      "is_obo": false,
      "prefix": "P3DB.PROTEIN"
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    "mappings": {
      "miriam": "p3db.site",
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      "prefixcommons": "P3DB.SITE"
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    "miriam": {
      "deprecated": false,
      "description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins.",
      "homepage": "http://www.p3db.org/",
      "id": "00000502",
      "name": "P3DB Site",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "p3db.site",
      "provider_url": "http://www.p3db.org/phosphosite.php?id=$1&ref=0",
      "sampleId": "65"
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    "n2t": {
      "description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins.",
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      "homepage": "http://www.p3db.org/",
      "name": "P3DB Site at University of Missouri",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "p3db.site",
      "provider_url": "http://www.p3db.org/phosphosite.php?id=$1&ref=0"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/p3db.site/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "P3DB.SITE"
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  },
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    "mappings": {
      "miriam": "paleodb",
      "n2t": "paleodb",
      "prefixcommons": "PALEODB"
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    "miriam": {
      "deprecated": false,
      "description": "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data.",
      "homepage": "http://paleodb.org/",
      "id": "00000197",
      "name": "PaleoDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "paleodb",
      "provider_url": "http://fossilworks.org/?a=taxonInfo&taxon_no=$1",
      "sampleId": "83088"
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    "n2t": {
      "description": "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data.",
      "example": "83088",
      "homepage": "http://paleodb.org/",
      "name": "PaleoDB at Macquarie University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "paleodb",
      "provider_url": "http://fossilworks.org/?a=taxonInfo&taxon_no=$1"
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    "name": "Paleobiology Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/paleodb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PALEODB"
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  },
  "panorama": {
    "description": "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible.",
    "example": "FxnI151FMs",
    "homepage": "https://panoramaweb.org",
    "mappings": {
      "fairsharing": "FAIRsharing.uBpQ1q"
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    "name": "Panorama Public",
    "url": "https://panoramaweb.org/$1.url"
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    "go": {
      "formatter": "http://www.pantherdb.org/panther/lookupId.jsp?id=$1",
      "homepage": "http://www.pantherdb.org/",
      "name": "Protein ANalysis THrough Evolutionary Relationships Classification System",
      "prefix": "PANTHER"
    },
    "mappings": {
      "go": "PANTHER",
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      "n2t": "panther.family",
      "prefixcommons": "PANTHER.FAMILY"
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    "miriam": {
      "deprecated": false,
      "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families.",
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      "id": "00000060",
      "name": "PANTHER Family",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PTHR\\d{5}(\\:SF\\d{1,3})?$",
      "prefix": "panther.family",
      "provider_url": "http://www.pantherdb.org/panther/family.do?clsAccession=$1",
      "sampleId": "PTHR12345"
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    "n2t": {
      "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families.",
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      "name": "PANTHER Family at USC (Los Angeles)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PTHR\\d{5}(\\:SF\\d{1,3})?$",
      "prefix": "panther.family",
      "provider_url": "http://www.pantherdb.org/panther/family.do?clsAccession=$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/panther.family/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PANTHER.FAMILY"
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    "mappings": {
      "miriam": "panther.node",
      "n2t": "panther.node",
      "prefixcommons": "PANTHER.NODE"
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    "miriam": {
      "deprecated": false,
      "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes.",
      "homepage": "http://pantree.org/",
      "id": "00000374",
      "name": "PANTHER Node",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PTN\\d{9}$",
      "prefix": "panther.node",
      "provider_url": "http://www.pantree.org/node/annotationNode.jsp?id=$1",
      "sampleId": "PTN000000026"
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    "n2t": {
      "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent &#x2018;all&#x2019; of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes.",
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      "name": "PANTHER Node at USC (Los Angeles)",
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      "is_obo": false,
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  "panther.pathway": {
    "mappings": {
      "miriam": "panther.pathway",
      "n2t": "panther.pathway",
      "prefixcommons": "PANTHER.PATHWAY"
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    "miriam": {
      "deprecated": false,
      "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components.",
      "homepage": "http://www.pantherdb.org/",
      "id": "00000363",
      "name": "PANTHER Pathway",
      "namespaceEmbeddedInLui": false,
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      "prefix": "panther.pathway",
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      "sampleId": "P00024"
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    "n2t": {
      "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components.",
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      "homepage": "http://www.pantherdb.org/",
      "name": "PANTHER Pathway at USC (Los Angeles)",
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      "deprecated": false,
      "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation.",
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      "id": "00000422",
      "name": "PANTHER Pathway Component",
      "namespaceEmbeddedInLui": false,
      "pattern": "^G|P|U|C|S\\d{5}$",
      "prefix": "panther.pthcmp",
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      "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway components may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation.",
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      "homepage": "http://www.pantherdb.org/",
      "name": "PANTHER Pathway Component at USC (Los Angeles)",
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      "prefix": "panther.pthcmp",
      "provider_url": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1"
    },
    "prefixcommons": {
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      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PANTHER.PTHCMP"
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    "mappings": {
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    "obofoundry": {
      "contact": "jaiswalp@science.oregonstate.edu",
      "contact.label": "Pankaj Jaiswal",
      "deprecated": true,
      "homepage": "http://www.plantontology.org",
      "name": "Plant Anatomy Ontology",
      "prefix": "pao"
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    "prefixcommons": {
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    "miriam": {
      "deprecated": false,
      "description": "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.",
      "homepage": "http://caps.ncbs.res.in/pass2/",
      "id": "00000468",
      "name": "PASS2",
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      "provider_url": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$1",
      "sampleId": "46977"
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      "description": "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.",
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      "name": "PASS2 at National centre for Biological Sciences (India)",
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      "prefix": "PASS2"
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    "url": "https://pathbank.org/view/$1"
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    "miriam": {
      "deprecated": false,
      "description": "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.",
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      "name": "Pathway Commons",
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      "pattern": "^\\d+$",
      "prefix": "pathwaycommons",
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      "sampleId": "485991"
    },
    "n2t": {
      "description": "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.",
      "example": "485991",
      "homepage": "http://www.pathwaycommons.org/pc/",
      "name": "Pathway Commons",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pathwaycommons",
      "provider_url": "http://www.pathwaycommons.org/pc/record2.do?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pathwaycommons/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PATHWAYCOMMONS"
    },
    "uniprot": {
      "category": "Enzyme and pathway databases",
      "formatter": "http://apps.pathwaycommons.org/search?q=%u",
      "identifier": "253",
      "link_is_explicit": "true",
      "name": "Pathway Commons web resource for biological pathway data",
      "prefix": "PathwayCommons"
    }
  },
  "pato": {
    "bioportal": {
      "name": "Phenotypic Quality Ontology",
      "prefix": "PATO"
    },
    "go": {
      "homepage": "http://www.obofoundry.org/ontology/pato.html",
      "name": "Phenotypic quality ontology",
      "prefix": "PATO"
    },
    "mappings": {
      "bioportal": "PATO",
      "go": "PATO",
      "miriam": "pato",
      "n2t": "pato",
      "obofoundry": "pato",
      "ols": "pato",
      "prefixcommons": "PATO"
    },
    "miriam": {
      "deprecated": false,
      "description": "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype  annotation.",
      "homepage": "http://bioportal.bioontology.org/ontologies/PATO",
      "id": "00000112",
      "name": "PATO",
      "namespaceEmbeddedInLui": true,
      "pattern": "^PATO:\\d{7}$",
      "prefix": "pato",
      "provider_url": "http://purl.bioontology.org/ontology/PATO/PATO:$1",
      "sampleId": "0001998"
    },
    "n2t": {
      "description": "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype  annotation.",
      "example": "0001998",
      "homepage": "http://bioportal.bioontology.org/ontologies/PATO",
      "name": "PATO through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^PATO:\\d{7}$",
      "prefix": "pato",
      "provider_url": "http://purl.bioontology.org/ontology/PATO/PATO:$1"
    },
    "obofoundry": {
      "contact": "g.gkoutos@gmail.com",
      "contact.label": "George Gkoutos",
      "deprecated": false,
      "description": "An ontology of phenotypic qualities (properties, attributes or characteristics)",
      "download.json": "http://purl.obolibrary.org/obo/pato.json",
      "download.obo": "http://purl.obolibrary.org/obo/pato.obo",
      "download.owl": "http://purl.obolibrary.org/obo/pato.owl",
      "homepage": "https://github.com/pato-ontology/pato/",
      "license": "CC-BY",
      "name": "Phenotype And Trait Ontology",
      "prefix": "pato"
    },
    "ols": {
      "description": "An ontology of phenotypic qualities (properties, attributes or characteristics).",
      "download": "http://purl.obolibrary.org/obo/pato.owl",
      "homepage": "https://github.com/pato-ontology/pato/",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "PATO - the Phenotype And Trait Ontology",
      "prefix": "pato",
      "version": "2021-07-09",
      "version.iri": "http://purl.obolibrary.org/obo/pato/releases/2021-07-09/pato.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PATO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PATO"
    }
  },
  "paxdb.organism": {
    "mappings": {
      "miriam": "paxdb.organism",
      "n2t": "paxdb.organism",
      "prefixcommons": "PAXDB.ORGANISM"
    },
    "miriam": {
      "deprecated": false,
      "description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.",
      "homepage": "http://pax-db.org/",
      "id": "00000488",
      "name": "PaxDb Organism",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "paxdb.organism",
      "provider_url": "http://pax-db.org/#!species/$1",
      "sampleId": "9606"
    },
    "n2t": {
      "description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.",
      "example": "9606",
      "homepage": "http://pax-db.org/",
      "name": "PaxDb v3 at University of Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "paxdb.organism",
      "provider_url": "http://pax-db.org/#!species/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/paxdb.organism/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PAXDB.ORGANISM"
    }
  },
  "paxdb.protein": {
    "mappings": {
      "miriam": "paxdb.protein",
      "n2t": "paxdb.protein",
      "prefixcommons": "PAXDB.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.",
      "homepage": "http://pax-db.org/",
      "id": "00000489",
      "name": "PaxDb Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "paxdb.protein",
      "provider_url": "http://pax-db.org/#!protein/$1",
      "sampleId": "977869"
    },
    "n2t": {
      "description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.",
      "example": "977869",
      "homepage": "http://pax-db.org/",
      "name": "PaxDb v3 at University of Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "paxdb.protein",
      "provider_url": "http://pax-db.org/#!protein/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/paxdb.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PAXDB.PROTEIN"
    }
  },
  "pazar": {
    "mappings": {
      "miriam": "pazar",
      "n2t": "pazar",
      "prefixcommons": "PAZAR"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors.",
      "homepage": "http://www.pazar.info/",
      "id": "00000306",
      "name": "Pazar Transcription Factor",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TF\\w+$",
      "prefix": "pazar",
      "provider_url": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1",
      "sampleId": "TF0001053"
    },
    "n2t": {
      "description": "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors.",
      "example": "TF0001053",
      "homepage": "http://www.pazar.info/",
      "name": "Pazar Transcription Factor at University of British Columbia",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TF\\w+$",
      "prefix": "pazar",
      "provider_url": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pazar/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PAZAR"
    }
  },
  "pco": {
    "bioportal": {
      "name": "Population and Community Ontology",
      "prefix": "PCO"
    },
    "example": "0000021",
    "mappings": {
      "bioportal": "PCO",
      "obofoundry": "pco",
      "ols": "pco",
      "prefixcommons": "PCO"
    },
    "obofoundry": {
      "contact": "rlwalls2008@gmail.com",
      "contact.label": "Ramona Walls",
      "deprecated": false,
      "description": "An ontology about groups of interacting organisms such as populations and communities",
      "download.owl": "http://purl.obolibrary.org/obo/pco.owl",
      "homepage": "https://github.com/PopulationAndCommunityOntology/pco",
      "license": "CC-0",
      "name": "Population and Community Ontology",
      "prefix": "pco"
    },
    "ols": {
      "description": "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology.",
      "download": "http://purl.obolibrary.org/obo/pco.owl",
      "homepage": "https://github.com/PopulationAndCommunityOntology/pco",
      "license": "http://creativecommons.org/publicdomain/zero/1.0/",
      "name": "Population and Community Ontology",
      "prefix": "pco",
      "version": "2021-05-03",
      "version.iri": "http://purl.obolibrary.org/obo/pco/releases/2021-05-03/pco.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PCO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PCO"
    }
  },
  "pd_st": {
    "mappings": {
      "obofoundry": "pd_st",
      "prefixcommons": "PD_ST"
    },
    "obofoundry": {
      "contact": "henrich@embl.de",
      "contact.label": "Thorsten Heinrich",
      "deprecated": true,
      "homepage": "http://4dx.embl.de/platy",
      "name": "Platynereis stage ontology",
      "prefix": "pd_st"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PD_ST_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PD_ST"
    }
  },
  "pdb": {
    "go": {
      "formatter": "https://www.rcsb.org/structure/$1",
      "homepage": "https://www.rcsb.org/pdb/",
      "name": "Protein Data Bank",
      "prefix": "PDB"
    },
    "mappings": {
      "fairsharing": "FAIRsharing.2t35ja",
      "go": "PDB",
      "miriam": "pdb",
      "n2t": "pdb",
      "ncbi": "PDB",
      "prefixcommons": "PDB",
      "uniprot": "PDB",
      "uniprot.database": "PDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.",
      "homepage": "https://www.pdb.org/",
      "id": "00000020",
      "name": "Protein Data Bank",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}$",
      "prefix": "pdb",
      "provider_url": "https://www.rcsb.org/structure/$1",
      "sampleId": "2gc4"
    },
    "n2t": {
      "description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.",
      "example": "2gc4",
      "homepage": "https://www.pdb.org/",
      "name": "RCSB PDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}$",
      "prefix": "pdb",
      "provider_url": "https://www.rcsb.org/pdb/explore/explore.do?structureId=$1"
    },
    "ncbi": {
      "example": "12GS",
      "homepage": "http://www.rcsb.org/pdb/",
      "name": "Biological macromolecule three dimensional structure database",
      "prefix": "PDB"
    },
    "prefixcommons": {
      "formatter": "http://www.ebi.ac.uk/pdbsum/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "PDB"
    },
    "synonyms": [
      "wwpdb"
    ],
    "uniprot": {
      "category": "3D structure databases",
      "formatter": "https://www.ebi.ac.uk/pdbe-srv/view/entry/%s",
      "identifier": "70",
      "link_is_explicit": "true",
      "name": "Protein Data Bank Europe",
      "prefix": "PDB"
    },
    "wikidata": {
      "database": "Q766195",
      "database.label": "Protein Data Bank",
      "format": "https://rdf.wwpdb.org/pdb/$1",
      "homepage": "https://www.rcsb.org/",
      "name": "PDB structure ID",
      "pattern": "[0-9][0-9A-Za-z]{3}",
      "prefix": "P638"
    }
  },
  "pdb-ccd": {
    "mappings": {
      "miriam": "pdb-ccd",
      "n2t": "pdb-ccd",
      "prefixcommons": "PDB-CCD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.",
      "homepage": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/",
      "id": "00000113",
      "name": "Chemical Component Dictionary",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{3}$",
      "prefix": "pdb-ccd",
      "provider_url": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1",
      "sampleId": "AB0"
    },
    "n2t": {
      "description": "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.",
      "example": "AB0",
      "homepage": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/",
      "name": "Protein Data Bank Chemical Component Dictionary at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{3}$",
      "prefix": "pdb-ccd",
      "provider_url": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pdb-ccd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PDB-CCD"
    },
    "synonyms": [
      "pdbechem"
    ],
    "url": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"
  },
  "pdb.ligand": {
    "mappings": {
      "miriam": "pdb.ligand",
      "n2t": "pdb.ligand",
      "prefixcommons": "PDB.LIGAND"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.",
      "homepage": "https://www.pdbe.org/",
      "id": "00000490",
      "name": "Protein Data Bank Ligand",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "pdb.ligand",
      "provider_url": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1",
      "sampleId": "TRQ"
    },
    "n2t": {
      "description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.",
      "example": "TRQ",
      "homepage": "http://www.pdb.org/",
      "name": "PDB Ligand at RCSB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "pdb.ligand",
      "provider_url": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pdb.ligand/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PDB.LIGAND"
    },
    "synonyms": [
      "PDB_CHEM_ID"
    ],
    "wikidata": {
      "prefix": "P3636"
    }
  },
  "pdbe": {
    "name": "Protein Data Bank in Europe"
  },
  "pdro": {
    "bioportal": {
      "name": "The Prescription of Drugs Ontology",
      "prefix": "PDRO"
    },
    "mappings": {
      "bioportal": "PDRO",
      "obofoundry": "pdro",
      "ols": "pdro",
      "prefixcommons": "PDRO"
    },
    "obofoundry": {
      "contact": "paul.fabry@usherbrooke.ca",
      "contact.label": "Paul Fabry",
      "deprecated": false,
      "description": "An ontology to describe entities related to prescription of drugs",
      "download.owl": "http://purl.obolibrary.org/obo/pdro.owl",
      "homepage": "https://github.com/OpenLHS/PDRO",
      "license": "CC BY 4.0",
      "name": "The Prescription of Drugs Ontology",
      "prefix": "pdro"
    },
    "ols": {
      "description": "An ontology to describe entities related to prescription of drugs",
      "download": "http://purl.obolibrary.org/obo/pdro.owl",
      "homepage": "https://github.com/OpenLHS/PDRO",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "The Prescription of Drugs Ontology",
      "prefix": "pdro",
      "version": "2021-06-08",
      "version.iri": "http://purl.obolibrary.org/obo/pdro/2021-06-08/pdro.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PDRO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PDRO"
    }
  },
  "pdumdv": {
    "bioportal": {
      "name": "Platynereis Developmental Stages",
      "prefix": "PDUMDV"
    },
    "example": "0001410",
    "mappings": {
      "bioportal": "PDUMDV",
      "obofoundry": "pdumdv",
      "ols": "pdumdv",
      "prefixcommons": "PDUMDV"
    },
    "obofoundry": {
      "contact": "bgee@sib.swiss",
      "contact.label": "bgee",
      "deprecated": false,
      "description": "Life cycle stages for Platynereis dumerilii",
      "download.obo": "http://purl.obolibrary.org/obo/pdumdv.obo",
      "download.owl": "http://purl.obolibrary.org/obo/pdumdv.owl",
      "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv",
      "license": "CC-BY",
      "name": "Platynereis Developmental Stages",
      "preferredPrefix": "PdumDv",
      "prefix": "pdumdv"
    },
    "ols": {
      "description": "Life cycle stages for Platynereis dumerilii",
      "download": "http://purl.obolibrary.org/obo/pdumdv.owl",
      "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv",
      "name": "Platynereis Developmental Stages",
      "prefix": "pdumdv",
      "version": "2020-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/pdumdv/releases/2020-03-10/pdumdv.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PDUMDV_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PDUMDV"
    },
    "synonyms": [
      "PdumDv"
    ]
  },
  "peco": {
    "banana": "EO",
    "bioportal": {
      "name": "Plant Experimental Conditions Ontology",
      "prefix": "PECO"
    },
    "download_obo": "https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo",
    "example": "0007114",
    "mappings": {
      "bioportal": "PECO",
      "miriam": "eo",
      "n2t": "eo",
      "obofoundry": "eo",
      "ols": "peco",
      "prefixcommons": "PECO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/eo",
      "id": "00000518",
      "name": "Plant Environment Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^(P)?EO\\:\\d{7}$",
      "prefix": "eo",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/eo/terms?obo_id=EO:$1",
      "sampleId": "0007404"
    },
    "n2t": {
      "description": "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.",
      "example": "0007404",
      "homepage": "http://bioportal.bioontology.org/ontologies/PECO",
      "name": "Plant Environment Ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^(P)?EO\\:\\d{7}$",
      "prefix": "eo",
      "provider_url": "http://purl.bioontology.org/ontology/PECO/EO:$1"
    },
    "obofoundry": {
      "contact": "jaiswalp@science.oregonstate.edu",
      "contact.label": "Pankaj Jaiswal",
      "deprecated": true,
      "description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.",
      "download.obo": "http://purl.obolibrary.org/obo/eo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/eo.owl",
      "homepage": "http://planteome.org/",
      "license": "CC-BY 4.0",
      "name": "Plant Environment Ontology",
      "prefix": "eo"
    },
    "ols": {
      "description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.",
      "download": "http://purl.obolibrary.org/obo/peco.owl",
      "homepage": "http://planteome.org/",
      "name": "Plant Experimental Conditions Ontology",
      "prefix": "peco",
      "version": "2020-08-21",
      "version.iri": "http://purl.obolibrary.org/obo/peco/releases/2020-08-21/peco.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PECO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PECO"
    },
    "synonyms": [
      "eo"
    ]
  },
  "ped": {
    "mappings": {
      "miriam": "ped"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.",
      "homepage": "https://proteinensemble.org/",
      "id": "00000777",
      "name": "Protein Ensemble Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PED\\d{5}$",
      "prefix": "ped",
      "provider_url": "https://proteinensemble.org/$1",
      "sampleId": "PED00037"
    }
  },
  "ped.ensemble": {
    "mappings": {
      "miriam": "ped.ensemble"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.",
      "homepage": "https://proteinensemble.org/",
      "id": "00000795",
      "name": "Protein Ensemble Database ensemble",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PED\\d{5}e\\d{3}$",
      "prefix": "ped.ensemble",
      "provider_url": "https://proteinensemble.org/$1",
      "sampleId": "PED00017e001"
    }
  },
  "peff": {
    "deprecated": true,
    "download_obo": "https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo",
    "example": "0001011",
    "homepage": "https://www.psidev.info/peff",
    "name": "PSI Extended File Format"
  },
  "peptideatlas": {
    "mappings": {
      "miriam": "peptideatlas",
      "n2t": "peptideatlas",
      "prefixcommons": "PEPTIDEATLAS",
      "uniprot": "PeptideAtlas",
      "uniprot.database": "PeptideAtlas"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.",
      "homepage": "http://www.peptideatlas.org/",
      "id": "00000053",
      "name": "PeptideAtlas",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PAp[0-9]{8}$",
      "prefix": "peptideatlas",
      "provider_url": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1",
      "sampleId": "PAp00000009"
    },
    "n2t": {
      "description": "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.",
      "example": "PAp00000009",
      "homepage": "http://www.peptideatlas.org/",
      "name": "PeptideAtlas at ISB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PAp[0-9]{8}$",
      "prefix": "peptideatlas",
      "provider_url": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/peptideatlas/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PEPTIDEATLAS"
    },
    "uniprot": {
      "category": "Proteomic databases",
      "formatter": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Search?action=GO&search_key=%s",
      "identifier": "71",
      "link_is_explicit": "true",
      "name": "PeptideAtlas",
      "prefix": "PeptideAtlas"
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  "peptideatlas.dataset": {
    "mappings": {
      "miriam": "peptideatlas.dataset",
      "n2t": "peptideatlas.dataset"
    },
    "miriam": {
      "deprecated": false,
      "description": "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas.",
      "homepage": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary",
      "id": "00000690",
      "name": "PeptideAtlas Dataset",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PASS\\d{5}$",
      "prefix": "peptideatlas.dataset",
      "provider_url": "http://www.peptideatlas.org/PASS/$1",
      "sampleId": "PASS01237"
    },
    "n2t": {
      "description": "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas.",
      "example": "PASS01237",
      "homepage": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary",
      "name": "PeptideAtlas Dataset",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PASS\\d{5}$",
      "prefix": "peptideatlas.dataset",
      "provider_url": "http://www.peptideatlas.org/PASS/$1"
    }
  },
  "peroxibase": {
    "mappings": {
      "miriam": "peroxibase",
      "n2t": "peroxibase",
      "prefixcommons": "PEROXIBASE",
      "uniprot": "PeroxiBase",
      "uniprot.database": "PeroxiBase"
    },
    "miriam": {
      "deprecated": false,
      "description": "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.",
      "homepage": "http://peroxibase.toulouse.inra.fr/",
      "id": "00000222",
      "name": "Peroxibase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "peroxibase",
      "provider_url": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1",
      "sampleId": "5282"
    },
    "n2t": {
      "description": "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.",
      "example": "5282",
      "homepage": "http://peroxibase.toulouse.inra.fr/",
      "name": "Peroxibase at University of Geneva",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "peroxibase",
      "provider_url": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/peroxibase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PEROXIBASE"
    },
    "uniprot": {
      "category": "Protein family/group databases",
      "formatter": "http://peroxibase.toulouse.inra.fr/display_perox/view_perox/%s",
      "identifier": "72",
      "link_is_explicit": "true",
      "name": "PeroxiBase, a peroxidase database",
      "prefix": "PeroxiBase"
    }
  },
  "pesticides": {
    "description": "The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients.",
    "example": "derivatives%2Fthiocyclam%20hydrochloride",
    "homepage": "http://www.alanwood.net/pesticides",
    "name": "Alan Wood's Pesticides",
    "url": "http://www.alanwood.net/pesticides/$1.html"
  },
  "pfam": {
    "example": "PF11779",
    "go": {
      "description": "Pfam is a collection of protein families represented by sequence alignments and hidden Markov models (HMMs)",
      "homepage": "http://pfam.xfam.org",
      "name": "Pfam database of protein families",
      "prefix": "Pfam"
    },
    "mappings": {
      "go": "Pfam",
      "miriam": "pfam",
      "n2t": "pfam",
      "ncbi": "PFAM",
      "prefixcommons": "PFAM",
      "uniprot": "Pfam",
      "uniprot.database": "Pfam",
      "wikidata": "P3519"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.",
      "homepage": "https://pfam.xfam.org/",
      "id": "00000028",
      "name": "Pfam",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PF\\d{5}$",
      "prefix": "pfam",
      "provider_url": "https://pfam.xfam.org/family/$1",
      "sampleId": "PF01234"
    },
    "n2t": {
      "description": "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.",
      "example": "PF01234",
      "homepage": "https://pfam.xfam.org/",
      "name": "Pfam at EMBL-EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PF\\d{5}$",
      "prefix": "pfam",
      "provider_url": "https://pfam.xfam.org/family/$1"
    },
    "ncbi": {
      "example": "PF00003",
      "homepage": "http://pfam.xfam.org/",
      "name": "Collection of protein families",
      "prefix": "PFAM"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pfam/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PFAM"
    },
    "synonyms": [
      "PF"
    ],
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "https://pfam.xfam.org/family/%s",
      "identifier": "73",
      "link_is_explicit": "true",
      "name": "Pfam protein domain database",
      "prefix": "Pfam"
    },
    "wikidata": {
      "database": "Q906796",
      "database.homepage": "http://pfam.xfam.org/",
      "database.label": "Pfam",
      "format": "http://pfam.xfam.org/family?acc=$1",
      "homepage": "https://pfam.xfam.org/",
      "name": "Pfam ID",
      "pattern": "(PF\\d{5}|CL\\d{4})",
      "prefix": "P3519"
    }
  },
  "pfam.clan": {
    "name": "Pfam Clans"
  },
  "pfr": {
    "example": "1001",
    "name": "Proteoform Atlas",
    "pattern": "^\\d+$",
    "synonyms": [
      "TDR"
    ],
    "url": "http://repository.topdownproteomics.org/proteoforms/$1"
  },
  "pgdso": {
    "mappings": {
      "obofoundry": "pgdso",
      "prefixcommons": "PGDSO"
    },
    "obofoundry": {
      "contact": "po-discuss@plantontology.org",
      "contact.label": "Plant Ontology Administrators",
      "deprecated": true,
      "homepage": "http://www.plantontology.org",
      "name": "Plant Growth and Development Stage",
      "prefix": "pgdso"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PGDSO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PGDSO"
    }
  },
  "pgs": {
    "mappings": {
      "miriam": "pgs"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation.",
      "homepage": "http://pgscatalog.org",
      "id": "00000753",
      "name": "Polygenic Score Catalog",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PGS[0-9]{6}$",
      "prefix": "pgs",
      "provider_url": "https://www.pgscatalog.org/pgs/$1/",
      "sampleId": "PGS000018"
    }
  },
  "pgx": {
    "mappings": {
      "miriam": "pgx",
      "n2t": "pgx",
      "prefixcommons": "PGX"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.",
      "homepage": "https://progenetix.org/",
      "id": "00000600",
      "name": "Progenetix",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$",
      "prefix": "pgx",
      "provider_url": "https://progenetix.org/services/ids/$1",
      "sampleId": "pgxbs-kftva5zv"
    },
    "n2t": {
      "description": "The Progenetix database provides an overview of copy number abnormalities in human cancer from currently 32317 array and chromosomal Comparative Genomic Hybridization (CGH) experiments, as well as Whole Genome or Whole Exome Sequencing (WGS, WES) studies. The cancer profile data in Progenetix was curated from 1026 articles and represents 364 different cancer types, according to the International classification of Diseases in Oncology (ICD-O).",
      "example": "icdom:8500_3",
      "homepage": "http://progenetix.org/",
      "name": "Progenetix",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[\\w\\-:,]{3,64}$",
      "prefix": "pgx",
      "provider_url": "http://progenetix.org/pgx:$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pgx/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PGX"
    }
  },
  "pharmacodb.cell": {
    "cellosaurus": {
      "prefix": "PharmacoDB"
    },
    "example": "22RV1_12_2019",
    "name": "PharmacoDB Cells",
    "url": "https://pharmacodb.ca/cell_lines/$1"
  },
  "pharmacodb.dataset": {
    "example": "1",
    "name": "PharmacoDB Datasets",
    "url": "https://pharmacodb.ca/datasets/$1"
  },
  "pharmacodb.tissue": {
    "example": "13",
    "name": "PharmacoDB Tissues",
    "url": "https://pharmacodb.ca/tissues/$1"
  },
  "pharmgkb.disease": {
    "mappings": {
      "miriam": "pharmgkb.disease",
      "n2t": "pharmgkb.disease",
      "prefixcommons": "PHARMGKB.DISEASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
      "homepage": "http://www.pharmgkb.org/",
      "id": "00000090",
      "name": "PharmGKB Disease",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PA\\d+$",
      "prefix": "pharmgkb.disease",
      "provider_url": "http://www.pharmgkb.org/disease/$1",
      "sampleId": "PA447218"
    },
    "n2t": {
      "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
      "example": "PA447218",
      "homepage": "http://www.pharmgkb.org/",
      "name": "PharmGKB Disease at Stanford",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PA\\d+$",
      "prefix": "pharmgkb.disease",
      "provider_url": "http://www.pharmgkb.org/disease/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pharmgkb.disease/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHARMGKB.DISEASE"
    },
    "wikidata": {
      "prefix": "P7001"
    }
  },
  "pharmgkb.drug": {
    "mappings": {
      "miriam": "pharmgkb.drug",
      "n2t": "pharmgkb.drug",
      "prefixcommons": "PHARMGKB.DRUG"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
      "homepage": "http://www.pharmgkb.org/",
      "id": "00000091",
      "name": "PharmGKB Drug",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PA\\d+$",
      "prefix": "pharmgkb.drug",
      "provider_url": "http://www.pharmgkb.org/drug/$1",
      "sampleId": "PA448710"
    },
    "n2t": {
      "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
      "example": "PA448710",
      "homepage": "http://www.pharmgkb.org/",
      "name": "PharmGKB Drug at Stanford",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PA\\d+$",
      "prefix": "pharmgkb.drug",
      "provider_url": "http://www.pharmgkb.org/drug/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pharmgkb.drug/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHARMGKB.DRUG"
    },
    "wikidata": {
      "prefix": "P7001"
    }
  },
  "pharmgkb.gene": {
    "bioportal": {
      "name": "PharmGKB Ontology",
      "prefix": "PHARMGKB"
    },
    "go": {
      "formatter": "https://www.pharmgkb.org/do/serve?objId=$1",
      "homepage": "https://www.pharmgkb.org",
      "name": "Pharmacogenetics and Pharmacogenomics Knowledge Base",
      "prefix": "PharmGKB"
    },
    "mappings": {
      "bioportal": "PHARMGKB",
      "go": "PharmGKB",
      "miriam": "pharmgkb.gene",
      "n2t": "pharmgkb.gene",
      "prefixcommons": "PHARMGKB.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
      "homepage": "http://www.pharmgkb.org/",
      "id": "00000245",
      "name": "PharmGKB Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PA\\w+$",
      "prefix": "pharmgkb.gene",
      "provider_url": "http://www.pharmgkb.org/gene/$1",
      "sampleId": "PA131"
    },
    "n2t": {
      "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.",
      "example": "PA131",
      "homepage": "http://www.pharmgkb.org/",
      "name": "PharmGKB Gene at Stanford",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PA\\w+$",
      "prefix": "pharmgkb.gene",
      "provider_url": "http://www.pharmgkb.org/gene/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pharmgkb.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHARMGKB.GENE"
    },
    "wikidata": {
      "prefix": "P7001"
    }
  },
  "pharmgkb.pathways": {
    "mappings": {
      "miriam": "pharmgkb.pathways",
      "n2t": "pharmgkb.pathways",
      "prefixcommons": "PHARMGKB.PATHWAYS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r\nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.",
      "homepage": "http://www.pharmgkb.org/",
      "id": "00000089",
      "name": "PharmGKB Pathways",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PA\\d+$",
      "prefix": "pharmgkb.pathways",
      "provider_url": "http://www.pharmgkb.org/pathway/$1",
      "sampleId": "PA146123006"
    },
    "n2t": {
      "description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.  PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.",
      "example": "PA146123006",
      "homepage": "http://www.pharmgkb.org/",
      "name": "PharmGKB at Stanford",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PA\\d+$",
      "prefix": "pharmgkb.pathways",
      "provider_url": "http://www.pharmgkb.org/pathway/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pharmgkb.pathways/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHARMGKB.PATHWAYS"
    },
    "wikidata": {
      "prefix": "P7001"
    }
  },
  "phenolexplorer": {
    "mappings": {
      "miriam": "phenolexplorer",
      "n2t": "phenolexplorer",
      "prefixcommons": "PHENOLEXPLORER"
    },
    "miriam": {
      "deprecated": false,
      "description": "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis.",
      "homepage": "http://www.phenol-explorer.eu/foods/",
      "id": "00000268",
      "name": "Phenol-Explorer",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "phenolexplorer",
      "provider_url": "http://phenol-explorer.eu/foods/$1",
      "sampleId": "75"
    },
    "n2t": {
      "description": "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis.",
      "example": "75",
      "homepage": "http://www.phenol-explorer.eu/foods/",
      "name": "Phenol-Explorer Database on Phenol content of foods",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "phenolexplorer",
      "provider_url": "http://phenol-explorer.eu/foods/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/phenolexplorer/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHENOLEXPLORER"
    }
  },
  "phi": {
    "mappings": {
      "ols": "phi"
    },
    "ols": {
      "description": "Pathogen-Host Interaction database Ontology used by Ensembl",
      "download": "file:/nfs/panda/ensembl/production/ensprod/ontologies/phi/PHI.obo",
      "name": "PHI-base Ontology",
      "prefix": "phi",
      "version": "2018-12-10"
    }
  },
  "phipo": {
    "bioportal": {
      "name": "Pathogen Host Interaction Phenotype Ontology",
      "prefix": "PHIPO"
    },
    "example": "0000001",
    "mappings": {
      "bioportal": "PHIPO",
      "obofoundry": "phipo",
      "ols": "phipo"
    },
    "obofoundry": {
      "contact": "alayne.cuzick@rothamsted.ac.uk",
      "contact.label": "Alayne Cuzick",
      "deprecated": false,
      "description": "PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions.",
      "download.obo": "http://purl.obolibrary.org/obo/phipo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/phipo.owl",
      "homepage": "https://github.com/PHI-base/phipo",
      "license": "CC-BY",
      "name": "Pathogen Host Interaction Phenotype Ontology",
      "prefix": "phipo"
    },
    "ols": {
      "description": "Ontology of species-neutral phenotypes observed in pathogen-host interactions.",
      "download": "http://purl.obolibrary.org/obo/phipo.owl",
      "homepage": "https://github.com/PHI-base/phipo",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Pathogen Host Interactions Phenotype Ontology",
      "prefix": "phipo",
      "version": "2021-07-14",
      "version.iri": "http://purl.obolibrary.org/obo/phipo/releases/2021-07-14/phipo.owl"
    },
    "pattern": "^\\d{7}$"
  },
  "phosphopoint.kinase": {
    "mappings": {
      "miriam": "phosphopoint.kinase",
      "n2t": "phosphopoint.kinase",
      "prefixcommons": "PHOSPHOPOINT.KINASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information.",
      "homepage": "http://kinase.bioinformatics.tw/",
      "id": "00000385",
      "name": "PhosphoPoint Kinase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "phosphopoint.kinase",
      "provider_url": "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1",
      "sampleId": "AURKA"
    },
    "n2t": {
      "description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information.",
      "example": "AURKA",
      "homepage": "http://kinase.bioinformatics.tw/",
      "name": "PhosphoPoint Kinase at National Taiwan University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "phosphopoint.kinase",
      "provider_url": "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/phosphopoint.kinase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHOSPHOPOINT.KINASE"
    }
  },
  "phosphopoint.protein": {
    "mappings": {
      "miriam": "phosphopoint.protein",
      "n2t": "phosphopoint.protein",
      "prefixcommons": "PHOSPHOPOINT.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information.",
      "homepage": "http://kinase.bioinformatics.tw/",
      "id": "00000386",
      "name": "PhosphoPoint Phosphoprotein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "phosphopoint.protein",
      "provider_url": "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0",
      "sampleId": "AURKA"
    },
    "n2t": {
      "description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information.",
      "example": "AURKA",
      "homepage": "http://kinase.bioinformatics.tw/",
      "name": "PhosphoPoint Phosphoprotein at National Taiwan University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "phosphopoint.protein",
      "provider_url": "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/phosphopoint.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHOSPHOPOINT.PROTEIN"
    }
  },
  "phosphosite.protein": {
    "mappings": {
      "miriam": "phosphosite.protein",
      "n2t": "phosphosite.protein",
      "prefixcommons": "PHOSPHOSITE.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database.",
      "homepage": "http://www.phosphosite.org/homeAction.do",
      "id": "00000105",
      "name": "PhosphoSite Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{5}$",
      "prefix": "phosphosite.protein",
      "provider_url": "http://www.phosphosite.org/proteinAction.do?id=$1",
      "sampleId": "12300"
    },
    "n2t": {
      "description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database.",
      "example": "12300",
      "homepage": "http://www.phosphosite.org/homeAction.do",
      "name": "PhosphoSite",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{5}$",
      "prefix": "phosphosite.protein",
      "provider_url": "http://www.phosphosite.org/proteinAction.do?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/phosphosite.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHOSPHOSITE.PROTEIN"
    }
  },
  "phosphosite.residue": {
    "mappings": {
      "miriam": "phosphosite.residue",
      "n2t": "phosphosite.residue",
      "prefixcommons": "PHOSPHOSITE.RESIDUE"
    },
    "miriam": {
      "deprecated": false,
      "description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence.",
      "homepage": "http://www.phosphosite.org/homeAction.do",
      "id": "00000125",
      "name": "PhosphoSite Residue",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "phosphosite.residue",
      "provider_url": "http://www.phosphosite.org/siteAction.do?id=$1",
      "sampleId": "2842"
    },
    "n2t": {
      "description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence.",
      "example": "2842",
      "homepage": "http://www.phosphosite.org/homeAction.do",
      "name": "PhosphoSite Residue",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "phosphosite.residue",
      "provider_url": "http://www.phosphosite.org/siteAction.do?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/phosphosite.residue/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHOSPHOSITE.RESIDUE"
    }
  },
  "phylomedb": {
    "mappings": {
      "miriam": "phylomedb",
      "n2t": "phylomedb",
      "prefixcommons": "PHYLOMEDB",
      "uniprot": "PhylomeDB",
      "uniprot.database": "PhylomeDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.",
      "homepage": "http://phylomedb.org/",
      "id": "00000223",
      "name": "PhylomeDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "phylomedb",
      "provider_url": "http://phylomedb.org/?seqid=$1",
      "sampleId": "Phy000CLXM_RAT"
    },
    "n2t": {
      "description": "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.",
      "example": "Phy000CLXM_RAT",
      "homepage": "http://phylomedb.org/",
      "name": "PhylomeDB at Centro de Investigaci&#xF3;n Pr&#xED;ncipe Felipe",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "phylomedb",
      "provider_url": "http://phylomedb.org/?seqid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/phylomedb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHYLOMEDB"
    },
    "uniprot": {
      "category": "Phylogenomic databases",
      "formatter": "http://phylomedb.org/?q=search_tree&seqid=%s",
      "identifier": "144",
      "link_is_explicit": "true",
      "name": "Database for complete collections of gene phylogenies",
      "prefix": "PhylomeDB"
    }
  },
  "phytozome.locus": {
    "mappings": {
      "miriam": "phytozome.locus",
      "n2t": "phytozome.locus",
      "ncbi": "Phytozome",
      "prefixcommons": "PHYTOZOME.LOCUS"
    },
    "miriam": {
      "deprecated": false,
      "description": "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.",
      "homepage": "http://www.phytozome.net/",
      "id": "00000432",
      "name": "Phytozome Locus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "phytozome.locus",
      "provider_url": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1",
      "sampleId": "Glyma0021s00410"
    },
    "n2t": {
      "description": "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.",
      "example": "Glyma0021s00410",
      "homepage": "http://www.phytozome.net/",
      "name": "Phytozome Locus at Joint Genome Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "phytozome.locus",
      "provider_url": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1"
    },
    "ncbi": {
      "example": "Glyma0021s00410",
      "homepage": "http://phytozome.jgi.doe.gov/pz/portal.html",
      "name": "Plant Genome Network",
      "prefix": "Phytozome"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/phytozome.locus/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PHYTOZOME.LOCUS"
    },
    "synonyms": [
      "JGI Phytozome"
    ]
  },
  "pictar": {
    "deprecated": true,
    "example": "hsa-let-7a",
    "homepage": "https://pictar.mdc-berlin.de/",
    "name": "PicTar",
    "synonyms": [
      "pictar-vert"
    ]
  },
  "pid.pathway": {
    "example": "eff796f3-6195-11e5-8ac5-06603eb7f303",
    "mappings": {
      "miriam": "pid.pathway",
      "n2t": "pid.pathway",
      "prefixcommons": "PID.PATHWAY"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information.",
      "homepage": "http://pid.nci.nih.gov/",
      "id": "00000133",
      "name": "NCI Pathway Interaction Database: Pathway",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "pid.pathway",
      "provider_url": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1",
      "sampleId": "pi3kcipathway"
    },
    "n2t": {
      "description": "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information.",
      "example": "pi3kcipathway",
      "homepage": "http://pid.nci.nih.gov/",
      "name": "NCI Pathway Interaction Database (Pathway)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "pid.pathway",
      "provider_url": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1"
    },
    "pattern": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$",
    "prefixcommons": {
      "formatter": "http://identifiers.org/pid.pathway/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PID.PATHWAY"
    },
    "synonyms": [
      "pid"
    ]
  },
  "pigqtldb": {
    "mappings": {
      "miriam": "pigqtldb",
      "n2t": "pigqtldb",
      "prefixcommons": "PIGQTLDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.",
      "homepage": "https://www.animalgenome.org/QTLdb",
      "id": "00000506",
      "name": "Animal Genome Pig QTL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pigqtldb",
      "provider_url": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1",
      "sampleId": "14"
    },
    "n2t": {
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.",
      "example": "14",
      "homepage": "http://www.animalgenome.org/cgi-bin/QTLdb/SS/index",
      "name": "Animal QTL Pig at Iowa State University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pigqtldb",
      "provider_url": "http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pigqtldb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PIGQTLDB"
    }
  },
  "pina": {
    "mappings": {
      "miriam": "pina",
      "n2t": "pina",
      "prefixcommons": "PINA"
    },
    "miriam": {
      "deprecated": false,
      "description": "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.",
      "homepage": "http://cbg.garvan.unsw.edu.au/pina/",
      "id": "00000359",
      "name": "PINA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
      "prefix": "pina",
      "provider_url": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac=$1&showExtend=null",
      "sampleId": "Q13485"
    },
    "n2t": {
      "description": "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.",
      "example": "Q13485",
      "homepage": "http://cbg.garvan.unsw.edu.au/pina/",
      "name": "Protein Interaction Network Analysis (PINA) at Garvan Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
      "prefix": "pina",
      "provider_url": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac=$1&showExtend=null"
    },
    "name": "Protein Interaction Network Analysis",
    "prefixcommons": {
      "formatter": "http://identifiers.org/pina/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PINA"
    }
  },
  "piroplasma": {
    "mappings": {
      "miriam": "piroplasma",
      "n2t": "piroplasma",
      "prefixcommons": "PIROPLASMA"
    },
    "miriam": {
      "deprecated": false,
      "description": "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "http://piroplasmadb.org/",
      "id": "00000351",
      "name": "PiroplasmaDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TA\\d+$",
      "prefix": "piroplasma",
      "provider_url": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1",
      "sampleId": "TA14985"
    },
    "n2t": {
      "description": "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "TA14985",
      "homepage": "http://piroplasmadb.org/",
      "name": "PiroplasmaBD at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TA\\d+$",
      "prefix": "piroplasma",
      "provider_url": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/piroplasma/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PIROPLASMA"
    }
  },
  "pirsf": {
    "go": {
      "formatter": "http://pir.georgetown.edu/cgi-bin/ipcSF?id=$1",
      "homepage": "http://pir.georgetown.edu/pirsf/",
      "name": "PIR Superfamily Classification System",
      "prefix": "PIRSF"
    },
    "mappings": {
      "go": "PIRSF",
      "miriam": "pirsf",
      "n2t": "pirsf",
      "prefixcommons": "PIRSF",
      "uniprot": "PIRSF",
      "uniprot.database": "PIRSF"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships.",
      "homepage": "https://pir.georgetown.edu/",
      "id": "00000017",
      "name": "PIRSF",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PIRSF\\d{6}$",
      "prefix": "pirsf",
      "provider_url": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1",
      "sampleId": "PIRSF000100"
    },
    "n2t": {
      "description": "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships.",
      "example": "PIRSF000100",
      "homepage": "https://pir.georgetown.edu/",
      "name": "PIRSF",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PIRSF\\d{6}$",
      "prefix": "pirsf",
      "provider_url": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pirsf/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PIRSF"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "https://proteininformationresource.org/cgi-bin/ipcSF?id=%s",
      "identifier": "79",
      "link_is_explicit": "true",
      "name": "PIRSF; a whole-protein classification database",
      "prefix": "PIRSF"
    }
  },
  "pkdb": {
    "mappings": {
      "miriam": "pkdb"
    },
    "miriam": {
      "deprecated": false,
      "description": "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. ",
      "homepage": "https://www.hu-berlin.de/?set_language=en&cl=en",
      "id": "00000708",
      "name": "PK-DB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PKDB[0-9]{5}$",
      "prefix": "pkdb",
      "provider_url": "https://pk-db.com/data/$1",
      "sampleId": "PKDB00198"
    }
  },
  "plana": {
    "bioportal": {
      "name": "Planarian Anatomy and Developmental Stage Ontolgoy",
      "prefix": "PLANA"
    },
    "example": "0000001",
    "mappings": {
      "bioportal": "PLANA",
      "obofoundry": "plana",
      "ols": "plana",
      "prefixcommons": "PLANA"
    },
    "obofoundry": {
      "contact": "smr@stowers.org",
      "contact.label": "Sofia Robb",
      "deprecated": false,
      "description": "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes.",
      "download.obo": "http://purl.obolibrary.org/obo/plana.obo",
      "download.owl": "http://purl.obolibrary.org/obo/plana.owl",
      "homepage": "https://github.com/obophenotype/planaria-ontology",
      "license": "CC-BY",
      "name": "planaria-ontology",
      "prefix": "plana"
    },
    "ols": {
      "description": "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes.",
      "download": "http://purl.obolibrary.org/obo/plana.owl",
      "homepage": "https://github.com/obophenotype/planaria-ontology",
      "name": "planaria-ontology",
      "prefix": "plana",
      "version": "2021-04-05",
      "version.iri": "http://purl.obolibrary.org/obo/plana/releases/2021-04-05"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PLANA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PLANA"
    }
  },
  "planp": {
    "bioportal": {
      "name": "Planarian Phenotype Ontology",
      "prefix": "PLANP"
    },
    "example": "0000001",
    "mappings": {
      "bioportal": "PLANP",
      "obofoundry": "planp",
      "ols": "planp"
    },
    "obofoundry": {
      "contact": "smr@stowers.org",
      "contact.label": "Sofia Robb",
      "deprecated": false,
      "description": "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.",
      "download.obo": "http://purl.obolibrary.org/obo/planp.obo",
      "download.owl": "http://purl.obolibrary.org/obo/planp.owl",
      "homepage": "https://github.com/obophenotype/planarian-phenotype-ontology",
      "license": "CC-BY",
      "name": "Planarian Phenotype Ontology",
      "prefix": "planp"
    },
    "ols": {
      "description": "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.",
      "download": "http://purl.obolibrary.org/obo/planp.owl",
      "homepage": "https://github.com/obophenotype/planarian-phenotype-ontology",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Planarian Phenotype Ontology (PLANP)",
      "prefix": "planp",
      "version": "2020-03-28",
      "version.iri": "http://purl.obolibrary.org/obo/planp/releases/2020-03-28/planp.owl"
    },
    "pattern": "^\\d+$"
  },
  "planttfdb": {
    "mappings": {
      "miriam": "planttfdb",
      "n2t": "planttfdb",
      "prefixcommons": "PLANTTFDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.",
      "homepage": "http://planttfdb.cbi.pku.edu.cn",
      "id": "00000579",
      "name": "Plant Transcription Factor Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$",
      "prefix": "planttfdb",
      "provider_url": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1",
      "sampleId": "Ath_AT1G01030.1"
    },
    "n2t": {
      "description": "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.",
      "example": "Ath_AT1G01030.1",
      "homepage": "http://planttfdb.cbi.pku.edu.cn",
      "name": "PlantTFDB at Peking University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$",
      "prefix": "planttfdb",
      "provider_url": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/planttfdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PLANTTFDB"
    }
  },
  "plasmodb": {
    "go": {
      "formatter": "http://www.plasmodb.org/gene/$1",
      "homepage": "http://plasmodb.org/",
      "name": "PlasmoDB Plasmodium Genome Resource",
      "prefix": "ApiDB_PlasmoDB"
    },
    "mappings": {
      "go": "ApiDB_PlasmoDB",
      "miriam": "plasmodb",
      "n2t": "plasmodb",
      "ncbi": "ApiDB_PlasmoDB",
      "prefixcommons": "PLASMODB"
    },
    "miriam": {
      "deprecated": false,
      "description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "http://plasmodb.org/plasmo/",
      "id": "00000150",
      "name": "PlasmoDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "plasmodb",
      "provider_url": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1",
      "sampleId": "PF11_0344"
    },
    "n2t": {
      "description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "PF11_0344",
      "homepage": "http://plasmodb.org/plasmo/",
      "name": "PlasmoDB at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "plasmodb",
      "provider_url": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
    },
    "ncbi": {
      "example": "PF11_0344",
      "homepage": "http://www.plasmodb.org/plasmo/home.jsp",
      "name": "Plasmodium Genome Resources",
      "prefix": "ApiDB_PlasmoDB"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/plasmodb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PLASMODB"
    },
    "synonyms": [
      "ApiDB_PlasmoDB"
    ]
  },
  "plo": {
    "mappings": {
      "obofoundry": "plo",
      "prefixcommons": "PLO"
    },
    "name": "Plasmodium Life Cycle",
    "obofoundry": {
      "contact": "mb4@sanger.ac.uk",
      "contact.label": "Matt Berriman",
      "deprecated": true,
      "homepage": "http://www.sanger.ac.uk/Users/mb4/PLO/",
      "name": "Plasmodium life cycle",
      "prefix": "plo"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PLO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PLO"
    }
  },
  "pmap.cutdb": {
    "mappings": {
      "miriam": "pmap.cutdb",
      "n2t": "pmap.cutdb",
      "prefixcommons": "PMAP.CUTDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites).",
      "homepage": "http://cutdb.burnham.org",
      "id": "00000225",
      "name": "CutDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pmap.cutdb",
      "provider_url": "http://cutdb.burnham.org/relation/show/$1",
      "sampleId": "25782"
    },
    "n2t": {
      "description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites).",
      "example": "25782",
      "homepage": "http://cutdb.burnham.org",
      "name": "CutDB at The Burnham Institute for Medical Research",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pmap.cutdb",
      "provider_url": "http://cutdb.burnham.org/relation/show/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pmap.cutdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PMAP.CUTDB"
    }
  },
  "pmap.substratedb": {
    "mappings": {
      "miriam": "pmap.substratedb",
      "n2t": "pmap.substratedb",
      "prefixcommons": "PMAP.SUBSTRATEDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.",
      "homepage": "http://substrate.burnham.org/",
      "id": "00000224",
      "name": "SubstrateDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pmap.substratedb",
      "provider_url": "http://substrate.burnham.org/protein/annotation/$1/html",
      "sampleId": "1915"
    },
    "n2t": {
      "description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.",
      "example": "1915",
      "homepage": "http://substrate.burnham.org/",
      "name": "SubstrateDB at The Burnham Institute for Medical Research",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pmap.substratedb",
      "provider_url": "http://substrate.burnham.org/protein/annotation/$1/html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pmap.substratedb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PMAP.SUBSTRATEDB"
    }
  },
  "pmc": {
    "go": {
      "formatter": "https://www.ncbi.nlm.nih.gov/pmc/articles/$1",
      "homepage": "https://www.ncbi.nlm.nih.gov/pmc/",
      "name": "Pubmed Central",
      "prefix": "PMCID",
      "synonyms": [
        "PMC"
      ]
    },
    "mappings": {
      "go": "PMCID",
      "miriam": "pmc",
      "n2t": "pmc",
      "prefixcommons": "PMCID"
    },
    "miriam": {
      "deprecated": false,
      "description": "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature.",
      "homepage": "http://europepmc.org/",
      "id": "00000147",
      "name": "PMC International",
      "namespaceEmbeddedInLui": false,
      "pattern": "PMC\\d+",
      "prefix": "pmc",
      "provider_url": "http://europepmc.org/articles/$1",
      "sampleId": "PMC3084216"
    },
    "n2t": {
      "description": "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature.",
      "example": "PMC3084216",
      "homepage": "http://europepmc.org/",
      "name": "Europe PMC",
      "namespaceEmbeddedInLui": false,
      "pattern": "PMC\\d+",
      "prefix": "pmc",
      "provider_url": "http://europepmc.org/articles/$1"
    },
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/pmc/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "PMCID"
    },
    "synonyms": [
      "PMCID",
      "PMC"
    ],
    "wikidata": {
      "prefix": "P932"
    }
  },
  "pmdb": {
    "mappings": {
      "miriam": "pmdb",
      "n2t": "pmdb",
      "prefixcommons": "PMDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.",
      "homepage": "https://bioinformatics.cineca.it/PMDB/",
      "id": "00000190",
      "name": "Protein Model Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PM\\d{7}",
      "prefix": "pmdb",
      "provider_url": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1",
      "sampleId": "PM0012345"
    },
    "n2t": {
      "description": "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.",
      "example": "PM0012345",
      "homepage": "https://bioinformatics.cineca.it/PMDB/",
      "name": "Protein Model Database at University of Rome",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PM\\d{7}",
      "prefix": "pmdb",
      "provider_url": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pmdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PMDB"
    }
  },
  "pmp": {
    "mappings": {
      "miriam": "pmp",
      "n2t": "pmp",
      "prefixcommons": "PMP"
    },
    "miriam": {
      "deprecated": false,
      "description": "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.",
      "homepage": "http://www.proteinmodelportal.org/",
      "id": "00000227",
      "name": "PMP",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
      "prefix": "pmp",
      "provider_url": "https://registry.identifiers.org/deprecation/resources/MIR:00100286/$1",
      "sampleId": "Q0VCA6"
    },
    "n2t": {
      "description": "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.",
      "example": "Q0VCA6",
      "homepage": "http://www.proteinmodelportal.org/",
      "name": "PMP at University of Basel",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
      "prefix": "pmp",
      "provider_url": "http://www.proteinmodelportal.org/query/uniprot/$1"
    },
    "name": "Protein Model Portal",
    "prefixcommons": {
      "formatter": "http://identifiers.org/pmp/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PMP"
    }
  },
  "po": {
    "bioportal": {
      "name": "Plant Ontology",
      "prefix": "PO"
    },
    "go": {
      "homepage": "http://www.planteome.org/",
      "name": "Plant Ontology",
      "prefix": "PO"
    },
    "mappings": {
      "bioportal": "PO",
      "go": "PO",
      "miriam": "po",
      "n2t": "po",
      "obofoundry": "po",
      "ols": "po",
      "prefixcommons": "PO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/po",
      "id": "00000307",
      "name": "Plant Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^PO:\\d+$",
      "prefix": "po",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/po/terms?obo_id=PO:$1",
      "sampleId": "0009089"
    },
    "n2t": {
      "description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.",
      "example": "0009089",
      "homepage": "http://bioportal.bioontology.org/ontologies/PO",
      "name": "Plant Ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^PO:\\d+$",
      "prefix": "po",
      "provider_url": "http://purl.bioontology.org/ontology/PO/PO:$1"
    },
    "obofoundry": {
      "contact": "jaiswalp@science.oregonstate.edu",
      "contact.label": "Pankaj Jaiswal",
      "deprecated": false,
      "description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.",
      "download.obo": "http://purl.obolibrary.org/obo/po.obo",
      "download.owl": "http://purl.obolibrary.org/obo/po.owl",
      "homepage": "http://browser.planteome.org/amigo",
      "license": "CC-BY 4.0",
      "name": "Plant Ontology",
      "prefix": "po"
    },
    "ols": {
      "description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.",
      "download": "http://purl.obolibrary.org/obo/po.owl",
      "homepage": "http://browser.planteome.org/amigo",
      "name": "Plant Ontology",
      "prefix": "po",
      "version": "2020-08-20",
      "version.iri": "http://purl.obolibrary.org/obo/po/releases/2020-08-20/po.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PO"
    }
  },
  "pocketome": {
    "mappings": {
      "miriam": "pocketome",
      "n2t": "pocketome",
      "prefixcommons": "POCKETOME"
    },
    "miriam": {
      "deprecated": false,
      "description": "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.",
      "homepage": "http://www.pocketome.org/sfSearch.cgi?act=browseall",
      "id": "00000400",
      "name": "Pocketome",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z_0-9]+",
      "prefix": "pocketome",
      "provider_url": "http://www.pocketome.org/files/$1.html",
      "sampleId": "1433C_TOBAC_1_252"
    },
    "n2t": {
      "description": "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.",
      "example": "1433C_TOBAC_1_252",
      "homepage": "http://www.pocketome.org/sfSearch.cgi?act=browseall",
      "name": "Pocketome at UCSD Skaggs School",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z_0-9]+",
      "prefix": "pocketome",
      "provider_url": "http://www.pocketome.org/files/$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pocketome/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "POCKETOME"
    }
  },
  "polbase": {
    "mappings": {
      "miriam": "polbase",
      "n2t": "polbase",
      "prefixcommons": "POLBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity.",
      "homepage": "http://polbase.neb.com/",
      "id": "00000355",
      "name": "PolBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z-0-9]+$",
      "prefix": "polbase",
      "provider_url": "https://polbase.neb.com/polymerases/$1#sequences",
      "sampleId": "19-T4"
    },
    "n2t": {
      "description": "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity.",
      "example": "19-T4",
      "homepage": "http://polbase.neb.com/",
      "name": "PolBase at New England BioLabs",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z-0-9]+$",
      "prefix": "polbase",
      "provider_url": "https://polbase.neb.com/polymerases/$1#sequences"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/polbase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "POLBASE"
    }
  },
  "pombase": {
    "go": {
      "formatter": "https://www.pombase.org/gene/$1",
      "homepage": "https://www.pombase.org/",
      "name": "PomBase",
      "prefix": "PomBase"
    },
    "mappings": {
      "go": "PomBase",
      "miriam": "pombase",
      "n2t": "pombase",
      "ncbi": "PomBase",
      "prefixcommons": "PomBase",
      "uniprot": "PomBase",
      "uniprot.database": "PomBase",
      "wikidata": "P6245"
    },
    "miriam": {
      "deprecated": false,
      "description": "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.",
      "homepage": "http://www.pombase.org/",
      "id": "00000335",
      "name": "PomBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^S\\w+(\\.)?\\w+(\\.)?$",
      "prefix": "pombase",
      "provider_url": "http://www.pombase.org/spombe/result/$1",
      "sampleId": "SPCC13B11.01"
    },
    "n2t": {
      "description": "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.",
      "example": "SPCC13B11.01",
      "homepage": "http://www.pombase.org/",
      "name": "PomBase at University of Cambridge",
      "namespaceEmbeddedInLui": false,
      "pattern": "^S\\w+(\\.)?\\w+(\\.)?$",
      "prefix": "pombase",
      "provider_url": "http://www.pombase.org/spombe/result/$1"
    },
    "ncbi": {
      "example": "SPBC11B10.09",
      "homepage": "http://www.pombase.org/",
      "name": "Database of Structural and Functional Data for Schizosaccaromyces pombe",
      "prefix": "PomBase"
    },
    "prefixcommons": {
      "formatter": "https://www.pombase.org/spombe/result/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "PomBase"
    },
    "synonyms": [
      "PomBase"
    ],
    "uniprot": {
      "category": "Organism-specific databases",
      "comment": "Replacement for GeneDB_Spombe",
      "formatter": "https://www.pombase.org/spombe/result/%s",
      "identifier": "31",
      "link_is_explicit": "true",
      "name": "Schizosaccharomyces pombe database",
      "prefix": "PomBase"
    },
    "wikidata": {
      "database": "Q25304673",
      "database.homepage": "https://www.pombase.org",
      "database.label": "PomBase",
      "format": "https://www.pombase.org/gene/$1",
      "name": "PomBase systematic ID",
      "prefix": "P6245"
    }
  },
  "poro": {
    "bioportal": {
      "name": "Porifera Ontology",
      "prefix": "PORO"
    },
    "example": "0000550",
    "mappings": {
      "bioportal": "PORO",
      "obofoundry": "poro",
      "ols": "poro",
      "prefixcommons": "PORO"
    },
    "obofoundry": {
      "contact": "robert.thacker@stonybrook.edu",
      "contact.label": "Bob Thacker",
      "deprecated": false,
      "description": "An ontology covering the anatomy of the taxon Porifera (sponges)",
      "download.obo": "http://purl.obolibrary.org/obo/poro.obo",
      "download.owl": "http://purl.obolibrary.org/obo/poro.owl",
      "homepage": "https://github.com/obophenotype/porifera-ontology",
      "license": "CC-BY",
      "name": "Porifera Ontology",
      "prefix": "poro"
    },
    "ols": {
      "description": "An ontology describing the anatomical structures and characteristics of Porifera (sponges)",
      "download": "http://purl.obolibrary.org/obo/poro.owl",
      "homepage": "https://github.com/obophenotype/porifera-ontology",
      "name": "Porifera (sponge) ontology",
      "prefix": "poro",
      "version": "2016-09-13",
      "version.iri": "http://purl.obolibrary.org/obo/poro/releases/2016-09-13/poro.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PORO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PORO"
    }
  },
  "ppdb": {
    "example": "1484",
    "homepage": "https://sitem.herts.ac.uk/aeru/ppdb/",
    "name": "Pesticide Properties DataBase",
    "url": "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm"
  },
  "ppo": {
    "bioportal": {
      "name": "Plant Phenology Ontology",
      "prefix": "PPO"
    },
    "mappings": {
      "bioportal": "PPO",
      "obofoundry": "ppo",
      "ols": "ppo",
      "prefixcommons": "PPO"
    },
    "obofoundry": {
      "contact": "rlwalls2008@gmail.com",
      "contact.label": "Ramona Walls",
      "deprecated": false,
      "description": "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.",
      "download.owl": "http://purl.obolibrary.org/obo/ppo.owl",
      "homepage": "https://github.com/PlantPhenoOntology/PPO",
      "license": "CC-BY",
      "name": "Plant Phenology Ontology",
      "prefix": "ppo"
    },
    "ols": {
      "contact": "ppo-discuss@googlegroups.com",
      "description": "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.",
      "download": "http://purl.obolibrary.org/obo/ppo.owl",
      "homepage": "https://github.com/PlantPhenoOntology/PPO",
      "name": "Plant Phenology Ontology",
      "prefix": "ppo",
      "version": "2018-10-26",
      "version.iri": "https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/releases/2018-10-26/ppo.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PPO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PPO"
    }
  },
  "ppr": {
    "description": "Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000.",
    "example": "ppr103739",
    "name": "Eurpoe PMC Preprints",
    "url": "https://europepmc.org/article/ppr/$1"
  },
  "pr": {
    "bioportal": {
      "name": "Protein Ontology",
      "prefix": "PR"
    },
    "go": {
      "formatter": "https://proconsortium.org/app/entry/PR_$1",
      "homepage": "https://proconsortium.org/",
      "name": "Protein Ontology",
      "prefix": "PR",
      "synonyms": [
        "PRO"
      ]
    },
    "mappings": {
      "bioportal": "PR",
      "go": "PR",
      "miriam": "pr",
      "n2t": "pr",
      "obofoundry": "pr",
      "ols": "pr",
      "prefixcommons": "PR",
      "uniprot": "PRO",
      "uniprot.database": "PRO",
      "wikidata": "P4926"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/pr",
      "id": "00000141",
      "name": "Protein Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^PR:P?\\d+$",
      "prefix": "pr",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/pr/terms?obo_id=PR:$1",
      "sampleId": "000000024"
    },
    "n2t": {
      "description": "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.",
      "example": "000000024",
      "homepage": "https://proconsortium.org/",
      "name": "Protein Ontology at Georgetown",
      "namespaceEmbeddedInLui": true,
      "pattern": "^PR\\:P?\\d+$",
      "prefix": "pr",
      "provider_url": "https://proconsortium.org/app/entry/PR:$1"
    },
    "name": "Protein Ontology",
    "obofoundry": {
      "contact": "dan5@georgetown.edu",
      "contact.label": "Darren Natale",
      "deprecated": false,
      "description": "An ontological representation of protein-related entities",
      "download.obo": "http://purl.obolibrary.org/obo/pr.obo",
      "download.owl": "http://purl.obolibrary.org/obo/pr.owl",
      "homepage": "http://proconsortium.org",
      "license": "CC-BY",
      "name": "PRotein Ontology (PRO)",
      "prefix": "pr"
    },
    "ols": {
      "description": "An ontological representation of protein-related entities",
      "download": "http://purl.obolibrary.org/obo/pr.owl",
      "homepage": "http://proconsortium.org",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "PRotein Ontology (PRO)",
      "prefix": "pr",
      "version.iri": "http://purl.obolibrary.org/obo/pr/63.0/pr.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PR_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PR"
    },
    "synonyms": [
      "PR",
      "PRO"
    ],
    "uniprot": {
      "category": "Miscellaneous databases",
      "formatter": "https://proconsortium.org/app/entry/%s",
      "identifier": "181",
      "link_is_explicit": "true",
      "name": "Protein Ontology",
      "prefix": "PRO"
    },
    "wikidata": {
      "database": "Q55118584",
      "database.homepage": "http://pir.georgetown.edu/pro",
      "database.label": "Protein Ontology",
      "format": "https://proconsortium.org/app/entry/$1/",
      "homepage": "https://pir.georgetown.edu/pro/pro.shtml",
      "name": "PRotein Ontology ID",
      "pattern": "PR:\\d*",
      "prefix": "P4926"
    }
  },
  "pride": {
    "cellosaurus": {
      "category": "Proteomic databases",
      "homepage": "https://www.ebi.ac.uk/pride/archive/",
      "name": "PRoteomics IDEntifications archive",
      "prefix": "PRIDE",
      "url": "https://www.ebi.ac.uk/pride/archive/projects/$1"
    },
    "mappings": {
      "cellosaurus": "PRIDE",
      "fairsharing": "FAIRsharing.e1byny",
      "miriam": "pride",
      "n2t": "pride",
      "ols": "pride",
      "prefixcommons": "PRIDE",
      "uniprot": "PRIDE",
      "uniprot.database": "PRIDE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.",
      "homepage": "https://www.ebi.ac.uk/pride/",
      "id": "00000065",
      "name": "PRIDE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pride",
      "provider_url": "https://www.ebi.ac.uk/pride/archive/assays/$1",
      "sampleId": "1"
    },
    "n2t": {
      "description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.",
      "example": "1",
      "homepage": "https://www.ebi.ac.uk/pride/",
      "name": "PRIDE at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pride",
      "provider_url": "https://www.ebi.ac.uk/pride/archive/assays/$1"
    },
    "ols": {
      "description": "The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence.",
      "download": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/pride_cv.obo",
      "homepage": "https://github.com/PRIDE-Utilities/pride-ontology",
      "name": "PRIDE Controlled Vocabulary",
      "prefix": "pride"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pride/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PRIDE"
    },
    "uniprot": {
      "category": "Proteomic databases",
      "formatter": "https://www.ebi.ac.uk/pride/searchSummary.do?queryTypeSelected=identification%20accession%20number&identificationAccessionNumber=%s",
      "identifier": "130",
      "link_is_explicit": "true",
      "name": "PRoteomics IDEntifications database",
      "prefix": "PRIDE"
    }
  },
  "pride.project": {
    "mappings": {
      "miriam": "pride.project",
      "n2t": "pride.project",
      "prefixcommons": "PRIDE.PROJECT"
    },
    "miriam": {
      "deprecated": false,
      "description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.",
      "homepage": "https://www.ebi.ac.uk/pride/",
      "id": "00000515",
      "name": "PRIDE Project",
      "namespaceEmbeddedInLui": false,
      "pattern": "^P(X|R)D\\d{6}$",
      "prefix": "pride.project",
      "provider_url": "https://www.ebi.ac.uk/pride/archive/projects/$1",
      "sampleId": "PXD000440"
    },
    "n2t": {
      "description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.",
      "example": "PXD000440",
      "homepage": "https://www.ebi.ac.uk/pride/",
      "name": "PRIDE Project at EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^P(X|R)D\\d{6}$",
      "prefix": "pride.project",
      "provider_url": "https://www.ebi.ac.uk/pride/archive/projects/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/pride.project/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PRIDE.PROJECT"
    }
  },
  "prints": {
    "go": {
      "formatter": "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&regexpr=off&prints_accn=$1",
      "homepage": "http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/",
      "name": "PRINTS compendium of protein fingerprints",
      "prefix": "PRINTS"
    },
    "mappings": {
      "go": "PRINTS",
      "miriam": "prints",
      "n2t": "prints",
      "prefixcommons": "PRINTS",
      "uniprot": "PRINTS",
      "uniprot.database": "PRINTS"
    },
    "miriam": {
      "deprecated": false,
      "description": "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours.",
      "homepage": "http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/",
      "id": "00000061",
      "name": "PRINTS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PR\\d{5}$",
      "prefix": "prints",
      "provider_url": "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false&regexpr=off",
      "sampleId": "PR00001"
    },
    "n2t": {
      "description": "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours.",
      "example": "PR00001",
      "homepage": "http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/",
      "name": "PRINTS through SPRINT",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PR\\d{5}$",
      "prefix": "prints",
      "provider_url": "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false&regexpr=off"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/prints/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PRINTS"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "comment": "Replacement for PRINT",
      "formatter": "http://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&prints_accn=%s",
      "identifier": "82",
      "link_is_explicit": "true",
      "name": "Protein Motif fingerprint database; a protein domain database",
      "prefix": "PRINTS"
    }
  },
  "probonto": {
    "mappings": {
      "miriam": "probonto",
      "n2t": "probonto",
      "ols": "probonto",
      "prefixcommons": "PROBONTO"
    },
    "miriam": {
      "deprecated": false,
      "description": "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae.  It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/probonto",
      "id": "00000575",
      "name": "ProbOnto",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PROB_c\\d+$",
      "prefix": "probonto",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form=$1",
      "sampleId": "PROB_c0000005"
    },
    "n2t": {
      "description": "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae.  It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities.",
      "example": "PROB_c0000005",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/probonto",
      "name": "ProbOnto through OLS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PROB_c\\d+$",
      "prefix": "probonto",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form=$1"
    },
    "ols": {
      "contact": "probonto.dev@gmail.com",
      "description": "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than eighty uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulas.",
      "download": "https://raw.githubusercontent.com/probonto/ontology/master/probonto4ols.owl",
      "homepage": "http://probonto.org",
      "name": "Probability Distribution Ontology",
      "prefix": "probonto",
      "version": "2.5.0"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/probonto/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PROBONTO"
    }
  },
  "prodom": {
    "mappings": {
      "miriam": "prodom",
      "n2t": "prodom",
      "prefixcommons": "PRODOM"
    },
    "miriam": {
      "deprecated": false,
      "description": "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.",
      "homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
      "id": "00000117",
      "name": "ProDom",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PD\\d+$",
      "prefix": "prodom",
      "provider_url": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1",
      "sampleId": "PD10000"
    },
    "n2t": {
      "description": "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.",
      "example": "PD10000",
      "homepage": "http://prodom.prabi.fr/prodom/current/html/home.php",
      "name": "ProDom Protein Domain Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PD\\d+$",
      "prefix": "prodom",
      "provider_url": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/prodom/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PRODOM"
    }
  },
  "proglyc": {
    "mappings": {
      "miriam": "proglyc",
      "n2t": "proglyc",
      "prefixcommons": "PROGLYC"
    },
    "miriam": {
      "deprecated": false,
      "description": "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information.",
      "homepage": "http://www.proglycprot.org/",
      "id": "00000354",
      "name": "ProGlycProt",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]C\\d{1,3}$",
      "prefix": "proglyc",
      "provider_url": "http://www.proglycprot.org/detail.aspx?ProId=$1",
      "sampleId": "AC119"
    },
    "n2t": {
      "description": "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information.",
      "example": "AC119",
      "homepage": "http://www.proglycprot.org/",
      "name": "ProGlycProt at IMT",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z]C\\d{1,3}$",
      "prefix": "proglyc",
      "provider_url": "http://www.proglycprot.org/detail.aspx?ProId=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/proglyc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PROGLYC"
    }
  },
  "propreo": {
    "bioportal": {
      "name": "Proteomics Data and Process Provenance Ontology",
      "prefix": "PROPREO"
    },
    "mappings": {
      "bioportal": "PROPREO",
      "obofoundry": "propreo",
      "prefixcommons": "PROPREO"
    },
    "obofoundry": {
      "contact": "satya30@uga.edu",
      "contact.label": "Satya S. Sahoo",
      "deprecated": true,
      "homepage": "http://lsdis.cs.uga.edu/projects/glycomics/propreo/",
      "name": "Proteomics data and process provenance",
      "prefix": "propreo"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PROPREO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PROPREO"
    }
  },
  "prosite": {
    "go": {
      "formatter": "https://prosite.expasy.org/$1",
      "homepage": "https://prosite.expasy.org/",
      "name": "Prosite database of protein families and domains",
      "prefix": "Prosite"
    },
    "mappings": {
      "go": "Prosite",
      "miriam": "prosite",
      "n2t": "prosite",
      "prefixcommons": "PROSITE",
      "uniprot": "PROSITE",
      "uniprot.database": "PROSITE",
      "wikidata": "P4355"
    },
    "miriam": {
      "deprecated": false,
      "description": "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.",
      "homepage": "https://www.expasy.org/prosite/",
      "id": "00000032",
      "name": "PROSITE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PS\\d{5}$",
      "prefix": "prosite",
      "provider_url": "https://prosite.expasy.org/$1",
      "sampleId": "PS00001"
    },
    "n2t": {
      "description": "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.",
      "example": "PS00001",
      "homepage": "https://www.expasy.org/prosite/",
      "name": "ExPASy PROSITE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PS\\d{5}$",
      "prefix": "prosite",
      "provider_url": "https://prosite.expasy.org/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/prosite/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PROSITE"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "https://prosite.expasy.org/doc/%s",
      "identifier": "84",
      "link_is_explicit": "true",
      "name": "PROSITE; a protein domain and family database",
      "prefix": "PROSITE"
    },
    "wikidata": {
      "database": "Q899676",
      "database.homepage": "http://prosite.expasy.org/",
      "database.label": "PROSITE",
      "format": "http://prosite.expasy.org/$1",
      "name": "PROSITE documentation ID",
      "pattern": "PDOC\\d{5}",
      "prefix": "P4355"
    }
  },
  "protclustdb": {
    "mappings": {
      "miriam": "protclustdb",
      "n2t": "protclustdb",
      "prefixcommons": "PROTCLUSTDB"
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    "miriam": {
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      "is_obo": false,
      "prefix": "PUBCHEM.SUBSTANCE"
    },
    "synonyms": [
      "DSSTox_Generic_SID"
    ],
    "wikidata": {
      "database": "Q278487",
      "database.homepage": "http://pubchem.ncbi.nlm.nih.gov",
      "database.label": "PubChem",
      "format": "https://pubchem.ncbi.nlm.nih.gov/substance/$1",
      "format.rdf": "http://rdf.ncbi.nlm.nih.gov/pubchem/substance/SID$1",
      "homepage": "https://www.ncbi.nlm.nih.gov/pcsubstance",
      "name": "PubChem Substance ID (SID)",
      "pattern": "[1-9]\\d*",
      "prefix": "P2153"
    }
  },
  "publons.researcher": {
    "biolink": {
      "formatter": "https://publons.com/researcher/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "ResearchID"
    },
    "mappings": {
      "biolink": "ResearchID"
    },
    "name": "Publons Researcher ID",
    "url": "https://publons.com/researcher/$1"
  },
  "pubmed": {
    "cellosaurus": {
      "category": "Reference resources",
      "homepage": "https://www.ncbi.nlm.nih.gov/pubmed",
      "name": "PubMed",
      "prefix": "PubMed",
      "url": "https://www.ncbi.nlm.nih.gov/pubmed/$1"
    },
    "go": {
      "formatter": "http://www.ncbi.nlm.nih.gov/pubmed/$1",
      "homepage": "https://www.ncbi.nlm.nih.gov/pubmed",
      "name": "PubMed",
      "prefix": "PMID",
      "synonyms": [
        "PUBMED"
      ]
    },
    "mappings": {
      "cellosaurus": "PubMed",
      "go": "PMID",
      "miriam": "pubmed",
      "n2t": "pubmed",
      "prefixcommons": "PMID"
    },
    "miriam": {
      "deprecated": false,
      "description": "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.",
      "homepage": "https://www.ncbi.nlm.nih.gov/PubMed/",
      "id": "00000015",
      "name": "PubMed",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pubmed",
      "provider_url": "https://www.ncbi.nlm.nih.gov/pubmed/$1",
      "sampleId": "16333295"
    },
    "n2t": {
      "description": "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.",
      "example": "16333295",
      "homepage": "https://www.ncbi.nlm.nih.gov/PubMed/",
      "name": "NCBI PubMed",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "pubmed",
      "provider_url": "https://www.ncbi.nlm.nih.gov/pubmed/$1"
    },
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/pubmed/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "PMID"
    },
    "synonyms": [
      "pmid",
      "PMID",
      "MEDLINE"
    ],
    "wikidata": {
      "prefix": "P698"
    }
  },
  "pw": {
    "bioportal": {
      "name": "Pathway Ontology",
      "prefix": "PW"
    },
    "download_obo": "ftp://ftp.rgd.mcw.edu/pub/data_release/ontology_obo_files/pathway/pathway.obo",
    "example": "0000423",
    "mappings": {
      "bioportal": "PW",
      "miriam": "pw",
      "n2t": "pw",
      "obofoundry": "pw",
      "ols": "pw",
      "prefixcommons": "PW"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.",
      "homepage": "http://bioportal.bioontology.org/ontologies/PW",
      "id": "00000242",
      "name": "Pathway Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^PW:\\d{7}$",
      "prefix": "pw",
      "provider_url": "http://purl.bioontology.org/ontology/PW/PW:$1",
      "sampleId": "0000208"
    },
    "n2t": {
      "description": "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.",
      "example": "0000208",
      "homepage": "http://bioportal.bioontology.org/ontologies/PW",
      "name": "Pathway Ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^PW:\\d{7}$",
      "prefix": "pw",
      "provider_url": "http://purl.bioontology.org/ontology/PW/PW:$1"
    },
    "obofoundry": {
      "contact": "gthayman@mcw.edu",
      "contact.label": "G. Thomas Hayman",
      "deprecated": false,
      "description": "A controlled vocabulary for annotating gene products to pathways.",
      "download.obo": "http://purl.obolibrary.org/obo/pw.obo",
      "download.owl": "http://purl.obolibrary.org/obo/pw.owl",
      "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
      "license": "CC-BY",
      "name": "Pathway ontology",
      "prefix": "pw"
    },
    "ols": {
      "description": "A controlled vocabulary for annotating gene products to pathways.",
      "download": "http://purl.obolibrary.org/obo/pw.owl",
      "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
      "name": "Pathway ontology",
      "prefix": "pw",
      "version": "2019-10-23",
      "version.iri": "http://purl.obolibrary.org/obo/pw/7.52/pw.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/PW_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "PW"
    },
    "wikidata": {
      "database": "Q28864280",
      "prefix": "P7333"
    }
  },
  "px": {
    "mappings": {
      "miriam": "px",
      "n2t": "px",
      "prefixcommons": "PX"
    },
    "miriam": {
      "deprecated": false,
      "description": "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination.",
      "homepage": "http://www.proteomexchange.org/",
      "id": "00000513",
      "name": "ProteomeXchange",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(R)?PXD\\d{6}$",
      "prefix": "px",
      "provider_url": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1",
      "sampleId": "PXD000500"
    },
    "n2t": {
      "description": "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination.",
      "example": "PXD000500",
      "homepage": "http://www.proteomexchange.org/",
      "name": "ProteomeXchange at Seattle",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(R)?PXD\\d{6}$",
      "prefix": "px",
      "provider_url": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/px/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "PX"
    }
  },
  "qtldb": {
    "mappings": {
      "miriam": "qtldb"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent.",
      "homepage": "https://www.animalgenome.org/QTLdb",
      "id": "00000798",
      "name": "Animal Genome QTL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "qtldb",
      "provider_url": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1",
      "sampleId": "4685"
    }
  },
  "qudt": {
    "biolink": {
      "formatter": "http://qudt.org/1.1/schema/qudt#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "qud"
    },
    "bioportal": {
      "name": "Quantities, Units, Dimensions, and Types Ontology",
      "prefix": "QUDT"
    },
    "example": "baseDimensionEnumeration",
    "mappings": {
      "biolink": "qud",
      "bioportal": "QUDT"
    },
    "name": "Quantities, Units, Dimensions, and Types Ontology",
    "url": "http://qudt.org/schema/qudt#$1"
  },
  "rapdb.locus": {
    "mappings": {
      "miriam": "rapdb.locus"
    },
    "miriam": {
      "deprecated": false,
      "description": "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB.",
      "homepage": "https://rapdb.dna.affrc.go.jp/",
      "id": "00000702",
      "name": "RAP-DB Locus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Os\\S+g\\d{7}$",
      "prefix": "rapdb.locus",
      "provider_url": "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=$1",
      "sampleId": "Os01g0883800"
    }
  },
  "rapdb.transcript": {
    "mappings": {
      "miriam": "rapdb.transcript"
    },
    "miriam": {
      "deprecated": false,
      "description": "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.",
      "homepage": "https://rapdb.dna.affrc.go.jp/",
      "id": "00000762",
      "name": "RAP-DB Transcript",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Os\\S+t\\d{7}-\\d{2}$",
      "prefix": "rapdb.transcript",
      "provider_url": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1",
      "sampleId": "Os01t0883800-02"
    }
  },
  "rbk": {
    "mappings": {
      "miriam": "rbk",
      "n2t": "rbk",
      "prefixcommons": "RBK"
    },
    "miriam": {
      "deprecated": false,
      "description": "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function.",
      "homepage": "https://www.rebuildingakidney.org/",
      "id": "00000659",
      "name": "Rebuilding a Kidney",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$",
      "prefix": "rbk",
      "provider_url": "https://www.rebuildingakidney.org/id/$1",
      "sampleId": "Q-2958"
    },
    "n2t": {
      "description": "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function.",
      "example": "Q-2958",
      "homepage": "https://www.rebuildingakidney.org/",
      "name": "Rebuilding a Kidney",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$",
      "prefix": "rbk",
      "provider_url": "https://www.rebuildingakidney.org/id/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/rbk/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RBK"
    }
  },
  "rbo": {
    "bioportal": {
      "name": "Radiation Biology Ontology",
      "prefix": "RBO"
    },
    "mappings": {
      "bioportal": "RBO",
      "obofoundry": "rbo",
      "ols": "rbo"
    },
    "obofoundry": {
      "contact": "daniel.c.berrios@nasa.gov",
      "contact.label": "Daniel C. Berrios",
      "deprecated": false,
      "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
      "download.json": "http://purl.obolibrary.org/obo/rbo.json",
      "download.obo": "http://purl.obolibrary.org/obo/rbo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/rbo.owl",
      "homepage": "https://github.com/Radiobiology-Informatics-Consortium/RBO",
      "license": "CC-BY",
      "name": "Radiation Biology Ontology",
      "prefix": "rbo"
    },
    "ols": {
      "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
      "download": "http://purl.obolibrary.org/obo/rbo.owl",
      "homepage": "https://github.com/Radiobiology-Informatics-Consortium/RBO",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "Radiation Biology Ontology",
      "prefix": "rbo",
      "version": "2021-05-21",
      "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2021-05-21/rbo.owl"
    }
  },
  "rcb": {
    "example": "RCB0002",
    "homepage": "https://cell.brc.riken.jp/en/rcb",
    "name": "RIKEN Bioresource Center Cell Bank",
    "pattern": "^RCB\\d+$",
    "url": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1"
  },
  "rdf": {
    "example": "RDF",
    "homepage": "http://www.w3.org/1999/02/22-rdf-syntax-ns",
    "mappings": {
      "prefixcommons": "rdf"
    },
    "name": "Resource Description Framework",
    "prefixcommons": {
      "formatter": "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "rdf"
    },
    "url": "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1"
  },
  "rdfs": {
    "bioportal": {
      "name": "The RDF Schema vocabulary",
      "prefix": "RDFS"
    },
    "example": "label",
    "homepage": "https://www.w3.org/TR/rdf-schema/",
    "mappings": {
      "bioportal": "RDFS",
      "prefixcommons": "rdfs"
    },
    "name": "RDF Schema",
    "prefixcommons": {
      "formatter": "http://www.w3.org/2000/01/rdf-schema#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "rdfs"
    },
    "url": "http://www.w3.org/2000/01/rdf-schema#$1"
  },
  "rdo": {
    "bioportal": {
      "name": "Reusable Biodiversity Ontology",
      "prefix": "RDO"
    },
    "download_obo": "https://ratmine.mcw.edu/ontology/disease/RDO.obo",
    "mappings": {
      "bioportal": "RDO"
    },
    "name": "RGD Disease_Ontology"
  },
  "reactome": {
    "example": "R-BTA-418592",
    "go": {
      "formatter": "https://www.reactome.org/content/detail/$1",
      "homepage": "https://www.reactome.org/",
      "name": "Reactome - a curated knowledgebase of biological pathways",
      "prefix": "Reactome",
      "synonyms": [
        "REACTOME",
        "REAC"
      ]
    },
    "mappings": {
      "go": "Reactome",
      "miriam": "reactome",
      "n2t": "reactome",
      "prefixcommons": "REACT",
      "uniprot": "Reactome",
      "uniprot.database": "Reactome",
      "wikidata": "P3937"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.",
      "homepage": "https://www.reactome.org/",
      "id": "00000018",
      "name": "Reactome",
      "namespaceEmbeddedInLui": false,
      "pattern": "(^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$)|(^REACT_\\d+(\\.\\d+)?$)",
      "prefix": "reactome",
      "provider_url": "https://reactome.org/content/detail/$1",
      "sampleId": "R-HSA-201451"
    },
    "n2t": {
      "description": "The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.",
      "example": "R-HSA-201451",
      "homepage": "https://www.reactome.org/",
      "name": "Reactome, a curated knowledgebase of biological pathways",
      "namespaceEmbeddedInLui": false,
      "pattern": "(^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$)|(^REACT_\\d+(\\.\\d+)?$)",
      "prefix": "reactome",
      "provider_url": "https://reactome.org/content/detail/$1"
    },
    "prefixcommons": {
      "formatter": "http://www.reactome.org/PathwayBrowser/#/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "REACT"
    },
    "synonyms": [
      "RE",
      "REACT"
    ],
    "uniprot": {
      "category": "Enzyme and pathway databases",
      "comment": "Replacement for GK",
      "formatter": "https://www.reactome.org/PathwayBrowser/#%s&FLG=%u",
      "identifier": "88",
      "link_is_explicit": "true",
      "name": "Reactome - a knowledgebase of biological pathways and processes",
      "prefix": "Reactome"
    },
    "wikidata": {
      "database": "Q2134522",
      "database.homepage": "https://reactome.org",
      "database.label": "Reactome",
      "format": "http://identifiers.org/reactome:$1",
      "homepage": "http://www.reactome.org/",
      "name": "Reactome ID",
      "prefix": "P3937"
    }
  },
  "reaxys": {
    "example": "1257009",
    "homepage": "https://www.reaxys.com",
    "name": "Reaxys",
    "synonyms": [
      "Reaxys",
      "Beilstein"
    ],
    "wikidata": {
      "prefix": "P1579"
    }
  },
  "rebase": {
    "go": {
      "formatter": "http://rebase.neb.com/rebase/enz/$1.html",
      "homepage": "http://rebase.neb.com/rebase/rebase.html",
      "name": "REBASE restriction enzyme database",
      "prefix": "REBASE"
    },
    "mappings": {
      "go": "REBASE",
      "miriam": "rebase",
      "n2t": "rebase",
      "prefixcommons": "REBASE",
      "uniprot": "REBASE",
      "uniprot.database": "REBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data.",
      "homepage": "http://rebase.neb.com/rebase/",
      "id": "00000230",
      "name": "REBASE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "rebase",
      "provider_url": "http://rebase.neb.com/rebase/enz/$1.html",
      "sampleId": "101"
    },
    "n2t": {
      "description": "REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data.",
      "example": "101",
      "homepage": "http://rebase.neb.com/rebase/",
      "name": "REBASE at New England Biolabs",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "rebase",
      "provider_url": "http://rebase.neb.com/rebase/enz/$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/rebase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "REBASE"
    },
    "uniprot": {
      "category": "Protein family/group databases",
      "formatter": "http://rebase.neb.com/rebase/enz/%s.html",
      "identifier": "89",
      "link_is_explicit": "true",
      "name": "Restriction enzymes and methylases database",
      "prefix": "REBASE"
    }
  },
  "receptome.family": {
    "example": "5.1",
    "homepage": "http://www.receptome.org",
    "name": "Human Plasma Membrane Receptome Families",
    "url": "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1"
  },
  "refseq": {
    "go": {
      "homepage": "http://www.ncbi.nlm.nih.gov/RefSeq/",
      "name": "RefSeq",
      "prefix": "RefSeq"
    },
    "mappings": {
      "go": "RefSeq",
      "miriam": "refseq",
      "n2t": "refseq",
      "prefixcommons": "RefSeq",
      "uniprot": "RefSeq",
      "uniprot.database": "RefSeq"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.",
      "homepage": "https://www.ncbi.nlm.nih.gov/projects/RefSeq/",
      "id": "00000039",
      "name": "RefSeq",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\\d+)|(NZ\\_[A-Z]{2,4}\\d+))(\\.\\d+)?$",
      "prefix": "refseq",
      "provider_url": "https://www.ncbi.nlm.nih.gov/protein/$1",
      "sampleId": "NP_012345"
    },
    "n2t": {
      "description": "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.",
      "example": "NP_012345",
      "homepage": "https://www.ncbi.nlm.nih.gov/projects/RefSeq/",
      "name": "The NCBI Reference Sequence database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\\d+|(NZ\\_[A-Z]{4}\\d+))(\\.\\d+)?$",
      "prefix": "refseq",
      "provider_url": "https://www.ncbi.nlm.nih.gov/protein/$1"
    },
    "name": "Reference Sequence Collection",
    "prefixcommons": {
      "formatter": "http://www.ncbi.nlm.nih.gov/refseq/?term=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "RefSeq"
    },
    "synonyms": [
      "REFSEQ_PROT"
    ],
    "uniprot": {
      "category": "Sequence databases",
      "formatter": "https://www.ncbi.nlm.nih.gov/protein/%s",
      "identifier": "117",
      "link_is_explicit": "true",
      "name": "NCBI Reference Sequences",
      "prefix": "RefSeq"
    }
  },
  "repeatsdb.protein": {
    "mappings": {
      "miriam": "repeatsdb.protein"
    },
    "miriam": {
      "deprecated": false,
      "description": "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database.",
      "homepage": "https://repeatsdb.org/",
      "id": "00000792",
      "name": "RepeatsDB Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$",
      "prefix": "repeatsdb.protein",
      "provider_url": "https://repeatsdb.org/protein/$1",
      "sampleId": "P29894"
    }
  },
  "repeatsdb.structure": {
    "mappings": {
      "miriam": "repeatsdb.structure"
    },
    "miriam": {
      "deprecated": false,
      "description": "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database.",
      "homepage": "https://repeatsdb.org/",
      "id": "00000764",
      "name": "RepeatsDB Structure",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$",
      "prefix": "repeatsdb.structure",
      "provider_url": "https://repeatsdb.org/structure/$1",
      "sampleId": "2gc4E"
    }
  },
  "reproduceme": {
    "bioportal": {
      "name": "REPRODUCE-ME",
      "prefix": "REPRODUCE-ME"
    },
    "mappings": {
      "bioportal": "REPRODUCE-ME",
      "ols": "reproduceme"
    },
    "ols": {
      "contact": "sheeba.samuel@uni-jena.de",
      "description": "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility.",
      "download": "https://sheeba-samuel.github.io/REPRODUCE-ME/doc/reproduce-me.xml",
      "homepage": "https://w3id.org/reproduceme/research",
      "license": "http://creativecommons.org/licenses/by-nc-sa/2.0/",
      "name": "REPRODUCE-ME Ontology",
      "prefix": "reproduceme",
      "version": "1.1"
    }
  },
  "resid": {
    "go": {
      "formatter": "https://proteininformationresource.org/cgi-bin/resid?id=$1",
      "homepage": "https://proteininformationresource.org/resid/resid.shtml",
      "name": "RESID Database of Protein Modifications",
      "prefix": "RESID"
    },
    "mappings": {
      "go": "RESID",
      "miriam": "resid",
      "n2t": "resid",
      "obofoundry": "resid",
      "prefixcommons": "RESID"
    },
    "miriam": {
      "deprecated": false,
      "description": "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.",
      "homepage": "http://pir0.georgetown.edu/resid/",
      "id": "00000046",
      "name": "RESID",
      "namespaceEmbeddedInLui": false,
      "pattern": "^AA\\d{4}$",
      "prefix": "resid",
      "provider_url": "http://pir0.georgetown.edu/cgi-bin/resid?id=$1",
      "sampleId": "AA0001"
    },
    "n2t": {
      "description": "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.",
      "example": "AA0001",
      "homepage": "http://pir0.georgetown.edu/resid/",
      "name": "RESID at Georgetown University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^AA\\d{4}$",
      "prefix": "resid",
      "provider_url": "http://pir0.georgetown.edu/cgi-bin/resid?id=$1"
    },
    "obofoundry": {
      "contact": "john.garavelli@ebi.ac.uk",
      "contact.label": "John Garavelli",
      "deprecated": true,
      "description": "For the description of covalent bonds in proteins.",
      "homepage": "http://www.ebi.ac.uk/RESID/",
      "name": "Protein covalent bond",
      "prefix": "resid"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/RESID_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "RESID"
    }
  },
  "reto": {
    "bioportal": {
      "name": "Regulation of Transcription Ontology",
      "prefix": "RETO"
    },
    "mappings": {
      "bioportal": "RETO",
      "ols": "reto"
    },
    "ols": {
      "contact": "vladimir.n.mironov@gmail.com",
      "description": "Regulation of Transcription",
      "download": "http://www.bio.ntnu.no/ontology/ReTO/reto.rdf",
      "homepage": "http://www.semantic-systems-biology.org/apo",
      "name": "Regulation of Transcription Ontology",
      "prefix": "reto",
      "version": "2019-09-17"
    }
  },
  "rex": {
    "bioportal": {
      "name": "Physico-Chemical Process",
      "prefix": "REX"
    },
    "download_owl": "http://purl.obolibrary.org/obo/rex.owl",
    "mappings": {
      "bioportal": "REX",
      "obofoundry": "rex",
      "ols": "rex",
      "prefixcommons": "REX"
    },
    "obofoundry": {
      "deprecated": false,
      "description": "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.",
      "download.owl": "http://purl.obolibrary.org/obo/rex.owl",
      "name": "Physico-chemical process",
      "prefix": "rex"
    },
    "ols": {
      "description": "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.",
      "download": "http://purl.obolibrary.org/obo/rex.owl",
      "name": "Physico-chemical process",
      "prefix": "rex",
      "version": "2017-11-19",
      "version.iri": "http://purl.obolibrary.org/obo/rex/releases/2017-11-19/rex.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/REX_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "REX"
    }
  },
  "rexo": {
    "bioportal": {
      "name": "Regulation of Gene Expression Ontolology",
      "prefix": "REXO"
    },
    "mappings": {
      "bioportal": "REXO",
      "ols": "rexo"
    },
    "ols": {
      "contact": "vladimir.n.mironov@gmail.com",
      "description": "Regulation of Gene Expression",
      "download": "http://www.bio.ntnu.no/ontology/ReXO/rexo.rdf",
      "homepage": "http://www.semantic-systems-biology.org/apo",
      "name": "Regulation of Gene Expression Ontology",
      "prefix": "rexo",
      "version": "2019-04-11"
    }
  },
  "rfam": {
    "go": {
      "formatter": "https://rfam.org/family/$1",
      "homepage": "https://rfam.org",
      "name": "Rfam database of RNA families",
      "prefix": "Rfam"
    },
    "mappings": {
      "go": "Rfam",
      "miriam": "rfam",
      "n2t": "rfam",
      "ncbi": "RFAM",
      "prefixcommons": "RFAM"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.",
      "homepage": "https://rfam.xfam.org/",
      "id": "00000409",
      "name": "RFAM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^RF\\d{5}$",
      "prefix": "rfam",
      "provider_url": "https://rfam.xfam.org/family/$1",
      "sampleId": "RF00230"
    },
    "n2t": {
      "description": "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.",
      "example": "RF00230",
      "homepage": "https://rfam.xfam.org/",
      "name": "Rfam at EMBL-EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^RF\\d{5}$",
      "prefix": "rfam",
      "provider_url": "https://rfam.xfam.org/family/$1"
    },
    "ncbi": {
      "example": "RF00230",
      "homepage": "http://www.sanger.ac.uk/Software/Rfam/",
      "name": "RNA families database of alignments and CMs",
      "prefix": "RFAM"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/rfam/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RFAM"
    }
  },
  "rgd": {
    "bioportal": {
      "name": "RRB Group D",
      "prefix": "RGD"
    },
    "cellosaurus": {
      "category": "Organism-specific databases",
      "homepage": "https://rgd.mcw.edu",
      "name": "Rat Genome Database",
      "prefix": "RGD",
      "url": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1"
    },
    "example": "7499841",
    "go": {
      "formatter": "https://rgd.mcw.edu/rgdweb/search/search.html?term=$1",
      "homepage": "https://rgd.mcw.edu/",
      "name": "Rat Genome Database",
      "prefix": "RGD",
      "synonyms": [
        "RAD",
        "RGDID"
      ]
    },
    "mappings": {
      "bioportal": "RGD",
      "cellosaurus": "RGD",
      "go": "RGD",
      "miriam": "rgd",
      "n2t": "rgd",
      "ncbi": "RGD",
      "prefixcommons": "RGD",
      "uniprot": "RGD",
      "uniprot.database": "RGD",
      "wikidata": "P3853"
    },
    "miriam": {
      "deprecated": false,
      "description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.",
      "homepage": "http://rgd.mcw.edu/",
      "id": "00000047",
      "name": "Rat Genome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{4,}$",
      "prefix": "rgd",
      "provider_url": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1",
      "sampleId": "2018"
    },
    "n2t": {
      "description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.",
      "example": "2018",
      "homepage": "http://rgd.mcw.edu/",
      "name": "Rat Genome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{4,}$",
      "prefix": "rgd",
      "provider_url": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1"
    },
    "ncbi": {
      "example": "620528",
      "homepage": "http://rgd.mcw.edu/rgdweb/search/search.html",
      "name": "Rat Genome Database",
      "prefix": "RGD"
    },
    "prefixcommons": {
      "formatter": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "RGD"
    },
    "synonyms": [
      "RGD"
    ],
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=%s",
      "identifier": "91",
      "link_is_explicit": "true",
      "name": "Rat genome database",
      "prefix": "RGD"
    },
    "wikidata": {
      "database": "Q7295410",
      "database.homepage": "http://rgd.mcw.edu",
      "database.label": "Rat genome database",
      "format": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1",
      "homepage": "http://rgd.mcw.edu/",
      "name": "Rat Genome Database ID",
      "prefix": "P3853"
    }
  },
  "rgd.qtl": {
    "mappings": {
      "miriam": "rgd.qtl",
      "n2t": "rgd.qtl",
      "prefixcommons": "RGD.QTL"
    },
    "miriam": {
      "deprecated": false,
      "description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes.",
      "homepage": "http://rgd.mcw.edu/",
      "id": "00000451",
      "name": "Rat Genome Database qTL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "rgd.qtl",
      "provider_url": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1",
      "sampleId": "1354581"
    },
    "n2t": {
      "description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes.",
      "example": "1354581",
      "homepage": "http://rgd.mcw.edu/",
      "name": "Rat Genome Database qTL at Medical College of Wisconsin",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "rgd.qtl",
      "provider_url": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/rgd.qtl/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RGD.QTL"
    }
  },
  "rgd.strain": {
    "mappings": {
      "miriam": "rgd.strain",
      "n2t": "rgd.strain",
      "prefixcommons": "RGD.STRAIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology.",
      "homepage": "http://rgd.mcw.edu/",
      "id": "00000452",
      "name": "Rat Genome Database strain",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "rgd.strain",
      "provider_url": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1",
      "sampleId": "5688061"
    },
    "n2t": {
      "description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology.",
      "example": "5688061",
      "homepage": "http://rgd.mcw.edu/",
      "name": "Rat Genome Database strain at Medical College of Wisconsin",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "rgd.strain",
      "provider_url": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/rgd.strain/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RGD.STRAIN"
    }
  },
  "rhea": {
    "go": {
      "description": "Rhea is a manually annotated database of chemical reactions. All data in Rhea is freely accessible and available for anyone to use.",
      "formatter": "https://www.rhea-db.org/rhea/$1",
      "homepage": "https://www.rhea-db.org",
      "name": "Rhea, the Annotated Reactions Database",
      "prefix": "RHEA"
    },
    "mappings": {
      "go": "RHEA",
      "miriam": "rhea",
      "n2t": "rhea",
      "prefixcommons": "RHEA"
    },
    "miriam": {
      "deprecated": false,
      "description": " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB.",
      "homepage": "https://www.rhea-db.org/",
      "id": "00000082",
      "name": "Rhea",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{5}$",
      "prefix": "rhea",
      "provider_url": "https://registry.identifiers.org/deprecation/resources/MIR:00100113/$1",
      "sampleId": "12345"
    },
    "n2t": {
      "description": "Rhea is a manually annotated reaction database, where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest), providing detailed information about structure, formulae and charge. It is populated with the reactions found in the EC list, IntEnz and ENZYME databases), as well as other biochemical reactions, including those that are often termed \"spontaneous\".",
      "example": "12345",
      "homepage": "https://www.rhea-db.org/",
      "name": "Rhea",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{5}$",
      "prefix": "rhea",
      "provider_url": "https://www.rhea-db.org/reaction?id=$1"
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    "prefixcommons": {
      "formatter": "http://identifiers.org/rhea/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RHEA"
    },
    "synonyms": [
      "RHEA"
    ],
    "wikidata": {
      "database": "Q24265951"
    }
  },
  "ricegap": {
    "mappings": {
      "miriam": "ricegap",
      "n2t": "ricegap",
      "prefixcommons": "RICEGAP"
    },
    "miriam": {
      "deprecated": false,
      "description": "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.",
      "homepage": "http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml",
      "id": "00000358",
      "name": "Rice Genome Annotation Project",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$",
      "prefix": "ricegap",
      "provider_url": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1",
      "sampleId": "LOC_Os02g13300"
    },
    "n2t": {
      "description": "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.",
      "example": "LOC_Os02g13300",
      "homepage": "http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml",
      "name": "Rice Genome Annotation Project at TIGR",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$",
      "prefix": "ricegap",
      "provider_url": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ricegap/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RICEGAP"
    }
  },
  "ricenetdb.compound": {
    "mappings": {
      "miriam": "ricenetdb.compound",
      "n2t": "ricenetdb.compound",
      "prefixcommons": "RICENETDB.COMPOUND"
    },
    "miriam": {
      "deprecated": false,
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "homepage": "http://bis.zju.edu.cn/ricenetdb",
      "id": "00000666",
      "name": "RiceNetDB Compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^OSC\\d{4}$",
      "prefix": "ricenetdb.compound",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1",
      "sampleId": "OSC1416"
    },
    "n2t": {
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "example": "OSC1416",
      "homepage": "http://bis.zju.edu.cn/ricenetdb",
      "name": "RiceNetDB Compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^OSC\\d{4}$",
      "prefix": "ricenetdb.compound",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ricenetdb.compound/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RICENETDB.COMPOUND"
    }
  },
  "ricenetdb.gene": {
    "mappings": {
      "miriam": "ricenetdb.gene",
      "n2t": "ricenetdb.gene",
      "prefixcommons": "RICENETDB.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "homepage": "http://bis.zju.edu.cn/ricenetdb/",
      "id": "00000664",
      "name": "RiceNetDB Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$",
      "prefix": "ricenetdb.gene",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1",
      "sampleId": "LOC_Os01g49190.1"
    },
    "n2t": {
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "example": "LOC_Os01g49190.1",
      "homepage": "http://bis.zju.edu.cn/ricenetdb/",
      "name": "RiceNetDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$",
      "prefix": "ricenetdb.gene",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ricenetdb.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RICENETDB.GENE"
    }
  },
  "ricenetdb.mirna": {
    "mappings": {
      "miriam": "ricenetdb.mirna",
      "n2t": "ricenetdb.mirna",
      "prefixcommons": "RICENETDB.MIRNA"
    },
    "miriam": {
      "deprecated": false,
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "homepage": "http://bis.zju.edu.cn/ricenetdb",
      "id": "00000668",
      "name": "RiceNetDB miRNA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^osa-miR\\d{3,5}[a-z]{0,1}$",
      "prefix": "ricenetdb.mirna",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1",
      "sampleId": "osa-miR446"
    },
    "n2t": {
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "example": "osa-miR446",
      "homepage": "http://bis.zju.edu.cn/ricenetdb",
      "name": "RiceNetDB miRNA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^osa-miR\\d{3,5}[a-z]{0,1}$",
      "prefix": "ricenetdb.mirna",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ricenetdb.miRNA/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RICENETDB.MIRNA"
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    "mappings": {
      "miriam": "ricenetdb.protein",
      "n2t": "ricenetdb.protein",
      "prefixcommons": "RICENETDB.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "homepage": "http://bis.zju.edu.cn/ricenetdb/",
      "id": "00000665",
      "name": "RiceNetDB Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$",
      "prefix": "ricenetdb.protein",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1",
      "sampleId": "LOC_Os01g49190"
    },
    "n2t": {
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "example": "LOC_Os01g49190",
      "homepage": "http://bis.zju.edu.cn/ricenetdb/",
      "name": "RiceNetDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$",
      "prefix": "ricenetdb.protein",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ricenetdb.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RICENETDB.PROTEIN"
    }
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  "ricenetdb.reaction": {
    "mappings": {
      "miriam": "ricenetdb.reaction",
      "n2t": "ricenetdb.reaction",
      "prefixcommons": "RICENETDB.REACTION"
    },
    "miriam": {
      "deprecated": false,
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "homepage": "http://bis.zju.edu.cn/ricenetdb",
      "id": "00000667",
      "name": "RiceNetDB Reaction",
      "namespaceEmbeddedInLui": false,
      "pattern": "^OSR\\d{4}$",
      "prefix": "ricenetdb.reaction",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1",
      "sampleId": "OSR0818"
    },
    "n2t": {
      "description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.",
      "example": "OSR0818",
      "homepage": "http://bis.zju.edu.cn/ricenetdb",
      "name": "RiceNetDB Reaction",
      "namespaceEmbeddedInLui": false,
      "pattern": "^OSR\\d{4}$",
      "prefix": "ricenetdb.reaction",
      "provider_url": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ricenetdb.reaction/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RICENETDB.REACTION"
    }
  },
  "rnacentral": {
    "go": {
      "description": "An international database of ncRNA sequences",
      "formatter": "https://rnacentral.org/rna/$1",
      "homepage": "https://rnacentral.org",
      "name": "RNAcentral",
      "prefix": "RNAcentral"
    },
    "mappings": {
      "go": "RNAcentral",
      "miriam": "rnacentral",
      "n2t": "rnacentral",
      "ncbi": "RNAcentral",
      "prefixcommons": "RNACENTRAL"
    },
    "miriam": {
      "deprecated": false,
      "description": "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.",
      "homepage": "https://rnacentral.org/",
      "id": "00000630",
      "name": "RNAcentral",
      "namespaceEmbeddedInLui": false,
      "pattern": "^URS[0-9A-F]{10}(\\_\\d+)?$",
      "prefix": "rnacentral",
      "provider_url": "https://rnacentral.org/rna/$1",
      "sampleId": "URS0000759CF4"
    },
    "n2t": {
      "description": "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.",
      "example": "URS0000759CF4",
      "homepage": "https://rnacentral.org/",
      "name": "RNAcentral through EMBL-EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^URS[0-9A-F]{10}(\\_\\d+)?$",
      "prefix": "rnacentral",
      "provider_url": "https://rnacentral.org/rna/$1"
    },
    "ncbi": {
      "example": "URS00001B9622_9606",
      "homepage": "http://rnacentral.org",
      "name": "Noncoding RNA Sequence Database",
      "prefix": "RNAcentral"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/rnacentral/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RNACENTRAL"
    },
    "synonyms": [
      "LNCRNADB"
    ]
  },
  "rnamod": {
    "example": "051",
    "homepage": "http://rna.rega.kuleuven.be/rnamods/",
    "name": "The RNA Modification Database",
    "url": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1"
  },
  "rnamods": {
    "go": {
      "formatter": "https://mods.rna.albany.edu/mods/modifications/view/$1",
      "homepage": "https://mods.rna.albany.edu/",
      "name": "RNA Modification Database",
      "prefix": "RNAmods",
      "synonyms": [
        "RNAMDB"
      ]
    },
    "mappings": {
      "go": "RNAmods",
      "miriam": "rnamods",
      "n2t": "rnamods",
      "prefixcommons": "RNAMODS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA.",
      "homepage": "http://rna-mdb.cas.albany.edu/RNAmods/rnaover.htm",
      "id": "00000308",
      "name": "RNA Modification Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{3}$",
      "prefix": "rnamods",
      "provider_url": "http://mods.rna.albany.edu/mods/modifications/view/$1",
      "sampleId": "101"
    },
    "n2t": {
      "description": "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA.",
      "example": "101",
      "homepage": "http://rna-mdb.cas.albany.edu/RNAmods/rnaover.htm",
      "name": "RNA Modification Database at University of Utah",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{3}$",
      "prefix": "rnamods",
      "provider_url": "http://mods.rna.albany.edu/mods/modifications/view/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/rnamods/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RNAMODS"
    }
  },
  "rnao": {
    "bioportal": {
      "name": "RNA Ontology",
      "prefix": "RNAO"
    },
    "example": "0000128",
    "mappings": {
      "bioportal": "RNAO",
      "obofoundry": "rnao",
      "ols": "rnao",
      "prefixcommons": "RNAO"
    },
    "obofoundry": {
      "contact": "BatchelorC@rsc.org",
      "contact.label": "Colin Batchelor",
      "deprecated": false,
      "description": "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.",
      "download.obo": "http://purl.obolibrary.org/obo/rnao.obo",
      "download.owl": "http://purl.obolibrary.org/obo/rnao.owl",
      "homepage": "https://github.com/bgsu-rna/rnao",
      "license": "CC-0",
      "name": "RNA ontology",
      "prefix": "rnao"
    },
    "ols": {
      "description": "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.",
      "download": "http://purl.obolibrary.org/obo/rnao.owl",
      "homepage": "https://github.com/bgsu-rna/rnao",
      "name": "The RNA Ontology (RNAO): An Ontology for Integrating RNA Sequence and Structure Data",
      "prefix": "rnao",
      "version": "2019-04-15"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/RNAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "RNAO"
    }
  },
  "ro": {
    "biolink": {
      "formatter": "http://purl.obolibrary.org/obo/RO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "RO"
    },
    "bioportal": {
      "name": "Radiomics Ontology",
      "prefix": "RO"
    },
    "download_obo": "https://github.com/oborel/obo-relations/raw/master/ro.obo",
    "go": {
      "description": "A collection of relations used across OBO ontologies",
      "name": "OBO Relation Ontology Ontology",
      "prefix": "RO"
    },
    "mappings": {
      "biolink": "RO",
      "bioportal": "RO",
      "go": "RO",
      "miriam": "ro",
      "n2t": "ro",
      "obofoundry": "obo_rel",
      "ols": "ro",
      "prefixcommons": "OBO_REL"
    },
    "miriam": {
      "deprecated": false,
      "description": "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/ro",
      "id": "00000120",
      "name": "Relation Ontology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^RO_\\d{7}$",
      "prefix": "ro",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/ro/terms?short_form=$1",
      "sampleId": "RO_0002533"
    },
    "n2t": {
      "description": "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies.",
      "example": "RO_0002533",
      "homepage": "http://obofoundry.org/ontology/ro.html",
      "name": "OBO Relation Ontology through OntoBee",
      "namespaceEmbeddedInLui": false,
      "pattern": "^RO_\\d{7}$",
      "prefix": "ro",
      "provider_url": "http://purl.obolibrary.org/obo/$1"
    },
    "name": "Relation Ontology",
    "obofoundry": {
      "contact": "cjmungall@lbl.gov",
      "contact.label": "Chris Mungall",
      "deprecated": true,
      "homepage": "http://www.obofoundry.org/ro",
      "name": "OBO relationship types (legacy)",
      "prefix": "obo_rel"
    },
    "ols": {
      "description": "The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies.",
      "download": "http://purl.obolibrary.org/obo/ro.owl",
      "homepage": " https://github.com/oborel/obo-relations/",
      "license": "https://creativecommons.org/publicdomain/zero/1.0/",
      "name": "OBO Relations Ontology",
      "prefix": "ro",
      "version": "2021-06-23",
      "version.iri": "http://purl.obolibrary.org/obo/ro/releases/2021-06-23/ro.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/OBO_REL_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "OBO_REL"
    },
    "synonyms": [
      "obo_rel",
      "RO_proposed_relation"
    ],
    "wikidata": {
      "prefix": "P3590"
    }
  },
  "rouge": {
    "mappings": {
      "miriam": "rouge",
      "n2t": "rouge",
      "prefixcommons": "ROUGE",
      "uniprot": "Rouge",
      "uniprot.database": "Rouge"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.",
      "homepage": "http://www.kazusa.or.jp/rouge/",
      "id": "00000293",
      "name": "Rouge",
      "namespaceEmbeddedInLui": false,
      "pattern": "^m\\w+$",
      "prefix": "rouge",
      "provider_url": "http://www.kazusa.or.jp/rouge/gfpage/$1/",
      "sampleId": "mKIAA4200"
    },
    "n2t": {
      "description": "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.",
      "example": "mKIAA4200",
      "homepage": "http://www.kazusa.or.jp/rouge/",
      "name": "Rouge at Kazusa DNA Research Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^m\\w+$",
      "prefix": "rouge",
      "provider_url": "http://www.kazusa.or.jp/rouge/gfpage/$1/"
    },
    "name": "Rodent Unidentified Gene-Encoded Large Proteins",
    "prefixcommons": {
      "formatter": "http://identifiers.org/rouge/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ROUGE"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "http://www.kazusa.or.jp/rouge/gfpage/%s",
      "identifier": "92",
      "name": "Rodent Unidentified Gene-Encoded large proteins database",
      "prefix": "Rouge"
    }
  },
  "rrid": {
    "mappings": {
      "miriam": "rrid",
      "n2t": "rrid",
      "prefixcommons": "RRID"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\r\nThe initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch.",
      "homepage": "https://scicrunch.org/resolver",
      "id": "00000558",
      "name": "RRID",
      "namespaceEmbeddedInLui": true,
      "pattern": "^RRID:[a-zA-Z]+.+$",
      "prefix": "rrid",
      "provider_url": "https://scicrunch.org/resolver/RRID:$1",
      "sampleId": "AB_262044"
    },
    "n2t": {
      "description": "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools. The initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch.",
      "example": "AB_262044",
      "homepage": "https://scicrunch.org/resolver",
      "name": "RRID at SciCrunch",
      "namespaceEmbeddedInLui": true,
      "pattern": "^RRID:[A-Z_a-z-0-9]+$",
      "prefix": "rrid",
      "provider_url": "https://scicrunch.org/resolver/RRID:$1"
    },
    "name": "Research Resource Identification",
    "prefixcommons": {
      "formatter": "http://identifiers.org/rrid/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "RRID"
    }
  },
  "rs": {
    "bioportal": {
      "name": "Rat Strain Ontology",
      "prefix": "RS"
    },
    "example": "0001807",
    "mappings": {
      "bioportal": "RS",
      "obofoundry": "rs",
      "ols": "rs",
      "prefixcommons": "RS"
    },
    "obofoundry": {
      "contact": "sjwang@mcw.edu",
      "contact.label": "Shur-Jen Wang",
      "deprecated": false,
      "description": "Ontology of rat strains",
      "download.obo": "http://purl.obolibrary.org/obo/rs.obo",
      "download.owl": "http://purl.obolibrary.org/obo/rs.owl",
      "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
      "license": "CC-BY 4.0",
      "name": "Rat Strain Ontology",
      "prefix": "rs"
    },
    "ols": {
      "description": "Ontology of rat strains",
      "download": "http://purl.obolibrary.org/obo/rs.owl",
      "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
      "name": "Rat Strain Ontology",
      "prefix": "rs",
      "version": "2019-12-13",
      "version.iri": "http://purl.obolibrary.org/obo/rs/6.106/rs.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/RS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "RS"
    }
  },
  "runbiosimulations": {
    "mappings": {
      "miriam": "runbiosimulations"
    },
    "miriam": {
      "deprecated": false,
      "description": "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive.",
      "homepage": "https://icahn.mssm.edu/",
      "id": "00000897",
      "name": "runBioSimulations",
      "namespaceEmbeddedInLui": false,
      "pattern": "[0-9a-z]{24,24}",
      "prefix": "runbiosimulations",
      "provider_url": "https://run.biosimulations.org/simulations/$1",
      "sampleId": "5fde96bdc5f1aa9ff0cce18a"
    }
  },
  "rxno": {
    "bioportal": {
      "name": "Name Reaction Ontology",
      "prefix": "RXNO"
    },
    "download_obo": "https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo",
    "example": "0000253",
    "mappings": {
      "bioportal": "RXNO",
      "obofoundry": "rxno",
      "ols": "rxno",
      "prefixcommons": "RXNO"
    },
    "name": "Name Reaction Ontology",
    "obofoundry": {
      "contact": "batchelorc@rsc.org",
      "contact.label": "Colin Batchelor",
      "deprecated": false,
      "description": "Connects organic name reactions to their roles in an organic synthesis and to processes in MOP",
      "download.owl": "http://purl.obolibrary.org/obo/rxno.owl",
      "homepage": "https://github.com/rsc-ontologies/rxno",
      "license": "CC-BY 4.0",
      "name": "Name Reaction Ontology",
      "prefix": "rxno"
    },
    "ols": {
      "contact": "chemistry-ontologies@googlegroups.com",
      "description": "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization.",
      "download": "http://purl.obolibrary.org/obo/rxno.owl",
      "homepage": "https://github.com/rsc-ontologies/rxno",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "RXNO",
      "prefix": "rxno",
      "version": "2021-01-21",
      "version.iri": "http://purl.obolibrary.org/obo/rxno.obo/2021-01-21/rxno.obo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/RXNO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "RXNO"
    },
    "wikidata": {
      "prefix": "P2106"
    }
  },
  "rxnorm": {
    "biolink": {
      "formatter": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "RXCUI"
    },
    "bioportal": {
      "name": "RxNORM",
      "prefix": "RXNORM"
    },
    "example": "221058",
    "mappings": {
      "biolink": "RXCUI",
      "bioportal": "RXNORM",
      "prefixcommons": "RXCUI"
    },
    "name": "RxNorm",
    "pattern": "^[0-9]{1,7}$",
    "prefixcommons": {
      "formatter": "http://purl.bioontology.org/ontology/RXNORM/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "RXCUI"
    },
    "synonyms": [
      "RXCUI"
    ],
    "url": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1",
    "wikidata": {
      "database": "Q7383767",
      "prefix": "P3345"
    }
  },
  "sabiork.compound": {
    "mappings": {
      "miriam": "sabiork.compound",
      "n2t": "sabiork.compound"
    },
    "miriam": {
      "deprecated": false,
      "description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information.",
      "homepage": "http://sabiork.h-its.org/",
      "id": "00000688",
      "name": "SABIO-RK Compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sabiork.compound",
      "provider_url": "http://sabiork.h-its.org/newSearch?q=$1",
      "sampleId": "75"
    },
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      "name": "SABIO-RK EC Record",
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      "name": "SABIO-RK Reaction Kinetics Database - Enzyme Classification (EC)",
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      "deprecated": false,
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      "name": "SABIO-RK Reaction",
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      "description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.",
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    "comment": "spider stuff!",
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      "contact.label": "Stephen Larson",
      "deprecated": true,
      "homepage": "http://ccdb.ucsd.edu/CCDBWebSite/sao.html",
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      "is_obo": true,
      "prefix": "SAO"
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    "references": [
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      "description": "Terms commonly used in Systems Biology, and in particular in computational modeling.",
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      "homepage": "http://www.ebi.ac.uk/sbo/",
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      "name": "Systems Biology Ontology",
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    "ols": {
      "description": "Terms commonly used in Systems Biology, and in particular in computational modeling.",
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      "homepage": "http://www.ebi.ac.uk/sbo/",
      "name": "Systems Biology Ontology",
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      "is_obo": true,
      "prefix": "SBO"
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      "description": "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.",
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      "is_obo": false,
      "prefix": "ScopusID"
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    "example": "56305849200",
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      "description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.",
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  },
  "seed.reaction": {
    "mappings": {
      "miriam": "seed.reaction",
      "n2t": "seed.reaction"
    },
    "miriam": {
      "deprecated": false,
      "description": "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.",
      "homepage": "http://modelseed.org/biochem/reactions/",
      "id": "00000692",
      "name": "SEED Reactions",
      "namespaceEmbeddedInLui": false,
      "pattern": "^rxn\\d+$",
      "prefix": "seed.reaction",
      "provider_url": "http://modelseed.org/biochem/reactions/$1",
      "sampleId": "rxn00001"
    },
    "n2t": {
      "description": "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.",
      "example": "rxn00001",
      "homepage": "http://modelseed.org/biochem/reactions/",
      "name": "SEED Reactions",
      "namespaceEmbeddedInLui": false,
      "pattern": "^rxn\\d+$",
      "prefix": "seed.reaction",
      "provider_url": "http://modelseed.org/biochem/reactions/$1"
    }
  },
  "sep": {
    "bioportal": {
      "name": "Sample Processing and Separation Techniques Ontology",
      "prefix": "SEP"
    },
    "download_obo": "https://raw.githubusercontent.com/HUPO-PSI/gelml/master/CV/sep.obo",
    "homepage": "https://psidev.info/sepcv",
    "mappings": {
      "bioportal": "SEP",
      "obofoundry": "sep",
      "prefixcommons": "SEP"
    },
    "obofoundry": {
      "contact": "psidev-gps-dev@lists.sourceforge.net",
      "contact.label": "SEP developers via the PSI and MSI mailing lists",
      "deprecated": true,
      "description": "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments.",
      "download.owl": "http://purl.obolibrary.org/obo/sep.owl",
      "homepage": "http://psidev.info/index.php?q=node/312",
      "name": "Sample processing and separation techniques",
      "prefix": "sep"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SEP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SEP"
    }
  },
  "sepio": {
    "bioportal": {
      "name": "Scientific Evidence and Provenance Information Ontology",
      "prefix": "SEPIO"
    },
    "mappings": {
      "bioportal": "SEPIO",
      "obofoundry": "sepio",
      "ols": "sepio",
      "prefixcommons": "SEPIO"
    },
    "obofoundry": {
      "contact": "mhb120@gmail.com",
      "contact.label": "Matthew Brush",
      "deprecated": false,
      "description": "An ontology for representing the provenance of scientific claims and the evidence that supports them.",
      "download.owl": "http://purl.obolibrary.org/obo/sepio.owl",
      "homepage": "https://github.com/monarch-initiative/SEPIO-ontology",
      "license": "CC-BY",
      "name": "Scientific Evidence and Provenance Information Ontology",
      "prefix": "sepio"
    },
    "ols": {
      "description": "An ontology for representing the provenance of scientific claims and the evidence that supports them.",
      "download": "http://purl.obolibrary.org/obo/sepio.owl",
      "homepage": "http://ifomis.org/bfo",
      "name": "Scientific Evidence and Provenance Information Ontology",
      "prefix": "sepio",
      "version": "$Revision$",
      "version.iri": "http://purl.obolibrary.org/obo/sepio-v20170929.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SEPIO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SEPIO"
    }
  },
  "sgd": {
    "example": "S000002493",
    "go": {
      "formatter": "https://www.yeastgenome.org/locus/$1",
      "homepage": "http://www.yeastgenome.org/",
      "name": "Saccharomyces Genome Database",
      "prefix": "SGD",
      "synonyms": [
        "SGDID"
      ]
    },
    "mappings": {
      "go": "SGD",
      "miriam": "sgd",
      "n2t": "sgd",
      "ncbi": "SGD",
      "prefixcommons": "SGD",
      "uniprot": "SGD",
      "uniprot.database": "SGD",
      "wikidata": "P3406"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.",
      "homepage": "https://www.yeastgenome.org/",
      "id": "00000023",
      "name": "SGD",
      "namespaceEmbeddedInLui": false,
      "pattern": "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$",
      "prefix": "sgd",
      "provider_url": "https://www.yeastgenome.org/locus/$1",
      "sampleId": "S000003909"
    },
    "n2t": {
      "description": "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.",
      "example": "S000003909",
      "homepage": "https://www.yeastgenome.org/",
      "name": "SGD",
      "namespaceEmbeddedInLui": false,
      "pattern": "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$",
      "prefix": "sgd",
      "provider_url": "https://www.yeastgenome.org/locus/$1"
    },
    "name": "Saccharomyces Genome Database",
    "ncbi": {
      "example": "L0000470",
      "homepage": "http://www.yeastgenome.org/",
      "name": "Saccharomyces Genome Database",
      "prefix": "SGD"
    },
    "prefixcommons": {
      "formatter": "https://www.yeastgenome.org/locus/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "SGD"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://www.yeastgenome.org/locus/%s",
      "identifier": "95",
      "link_is_explicit": "true",
      "name": "Saccharomyces Genome Database",
      "prefix": "SGD"
    },
    "wikidata": {
      "database": "Q3460832",
      "database.homepage": "http://www.yeastgenome.org",
      "database.label": "Saccharomyces Genome Database",
      "format": "http://www.yeastgenome.org/locus/$1/overview",
      "homepage": "http://www.yeastgenome.org",
      "name": "Saccharomyces Genome Database ID",
      "pattern": "S\\d{9}",
      "prefix": "P3406"
    }
  },
  "sgd.pathways": {
    "mappings": {
      "miriam": "sgd.pathways",
      "n2t": "sgd.pathways",
      "prefixcommons": "SGD.PATHWAYS"
    },
    "miriam": {
      "deprecated": false,
      "description": "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).",
      "homepage": "http://pathway.yeastgenome.org/",
      "id": "00000057",
      "name": "Saccharomyces genome database pathways",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PWY\\w{2}\\-\\d{3}$",
      "prefix": "sgd.pathways",
      "provider_url": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1",
      "sampleId": "PWY3O-214"
    },
    "n2t": {
      "description": "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).",
      "example": "PWY3O-214",
      "homepage": "http://pathway.yeastgenome.org/",
      "name": "Saccharomyces cerevisiae pathways at SGD.",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PWY\\w{2}\\-\\d{3}$",
      "prefix": "sgd.pathways",
      "provider_url": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/sgd.pathways/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SGD.PATHWAYS"
    }
  },
  "sgn": {
    "go": {
      "formatter": "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1",
      "homepage": "https://www.sgn.cornell.edu/",
      "name": "Sol Genomics Network",
      "prefix": "SGN",
      "synonyms": [
        "SGN_gene"
      ]
    },
    "mappings": {
      "go": "SGN",
      "miriam": "sgn",
      "n2t": "sgn",
      "ncbi": "SGN",
      "prefixcommons": "SGN"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.",
      "homepage": "http://solgenomics.net/",
      "id": "00000185",
      "name": "Sol Genomics Network",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sgn",
      "provider_url": "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1",
      "sampleId": "0001"
    },
    "n2t": {
      "description": "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.",
      "example": "0001",
      "homepage": "http://solgenomics.net/",
      "name": "Sol Genomics Network at Boyce Thompson Institute for Plant Research",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sgn",
      "provider_url": "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"
    },
    "ncbi": {
      "example": "E553090",
      "homepage": "http://www.sgn.cornell.edu",
      "name": "SOL Genomics Network",
      "prefix": "SGN"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/sgn/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SGN"
    }
  },
  "sheepqtldb": {
    "mappings": {
      "miriam": "sheepqtldb",
      "n2t": "sheepqtldb",
      "prefixcommons": "SHEEPQTLDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.",
      "homepage": "https://www.animalgenome.org/QTLdb",
      "id": "00000507",
      "name": "Animal Genome Sheep QTL",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sheepqtldb",
      "provider_url": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1",
      "sampleId": "19803"
    },
    "n2t": {
      "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.",
      "example": "19803",
      "homepage": "http://www.animalgenome.org/cgi-bin/QTLdb/OA/index",
      "name": "Animal QTL Sheep at Iowa State University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sheepqtldb",
      "provider_url": "http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/sheepqtldb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SHEEPQTLDB"
    }
  },
  "sibo": {
    "bioportal": {
      "name": "Social Inset Behavior Ontology",
      "prefix": "SIBO"
    },
    "example": "0000509",
    "mappings": {
      "bioportal": "SIBO",
      "obofoundry": "sibo",
      "ols": "sibo",
      "prefixcommons": "SIBO"
    },
    "obofoundry": {
      "contact": "cjmungall@lbl.gov",
      "contact.label": "Chris Mungall",
      "deprecated": false,
      "description": "Social Behavior in insects",
      "download.obo": "http://purl.obolibrary.org/obo/sibo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/sibo.owl",
      "homepage": "https://github.com/obophenotype/sibo",
      "license": "CC-BY",
      "name": "Social Insect Behavior Ontology",
      "prefix": "sibo"
    },
    "ols": {
      "description": "Social Behavior in insects",
      "download": "http://purl.obolibrary.org/obo/sibo.owl",
      "homepage": "https://github.com/obophenotype/sibo",
      "name": "Social Insect Behavior Ontology",
      "prefix": "sibo",
      "version": "2015-06-15",
      "version.iri": "http://purl.obolibrary.org/obo/sibo/releases/2015-06-15/sibo.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SIBO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SIBO"
    }
  },
  "sider.drug": {
    "mappings": {
      "miriam": "sider.drug",
      "n2t": "sider.drug",
      "prefixcommons": "SIDER.DRUG"
    },
    "miriam": {
      "deprecated": false,
      "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.",
      "homepage": "http://sideeffects.embl.de/",
      "id": "00000435",
      "name": "SIDER Drug",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sider.drug",
      "provider_url": "http://sideeffects.embl.de/drugs/$1/",
      "sampleId": "2244"
    },
    "n2t": {
      "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.",
      "example": "2244",
      "homepage": "http://sideeffects.embl.de/",
      "name": "SIDER Drug v2 at EMBL (Heidelberg)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sider.drug",
      "provider_url": "http://sideeffects.embl.de/drugs/$1/"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/sider.drug/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SIDER.DRUG"
    }
  },
  "sider.effect": {
    "mappings": {
      "miriam": "sider.effect",
      "n2t": "sider.effect",
      "prefixcommons": "SIDER.EFFECT"
    },
    "miriam": {
      "deprecated": false,
      "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.",
      "homepage": "http://sideeffects.embl.de/",
      "id": "00000436",
      "name": "SIDER Side Effect",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "sider.effect",
      "provider_url": "http://sideeffects.embl.de/se/$1/",
      "sampleId": "C0017565"
    },
    "n2t": {
      "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.",
      "example": "C0017565",
      "homepage": "http://sideeffects.embl.de/",
      "name": "SIDER Side Effect v2 at EMBL (Heidelberg)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "sider.effect",
      "provider_url": "http://sideeffects.embl.de/se/$1/"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/sider.effect/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SIDER.EFFECT"
    }
  },
  "signaling-gateway": {
    "mappings": {
      "miriam": "signaling-gateway",
      "n2t": "signaling-gateway",
      "prefixcommons": "SIGNALING-GATEWAY"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Signaling Gateway provides  information on  mammalian proteins involved in cellular signaling.",
      "homepage": "http://www.signaling-gateway.org/molecule",
      "id": "00000045",
      "name": "Signaling Gateway",
      "namespaceEmbeddedInLui": false,
      "pattern": "A\\d{6}$",
      "prefix": "signaling-gateway",
      "provider_url": "http://www.signaling-gateway.org/molecule/query?afcsid=$1",
      "sampleId": "A001094"
    },
    "n2t": {
      "description": "The Signaling Gateway provides  information on  mammalian proteins involved in cellular signaling.",
      "example": "A001094",
      "homepage": "http://www.signaling-gateway.org/molecule",
      "name": "Signaling Gateway Molecule Pages",
      "namespaceEmbeddedInLui": false,
      "pattern": "A\\d{6}$",
      "prefix": "signaling-gateway",
      "provider_url": "http://www.signaling-gateway.org/molecule/query?afcsid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/signaling-gateway/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SIGNALING-GATEWAY"
    }
  },
  "signor": {
    "example": "SIGNOR-C41",
    "mappings": {
      "miriam": "signor",
      "uniprot": "SIGNOR",
      "uniprot.database": "SIGNOR"
    },
    "miriam": {
      "deprecated": false,
      "description": "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature.",
      "homepage": "https://signor.uniroma2.it/",
      "id": "00000808",
      "name": "SIGNOR",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SIGNOR\\-[A-Z]+\\d+$",
      "prefix": "signor",
      "provider_url": "https://signor.uniroma2.it/relation_result.php?id=$1",
      "sampleId": "SIGNOR-C2"
    },
    "name": "Signaling Network Open Resource",
    "synonyms": [
      "SIGNOR"
    ],
    "uniprot": {
      "category": "Enzyme and pathway databases",
      "formatter": "https://signor.uniroma2.it/relation_result.php?id=%u",
      "identifier": "206",
      "link_is_explicit": "true",
      "name": "SIGNOR Signaling Network Open Resource",
      "prefix": "SIGNOR"
    }
  },
  "signor.relation": {
    "comment": "Currently, you can put a SIGNOR relation ID into the main page search box and it will resolve, but there is not currently a way to resolve them via a URL pattern",
    "description": "Identifiers for relationships between proteins and complexes, along with their type and provenance",
    "example": "SIGNOR-252737",
    "name": "SIGNOR Relation",
    "part_of": "signor",
    "pattern": "^SIGNOR-\\d+$"
  },
  "sio": {
    "biolink": {
      "formatter": "http://semanticscience.org/resource/SIO_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "SIO"
    },
    "bioportal": {
      "name": "Semanticscience Integrated Ontology",
      "prefix": "SIO"
    },
    "mappings": {
      "biolink": "SIO",
      "bioportal": "SIO",
      "ols": "sio",
      "prefixcommons": "SIO"
    },
    "ols": {
      "contact": "sio-ontology@googlegroups.com",
      "description": "The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.",
      "download": "https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio/release/sio-release.owl",
      "homepage": "https://github.com/micheldumontier/semanticscience",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Semanticscience Integrated Ontology",
      "prefix": "sio",
      "version": "1.53",
      "version.iri": "http://semanticscience.org/ontology/sio/v1.53/sio-release.owl"
    },
    "prefixcommons": {
      "formatter": "http://semanticscience.org/resource/SIO_$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "SIO"
    }
  },
  "sisu": {
    "mappings": {
      "miriam": "sisu",
      "n2t": "sisu",
      "prefixcommons": "SISU"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.",
      "homepage": "http://www.sisuproject.fi/",
      "id": "00000624",
      "name": "SISu",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+:[0-9]+$",
      "prefix": "sisu",
      "provider_url": "http://search.sisuproject.fi/#/variant/$1",
      "sampleId": "17:41223048"
    },
    "n2t": {
      "description": "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.",
      "example": "17:41223048",
      "homepage": "http://www.sisuproject.fi/",
      "name": "SISu",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+:[0-9]+$",
      "prefix": "sisu",
      "provider_url": "http://search.sisuproject.fi/#/variant/$1"
    },
    "name": "Sequencing Initiative Suomi",
    "prefixcommons": {
      "formatter": "http://identifiers.org/sisu/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SISU"
    }
  },
  "sitex": {
    "mappings": {
      "miriam": "sitex",
      "n2t": "sitex",
      "prefixcommons": "SITEX"
    },
    "miriam": {
      "deprecated": false,
      "description": "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.",
      "homepage": "http://www-bionet.sscc.ru/sitex/",
      "id": "00000252",
      "name": "SitEx",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sitex",
      "provider_url": "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1",
      "sampleId": "1000"
    },
    "n2t": {
      "description": "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.",
      "example": "1000",
      "homepage": "http://www-bionet.sscc.ru/sitex/",
      "name": "SitEx at Novosibirsk State University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "sitex",
      "provider_url": "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/sitex/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SITEX"
    }
  },
  "skip": {
    "cellosaurus": {
      "category": "Cell line databases/resources",
      "homepage": "https://www.skip.stemcellinformatics.org/en/",
      "name": "Stemcell Knowledge and Information Portal",
      "prefix": "SKIP",
      "url": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1"
    },
    "description": "SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine.",
    "example": "SKIP001214",
    "homepage": "https://skip.stemcellinformatics.org/en/",
    "mappings": {
      "cellosaurus": "SKIP"
    },
    "name": "Stemcell Knowledge and Information Portal",
    "url": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1"
  },
  "skos": {
    "example": "prefLabel",
    "homepage": "https://www.w3.org/2004/02/skos/",
    "mappings": {
      "prefixcommons": "skos"
    },
    "name": "Simple Knowledge Organization System",
    "prefixcommons": {
      "formatter": "https://www.w3.org/TR/skos-reference/#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "skos"
    },
    "url": "http://www.w3.org/2004/02/skos/core#$1"
  },
  "slm": {
    "mappings": {
      "miriam": "slm"
    },
    "miriam": {
      "deprecated": false,
      "description": "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.",
      "homepage": "http://www.swisslipids.org/#/",
      "id": "00000550",
      "name": "SwissLipids",
      "namespaceEmbeddedInLui": true,
      "pattern": "^SLM:\\d+$",
      "prefix": "slm",
      "provider_url": "http://www.swisslipids.org/#/entity/SLM:$1/",
      "sampleId": "000048885"
    }
  },
  "smart": {
    "go": {
      "formatter": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$1",
      "homepage": "http://smart.embl-heidelberg.de/",
      "name": "Simple Modular Architecture Research Tool",
      "prefix": "SMART"
    },
    "mappings": {
      "go": "SMART",
      "miriam": "smart",
      "n2t": "smart",
      "prefixcommons": "SMART",
      "uniprot": "SMART",
      "uniprot.database": "SMART"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.",
      "homepage": "http://smart.embl-heidelberg.de/",
      "id": "00000118",
      "name": "SMART",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SM\\d{5}$",
      "prefix": "smart",
      "provider_url": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1",
      "sampleId": "SM00015"
    },
    "n2t": {
      "description": "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.",
      "example": "SM00015",
      "homepage": "http://smart.embl-heidelberg.de/",
      "name": "SMART (Simple Modular Architecture Research Tool)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SM\\d{5}$",
      "prefix": "smart",
      "provider_url": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/smart/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SMART"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=%s",
      "identifier": "97",
      "link_is_explicit": "true",
      "name": "Simple Modular Architecture Research Tool; a protein domain database",
      "prefix": "SMART"
    }
  },
  "smid": {
    "example": "137",
    "homepage": "https://smid-db.org/",
    "name": "C. elegans Small Molecule Identifier Database",
    "synonyms": [
      "SMID-DB"
    ],
    "url": "https://smid-db.org/smid/$1"
  },
  "smiles": {
    "example": "COc1ccc2c(c1)OC[C@H]1[C@@H]2C2=C(OC1(C)C)C1=C(C(=O)C2=O)[C@H]2c3ccc(OC)cc3OC[C@H]2C(C)(C)O1",
    "name": "Simplified molecular-input line-entry system",
    "wikidata": {
      "prefix": "P233"
    }
  },
  "smpdb": {
    "biolink": {
      "formatter": "http://smpdb.ca/pathways/#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "PathWhiz"
    },
    "example": "SMP0000219",
    "mappings": {
      "biolink": "PathWhiz",
      "miriam": "smpdb",
      "n2t": "smpdb",
      "prefixcommons": "SMPDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.",
      "homepage": "https://smpdb.ca/",
      "id": "00000104",
      "name": "Small Molecule Pathway Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SMP\\d+$",
      "prefix": "smpdb",
      "provider_url": "http://smpdb.ca/view/$1",
      "sampleId": "SMP00001"
    },
    "n2t": {
      "description": "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.",
      "example": "SMP00001",
      "homepage": "http://www.smpdb.ca/pathways",
      "name": "Small Molecule Pathway Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^SMP\\d+$",
      "prefix": "smpdb",
      "provider_url": "http://smpdb.ca/view/$1"
    },
    "name": "Small Molecule Pathway Database",
    "pattern": "^SMP\\d+$",
    "prefixcommons": {
      "formatter": "http://smpdb.ca/view/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "SMPDB"
    },
    "synonyms": [
      "SMP"
    ],
    "url": "https://smpdb.ca/view/$1"
  },
  "snap": {
    "name": "Snapshot",
    "references": [
      "http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf"
    ]
  },
  "snomedct": {
    "bioportal": {
      "name": "SNOMED CT",
      "prefix": "SNOMEDCT"
    },
    "mappings": {
      "bioportal": "SNOMEDCT",
      "miriam": "snomedct",
      "n2t": "snomedct",
      "prefixcommons": "SNOMED"
    },
    "miriam": {
      "deprecated": false,
      "description": "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.",
      "homepage": "http://www.snomedbrowser.com/",
      "id": "00000269",
      "name": "SNOMED CT",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(\\w+)?\\d+$",
      "prefix": "snomedct",
      "provider_url": "http://www.snomedbrowser.com/Codes/Details/$1",
      "sampleId": "284196006"
    },
    "n2t": {
      "description": "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.",
      "example": "284196006",
      "homepage": "http://www.snomedbrowser.com/",
      "name": "SNOMED-CT at The National Pathology Exchange",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(\\w+)?\\d+$",
      "prefix": "snomedct",
      "provider_url": "http://www.snomedbrowser.com/Codes/Details/$1"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SNOMED_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SNOMED"
    },
    "synonyms": [
      "SNOMED",
      "SNOMECT",
      "SNOMEDCT",
      "SNOMED_CT",
      "SNOMEDCTCT",
      "SCTID",
      "SNOWMEDCT_US",
      "SNOWMEDCT",
      "SNOMEDCT_US",
      "SCTID_2010_1_31",
      "SNOMEDCT_2010_1_31",
      "SNOWMEDCT_US_2018_03_01",
      "SNOMEDCT_US_2018_03_01",
      "SNOMED_CT_US_2018_03_01",
      "SNOMEDCT_US_2018_09_01",
      "SNOMEDCTCT_2018_03_01",
      "SNOMEDCT_US_2019_03_01",
      "SNOMEDCTCT_2019_03_01",
      "SNOMEDCT_US_2019_09_01",
      "SNOMEDCT_US_2020_03_01",
      "SNOMEDCT_US_2020_09_01"
    ],
    "wikidata": {
      "database": "Q1753883",
      "database.label": "SNOMED CT",
      "format": "http://snomed.info/id/$1",
      "homepage": "http://snomed.info/",
      "name": "SNOMED CT identifier",
      "pattern": "^[0-9]*$",
      "prefix": "P5806"
    }
  },
  "snornabase": {
    "description": "A comprehensive database of\n\nhuman H/ACA and C/D box snoRNAs.",
    "homepage": "https://www-snorna.biotoul.fr/",
    "name": "snoRNABase",
    "wikidata": {
      "paper": "Q24675417"
    }
  },
  "snp2tfbs": {
    "mappings": {
      "miriam": "snp2tfbs"
    },
    "miriam": {
      "deprecated": false,
      "description": "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome.",
      "homepage": "https://ccg.epfl.ch/snp2tfbs/",
      "id": "00000766",
      "name": "SNP2TFBS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^rs[0-9]+$",
      "prefix": "snp2tfbs",
      "provider_url": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1",
      "sampleId": "rs11603840"
    },
    "name": "SNP to Transcription Factor Binding Sites"
  },
  "so": {
    "bioportal": {
      "name": "Sequence Types and Features Ontology",
      "prefix": "SO"
    },
    "download_obo": "https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo",
    "example": "0001157",
    "go": {
      "homepage": "http://www.sequenceontology.org/",
      "name": "Sequence Ontology",
      "prefix": "SO"
    },
    "mappings": {
      "bioportal": "SO",
      "go": "SO",
      "miriam": "so",
      "n2t": "so",
      "obofoundry": "so",
      "ols": "so",
      "prefixcommons": "SO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/so",
      "id": "00000081",
      "name": "Sequence Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^SO:\\d{7}$",
      "prefix": "so",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/so/terms?obo_id=SO:$1",
      "sampleId": "0000704"
    },
    "n2t": {
      "description": "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.",
      "example": "0000704",
      "homepage": "http://bioportal.bioontology.org/ontologies/SO",
      "name": "Sequence Ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^SO:\\d{7}$",
      "prefix": "so",
      "provider_url": "http://purl.bioontology.org/ontology/SO/SO:$1"
    },
    "obofoundry": {
      "contact": "keilbeck@genetics.utah.edu",
      "contact.label": "Karen Eilbeck",
      "deprecated": false,
      "description": "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.",
      "download.obo": "http://purl.obolibrary.org/obo/so.obo",
      "download.owl": "http://purl.obolibrary.org/obo/so.owl",
      "homepage": "https://github.com/The-Sequence-Ontology/SO-Ontologies",
      "license": "CC-BY 4.0",
      "name": "Sequence types and features ontology",
      "prefix": "so"
    },
    "ols": {
      "description": "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.",
      "download": "http://purl.obolibrary.org/obo/so.owl",
      "homepage": "https://github.com/The-Sequence-Ontology/SO-Ontologies",
      "name": "Sequence types and features ontology",
      "prefix": "so",
      "version": "2021-07-12",
      "version.iri": "http://purl.obolibrary.org/obo/so/2021-07-12/so.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SO"
    }
  },
  "sopharm": {
    "bioportal": {
      "name": "Suggested Ontology for Pharmacogenomics",
      "prefix": "SOPHARM"
    },
    "mappings": {
      "bioportal": "SOPHARM",
      "obofoundry": "sopharm",
      "prefixcommons": "SOPHARM"
    },
    "obofoundry": {
      "contact": "Adrien.Coulet@loria.fr",
      "contact.label": "Adrien Coulet",
      "deprecated": true,
      "homepage": "http://www.loria.fr/~coulet/sopharm2.0_description.php",
      "name": "Suggested Ontology for Pharmacogenomics",
      "prefix": "sopharm"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SOPHARM_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SOPHARM"
    }
  },
  "soybase": {
    "mappings": {
      "miriam": "soybase",
      "n2t": "soybase",
      "ncbi": "SoyBase",
      "prefixcommons": "SOYBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "SoyBase is a repository for curated genetics, genomics and related data resources for soybean.",
      "homepage": "http://soybase.org/",
      "id": "00000291",
      "name": "SoyBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\-)?\\w+(\\-)?\\w+$",
      "prefix": "soybase",
      "provider_url": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1",
      "sampleId": "BARC-013845-01256"
    },
    "n2t": {
      "description": "SoyBase is a repository for curated genetics, genomics and related data resources for soybean.",
      "example": "BARC-013845-01256",
      "homepage": "http://soybase.org/",
      "name": "SoyBase at Iowa State University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\-)?\\w+(\\-)?\\w+$",
      "prefix": "soybase",
      "provider_url": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"
    },
    "ncbi": {
      "example": "Satt005",
      "homepage": "http://soybase.org",
      "name": "Glycine max Genome Database",
      "prefix": "SoyBase"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/soybase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SOYBASE"
    }
  },
  "span": {
    "comment": "see also snap",
    "name": "Span"
  },
  "spd": {
    "bioportal": {
      "name": "Spider Anatomy Ontology",
      "prefix": "SPD"
    },
    "example": "0000001",
    "mappings": {
      "bioportal": "SPD",
      "obofoundry": "spd",
      "ols": "spd",
      "prefixcommons": "SPD"
    },
    "obofoundry": {
      "contact": "ramirez@macn.gov.ar",
      "contact.label": "Martin Ramirez",
      "deprecated": false,
      "description": "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).",
      "download.owl": "http://purl.obolibrary.org/obo/spd.owl",
      "homepage": "http://research.amnh.org/atol/files/",
      "license": "CC-BY 3.0",
      "name": "Spider Ontology",
      "prefix": "spd"
    },
    "ols": {
      "description": "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).",
      "download": "http://purl.obolibrary.org/obo/spd.owl",
      "homepage": "http://research.amnh.org/atol/files/",
      "name": "Spider Ontology",
      "prefix": "spd",
      "version": "2019-02-27",
      "version.iri": "http://purl.obolibrary.org/obo/spd/1.0/spd.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SPD_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SPD"
    },
    "wikidata": {
      "prefix": "P4537"
    }
  },
  "spdx": {
    "homepage": "https://spdx.org/licenses",
    "mappings": {
      "miriam": "spdx",
      "n2t": "spdx"
    },
    "miriam": {
      "deprecated": false,
      "description": "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.",
      "homepage": "https://spdx.org",
      "id": "00000687",
      "name": "SPDX License List",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9A-Za-z\\-.]+$",
      "prefix": "spdx",
      "provider_url": "https://spdx.org/licenses/$1",
      "sampleId": "CC-BY-1.0"
    },
    "n2t": {
      "description": "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.",
      "example": "CC-BY-1.0",
      "homepage": "https://spdx.org",
      "name": "SPDX License List",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9A-Za-z\\-.]+$",
      "prefix": "spdx",
      "provider_url": "https://spdx.org/licenses/$1"
    },
    "name": "Software Package Data Exchange License"
  },
  "spike.map": {
    "mappings": {
      "miriam": "spike.map",
      "n2t": "spike.map",
      "prefixcommons": "SPIKE.MAP"
    },
    "miriam": {
      "deprecated": false,
      "description": "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.",
      "homepage": "http://www.cs.tau.ac.il/~spike/",
      "id": "00000321",
      "name": "SPIKE Map",
      "namespaceEmbeddedInLui": false,
      "pattern": "^spike\\d{5}$",
      "prefix": "spike.map",
      "provider_url": "http://www.cs.tau.ac.il/~spike/maps/$1.html",
      "sampleId": "spike00001"
    },
    "n2t": {
      "description": "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.",
      "example": "spike00001",
      "homepage": "http://www.cs.tau.ac.il/~spike/",
      "name": "SPIKE database at Tel Aviv University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^spike\\d{5}$",
      "prefix": "spike.map",
      "provider_url": "http://www.cs.tau.ac.il/~spike/maps/$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/spike.map/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SPIKE.MAP"
    }
  },
  "splash": {
    "mappings": {
      "miriam": "splash",
      "n2t": "splash",
      "prefixcommons": "SPLASH"
    },
    "miriam": {
      "deprecated": false,
      "description": "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance.",
      "homepage": "http://mona.fiehnlab.ucdavis.edu/",
      "id": "00000566",
      "name": "SPLASH",
      "namespaceEmbeddedInLui": false,
      "pattern": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$",
      "prefix": "splash",
      "provider_url": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1",
      "sampleId": "splash10-0zq2000000-77302b0326a418630a84"
    },
    "n2t": {
      "description": "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance.",
      "example": "splash10-0zq2000000-77302b0326a418630a84",
      "homepage": "http://mona.fiehnlab.ucdavis.edu/",
      "name": "Mass Bank of North America (MoNA)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$",
      "prefix": "splash",
      "provider_url": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1"
    },
    "name": "Spectra Hash Code",
    "prefixcommons": {
      "formatter": "http://identifiers.org/splash/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SPLASH"
    }
  },
  "spp": {
    "mappings": {
      "miriam": "spp"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways.",
      "homepage": "https://www.signalingpathways.org/index.jsf",
      "id": "00000726",
      "name": "Signaling Pathways Project",
      "namespaceEmbeddedInLui": false,
      "pattern": "^10.\\w{4}/\\w{10}$",
      "prefix": "spp",
      "provider_url": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1",
      "sampleId": "10.1621/vwN2g2HaX3"
    }
  },
  "srao": {
    "mappings": {
      "ols": "srao"
    },
    "name": "FAIRsharing Subject Ontology",
    "ols": {
      "contact": "contact@fairsharing.org",
      "description": "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.",
      "download": "https://github.com/FAIRsharing/subject-ontology/raw/master/releases/SRAO.owl",
      "homepage": "https://github.com/FAIRsharing/subject-ontology",
      "name": "FAIRsharing Subject Ontology (SRAO)",
      "prefix": "srao",
      "version.iri": "http://www.fairsharing.org/ontology/subject/SRAO.owl/0.2.2"
    }
  },
  "ssbd.dataset": {
    "example": "1",
    "homepage": "https://ssbd.riken.jp",
    "mappings": {
      "fairsharing": "FAIRsharing.we2r5a"
    },
    "name": "System Science of Biological Dynamics dataset",
    "url": "https://ssbd.riken.jp/database/dataset/$1"
  },
  "ssbd.project": {
    "example": "1",
    "homepage": "https://ssbd.riken.jp",
    "name": "System Science of Biological Dynamics project",
    "url": "https://ssbd.riken.jp/database/project/$1"
  },
  "stap": {
    "mappings": {
      "miriam": "stap",
      "n2t": "stap",
      "prefixcommons": "STAP"
    },
    "miriam": {
      "deprecated": false,
      "description": "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).",
      "homepage": "http://psb.kobic.re.kr/STAP/refinement/",
      "id": "00000399",
      "name": "STAP",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}$",
      "prefix": "stap",
      "provider_url": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1",
      "sampleId": "1a24"
    },
    "n2t": {
      "description": "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).",
      "example": "1a24",
      "homepage": "http://psb.kobic.re.kr/STAP/refinement/",
      "name": "STAP at Korean Bioinformation Center",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9][A-Za-z0-9]{3}$",
      "prefix": "stap",
      "provider_url": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"
    },
    "name": "Statistical Torsional Angles Potentials",
    "prefixcommons": {
      "formatter": "http://identifiers.org/stap/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "STAP"
    }
  },
  "stato": {
    "bioportal": {
      "name": "Statistics Ontology",
      "prefix": "STATO"
    },
    "mappings": {
      "bioportal": "STATO",
      "obofoundry": "stato",
      "ols": "stato",
      "prefixcommons": "STATO"
    },
    "obofoundry": {
      "contact": "alejandra.gonzalez.beltran@gmail.com",
      "contact.label": "Alejandra Gonzalez-Beltran",
      "deprecated": false,
      "description": "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.",
      "download.owl": "http://purl.obolibrary.org/obo/stato.owl",
      "homepage": "http://stato-ontology.org/",
      "license": "CC-BY",
      "name": "The Statistical Methods Ontology",
      "prefix": "stato"
    },
    "ols": {
      "contact": "stat-ontology@googlegroups.com",
      "description": "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.",
      "download": "http://purl.obolibrary.org/obo/stato.owl",
      "homepage": "http://stato-ontology.org/",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "STATO: the statistical methods ontology",
      "prefix": "stato",
      "version": "RC1.4"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/STATO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "STATO"
    }
  },
  "stitch": {
    "mappings": {
      "miriam": "stitch",
      "n2t": "stitch",
      "prefixcommons": "STITCH"
    },
    "miriam": {
      "deprecated": false,
      "description": "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.",
      "homepage": "http://stitch.embl.de/",
      "id": "00000266",
      "name": "STITCH",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{14}$",
      "prefix": "stitch",
      "provider_url": "http://stitch.embl.de/interactions/$1",
      "sampleId": "BQJCRHHNABKAKU"
    },
    "n2t": {
      "description": "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.",
      "example": "BQJCRHHNABKAKU",
      "homepage": "http://stitch.embl.de/",
      "name": "STITCH",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{14}$",
      "prefix": "stitch",
      "provider_url": "http://stitch.embl.de/interactions/$1"
    },
    "name": "Search Tool for Interactions of Chemicals",
    "prefixcommons": {
      "formatter": "http://identifiers.org/stitch/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "STITCH"
    }
  },
  "storedb": {
    "mappings": {
      "miriam": "storedb",
      "n2t": "storedb",
      "prefixcommons": "STOREDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.",
      "homepage": "https://www.storedb.org/",
      "id": "00000577",
      "name": "STOREDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^STOREDB:(STUDY|FILE|DATASET)\\d+$",
      "prefix": "storedb",
      "provider_url": "https://www.storedb.org/?$1",
      "sampleId": "STOREDB:STUDY1040"
    },
    "n2t": {
      "description": "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.",
      "example": "STOREDB:STUDY1040",
      "homepage": "https://www.storedb.org/",
      "name": "STOREDB at University of Cambridge",
      "namespaceEmbeddedInLui": false,
      "pattern": "^STOREDB:(STUDY|FILE|DATASET)\\d+$",
      "prefix": "storedb",
      "provider_url": "https://www.storedb.org/?$1"
    },
    "name": "Store DB",
    "prefixcommons": {
      "formatter": "http://identifiers.org/storedb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "STOREDB"
    }
  },
  "string": {
    "mappings": {
      "miriam": "string",
      "n2t": "string",
      "prefixcommons": "STRING",
      "uniprot": "STRING",
      "uniprot.database": "STRING"
    },
    "miriam": {
      "deprecated": false,
      "description": "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.",
      "homepage": "http://string-db.org/",
      "id": "00000265",
      "name": "STRING",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$",
      "prefix": "string",
      "provider_url": "http://string-db.org/interactions/$1",
      "sampleId": "P53350"
    },
    "n2t": {
      "description": "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.",
      "example": "P53350",
      "homepage": "http://string-db.org/",
      "name": "STRING Mirror at Heidelberg",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$",
      "prefix": "string",
      "provider_url": "http://string-db.org/interactions/$1"
    },
    "name": "Search Tool for Retrieval of Interacting Genes/Proteins",
    "prefixcommons": {
      "formatter": "http://identifiers.org/string/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "STRING"
    },
    "uniprot": {
      "category": "Protein-protein interaction databases",
      "formatter": "https://string-db.org/network/%s",
      "identifier": "141",
      "link_is_explicit": "true",
      "name": "STRING: functional protein association networks",
      "prefix": "STRING"
    }
  },
  "sty": {
    "bioportal": {
      "name": "Semantic Types Ontology",
      "prefix": "STY"
    },
    "description": "UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types.",
    "example": "T039",
    "homepage": "https://lhncbc.nlm.nih.gov/semanticnetwork/",
    "mappings": {
      "bioportal": "STY"
    },
    "name": "Semantic Types Ontology",
    "pattern": "^T\\d{3}$",
    "url": "http://purl.bioontology.org/ontology/STY/$1"
  },
  "subtilist": {
    "mappings": {
      "miriam": "subtilist",
      "n2t": "subtilist",
      "ncbi": "SubtiList",
      "prefixcommons": "SUBTILIST"
    },
    "miriam": {
      "deprecated": false,
      "description": "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.",
      "homepage": "http://genolist.pasteur.fr/SubtiList/",
      "id": "00000433",
      "name": "SubtiList",
      "namespaceEmbeddedInLui": false,
      "pattern": "^BG\\d+$",
      "prefix": "subtilist",
      "provider_url": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1",
      "sampleId": "BG11523"
    },
    "n2t": {
      "description": "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria. SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.",
      "example": "BG11523",
      "homepage": "http://genolist.pasteur.fr/SubtiList/",
      "name": "SubtiList at Pasteur Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^BG\\d+$",
      "prefix": "subtilist",
      "provider_url": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1"
    },
    "ncbi": {
      "example": "BG10001",
      "homepage": "http://genolist.pasteur.fr/SubtiList/",
      "name": "Bacillus subtilis genome sequencing project",
      "prefix": "SubtiList"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/subtilist/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SUBTILIST"
    }
  },
  "subtiwiki": {
    "mappings": {
      "miriam": "subtiwiki",
      "n2t": "subtiwiki",
      "prefixcommons": "SUBTIWIKI"
    },
    "miriam": {
      "deprecated": false,
      "description": "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \r\nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon.",
      "homepage": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page",
      "id": "00000132",
      "name": "SubtiWiki",
      "namespaceEmbeddedInLui": false,
      "pattern": "^BSU\\d{5}$",
      "prefix": "subtiwiki",
      "provider_url": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1",
      "sampleId": "BSU29180"
    },
    "n2t": {
      "description": "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein.  Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon.",
      "example": "BSU29180",
      "homepage": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page",
      "name": "SubtiWiki website",
      "namespaceEmbeddedInLui": false,
      "pattern": "^BSU\\d{5}$",
      "prefix": "subtiwiki",
      "provider_url": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/subtiwiki/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SUBTIWIKI"
    }
  },
  "sugarbind": {
    "mappings": {
      "miriam": "sugarbind",
      "n2t": "sugarbind",
      "prefixcommons": "SUGARBIND"
    },
    "miriam": {
      "deprecated": false,
      "description": "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.",
      "homepage": "http://sugarbind.expasy.org/",
      "id": "00000629",
      "name": "SugarBind",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z]+\\/[0-9]+$",
      "prefix": "sugarbind",
      "provider_url": "http://sugarbind.expasy.org/$1",
      "sampleId": "lectins/172"
    },
    "n2t": {
      "description": "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.",
      "example": "lectins/172",
      "homepage": "http://sugarbind.expasy.org/",
      "name": "SugarBind",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z]+\\/[0-9]+$",
      "prefix": "sugarbind",
      "provider_url": "http://sugarbind.expasy.org/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/sugarbind/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SUGARBIND"
    }
  },
  "supfam": {
    "mappings": {
      "miriam": "supfam",
      "n2t": "supfam",
      "prefixcommons": "SUPFAM",
      "uniprot": "SUPFAM",
      "uniprot.database": "SUPFAM"
    },
    "miriam": {
      "deprecated": false,
      "description": "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.",
      "homepage": "http://supfam.org/SUPERFAMILY/",
      "id": "00000357",
      "name": "SUPFAM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "supfam",
      "provider_url": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1",
      "sampleId": "SSF57615"
    },
    "n2t": {
      "description": "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.",
      "example": "SSF57615",
      "homepage": "http://supfam.org/SUPERFAMILY/",
      "name": "SUPFAM at MRC and University of Bristol",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "supfam",
      "provider_url": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1"
    },
    "name": "SUPERFAMILY",
    "prefixcommons": {
      "formatter": "http://identifiers.org/supfam/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SUPFAM"
    },
    "uniprot": {
      "category": "Family and domain databases",
      "formatter": "https://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=%s",
      "identifier": "155",
      "link_is_explicit": "true",
      "name": "Superfamily database of structural and functional annotation",
      "prefix": "SUPFAM"
    }
  },
  "swh": {
    "banana": "swh",
    "mappings": {
      "miriam": "swh",
      "n2t": "swh",
      "prefixcommons": "SWH"
    },
    "miriam": {
      "deprecated": false,
      "description": "Software Heritage is the universal archive of software source code.",
      "homepage": "https://archive.softwareheritage.org",
      "id": "00000655",
      "name": "Software Heritage",
      "namespaceEmbeddedInLui": true,
      "pattern": "^swh:[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$",
      "prefix": "swh",
      "provider_url": "https://archive.softwareheritage.org/browse/swh:$1",
      "sampleId": "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d"
    },
    "n2t": {
      "description": "Software Heritage is the universal archive of software source code.",
      "example": "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d",
      "homepage": "https://archive.softwareheritage.org",
      "name": "Software Heritage",
      "namespaceEmbeddedInLui": true,
      "pattern": "^swh:[1-9]:[a-z][a-z][a-z]:[a-f0-9]+$",
      "prefix": "swh",
      "provider_url": "https://archive.softwareheritage.org/browse/swh:$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/swh/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SWH"
    }
  },
  "swiss-model": {
    "mappings": {
      "miriam": "swiss-model",
      "n2t": "swiss-model",
      "prefixcommons": "SWISS-MODEL"
    },
    "miriam": {
      "deprecated": false,
      "description": "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.",
      "homepage": "https://swissmodel.expasy.org",
      "id": "00000231",
      "name": "SWISS-MODEL Repository",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "swiss-model",
      "provider_url": "https://swissmodel.expasy.org/repository/uniprot/$1",
      "sampleId": "P23298"
    },
    "n2t": {
      "description": "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.",
      "example": "P23298",
      "homepage": "https://swissmodel.expasy.org",
      "name": "SWISS-MODEL at SIB Swiss Institute of Bioinformatics",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "swiss-model",
      "provider_url": "https://swissmodel.expasy.org/repository/uniprot/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/swiss-model/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SWISS-MODEL"
    }
  },
  "swisslipid": {
    "example": "SLM:000000341",
    "mappings": {
      "n2t": "swisslipid",
      "prefixcommons": "SWISSLIPID",
      "wikidata": "P8691"
    },
    "n2t": {
      "description": "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.",
      "example": "000048885",
      "homepage": "http://www.swisslipids.org/#/",
      "name": "SwissLipids at Swiss Institute of Bioinformatics",
      "namespaceEmbeddedInLui": true,
      "pattern": "^SLM:\\d+$",
      "prefix": "swisslipid",
      "provider_url": "http://www.swisslipids.org/#/entity/SLM:$1/"
    },
    "name": "SwissLipid",
    "prefixcommons": {
      "formatter": "http://identifiers.org/swisslipid/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SWISSLIPID"
    },
    "url": "https://www.swisslipids.org/#/entity/$1",
    "wikidata": {
      "database": "Q41165322",
      "database.homepage": "http://www.swisslipids.org/",
      "database.label": "SwissLipids",
      "format": "https://www.swisslipids.org/#/entity/$1/",
      "homepage": "https://www.swisslipids.org/#/",
      "name": "SwissLipids identifier",
      "prefix": "P8691"
    }
  },
  "swissregulon": {
    "mappings": {
      "miriam": "swissregulon",
      "n2t": "swissregulon",
      "prefixcommons": "SWISSREGULON"
    },
    "miriam": {
      "deprecated": false,
      "description": "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.",
      "homepage": "http://swissregulon.unibas.ch",
      "id": "00000632",
      "name": "SwissRegulon",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "swissregulon",
      "provider_url": "http://swissregulon.unibas.ch/query/$1",
      "sampleId": "AHR"
    },
    "n2t": {
      "description": "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.",
      "example": "AHR",
      "homepage": "http://swissregulon.unibas.ch",
      "name": "SwissRegulon",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9]+$",
      "prefix": "swissregulon",
      "provider_url": "http://swissregulon.unibas.ch/query/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/swissregulon/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "SWISSREGULON"
    }
  },
  "swo": {
    "bioportal": {
      "name": "Software Ontology",
      "prefix": "SWO"
    },
    "download_owl": "https://github.com/allysonlister/swo/raw/master/release/swo.owl",
    "example": "0000144",
    "mappings": {
      "bioportal": "SWO",
      "obofoundry": "swo",
      "ols": "swo",
      "prefixcommons": "SWO"
    },
    "obofoundry": {
      "contact": "allyson.lister@oerc.ox.ac.uk",
      "contact.label": "Allyson Lister",
      "deprecated": false,
      "description": "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.",
      "download.owl": "http://purl.obolibrary.org/obo/swo.owl",
      "homepage": "https://github.com/allysonlister/swo",
      "license": "CC BY 4.0",
      "name": "Software ontology",
      "prefix": "swo"
    },
    "ols": {
      "description": "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.",
      "download": "http://purl.obolibrary.org/obo/swo.owl",
      "homepage": "https://github.com/allysonlister/swo",
      "license": "SWO is provided under a Creative Commons Attribution 4.0 International (CC BY 4.0) license (https://creativecommons.org/licenses/by/4.0/).",
      "name": "SWO (The Software Ontology)",
      "prefix": "swo",
      "version": "1.7",
      "version.iri": "http://www.ebi.ac.uk/swo/swo.owl/1.7"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SWO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SWO"
    }
  },
  "symp": {
    "bioportal": {
      "name": "Symptom Ontology",
      "prefix": "SYMP"
    },
    "example": "0019171",
    "mappings": {
      "bioportal": "SYMP",
      "obofoundry": "symp",
      "ols": "symp",
      "prefixcommons": "SYMP"
    },
    "obofoundry": {
      "contact": "lynn.schriml@gmail.com",
      "contact.label": "Lynn Schriml",
      "deprecated": false,
      "description": "An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease.",
      "download.obo": "http://purl.obolibrary.org/obo/symp.obo",
      "download.owl": "http://purl.obolibrary.org/obo/symp.owl",
      "homepage": "http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page",
      "license": "CC0",
      "name": "Symptom Ontology",
      "prefix": "symp"
    },
    "ols": {
      "description": "The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases.",
      "download": "http://purl.obolibrary.org/obo/symp.owl",
      "homepage": "http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page",
      "license": "https://creativecommons.org/publicdomain/zero/1.0/",
      "name": "Symptom Ontology",
      "prefix": "symp",
      "version": "2020-08-04",
      "version.iri": "http://purl.obolibrary.org/obo/symp/releases/2020-08-04/symp.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/SYMP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "SYMP"
    },
    "synonyms": [
      "SYMP"
    ],
    "wikidata": {
      "prefix": "P8656"
    }
  },
  "syoid": {
    "deprecated": true,
    "name": "Gemina Symptom Ontology Identifier",
    "references": [
      "https://github.com/DiseaseOntology/SymptomOntology/issues/7#event-4223716562"
    ]
  },
  "t3db": {
    "mappings": {
      "miriam": "t3db",
      "n2t": "t3db",
      "prefixcommons": "T3DB"
    },
    "miriam": {
      "deprecated": false,
      "description": "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.",
      "homepage": "http://www.t3db.org/",
      "id": "00000103",
      "name": "T3DB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^T3D\\d+$",
      "prefix": "t3db",
      "provider_url": "http://www.t3db.org/toxins/$1",
      "sampleId": "T3D0001"
    },
    "n2t": {
      "description": "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.",
      "example": "T3D0001",
      "homepage": "http://www.t3db.org/",
      "name": "Toxin and Toxin Target Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^T3D\\d+$",
      "prefix": "t3db",
      "provider_url": "http://www.t3db.org/toxins/$1"
    },
    "name": "Toxin and Toxin Target Database",
    "prefixcommons": {
      "formatter": "http://identifiers.org/t3db/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "T3DB"
    }
  },
  "tads": {
    "bioportal": {
      "name": "Tick Gross Anatomy Ontology",
      "prefix": "TADS"
    },
    "download_obo": "http://purl.obolibrary.org/obo/tads.obo",
    "example": "0000547",
    "mappings": {
      "bioportal": "TADS",
      "obofoundry": "tads",
      "ols": "tads",
      "prefixcommons": "TADS"
    },
    "obofoundry": {
      "contact": "dsonensh@odu.edu",
      "contact.label": "Daniel Sonenshine",
      "deprecated": false,
      "description": "The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i>",
      "download.obo": "http://purl.obolibrary.org/obo/tads.obo",
      "download.owl": "http://purl.obolibrary.org/obo/tads.owl",
      "homepage": "https://www.vectorbase.org/ontology-browser",
      "license": "CC-BY 4.0",
      "name": "Tick Anatomy Ontology",
      "prefix": "tads"
    },
    "ols": {
      "description": "The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i>",
      "download": "http://purl.obolibrary.org/obo/tads.owl",
      "homepage": "https://www.vectorbase.org/ontology-browser",
      "name": "Tick Anatomy Ontology",
      "prefix": "tads",
      "version": "2015-08-20",
      "version.iri": "http://purl.obolibrary.org/obo/tads/2015-08-20/tads.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TADS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TADS"
    }
  },
  "tahe": {
    "mappings": {
      "obofoundry": "tahe",
      "prefixcommons": "TAHE"
    },
    "obofoundry": {
      "contact": "pierre.sprumont@unifr.ch",
      "contact.label": "Pierre Sprumont",
      "deprecated": true,
      "name": "Terminology of Anatomy of Human Embryology",
      "prefix": "tahe"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TAHE_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TAHE"
    }
  },
  "tahh": {
    "mappings": {
      "obofoundry": "tahh",
      "prefixcommons": "TAHH"
    },
    "obofoundry": {
      "contact": "pierre.sprumont@unifr.ch",
      "contact.label": "Pierre Sprumont",
      "deprecated": true,
      "name": "Terminology of Anatomy of Human Histology",
      "prefix": "tahh"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TAHH_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TAHH"
    }
  },
  "tair.gene": {
    "mappings": {
      "miriam": "tair.gene",
      "n2t": "tair.gene",
      "prefixcommons": "TAIR.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.",
      "homepage": "http://arabidopsis.org/index.jsp",
      "id": "00000049",
      "name": "TAIR Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Gene:\\d{7}$",
      "prefix": "tair.gene",
      "provider_url": "http://arabidopsis.org/servlets/TairObject?accession=$1",
      "sampleId": "Gene:2200934"
    },
    "n2t": {
      "description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.",
      "example": "Gene:2200934",
      "homepage": "http://arabidopsis.org/index.jsp",
      "name": "The Arabidopsis Information Resource (TAIR) Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Gene:\\d{7}$",
      "prefix": "tair.gene",
      "provider_url": "http://arabidopsis.org/servlets/TairObject?accession=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tair.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TAIR.GENE"
    }
  },
  "tair.locus": {
    "go": {
      "homepage": "http://www.arabidopsis.org/",
      "name": "The Arabidopsis Information Resource",
      "prefix": "TAIR"
    },
    "mappings": {
      "go": "TAIR",
      "miriam": "tair.locus",
      "n2t": "tair.locus",
      "ncbi": "TAIR",
      "prefixcommons": "TAIR.LOCUS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.",
      "homepage": "http://arabidopsis.org/index.jsp",
      "id": "00000050",
      "name": "TAIR Locus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{7}$",
      "prefix": "tair.locus",
      "provider_url": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1",
      "sampleId": "2200950"
    },
    "n2t": {
      "description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.",
      "example": "2200950",
      "homepage": "http://arabidopsis.org/index.jsp",
      "name": "The Arabidopsis Information Resource (TAIR) Locus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d{7}$",
      "prefix": "tair.locus",
      "provider_url": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1"
    },
    "ncbi": {
      "example": "AT1F51370",
      "homepage": "http://www.arabidopsis.org/servlets/Search?type=gene&action=new_search",
      "name": "Arabidopsis IR",
      "prefix": "TAIR"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tair.locus/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TAIR.LOCUS"
    }
  },
  "tair.protein": {
    "mappings": {
      "miriam": "tair.protein",
      "n2t": "tair.protein",
      "prefixcommons": "TAIR.PROTEIN"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept",
      "homepage": "http://arabidopsis.org/index.jsp",
      "id": "00000048",
      "name": "TAIR Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^AASequence:\\d{10}$",
      "prefix": "tair.protein",
      "provider_url": "http://arabidopsis.org/servlets/TairObject?accession=$1",
      "sampleId": "AASequence:1009107926"
    },
    "n2t": {
      "description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept",
      "example": "AASequence:1009107926",
      "homepage": "http://arabidopsis.org/index.jsp",
      "name": "The Arabidopsis Information Resource (TAIR) Protein",
      "namespaceEmbeddedInLui": false,
      "pattern": "^AASequence:\\d{10}$",
      "prefix": "tair.protein",
      "provider_url": "http://arabidopsis.org/servlets/TairObject?accession=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tair.protein/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TAIR.PROTEIN"
    }
  },
  "tao": {
    "bioportal": {
      "name": "Teleost Anatomy Ontology",
      "prefix": "TAO"
    },
    "example": "0000086",
    "mappings": {
      "bioportal": "TAO",
      "obofoundry": "tao",
      "prefixcommons": "TAO"
    },
    "name": "Teleost Anatomy Ontology",
    "obofoundry": {
      "contact": "wasila.dahdul@usd.edu",
      "contact.label": "Wasila Dahdul",
      "deprecated": true,
      "description": "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa",
      "download.owl": "http://purl.obolibrary.org/obo/tao.owl",
      "homepage": "http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology",
      "license": "CC-0",
      "name": "Teleost Anatomy Ontology",
      "prefix": "tao"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TAO"
    },
    "synonyms": [
      "TAO_RETIRED"
    ]
  },
  "tarbase": {
    "mappings": {
      "miriam": "tarbase",
      "n2t": "tarbase",
      "prefixcommons": "TARBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.",
      "homepage": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index",
      "id": "00000340",
      "name": "TarBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)?",
      "prefix": "tarbase",
      "provider_url": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1",
      "sampleId": "hsa-let-7a-2-3p"
    },
    "n2t": {
      "description": "TarBase stores microRNA (miRNA) information for miRNA&#x2013;gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.",
      "example": "hsa-let-7a-2-3p",
      "homepage": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index",
      "name": "TarBase v7 at University of Thessaly",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)?",
      "prefix": "tarbase",
      "provider_url": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tarbase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TARBASE"
    }
  },
  "taxrank": {
    "bioportal": {
      "name": "Taxonomic Rank Vocabulary",
      "prefix": "TAXRANK"
    },
    "example": "0000001",
    "mappings": {
      "bioportal": "TAXRANK",
      "obofoundry": "taxrank",
      "ols": "taxrank",
      "prefixcommons": "TAXRANK"
    },
    "obofoundry": {
      "contact": "balhoff@renci.org",
      "contact.label": "Jim Balhoff",
      "deprecated": false,
      "description": "A vocabulary of taxonomic ranks (species, family, phylum, etc)",
      "download.obo": "http://purl.obolibrary.org/obo/taxrank.obo",
      "download.owl": "http://purl.obolibrary.org/obo/taxrank.owl",
      "homepage": "https://github.com/phenoscape/taxrank",
      "license": "CC-0",
      "name": "Taxonomic rank vocabulary",
      "prefix": "taxrank"
    },
    "ols": {
      "description": "A vocabulary of taxonomic ranks (species, family, phylum, etc)",
      "download": "http://purl.obolibrary.org/obo/taxrank.owl",
      "homepage": "https://github.com/phenoscape/taxrank",
      "name": "Taxonomic rank vocabulary",
      "prefix": "taxrank",
      "version": "2016-04-15",
      "version.iri": "http://purl.obolibrary.org/obo/taxrank/releases/2016-04-15/taxrank.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TAXRANK_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TAXRANK"
    }
  },
  "tcdb": {
    "go": {
      "formatter": "http://www.tcdb.org/tcdb/index.php?tc=$1",
      "homepage": "http://www.tcdb.org/",
      "name": "Transport Protein Database",
      "prefix": "TC"
    },
    "homepage": "https://www.tcdb.org",
    "mappings": {
      "go": "TC",
      "miriam": "tcdb",
      "n2t": "tcdb",
      "prefixcommons": "TCDB",
      "uniprot": "TCDB",
      "uniprot.database": "TCDB",
      "wikidata": "P7260"
    },
    "miriam": {
      "deprecated": false,
      "description": "The database details a comprehensive  IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.",
      "homepage": "http://www.tcdb.org/",
      "id": "00000040",
      "name": "Transport Classification Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$",
      "prefix": "tcdb",
      "provider_url": "http://www.tcdb.org/search/result.php?tc=$1",
      "sampleId": "5.A.1.1.1"
    },
    "n2t": {
      "description": "The database details a comprehensive  IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.",
      "example": "5.A.1.1.1",
      "homepage": "http://www.tcdb.org/",
      "name": "TCDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$",
      "prefix": "tcdb",
      "provider_url": "http://www.tcdb.org/search/result.php?tc=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tcdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TCDB"
    },
    "synonyms": [
      "TC"
    ],
    "uniprot": {
      "category": "Protein family/group databases",
      "formatter": "http://www.tcdb.org/search/result.php?tc=%s",
      "identifier": "135",
      "link_is_explicit": "true",
      "name": "Transport Classification Database",
      "prefix": "TCDB"
    },
    "wikidata": {
      "database": "Q142667",
      "database.homepage": "http://www.tcdb.org/",
      "database.label": "Transporter Classification database",
      "format": "http://www.tcdb.org/search/result.php?tc=$1",
      "homepage": "https://www.tcdb.org",
      "name": "Transporter Classification Database ID",
      "pattern": "\\d|(\\d\\.[A-Z](\\.(\\d{1,3}){0,3}))",
      "prefix": "P7260"
    }
  },
  "te": {
    "example": "E5.11.2.0.0.0.4",
    "name": "Terminologia Embryologica",
    "wikidata": {
      "prefix": "P1693"
    }
  },
  "tfclass": {
    "example": "2.1.1",
    "go": {
      "formatter": "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1",
      "homepage": "http://tfclass.bioinf.med.uni-goettingen.de/",
      "name": "TFClass is a resource for the classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains",
      "prefix": "TFClass",
      "synonyms": [
        "TFCLASS_FAMILY",
        "tfclass"
      ]
    },
    "homepage": "http://tfclass.bioinf.med.uni-goettingen.de",
    "mappings": {
      "go": "TFClass"
    },
    "name": "Classification of Transcription Factors in Mammalia",
    "url": "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1"
  },
  "tgd": {
    "go": {
      "homepage": "http://www.ciliate.org/",
      "name": "Tetrahymena Genome Database",
      "prefix": "TGD"
    },
    "mappings": {
      "go": "TGD",
      "miriam": "tgd",
      "n2t": "tgd",
      "prefixcommons": "TGD"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.",
      "homepage": "http://ciliate.org/index.php/",
      "id": "00000313",
      "name": "Tetrahymena Genome Database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TTHERM\\_\\d+$",
      "prefix": "tgd",
      "provider_url": "http://ciliate.org/index.php/feature/details/$1",
      "sampleId": "TTHERM_00648910"
    },
    "n2t": {
      "description": "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.",
      "example": "TTHERM_00648910",
      "homepage": "http://ciliate.org/index.php/",
      "name": "TGD at Stanford University",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TTHERM\\_\\d+$",
      "prefix": "tgd",
      "provider_url": "http://ciliate.org/index.php/feature/details/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tgd/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TGD"
    }
  },
  "tgma": {
    "bioportal": {
      "name": "Mosquito Gross Anatomy Ontology",
      "prefix": "TGMA"
    },
    "download_obo": "http://purl.obolibrary.org/obo/tgma.obo",
    "example": "0000984",
    "mappings": {
      "bioportal": "TGMA",
      "obofoundry": "tgma",
      "ols": "tgma",
      "prefixcommons": "TGMA"
    },
    "obofoundry": {
      "contact": "topalis@imbb.forth.gr",
      "contact.label": "Pantelis Topalis",
      "deprecated": false,
      "description": "A structured controlled vocabulary of the anatomy of mosquitoes.",
      "download.obo": "http://purl.obolibrary.org/obo/tgma.obo",
      "download.owl": "http://purl.obolibrary.org/obo/tgma.owl",
      "homepage": "https://www.vectorbase.org/ontology-browser",
      "license": "CC0",
      "name": "Mosquito gross anatomy ontology",
      "prefix": "tgma"
    },
    "ols": {
      "description": "A structured controlled vocabulary of the anatomy of mosquitoes.",
      "download": "http://purl.obolibrary.org/obo/tgma.owl",
      "homepage": "https://www.vectorbase.org/ontology-browser",
      "name": "Mosquito gross anatomy ontology",
      "prefix": "tgma",
      "version": "2013-06-03",
      "version.iri": "http://purl.obolibrary.org/obo/tgma/releases/2013-06-03/tgma.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TGMA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TGMA"
    }
  },
  "th": {
    "example": "H3.03.00.0.00007",
    "name": "Terminologia Histologica"
  },
  "tigrfam": {
    "mappings": {
      "miriam": "tigrfam",
      "n2t": "tigrfam",
      "ncbi": "TIGRFAM",
      "prefixcommons": "TIGRFAM"
    },
    "miriam": {
      "deprecated": false,
      "description": "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.",
      "homepage": "http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi",
      "id": "00000315",
      "name": "TIGRFAMS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TIGR\\d+$",
      "prefix": "tigrfam",
      "provider_url": "http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=$1",
      "sampleId": "TIGR00010"
    },
    "n2t": {
      "description": "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.",
      "example": "TIGR00010",
      "homepage": "http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi",
      "name": "TIGRFAM at JCVI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TIGR\\d+$",
      "prefix": "tigrfam",
      "provider_url": "http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=$1"
    },
    "ncbi": {
      "example": "TIGR00094",
      "homepage": "http://www.tigr.org/TIGRFAMs/index.shtml",
      "name": "TIGR protein families",
      "prefix": "TIGRFAM"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tigrfam/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TIGRFAM"
    }
  },
  "tissuelist": {
    "mappings": {
      "miriam": "tissuelist",
      "n2t": "tissuelist",
      "prefixcommons": "TISSUELIST"
    },
    "miriam": {
      "deprecated": false,
      "description": "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified.",
      "homepage": "https://www.uniprot.org/docs/tisslist.txt",
      "id": "00000360",
      "name": "Tissue List",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TS-\\d{4}$",
      "prefix": "tissuelist",
      "provider_url": "https://www.uniprot.org/tissues/$1",
      "sampleId": "TS-0285"
    },
    "n2t": {
      "description": "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified.",
      "example": "TS-0285",
      "homepage": "https://www.uniprot.org/docs/tisslist.txt",
      "name": "Tissue List at Swiss Institute of Bioinformatics",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TS-\\d{4}$",
      "prefix": "tissuelist",
      "provider_url": "https://www.uniprot.org/tissues/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tissuelist/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TISSUELIST"
    }
  },
  "tkg": {
    "homepage": "http://www2.idac.tohoku.ac.jp/dep/ccr/",
    "name": "Tohoku University cell line catalog",
    "url": "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html"
  },
  "to": {
    "bioportal": {
      "name": "Plant Trait Ontology",
      "prefix": "PTO"
    },
    "example": "0000630",
    "mappings": {
      "bioportal": "PTO",
      "obofoundry": "to",
      "ols": "to",
      "prefixcommons": "TO"
    },
    "obofoundry": {
      "contact": "jaiswalp@science.oregonstate.edu",
      "contact.label": "Pankaj Jaiswal",
      "deprecated": false,
      "description": "A controlled vocabulary of describe phenotypic traits in plants.",
      "download.obo": "http://purl.obolibrary.org/obo/to.obo",
      "download.owl": "http://purl.obolibrary.org/obo/to.owl",
      "homepage": "http://browser.planteome.org/amigo",
      "license": "CC-BY 4.0",
      "name": "Plant Trait Ontology",
      "prefix": "to"
    },
    "ols": {
      "description": "A controlled vocabulary of describe phenotypic traits in plants.",
      "download": "http://purl.obolibrary.org/obo/to.owl",
      "homepage": "http://browser.planteome.org/amigo",
      "name": "Plant Trait Ontology",
      "prefix": "to",
      "version": "2021-04-06",
      "version.iri": "http://purl.obolibrary.org/obo/to/releases/2021-04-06/to.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TO"
    }
  },
  "tol": {
    "mappings": {
      "miriam": "tol",
      "n2t": "tol",
      "prefixcommons": "TOL"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). \r\n\r\nEach page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things.",
      "homepage": "http://tolweb.org/tree/",
      "id": "00000405",
      "name": "Tree of Life",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "tol",
      "provider_url": "http://tolweb.org/$1",
      "sampleId": "98034"
    },
    "n2t": {
      "description": "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny).   Each page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things.",
      "example": "98034",
      "homepage": "http://tolweb.org/tree/",
      "name": "Tree of Life Web",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "tol",
      "provider_url": "http://tolweb.org/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tol/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TOL"
    }
  },
  "topdb": {
    "mappings": {
      "miriam": "topdb",
      "n2t": "topdb",
      "prefixcommons": "TOPDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.",
      "homepage": "http://topdb.enzim.hu/",
      "id": "00000503",
      "name": "TOPDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "topdb",
      "provider_url": "http://topdb.enzim.hu/?m=show&id=$1",
      "sampleId": "AP00378"
    },
    "n2t": {
      "description": "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.",
      "example": "AP00378",
      "homepage": "http://topdb.enzim.hu/",
      "name": "TOPDB at Hungarian Academy of Sciences",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "topdb",
      "provider_url": "http://topdb.enzim.hu/?m=show&id=$1"
    },
    "name": "Topology Data Bank of Transmembrane Proteins",
    "prefixcommons": {
      "formatter": "http://identifiers.org/topdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TOPDB"
    }
  },
  "topfind": {
    "homepage": "https://topfind.clip.msl.ubc.ca",
    "mappings": {
      "miriam": "topfind",
      "n2t": "topfind",
      "prefixcommons": "TOPFIND"
    },
    "miriam": {
      "deprecated": false,
      "description": "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.",
      "homepage": "http://clipserve.clip.ubc.ca/topfind",
      "id": "00000255",
      "name": "TopFind",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
      "prefix": "topfind",
      "provider_url": "http://clipserve.clip.ubc.ca/topfind/proteins/$1",
      "sampleId": "Q9UKQ2"
    },
    "n2t": {
      "description": "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.",
      "example": "Q9UKQ2",
      "homepage": "http://clipserve.clip.ubc.ca/topfind",
      "name": "TopFind at University of British Columbia",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
      "prefix": "topfind",
      "provider_url": "http://clipserve.clip.ubc.ca/topfind/proteins/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/topfind/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TOPFIND"
    }
  },
  "toxoplasma": {
    "mappings": {
      "miriam": "toxoplasma",
      "n2t": "toxoplasma",
      "prefixcommons": "TOXOPLASMA"
    },
    "miriam": {
      "deprecated": false,
      "description": "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "http://toxodb.org/toxo/",
      "id": "00000153",
      "name": "ToxoDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "toxoplasma",
      "provider_url": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1",
      "sampleId": "TGME49_053730"
    },
    "n2t": {
      "description": "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "TGME49_053730",
      "homepage": "http://toxodb.org/toxo/",
      "name": "ToxoDB at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "toxoplasma",
      "provider_url": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/toxoplasma/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TOXOPLASMA"
    }
  },
  "trans": {
    "bioportal": {
      "name": "Nurse Transitional",
      "prefix": "TRANS"
    },
    "example": "0000024",
    "mappings": {
      "bioportal": "TRANS",
      "obofoundry": "trans",
      "ols": "trans",
      "prefixcommons": "TRANS"
    },
    "obofoundry": {
      "contact": "lynn.schriml@gmail.com",
      "contact.label": "Lynn Schriml",
      "deprecated": false,
      "description": "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host.",
      "download.obo": "http://purl.obolibrary.org/obo/trans.obo",
      "download.owl": "http://purl.obolibrary.org/obo/trans.owl",
      "homepage": "https://github.com/DiseaseOntology/PathogenTransmissionOntology",
      "license": "CC0",
      "name": "Pathogen Transmission Ontology",
      "prefix": "trans"
    },
    "ols": {
      "description": "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.",
      "download": "http://purl.obolibrary.org/obo/trans.owl",
      "homepage": "https://github.com/DiseaseOntology/PathogenTransmissionOntology",
      "license": "https://creativecommons.org/publicdomain/zero/1.0/",
      "name": "Pathogen Transmission Ontology",
      "prefix": "trans",
      "version": "2020-08-04",
      "version.iri": "http://purl.obolibrary.org/obo/trans/releases/2020-08-04/trans.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TRANS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TRANS"
    }
  },
  "transyt": {
    "mappings": {
      "miriam": "transyt"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes.",
      "homepage": "https://www.bio.di.uminho.pt/",
      "id": "00000736",
      "name": "TranSyT",
      "namespaceEmbeddedInLui": false,
      "pattern": "T[A-Z]\\d{7}",
      "prefix": "transyt",
      "provider_url": "https://transyt.bio.di.uminho.pt/reactions/$1",
      "sampleId": "TR0000001"
    },
    "name": "Transport Systems Tracker"
  },
  "treebase": {
    "mappings": {
      "miriam": "treebase",
      "n2t": "treebase",
      "prefixcommons": "TREEBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.",
      "homepage": "http://treebase.org/",
      "id": "00000312",
      "name": "TreeBASE",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TB[1,2]?:[A-Z][a-z]?\\d+$",
      "prefix": "treebase",
      "provider_url": "http://purl.org/phylo/treebase/phylows/study/$1?format=html",
      "sampleId": "TB2:S1000"
    },
    "n2t": {
      "description": "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.",
      "example": "TB2:S1000",
      "homepage": "http://treebase.org/",
      "name": "TreeBASE (hosted at National Evolutionary Synthesis Center)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TB[1,2]?:[A-Z][a-z]?\\d+$",
      "prefix": "treebase",
      "provider_url": "http://purl.org/phylo/treebase/phylows/study/$1?format=html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/treebase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TREEBASE"
    }
  },
  "treefam": {
    "mappings": {
      "miriam": "treefam",
      "n2t": "treefam",
      "prefixcommons": "TREEFAM",
      "uniprot": "TreeFam",
      "uniprot.database": "TreeFam"
    },
    "miriam": {
      "deprecated": false,
      "description": "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments.",
      "homepage": "http://www.treefam.org/",
      "id": "00000395",
      "name": "TreeFam",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{1,2}\\d+$",
      "prefix": "treefam",
      "provider_url": "http://www.treefam.org/family/$1",
      "sampleId": "TF101014"
    },
    "n2t": {
      "description": "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments.",
      "example": "TF101014",
      "homepage": "http://www.treefam.org/",
      "name": "TreeFam database",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w{1,2}\\d+$",
      "prefix": "treefam",
      "provider_url": "http://www.treefam.org/family/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/treefam/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TREEFAM"
    },
    "uniprot": {
      "category": "Phylogenomic databases",
      "formatter": "http://www.treefam.org/family/%s",
      "identifier": "185",
      "link_is_explicit": "true",
      "name": "TreeFam database of animal gene trees",
      "prefix": "TreeFam"
    }
  },
  "trichdb": {
    "mappings": {
      "miriam": "trichdb",
      "n2t": "trichdb",
      "prefixcommons": "TRICHDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "http://trichdb.org/trichdb/",
      "id": "00000154",
      "name": "TrichDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "trichdb",
      "provider_url": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1",
      "sampleId": "TVAG_386080"
    },
    "n2t": {
      "description": "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "TVAG_386080",
      "homepage": "http://trichdb.org/trichdb/",
      "name": "TrichDB at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "trichdb",
      "provider_url": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/trichdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TRICHDB"
    }
  },
  "tritrypdb": {
    "mappings": {
      "miriam": "tritrypdb",
      "n2t": "tritrypdb",
      "prefixcommons": "TRITRYPDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "homepage": "http://tritrypdb.org/tritrypdb/",
      "id": "00000155",
      "name": "TriTrypDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\.)?\\w+(\\.)?\\w+",
      "prefix": "tritrypdb",
      "provider_url": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1",
      "sampleId": "Tb927.8.620"
    },
    "n2t": {
      "description": "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.",
      "example": "Tb927.8.620",
      "homepage": "http://tritrypdb.org/tritrypdb/",
      "name": "TriTrypDB at EuPathDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\.)?\\w+(\\.)?\\w+",
      "prefix": "tritrypdb",
      "provider_url": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/tritrypdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TRITRYPDB"
    }
  },
  "ttd.drug": {
    "mappings": {
      "miriam": "ttd.drug",
      "n2t": "ttd.drug",
      "prefixcommons": "TTD.DRUG"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.",
      "homepage": "http://bidd.nus.edu.sg/group/ttd/ttd.asp",
      "id": "00000092",
      "name": "TTD Drug",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DAP\\d+$",
      "prefix": "ttd.drug",
      "provider_url": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$1",
      "sampleId": "DAP000773"
    },
    "n2t": {
      "description": "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.",
      "example": "DAP000773",
      "homepage": "http://bidd.nus.edu.sg/group/ttd/ttd.asp",
      "name": "Therapeutic Target Database Drug",
      "namespaceEmbeddedInLui": false,
      "pattern": "^DAP\\d+$",
      "prefix": "ttd.drug",
      "provider_url": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ttd.drug/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TTD.DRUG"
    }
  },
  "ttd.target": {
    "mappings": {
      "miriam": "ttd.target",
      "n2t": "ttd.target",
      "prefixcommons": "TTD.TARGET"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.",
      "homepage": "http://bidd.nus.edu.sg/group/ttd/ttd.asp",
      "id": "00000093",
      "name": "TTD Target",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TTDS\\d+$",
      "prefix": "ttd.target",
      "provider_url": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$1",
      "sampleId": "TTDS00056"
    },
    "n2t": {
      "description": "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.",
      "example": "TTDS00056",
      "homepage": "http://bidd.nus.edu.sg/group/ttd/ttd.asp",
      "name": "Therapeutic Target Database Target",
      "namespaceEmbeddedInLui": false,
      "pattern": "^TTDS\\d+$",
      "prefix": "ttd.target",
      "provider_url": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ttd.target/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "TTD.TARGET"
    }
  },
  "tto": {
    "bioportal": {
      "name": "Teleost Taxonomy Ontology",
      "prefix": "TTO"
    },
    "example": "1058367",
    "mappings": {
      "bioportal": "TTO",
      "obofoundry": "tto",
      "ols": "tto",
      "prefixcommons": "TTO"
    },
    "obofoundry": {
      "contact": "balhoff@renci.org",
      "contact.label": "Jim Balhoff",
      "deprecated": false,
      "description": "An ontology covering the taxonomy of teleosts (bony fish)",
      "download.obo": "http://purl.obolibrary.org/obo/tto.obo",
      "download.owl": "http://purl.obolibrary.org/obo/tto.owl",
      "homepage": "https://github.com/phenoscape/teleost-taxonomy-ontology",
      "license": "CC-0",
      "name": "Teleost taxonomy ontology",
      "prefix": "tto"
    },
    "ols": {
      "description": "An ontology covering the taxonomy of teleosts (bony fish)",
      "download": "http://purl.obolibrary.org/obo/tto.owl",
      "homepage": "https://github.com/phenoscape/teleost-taxonomy-ontology",
      "name": "Teleost taxonomy ontology",
      "prefix": "tto",
      "version": "2018-03-26",
      "version.iri": "http://purl.obolibrary.org/obo/tto/2012-05-18/tto.owl"
    },
    "pattern": "^\\d+$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/TTO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "TTO"
    },
    "wikidata": {
      "database": "Q81661821"
    }
  },
  "txpo": {
    "bioportal": {
      "name": "Toxic Process Ontology",
      "prefix": "TXPO"
    },
    "mappings": {
      "bioportal": "TXPO",
      "obofoundry": "txpo",
      "ols": "txpo"
    },
    "obofoundry": {
      "contact": "y-yamagata@nibiohn.go.jp",
      "contact.label": "Yuki Yamagata",
      "deprecated": false,
      "description": "TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.",
      "download.owl": "http://purl.obolibrary.org/obo/txpo.owl",
      "homepage": "https://toxpilot.nibiohn.go.jp/",
      "license": "CC-BY version 3.0",
      "name": "Toxic Process Ontology",
      "prefix": "txpo"
    },
    "ols": {
      "description": "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.\n\nThe TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.\n\nIn applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp",
      "download": "http://purl.obolibrary.org/obo/txpo.owl",
      "homepage": "https://toxpilot.nibiohn.go.jp/",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "TOXic Process Ontology (TXPO)",
      "prefix": "txpo",
      "version": "2020-07-09",
      "version.iri": "http://purl.obolibrary.org/obo/txpo/releases/2020-03-03/txpo.owl"
    }
  },
  "uberon": {
    "bioportal": {
      "name": "Uber Anatomy Ontology",
      "prefix": "UBERON"
    },
    "download_obo": "http://purl.obolibrary.org/obo/uberon/basic.obo",
    "example": "2005080",
    "go": {
      "description": "A multi-species anatomy ontology",
      "homepage": "http://uberon.org",
      "name": "Uber-anatomy ontology",
      "prefix": "UBERON"
    },
    "mappings": {
      "bioportal": "UBERON",
      "go": "UBERON",
      "miriam": "uberon",
      "n2t": "uberon",
      "obofoundry": "uberon",
      "ols": "uberon",
      "prefixcommons": "UBERON"
    },
    "miriam": {
      "deprecated": false,
      "description": "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.",
      "homepage": "https://www.ebi.ac.uk/ols/ontologies/uberon",
      "id": "00000446",
      "name": "UBERON",
      "namespaceEmbeddedInLui": true,
      "pattern": "^UBERON:\\d+$",
      "prefix": "uberon",
      "provider_url": "https://www.ebi.ac.uk/ols/ontologies/uberon/terms?obo_id=UBERON:$1",
      "sampleId": "0008203"
    },
    "n2t": {
      "description": "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.",
      "example": "0008203",
      "homepage": "http://bioportal.bioontology.org/ontologies/UBERON",
      "name": "UBERON through bioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^UBERON\\:\\d+$",
      "prefix": "uberon",
      "provider_url": "http://purl.bioontology.org/ontology/UBERON/UBERON:$1"
    },
    "name": "Uber Anatomy Ontology",
    "obofoundry": {
      "contact": "cjmungall@lbl.gov",
      "contact.label": "Chris Mungall",
      "deprecated": false,
      "description": "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies",
      "download.owl": "http://purl.obolibrary.org/obo/uberon.owl",
      "homepage": "http://uberon.org",
      "license": "CC-BY",
      "name": "Uberon multi-species anatomy ontology",
      "prefix": "uberon"
    },
    "ols": {
      "description": "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.",
      "download": "http://purl.obolibrary.org/obo/uberon.owl",
      "homepage": "http://uberon.org",
      "license": "http://creativecommons.org/licenses/by/3.0/",
      "name": "Uber-anatomy ontology",
      "prefix": "uberon",
      "version": "2021-07-25",
      "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2021-07-25/uberon.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/UBERON_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "UBERON"
    },
    "synonyms": [
      "UBERON",
      "Uberon",
      "Uber-anatomy ontology"
    ],
    "wikidata": {
      "prefix": "P1554"
    }
  },
  "ubio.namebank": {
    "mappings": {
      "miriam": "ubio.namebank",
      "n2t": "ubio.namebank",
      "prefixcommons": "UBIO.NAMEBANK"
    },
    "miriam": {
      "deprecated": false,
      "description": "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context.",
      "homepage": "http://www.ubio.org",
      "id": "00000338",
      "name": "uBio NameBank",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ubio.namebank",
      "provider_url": "http://www.ubio.org/browser/details.php?namebankID=$1",
      "sampleId": "2555646"
    },
    "n2t": {
      "description": "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context.",
      "example": "2555646",
      "homepage": "http://www.ubio.org",
      "name": "uBio NameBank at The Marine Biological Laboratory",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "ubio.namebank",
      "provider_url": "http://www.ubio.org/browser/details.php?namebankID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/ubio.namebank/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UBIO.NAMEBANK"
    }
  },
  "ubprop": {
    "comment": "All of these are typedefs in uberon now",
    "deprecated": true,
    "name": "Uberon Property"
  },
  "ucsc": {
    "example": "uc001rvw.5",
    "homepage": "https://genome.ucsc.edu/",
    "mappings": {
      "prefixcommons": "UCSC",
      "uniprot": "UCSC",
      "uniprot.database": "UCSC"
    },
    "name": "UCSC Genome Browser",
    "prefixcommons": {
      "formatter": "ftp://hgdownload.cse.ucsc.edu/goldenPath/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "UCSC"
    },
    "uniprot": {
      "category": "Genome annotation databases",
      "formatter": "https://genome.ucsc.edu/cgi-bin/hgLinkIn?resource=uniprot&id=%u",
      "identifier": "139",
      "link_is_explicit": "true",
      "name": "UCSC genome browser",
      "prefix": "UCSC"
    },
    "wikidata": {
      "prefix": "P2576"
    }
  },
  "umbbd.compound": {
    "mappings": {
      "miriam": "umbbd.compound",
      "n2t": "umbbd.compound",
      "prefixcommons": "UMBBD.COMPOUND"
    },
    "miriam": {
      "deprecated": false,
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information.",
      "homepage": "http://umbbd.ethz.ch/",
      "id": "00000276",
      "name": "UM-BBD Compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^c\\d+$",
      "prefix": "umbbd.compound",
      "provider_url": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1",
      "sampleId": "c0001"
    },
    "n2t": {
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information.",
      "example": "c0001",
      "homepage": "http://umbbd.ethz.ch/",
      "name": "Biocatalysis/Biodegradation Database Mirror (Compound) at ETH Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^c\\d+$",
      "prefix": "umbbd.compound",
      "provider_url": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/umbbd.compound/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UMBBD.COMPOUND"
    },
    "synonyms": [
      "UM-BBD_compID"
    ],
    "url": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1",
    "wikidata": {
      "prefix": "P8121"
    }
  },
  "umbbd.enzyme": {
    "go": {
      "formatter": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1",
      "homepage": "http://eawag-bbd.ethz.ch/",
      "name": "EAWAG Biocatalysis/Biodegradation Database",
      "prefix": "UM-BBD_enzymeID"
    },
    "mappings": {
      "go": "UM-BBD_enzymeID",
      "miriam": "umbbd.enzyme",
      "n2t": "umbbd.enzyme",
      "prefixcommons": "UMBBD.ENZYME"
    },
    "miriam": {
      "deprecated": false,
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information.",
      "homepage": "http://umbbd.ethz.ch/",
      "id": "00000326",
      "name": "UM-BBD Enzyme",
      "namespaceEmbeddedInLui": false,
      "pattern": "^e\\d+$",
      "prefix": "umbbd.enzyme",
      "provider_url": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1",
      "sampleId": "e0333"
    },
    "n2t": {
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information.",
      "example": "e0333",
      "homepage": "http://umbbd.ethz.ch/",
      "name": "Biocatalysis/Biodegradation Database Mirror (Enzyme) at ETH Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^e\\d+$",
      "prefix": "umbbd.enzyme",
      "provider_url": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/umbbd.enzyme/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UMBBD.ENZYME"
    },
    "synonyms": [
      "UM-BBD_enzymeID"
    ],
    "url": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1"
  },
  "umbbd.pathway": {
    "go": {
      "formatter": "http://eawag-bbd.ethz.ch/$1/$1_map.html",
      "homepage": "http://eawag-bbd.ethz.ch/",
      "name": "EAWAG Biocatalysis/Biodegradation Database",
      "prefix": "UM-BBD_pathwayID"
    },
    "mappings": {
      "go": "UM-BBD_pathwayID",
      "miriam": "umbbd.pathway",
      "n2t": "umbbd.pathway",
      "prefixcommons": "UMBBD.PATHWAY"
    },
    "miriam": {
      "deprecated": false,
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information.",
      "homepage": "http://umbbd.ethz.ch/",
      "id": "00000327",
      "name": "UM-BBD Pathway",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "umbbd.pathway",
      "provider_url": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1",
      "sampleId": "ala"
    },
    "n2t": {
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information.",
      "example": "ala",
      "homepage": "http://umbbd.ethz.ch/",
      "name": "Biocatalysis/Biodegradation Database Mirror (Pathway) at ETH Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "umbbd.pathway",
      "provider_url": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/umbbd.pathway/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UMBBD.PATHWAY"
    },
    "synonyms": [
      "UM-BBD_pathwayID"
    ],
    "url": "http://eawag-bbd.ethz.ch/$1/$1_map.html"
  },
  "umbbd.reaction": {
    "go": {
      "formatter": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1",
      "homepage": "http://eawag-bbd.ethz.ch/",
      "name": "EAWAG Biocatalysis/Biodegradation Database",
      "prefix": "UM-BBD_reactionID"
    },
    "mappings": {
      "go": "UM-BBD_reactionID",
      "miriam": "umbbd.reaction",
      "n2t": "umbbd.reaction",
      "prefixcommons": "UMBBD.REACTION"
    },
    "miriam": {
      "deprecated": false,
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information.",
      "homepage": "http://umbbd.ethz.ch/",
      "id": "00000325",
      "name": "UM-BBD Reaction",
      "namespaceEmbeddedInLui": false,
      "pattern": "^r\\d+$",
      "prefix": "umbbd.reaction",
      "provider_url": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1",
      "sampleId": "r0001"
    },
    "n2t": {
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information.",
      "example": "r0001",
      "homepage": "http://umbbd.ethz.ch/",
      "name": "Biocatalysis/Biodegradation Database Mirror (Reaction) at ETH Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^r\\d+$",
      "prefix": "umbbd.reaction",
      "provider_url": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/umbbd.reaction/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UMBBD.REACTION"
    },
    "synonyms": [
      "UM-BBD_reactionID"
    ],
    "url": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1",
    "wikidata": {
      "database": "Q24188985"
    }
  },
  "umbbd.rule": {
    "go": {
      "formatter": "http://eawag-bbd.ethz.ch/servlets/rule.jsp?rule=$1",
      "homepage": "http://eawag-bbd.ethz.ch/",
      "name": "EAWAG Biocatalysis/Biodegradation Database",
      "prefix": "UM-BBD_ruleID"
    },
    "mappings": {
      "go": "UM-BBD_ruleID",
      "miriam": "umbbd.rule",
      "n2t": "umbbd.rule",
      "prefixcommons": "UMBBD.RULE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.",
      "homepage": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules",
      "id": "00000328",
      "name": "UM-BBD Biotransformation Rule",
      "namespaceEmbeddedInLui": false,
      "pattern": "^bt\\d+$",
      "prefix": "umbbd.rule",
      "provider_url": "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1",
      "sampleId": "bt0001"
    },
    "n2t": {
      "description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.",
      "example": "bt0001",
      "homepage": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules",
      "name": "Biocatalysis/Biodegradation Database Mirror (Biotransformation Rule) at ETH Zurich",
      "namespaceEmbeddedInLui": false,
      "pattern": "^bt\\d+$",
      "prefix": "umbbd.rule",
      "provider_url": "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/umbbd.rule/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UMBBD.RULE"
    },
    "synonyms": [
      "UM-BBD_ruleID"
    ]
  },
  "umls": {
    "example": "C2584994",
    "mappings": {
      "miriam": "umls",
      "n2t": "umls",
      "prefixcommons": "UMLS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.",
      "homepage": "http://linkedlifedata.com/",
      "id": "00000559",
      "name": "UMLS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "umls",
      "provider_url": "http://linkedlifedata.com/resource/umls/id/$1",
      "sampleId": "C0021390"
    },
    "n2t": {
      "description": "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.",
      "example": "C0021390",
      "homepage": "http://linkedlifedata.com/",
      "name": "Unified Medical Language System at LinkedLifeData",
      "namespaceEmbeddedInLui": false,
      "pattern": "^C\\d+$",
      "prefix": "umls",
      "provider_url": "http://linkedlifedata.com/resource/umls/id/$1"
    },
    "name": "Unified Medical Language System",
    "prefixcommons": {
      "formatter": "http://linkedlifedata.com/resource/umls/id/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "UMLS"
    },
    "synonyms": [
      "UMLS",
      "UMLS_CUI",
      "UMLS CUI"
    ],
    "wikidata": {
      "prefix": "P2892"
    }
  },
  "unigene": {
    "mappings": {
      "miriam": "unigene",
      "n2t": "unigene",
      "prefixcommons": "UNIGENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.",
      "homepage": "http://www.ncbi.nlm.nih.gov/unigene",
      "id": "00000346",
      "name": "UniGene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "unigene",
      "provider_url": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1",
      "sampleId": "4900"
    },
    "n2t": {
      "description": "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.",
      "example": "4900",
      "homepage": "http://www.ncbi.nlm.nih.gov/unigene",
      "name": "UniGene at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "unigene",
      "provider_url": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/unigene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNIGENE"
    }
  },
  "unii": {
    "mappings": {
      "miriam": "unii",
      "n2t": "unii",
      "prefixcommons": "UNII"
    },
    "miriam": {
      "deprecated": false,
      "description": "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information.",
      "homepage": "http://fdasis.nlm.nih.gov/srs/",
      "id": "00000531",
      "name": "UNII",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "unii",
      "provider_url": "http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=$1",
      "sampleId": "3G6A5W338E"
    },
    "n2t": {
      "description": "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance&#x2019;s molecular structure and/or descriptive information.",
      "example": "3G6A5W338E",
      "homepage": "http://fdasis.nlm.nih.gov/srs/",
      "name": "UNII at U.S. Food and Drug Administration",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "unii",
      "provider_url": "http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=$1"
    },
    "name": "Unique Ingredient Identifier",
    "prefixcommons": {
      "formatter": "http://fdasis.nlm.nih.gov/srs/unii/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "UNII"
    },
    "wikidata": {
      "prefix": "P652"
    }
  },
  "unimod": {
    "mappings": {
      "miriam": "unimod",
      "n2t": "unimod",
      "ols": "unimod",
      "prefixcommons": "UNIMOD"
    },
    "miriam": {
      "deprecated": false,
      "description": "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).",
      "homepage": "http://www.unimod.org/",
      "id": "00000447",
      "name": "Unimod",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "unimod",
      "provider_url": "http://www.unimod.org/modifications_view.php?editid1=$1",
      "sampleId": "1200"
    },
    "n2t": {
      "description": "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).",
      "example": "1200",
      "homepage": "http://www.unimod.org/",
      "name": "Unimod at Matrix Sciences Ltd.",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "unimod",
      "provider_url": "http://www.unimod.org/modifications_view.php?editid1=$1"
    },
    "ols": {
      "contact": "psidev-ms-vocab@lists.sourceforge.net",
      "description": "Unimod is a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, an d site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).",
      "download": "http://www.unimod.org/obo/unimod.obo",
      "homepage": "http://www.unimod.org/",
      "name": "Unimod protein modification database for mass spectrometry",
      "prefix": "unimod",
      "version": "2019-11-21"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/unimod/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNIMOD"
    }
  },
  "uniparc": {
    "go": {
      "description": "A non-redundant archive of protein sequences extracted from Swiss-Prot, TrEMBL, PIR-PSD, EMBL, Ensembl, IPI, PDB, RefSeq, FlyBase, WormBase, European Patent Office, United States Patent and Trademark Office, and Japanese Patent Office",
      "formatter": "https://www.uniprot.org/uniparc/$1",
      "homepage": "https://www.uniprot.org/uniparc/",
      "name": "UniProt Archive",
      "prefix": "UniParc"
    },
    "mappings": {
      "go": "UniParc",
      "miriam": "uniparc",
      "n2t": "uniparc",
      "prefixcommons": "UNIPARC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The UniProt Archive (UniParc) is a  database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.",
      "homepage": "http://www.uniprot.org/uniparc/",
      "id": "00000041",
      "name": "UniParc",
      "namespaceEmbeddedInLui": false,
      "pattern": "^UPI[A-F0-9]{10}$",
      "prefix": "uniparc",
      "provider_url": "https://www.uniprot.org/uniparc/$1",
      "sampleId": "UPI000000000A"
    },
    "n2t": {
      "description": "The UniProt Archive (UniParc) is a  database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.",
      "example": "UPI000000000A",
      "homepage": "http://www.uniprot.org/uniparc/",
      "name": "UniParc through UniProt",
      "namespaceEmbeddedInLui": false,
      "pattern": "^UPI[A-F0-9]{10}$",
      "prefix": "uniparc",
      "provider_url": "http://www.uniprot.org/uniparc/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/uniparc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNIPARC"
    }
  },
  "unipathway.compound": {
    "mappings": {
      "miriam": "unipathway.compound",
      "n2t": "unipathway.compound",
      "prefixcommons": "UNIPATHWAY.COMPOUND"
    },
    "miriam": {
      "deprecated": false,
      "description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds.",
      "homepage": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway",
      "id": "00000551",
      "name": "UniPathway Compound",
      "namespaceEmbeddedInLui": false,
      "pattern": "^UPC\\d{5}$",
      "prefix": "unipathway.compound",
      "provider_url": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1",
      "sampleId": "UPC04349"
    },
    "n2t": {
      "description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds.",
      "example": "UPC04349",
      "homepage": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway",
      "name": "UniPathway Compound at Swiss Institute of Bioinformatics (SIB)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^UPC\\d{5}$",
      "prefix": "unipathway.compound",
      "provider_url": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/unipathway.compound/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNIPATHWAY.COMPOUND"
    }
  },
  "unipathway.reaction": {
    "mappings": {
      "miriam": "unipathway.reaction",
      "n2t": "unipathway.reaction",
      "prefixcommons": "UNIPATHWAY.REACTION"
    },
    "miriam": {
      "deprecated": false,
      "description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.",
      "homepage": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway",
      "id": "00000570",
      "name": "UniPathway Reaction",
      "namespaceEmbeddedInLui": false,
      "pattern": "^UCR\\d{5}$",
      "prefix": "unipathway.reaction",
      "provider_url": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1",
      "sampleId": "UCR00226"
    },
    "n2t": {
      "description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.",
      "example": "UCR00226",
      "homepage": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway",
      "name": "UniPathway Reaction at Swiss Institute of Bioinformatics (SIB)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^UCR\\d{5}$",
      "prefix": "unipathway.reaction",
      "provider_url": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/unipathway.reaction/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNIPATHWAY.REACTION"
    }
  },
  "uniprot": {
    "cellosaurus": {
      "category": "Sequence databases",
      "name": "UniProt knowledgebase",
      "prefix": "UniProtKB",
      "url": "https://www.uniprot.org/uniprot/$1"
    },
    "go": {
      "description": "A central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR database",
      "formatter": "https://www.uniprot.org/uniprot/$1",
      "homepage": "http://www.uniprot.org",
      "name": "Universal Protein Knowledgebase",
      "prefix": "UniProtKB"
    },
    "homepage": "http://www.uniprot.org",
    "mappings": {
      "cellosaurus": "UniProtKB",
      "go": "UniProtKB",
      "miriam": "uniprot",
      "n2t": "uniprot",
      "ncbi": "UniProt",
      "prefixcommons": "UniProtKB",
      "wikidata": "P352"
    },
    "miriam": {
      "deprecated": false,
      "description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information.",
      "homepage": "https://www.uniprot.org/",
      "id": "00000005",
      "name": "UniProt Knowledgebase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$",
      "prefix": "uniprot",
      "provider_url": "http://purl.uniprot.org/uniprot/$1",
      "sampleId": "P0DP23"
    },
    "n2t": {
      "description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information.",
      "example": "P0DP23",
      "homepage": "https://www.uniprot.org/",
      "name": "Universal Protein Resource using Persistent URL system",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$",
      "prefix": "uniprot",
      "provider_url": "https://purl.uniprot.org/uniprot/$1"
    },
    "ncbi": {
      "example": "P12345",
      "homepage": "http://www.uniprot.org",
      "name": "section of the UniProt Knowledgebase, containing annotated records, which include curator-evaluated computational analysis, as well as, information extracted from the literature",
      "prefix": "UniProt"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/uniprot/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UniProtKB"
    },
    "synonyms": [
      "UniProt",
      "UniProtKB",
      "uniprot/swiss-prot",
      "SwissProt",
      "UP"
    ],
    "wikidata": {
      "database": "Q905695",
      "database.homepage": "https://www.uniprot.org/",
      "database.label": "UniProt",
      "format": "https://www.uniprot.org/uniprot/$1",
      "format.rdf": "http://purl.uniprot.org/uniprot/$1",
      "homepage": "http://mygene.info",
      "name": "UniProt protein ID",
      "pattern": "([OPQ][0-9][A-Z0-9]|[A-NR-Z][0-9][A-Z])[A-Z0-9][A-Z0-9][0-9]([A-Z][A-Z0-9][A-Z0-9][0-9])?",
      "prefix": "P352"
    }
  },
  "uniprot.chain": {
    "mappings": {
      "miriam": "uniprot.chain"
    },
    "miriam": {
      "deprecated": false,
      "description": "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein.",
      "homepage": "https://www.uniprot.org",
      "id": "00000739",
      "name": "UniProt Chain",
      "namespaceEmbeddedInLui": false,
      "pattern": "^PRO_[0-9]{10}$",
      "prefix": "uniprot.chain",
      "provider_url": "http://purl.uniprot.org/annotation/$1",
      "sampleId": "PRO_0000016681"
    },
    "synonyms": [
      "UPPRO"
    ]
  },
  "uniprot.disease": {
    "example": "04240",
    "homepage": "https://www.uniprot.org/diseases/",
    "name": "UniProt Diseases",
    "synonyms": [
      "DI"
    ],
    "url": "https://www.uniprot.org/diseases/DI-$1"
  },
  "uniprot.isoform": {
    "mappings": {
      "miriam": "uniprot.isoform",
      "n2t": "uniprot.isoform",
      "prefixcommons": "UNIPROT.ISOFORM"
    },
    "miriam": {
      "deprecated": false,
      "description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.",
      "homepage": "http://www.uniprot.org/uniparc/",
      "id": "00000388",
      "name": "UniProt Isoform",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$",
      "prefix": "uniprot.isoform",
      "provider_url": "http://www.uniprot.org/uniparc/?query=$1",
      "sampleId": "Q5BJF6-3"
    },
    "n2t": {
      "description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.",
      "example": "Q5BJF6-3",
      "homepage": "http://www.uniprot.org/uniparc/",
      "name": "UniProt Isoform through UniParc",
      "namespaceEmbeddedInLui": false,
      "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$",
      "prefix": "uniprot.isoform",
      "provider_url": "http://www.uniprot.org/uniparc/?query=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/uniprot.isoform/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNIPROT.ISOFORM"
    },
    "synonyms": [
      "UPISO"
    ]
  },
  "uniprot.keyword": {
    "example": "KW-1273",
    "go": {
      "formatter": "https://www.uniprot.org/keywords/$1",
      "homepage": "http://www.uniprot.org/keywords/",
      "name": "UniProt Knowledgebase keywords",
      "prefix": "UniProtKB-KW",
      "synonyms": [
        "SP_KW"
      ]
    },
    "mappings": {
      "go": "UniProtKB-KW"
    },
    "name": "UniProt Keywords",
    "synonyms": [
      "UniProtKB-KW"
    ],
    "url": "https://www.uniprot.org/keywords/$1"
  },
  "uniprot.location": {
    "example": "0002",
    "go": {
      "formatter": "http://www.uniprot.org/locations/$1",
      "homepage": "https://www.uniprot.org/locations/",
      "name": "UniProt Knowledgebase Subcellular Location vocabulary",
      "prefix": "UniProtKB-SubCell",
      "synonyms": [
        "SP_SL"
      ]
    },
    "homepage": "https://www.uniprot.org/locations/",
    "mappings": {
      "go": "UniProtKB-SubCell"
    },
    "name": "UniProt Subcellular Locations",
    "pattern": "^\\d+$",
    "synonyms": [
      "UPLOC",
      "UniProtKB-SubCell"
    ],
    "url": "https://www.uniprot.org/locations/SL-$1"
  },
  "uniprot.var": {
    "example": "VAR_068078",
    "name": "UniProt Variants",
    "pattern": "^VAR_\\d+$",
    "synonyms": [
      "UniProtKB_VAR"
    ],
    "url": "https://web.expasy.org/variant_pages/$1.html"
  },
  "unirule": {
    "description": "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites.",
    "example": "UR000124451",
    "go": {
      "formatter": "https://www.uniprot.org/unirule/$1",
      "homepage": "https://www.uniprot.org/unirule/",
      "name": "Manually curated rules for automatic annotation of UniProtKB unreviewed entries",
      "prefix": "UniRule"
    },
    "homepage": "https://www.uniprot.org/unirule/",
    "mappings": {
      "go": "UniRule"
    },
    "name": "UniRule",
    "url": "https://www.uniprot.org/unirule/$1"
  },
  "unists": {
    "mappings": {
      "miriam": "unists",
      "n2t": "unists",
      "ncbi": "UniSTS",
      "prefixcommons": "UNISTS"
    },
    "miriam": {
      "deprecated": false,
      "description": "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences.",
      "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists",
      "id": "00000162",
      "name": "UniSTS",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "unists",
      "provider_url": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1",
      "sampleId": "456789"
    },
    "n2t": {
      "description": "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences.",
      "example": "456789",
      "homepage": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists",
      "name": "UniSTS at NCBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "unists",
      "provider_url": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1"
    },
    "ncbi": {
      "example": "486599",
      "name": "Database of Sequence Tagged Sites",
      "prefix": "UniSTS"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/unists/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNISTS"
    }
  },
  "unite": {
    "mappings": {
      "miriam": "unite",
      "n2t": "unite",
      "ncbi": "UNITE",
      "prefixcommons": "UNITE"
    },
    "miriam": {
      "deprecated": false,
      "description": "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa.",
      "homepage": "http://unite.ut.ee/",
      "id": "00000352",
      "name": "Unite",
      "namespaceEmbeddedInLui": false,
      "pattern": "^UDB\\d{6}$",
      "prefix": "unite",
      "provider_url": "http://unite.ut.ee/bl_forw.php?nimi=$1",
      "sampleId": "UDB000691"
    },
    "n2t": {
      "description": "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa.",
      "example": "UDB000691",
      "homepage": "http://unite.ut.ee/",
      "name": "Unite at University of Tartu",
      "namespaceEmbeddedInLui": false,
      "pattern": "^UDB\\d{6}$",
      "prefix": "unite",
      "provider_url": "http://unite.ut.ee/bl_forw.php?nimi=$1"
    },
    "ncbi": {
      "example": "UDB000157",
      "homepage": "http://unite.ut.ee/index.php",
      "name": "Molecular database for the identification of fungi",
      "prefix": "UNITE"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/unite/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNITE"
    }
  },
  "unpd": {
    "homepage": "http://pkuxxj.pku.edu.cn/UNPD/",
    "name": "Universal Natural Products Database",
    "references": [
      "http://bioinf-applied.charite.de/supernatural_new/index.php?site=vendor_info&id=Universal%20Natural%20Products%20Database",
      "https://pharmacognosy.in/the-universal-natural-products-database-unpd/",
      "https://pubs.acs.org/doi/abs/10.1021/acs.jnatprod.6b01093",
      "https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0062839"
    ]
  },
  "uo": {
    "bioportal": {
      "name": "Units of Measurement Ontology",
      "prefix": "UO"
    },
    "mappings": {
      "bioportal": "UO",
      "miriam": "uo",
      "n2t": "uo",
      "obofoundry": "uo",
      "ols": "uo",
      "prefixcommons": "UO"
    },
    "miriam": {
      "deprecated": false,
      "description": "Ontology of standardized units",
      "homepage": "http://bioportal.bioontology.org/ontologies/UO",
      "id": "00000136",
      "name": "Unit Ontology",
      "namespaceEmbeddedInLui": true,
      "pattern": "^UO:\\d{7}?",
      "prefix": "uo",
      "provider_url": "http://purl.bioontology.org/ontology/UO/UO:$1",
      "sampleId": "0000080"
    },
    "n2t": {
      "description": "Ontology of standardized units",
      "example": "0000080",
      "homepage": "http://bioportal.bioontology.org/ontologies/UO",
      "name": "Unit Ontology through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^UO:\\d{7}?",
      "prefix": "uo",
      "provider_url": "http://purl.bioontology.org/ontology/UO/UO:$1"
    },
    "obofoundry": {
      "contact": "g.gkoutos@gmail.com",
      "contact.label": "George Gkoutos",
      "deprecated": false,
      "description": "Metrical units for use in conjunction with PATO",
      "download.owl": "http://purl.obolibrary.org/obo/uo.owl",
      "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
      "license": "CC-BY",
      "name": "Units of measurement ontology",
      "prefix": "uo"
    },
    "ols": {
      "description": "Metrical units for use in conjunction with PATO",
      "download": "http://purl.obolibrary.org/obo/uo.owl",
      "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
      "name": "Units of measurement ontology",
      "prefix": "uo",
      "version": "2020-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/uo/releases/2020-03-10/uo.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/UO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "UO"
    }
  },
  "upa": {
    "bioportal": {
      "name": "Unipathway",
      "prefix": "UPA"
    },
    "download_obo": "https://raw.githubusercontent.com/geneontology/unipathway/master/upa.obo",
    "example": "UCR00513",
    "go": {
      "description": "UniPathway is a a metabolic door to UniProtKB/Swiss-Prot, a curated resource of metabolic pathways for the UniProtKB/Swiss-Prot knowledgebase.",
      "formatter": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1",
      "homepage": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway",
      "name": "UniPathway",
      "prefix": "UniPathway"
    },
    "mappings": {
      "bioportal": "UPA",
      "go": "UniPathway",
      "obofoundry": "upa",
      "ols": "upa",
      "prefixcommons": "UNIPATHWAY",
      "uniprot": "UniPathway",
      "uniprot.database": "UniPathway"
    },
    "obofoundry": {
      "contact": "Anne.Morgat@sib.swiss",
      "contact.label": "Anne Morgat",
      "deprecated": false,
      "description": "A manually curated resource for the representation and annotation of metabolic pathways",
      "download.obo": "http://purl.obolibrary.org/obo/upa.obo",
      "download.owl": "http://purl.obolibrary.org/obo/upa.owl",
      "homepage": "https://github.com/geneontology/unipathway",
      "license": "CC-BY",
      "name": "Unipathway",
      "prefix": "upa"
    },
    "ols": {
      "description": "A manually curated resource for the representation and annotation of metabolic pathways",
      "download": "http://purl.obolibrary.org/obo/upa.owl",
      "homepage": "https://github.com/geneontology/unipathway",
      "name": "Unipathway",
      "prefix": "upa",
      "version": "2018-12-12",
      "version.iri": "http://purl.obolibrary.org/obo/upa/releases/2018-12-12/upa.owl"
    },
    "pattern": "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$",
    "prefixcommons": {
      "formatter": "http://identifiers.org/unipathway/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "UNIPATHWAY"
    },
    "synonyms": [
      "UPa",
      "unipathway"
    ],
    "uniprot": {
      "category": "Enzyme and pathway databases",
      "formatter": "http://www.unipathway.org?upid=%s&entryac=%u",
      "identifier": "170",
      "link_is_explicit": "true",
      "name": "UniPathway: a resource for the exploration and annotation of metabolic pathways",
      "prefix": "UniPathway"
    },
    "wikidata": {
      "database": "Q85719315"
    }
  },
  "upheno": {
    "bioportal": {
      "name": "Combined Phenotype Ontology",
      "prefix": "UPHENO"
    },
    "download_owl": "https://github.com/obophenotype/upheno/blob/master/upheno.owl",
    "mappings": {
      "bioportal": "UPHENO",
      "obofoundry": "upheno",
      "ols": "upheno",
      "prefixcommons": "UPHENO"
    },
    "name": "Unified Phenotype Ontology",
    "obofoundry": {
      "contact": "vasilevs@ohsu.edu",
      "contact.label": "Nicole Vasilevsky",
      "deprecated": false,
      "description": "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.",
      "download.owl": "http://purl.obolibrary.org/obo/upheno.owl",
      "homepage": "https://github.com/obophenotype/upheno",
      "license": "CC0",
      "name": "Unified phenotype ontology (uPheno)",
      "prefix": "upheno"
    },
    "ols": {
      "description": "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.",
      "download": "http://purl.obolibrary.org/obo/upheno.owl",
      "homepage": "https://github.com/obophenotype/upheno",
      "name": "Unified phenotype ontology (uPheno)",
      "prefix": "upheno",
      "version": "2017-10-31"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/UPHENO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "UPHENO"
    }
  },
  "uspto": {
    "mappings": {
      "miriam": "uspto",
      "n2t": "uspto",
      "prefixcommons": "USPTO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement.",
      "homepage": "http://patft.uspto.gov/netahtml/PTO/index.html",
      "id": "00000538",
      "name": "USPTO",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(D|PP|R|T|H|X|AI)?\\d+$",
      "prefix": "uspto",
      "provider_url": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1",
      "sampleId": "4145692"
    },
    "n2t": {
      "description": "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement.",
      "example": "4145692",
      "homepage": "http://patft.uspto.gov/netahtml/PTO/index.html",
      "name": "USPTO patents at USPTO",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(D|PP|R|T|H|X|AI)?\\d+$",
      "prefix": "uspto",
      "provider_url": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1"
    },
    "name": "United States Patent and Trademark Office",
    "prefixcommons": {
      "formatter": "http://identifiers.org/uspto/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "USPTO"
    }
  },
  "validatordb": {
    "example": "2h6o",
    "mappings": {
      "miriam": "validatordb",
      "n2t": "validatordb",
      "prefixcommons": "VALIDATORDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "Database of validation results for ligands and non-standard residues in the Protein Data Bank.",
      "homepage": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/",
      "id": "00000633",
      "name": "ValidatorDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9\\/]+$",
      "prefix": "validatordb",
      "provider_url": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/$1",
      "sampleId": "ByStructure/2h6o"
    },
    "n2t": {
      "description": "Database of validation results for ligands and non-standard residues in the Protein Data Bank.",
      "example": "ByStructure/2h6o",
      "homepage": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/",
      "name": "ValidatorDB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z0-9\\/]+$",
      "prefix": "validatordb",
      "provider_url": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/validatordb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VALIDATORDB"
    },
    "provides": "pdb",
    "type": "provider",
    "url": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1"
  },
  "vandf": {
    "biolink": {
      "formatter": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/VANDF/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "VANDF"
    },
    "bioportal": {
      "name": "Veterans Health Administration National Drug File",
      "prefix": "VANDF"
    },
    "example": "4019477",
    "mappings": {
      "biolink": "VANDF",
      "bioportal": "VANDF"
    },
    "name": "Veterans Administration National Drug File",
    "references": [
      "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2244318/"
    ]
  },
  "vario": {
    "banana": "VariO",
    "bioportal": {
      "name": "Variation Ontology",
      "prefix": "VARIO"
    },
    "example": "0376",
    "mappings": {
      "bioportal": "VARIO",
      "miriam": "vario",
      "n2t": "vario",
      "obofoundry": "vario",
      "ols": "vario",
      "prefixcommons": "VARIO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level.",
      "homepage": "http://www.variationontology.org/",
      "id": "00000406",
      "name": "VariO",
      "namespaceEmbeddedInLui": true,
      "pattern": "^VariO:\\d+$",
      "prefix": "vario",
      "provider_url": "http://www.ontobee.org/search?ontology=VariO&keywords=VariO_$1&submit=Search+terms",
      "sampleId": "0294"
    },
    "n2t": {
      "description": "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level.",
      "example": "0294",
      "homepage": "http://bioportal.bioontology.org/ontologies/VARIO",
      "name": "VariO through BioPortal",
      "namespaceEmbeddedInLui": true,
      "pattern": "^VariO:\\d+$",
      "prefix": "vario",
      "provider_url": "http://purl.bioontology.org/ontology/VARIO/VariO:$1"
    },
    "name": "Variation Ontology",
    "namespaceEmbeddedInLui": false,
    "obofoundry": {
      "contact": "mauno.vihinen@med.lu.se",
      "contact.label": "Mauno Vihinen",
      "deprecated": false,
      "description": "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.",
      "download.owl": "http://purl.obolibrary.org/obo/vario.owl",
      "homepage": "http://variationontology.org",
      "name": "Variation Ontology",
      "prefix": "vario"
    },
    "ols": {
      "description": "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.",
      "download": "http://purl.obolibrary.org/obo/vario.owl",
      "homepage": "http://variationontology.org",
      "name": "Variation Ontology",
      "prefix": "vario",
      "version": "2018-11-09",
      "version.iri": "http://purl.obolibrary.org/obo/vario/2018-11-09/vario.owl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/VARIO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "VARIO"
    }
  },
  "vbase2": {
    "mappings": {
      "miriam": "vbase2",
      "n2t": "vbase2",
      "ncbi": "VBASE2",
      "prefixcommons": "VBASE2"
    },
    "miriam": {
      "deprecated": false,
      "description": "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.",
      "homepage": "http://www.vbase2.org/vbase2.php",
      "id": "00000320",
      "name": "Vbase2",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "vbase2",
      "provider_url": "http://www.vbase2.org/vgene.php?id=$1",
      "sampleId": "humIGHV025"
    },
    "n2t": {
      "description": "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.",
      "example": "humIGHV025",
      "homepage": "http://www.vbase2.org/vbase2.php",
      "name": "Vbase2 at German Research Centre for Biotechnology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "vbase2",
      "provider_url": "http://www.vbase2.org/vgene.php?id=$1"
    },
    "ncbi": {
      "example": "humIGKV165",
      "homepage": "http://www.vbase2.org/",
      "name": "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse",
      "prefix": "VBASE2"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/vbase2/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VBASE2"
    }
  },
  "vbrc": {
    "mappings": {
      "miriam": "vbrc",
      "n2t": "vbrc",
      "prefixcommons": "VBRC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.",
      "homepage": "http://vbrc.org/",
      "id": "00000448",
      "name": "VBRC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "vbrc",
      "provider_url": "http://vbrc.org/gene_detail.asp?gene_id=$1",
      "sampleId": "35742"
    },
    "n2t": {
      "description": "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.",
      "example": "35742",
      "homepage": "http://vbrc.org/",
      "name": "VBRC at University of Alabama",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "vbrc",
      "provider_url": "http://vbrc.org/gene_detail.asp?gene_id=$1"
    },
    "name": "Viral Bioinformatics Resource Center",
    "prefixcommons": {
      "formatter": "http://identifiers.org/vbrc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VBRC"
    }
  },
  "vectorbase": {
    "mappings": {
      "miriam": "vectorbase",
      "n2t": "vectorbase",
      "ncbi": "VectorBase",
      "prefixcommons": "VECTORBASE"
    },
    "miriam": {
      "deprecated": false,
      "description": "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.",
      "homepage": "https://www.vectorbase.org/",
      "id": "00000232",
      "name": "VectorBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\D{4}\\d{6}(\\-\\D{2})?$",
      "prefix": "vectorbase",
      "provider_url": "https://www.vectorbase.org/search/site/$1?&site=\"Genome\"",
      "sampleId": "ISCW007415"
    },
    "n2t": {
      "description": "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.",
      "example": "ISCW007415",
      "homepage": "https://www.vectorbase.org/",
      "name": "Vectorbase at EMBL-EBI",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\D{4}\\d{6}(\\-\\D{2})?$",
      "prefix": "vectorbase",
      "provider_url": "https://www.vectorbase.org/search/site/$1?&site=\"Genome\""
    },
    "ncbi": {
      "example": "ENSANGG00000007825",
      "homepage": "http://www.vectorbase.org/index.php",
      "name": "Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens",
      "prefix": "VectorBase"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/vectorbase/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VECTORBASE"
    }
  },
  "vega": {
    "example": "OTTHUMG00000169812",
    "homepage": "https://vega.archive.ensembl.org/index.html",
    "name": "Vertebrate Genome Annotation Database",
    "synonyms": [
      "VEGA"
    ]
  },
  "vegbank": {
    "mappings": {
      "miriam": "vegbank"
    },
    "miriam": {
      "deprecated": false,
      "description": "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. ",
      "homepage": "http://vegbank.org/",
      "id": "00000723",
      "name": "VegBank",
      "namespaceEmbeddedInLui": false,
      "pattern": "^VB\\.[A-Za-z][A-Za-z]\\..*$",
      "prefix": "vegbank",
      "provider_url": "http://vegbank.org/cite/$1",
      "sampleId": "VB.Ob.3736.GRSM125"
    }
  },
  "vfb": {
    "mappings": {
      "miriam": "vfb",
      "n2t": "vfb"
    },
    "miriam": {
      "deprecated": false,
      "description": "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster.",
      "homepage": "https://VirtualFlyBrain.org",
      "id": "00000680",
      "name": "Virtual Fly Brain",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9a-zA-Z]{8}$",
      "prefix": "vfb",
      "provider_url": "http://virtualflybrain.org/reports/$1",
      "sampleId": "00000001"
    },
    "n2t": {
      "description": "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster.",
      "example": "00000001",
      "homepage": "https://VirtualFlyBrain.org",
      "name": "Virtual Fly Brain",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9a-zA-Z]{8}$",
      "prefix": "vfb",
      "provider_url": "http://virtualflybrain.org/reports/$1"
    }
  },
  "vfdb.gene": {
    "mappings": {
      "miriam": "vfdb.gene",
      "n2t": "vfdb.gene",
      "prefixcommons": "VFDB.GENE"
    },
    "miriam": {
      "deprecated": false,
      "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.",
      "homepage": "http://www.mgc.ac.cn/VFs/",
      "id": "00000472",
      "name": "VFDB Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "vfdb.gene",
      "provider_url": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1",
      "sampleId": "VFG2154"
    },
    "n2t": {
      "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.",
      "example": "VFG2154",
      "homepage": "http://www.mgc.ac.cn/VFs/",
      "name": "VFDB Gene at Institute of Pathogen Biology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "vfdb.gene",
      "provider_url": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/vfdb.gene/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VFDB.GENE"
    }
  },
  "vfdb.genus": {
    "mappings": {
      "miriam": "vfdb.genus",
      "n2t": "vfdb.genus",
      "prefixcommons": "VFDB.GENUS"
    },
    "miriam": {
      "deprecated": false,
      "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.",
      "homepage": "http://www.mgc.ac.cn/VFs/",
      "id": "00000471",
      "name": "VFDB Genus",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "vfdb.genus",
      "provider_url": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1",
      "sampleId": "Chlamydia"
    },
    "n2t": {
      "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.",
      "example": "Chlamydia",
      "homepage": "http://www.mgc.ac.cn/VFs/",
      "name": "VFDB Genus at Institute of Pathogen Biology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+$",
      "prefix": "vfdb.genus",
      "provider_url": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/vfdb.genus/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VFDB.GENUS"
    }
  },
  "vgnc": {
    "cellosaurus": {
      "category": "Organism-specific databases",
      "homepage": "https://vertebrate.genenames.org/",
      "name": "Vertebrate Gene Nomenclature Committee Database",
      "prefix": "VGNC",
      "url": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/VGNC:$1"
    },
    "mappings": {
      "cellosaurus": "VGNC",
      "miriam": "vgnc",
      "ncbi": "VGNC",
      "uniprot": "VGNC",
      "uniprot.database": "VGNC"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee.",
      "homepage": "https://vertebrate.genenames.org",
      "id": "00000765",
      "name": "VGNC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^((VGNC|vgnc):)?\\d{1,9}$",
      "prefix": "vgnc",
      "provider_url": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1",
      "sampleId": "VGNC:3792"
    },
    "ncbi": {
      "example": "VGNC:4927",
      "homepage": "http://vertebrate.genenames.org/data/gene-symbol-report/#!/",
      "name": "Vertebrate Gene Nomenclature Committee",
      "prefix": "VGNC"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/%s",
      "identifier": "226",
      "link_is_explicit": "true",
      "name": "Vertebrate Gene Nomenclature Database",
      "prefix": "VGNC"
    }
  },
  "vhog": {
    "bioportal": {
      "name": "Vertebrate Homologous Organ Group Ontology",
      "prefix": "VHOG"
    },
    "download_obo": "ftp://ftp.bgee.org/general/ontologies/vHOG.obo",
    "example": "0000411",
    "mappings": {
      "bioportal": "VHOG",
      "obofoundry": "vhog",
      "prefixcommons": "VHOG"
    },
    "name": "Vertebrate Homologous Organ Group Ontology",
    "obofoundry": {
      "deprecated": true,
      "download.owl": "http://purl.obolibrary.org/obo/vhog.owl",
      "name": "Vertebrate Homologous Ontology Group Ontology",
      "prefix": "vhog"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/VHOG_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "VHOG"
    },
    "synonyms": [
      "VHOG_RETIRED"
    ]
  },
  "viaf": {
    "mappings": {
      "miriam": "viaf",
      "n2t": "viaf"
    },
    "miriam": {
      "deprecated": false,
      "description": "The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web.",
      "homepage": "http://viaf.org",
      "id": "00000685",
      "name": "Virtual International Authority File",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "viaf",
      "provider_url": "http://viaf.org/viaf/$1",
      "sampleId": "75121530"
    },
    "n2t": {
      "description": "The VIAF&#xAE; (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web.",
      "example": "75121530",
      "homepage": "http://viaf.org",
      "name": "Virtual International Authority File",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "viaf",
      "provider_url": "http://viaf.org/viaf/$1"
    }
  },
  "vido": {
    "bioportal": {
      "name": "Virus Infectious Disease Ontology",
      "prefix": "VIDO"
    },
    "mappings": {
      "bioportal": "VIDO",
      "ols": "vido"
    },
    "ols": {
      "contact": "johnbeverley2021@u.northwestern.edu",
      "description": "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.",
      "download": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-virus/master/ontology/vido.owl",
      "homepage": "https://github.com/infectious-disease-ontology-extensions/ido-virus",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "The Virus Infectious Disease Ontology",
      "prefix": "vido",
      "version": "2020-08-25",
      "version.iri": "http://purl.obolibrary.org/obo/2020-25-08/vido.owl"
    }
  },
  "vipr": {
    "mappings": {
      "miriam": "vipr",
      "n2t": "vipr",
      "ncbi": "ViPR",
      "prefixcommons": "VIPR"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures,  and host factor data. This collection references viral strain information.",
      "homepage": "http://www.viprbrc.org/brc/home.do?decorator=vipr",
      "id": "00000407",
      "name": "ViPR Strain",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z 0-9]+$",
      "prefix": "vipr",
      "provider_url": "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena",
      "sampleId": "BeAn 70563"
    },
    "n2t": {
      "description": "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures,  and host factor data. This collection references viral strain information.",
      "example": "BeAn 70563",
      "homepage": "http://www.viprbrc.org/brc/home.do?decorator=vipr",
      "name": "ViPR Strain at J. Craig Venter Institute",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z 0-9]+$",
      "prefix": "vipr",
      "provider_url": "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena"
    },
    "ncbi": {
      "example": "HRV-A34_p1058_sR263_2008",
      "homepage": "http://www.viprbrc.org/brc/home.do?decorator=vipr",
      "name": "Virus Pathogen Resource",
      "prefix": "ViPR"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/vipr/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VIPR"
    }
  },
  "viralzone": {
    "mappings": {
      "miriam": "viralzone",
      "n2t": "viralzone",
      "prefixcommons": "VIRALZONE"
    },
    "miriam": {
      "deprecated": false,
      "description": "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.",
      "homepage": "http://www.expasy.org/viralzone/",
      "id": "00000449",
      "name": "ViralZone",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "viralzone",
      "provider_url": "http://viralzone.expasy.org/all_by_protein/$1.html",
      "sampleId": "992"
    },
    "n2t": {
      "description": "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.",
      "example": "992",
      "homepage": "http://www.expasy.org/viralzone/",
      "name": "ViralZone at SIB",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "viralzone",
      "provider_url": "http://viralzone.expasy.org/all_by_protein/$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/viralzone/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VIRALZONE"
    }
  },
  "virsirna": {
    "mappings": {
      "miriam": "virsirna",
      "n2t": "virsirna",
      "prefixcommons": "VIRSIRNA"
    },
    "miriam": {
      "deprecated": false,
      "description": "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.",
      "homepage": "http://crdd.osdd.net/servers/virsirnadb",
      "id": "00000249",
      "name": "VIRsiRNA",
      "namespaceEmbeddedInLui": false,
      "pattern": "^virsi\\d+$",
      "prefix": "virsirna",
      "provider_url": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1",
      "sampleId": "virsi1909"
    },
    "n2t": {
      "description": "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.",
      "example": "virsi1909",
      "homepage": "http://crdd.osdd.net/servers/virsirnadb",
      "name": "VIRsiRNA at Institute of Microbial Technology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^virsi\\d+$",
      "prefix": "virsirna",
      "provider_url": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/virsirna/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VIRSIRNA"
    }
  },
  "vmc": {
    "biolink": {
      "formatter": "https://github.com/ga4gh/vr-spec/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "VMC"
    },
    "deprecated": true,
    "mappings": {
      "biolink": "VMC"
    },
    "name": "Variation Modelling Collaboration",
    "references": [
      "https://docs.google.com/document/d/12E8WbQlvfZWk5NrxwLytmympPby6vsv60RxCeD5wc1E/edit#heading=h.67hbe76b6a4z",
      "https://github.com/ga4gh/vr-spec"
    ]
  },
  "vmhgene": {
    "mappings": {
      "miriam": "vmhgene"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.",
      "homepage": "https://www.vmh.life/",
      "id": "00000774",
      "name": "VMH Gene",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[0-9]+\\.[0-9]+",
      "prefix": "vmhgene",
      "provider_url": "https://www.vmh.life/#gene/$1",
      "sampleId": "8639.1"
    }
  },
  "vmhmetabolite": {
    "mappings": {
      "miriam": "vmhmetabolite",
      "n2t": "vmhmetabolite",
      "prefixcommons": "VMHMETABOLITE"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.",
      "homepage": "https://www.vmh.life/",
      "id": "00000636",
      "name": "VMH metabolite",
      "namespaceEmbeddedInLui": false,
      "pattern": "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+",
      "prefix": "vmhmetabolite",
      "provider_url": "https://www.vmh.life/#metabolite/$1",
      "sampleId": "h2o"
    },
    "n2t": {
      "description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.",
      "example": "h2o",
      "homepage": "http://vmh.uni.lu",
      "name": "VMH metabolite",
      "namespaceEmbeddedInLui": false,
      "pattern": "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+",
      "prefix": "vmhmetabolite",
      "provider_url": "http://vmh.uni.lu/#metabolite/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/vmhmetabolite/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VMHMETABOLITE"
    }
  },
  "vmhreaction": {
    "mappings": {
      "miriam": "vmhreaction",
      "n2t": "vmhreaction",
      "prefixcommons": "VMHREACTION"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.",
      "homepage": "https://www.vmh.life/",
      "id": "00000640",
      "name": "VMH reaction",
      "namespaceEmbeddedInLui": false,
      "pattern": "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+",
      "prefix": "vmhreaction",
      "provider_url": "https://www.vmh.life/#reaction/$1",
      "sampleId": "HEX1"
    },
    "n2t": {
      "description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.",
      "example": "HEX1",
      "homepage": "https://vmh.uni.lu",
      "name": "VMH reaction",
      "namespaceEmbeddedInLui": false,
      "pattern": "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+",
      "prefix": "vmhreaction",
      "provider_url": "https://vmh.uni.lu/#reaction/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/vmhreaction/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "VMHREACTION"
    }
  },
  "vo": {
    "bioportal": {
      "name": "Vaccine Ontology",
      "prefix": "VO"
    },
    "mappings": {
      "bioportal": "VO",
      "obofoundry": "vo",
      "ols": "vo",
      "prefixcommons": "VO"
    },
    "obofoundry": {
      "contact": "yongqunh@med.umich.edu",
      "contact.label": "Yongqunh He",
      "deprecated": false,
      "description": "VO is a biomedical ontology in the domain of vaccine and vaccination.",
      "download.owl": "http://purl.obolibrary.org/obo/vo.owl",
      "homepage": "http://www.violinet.org/vaccineontology",
      "license": "CC-BY",
      "name": "Vaccine Ontology",
      "prefix": "vo"
    },
    "ols": {
      "description": "The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities.",
      "download": "http://purl.obolibrary.org/obo/vo.owl",
      "homepage": "http://www.violinet.org/vaccineontology",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "Vaccine Ontology",
      "prefix": "vo",
      "version": "1.1.165"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/VO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "VO"
    }
  },
  "void": {
    "example": "feature",
    "homepage": "http://vocab.deri.ie/void",
    "mappings": {
      "prefixcommons": "void"
    },
    "name": "Vocabulary of Interlinked Datasets",
    "prefixcommons": {
      "formatter": "http://rdfs.org/ns/void#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "void"
    },
    "url": "http://rdfs.org/ns/void#$1"
  },
  "vsao": {
    "bioportal": {
      "name": "Vertebrate Skeletal Anatomy Ontology",
      "prefix": "VSAO"
    },
    "mappings": {
      "bioportal": "VSAO",
      "obofoundry": "vsao",
      "prefixcommons": "VSAO"
    },
    "name": "Vertebrate Skeletal Anatomy Ontology",
    "obofoundry": {
      "contact": "wasila.dahdul@usd.edu",
      "contact.label": "Wasila Dahdul",
      "deprecated": true,
      "description": "Vertebrate skeletal anatomy ontology.",
      "download.owl": "http://purl.obolibrary.org/obo/vsao.owl",
      "homepage": "https://www.nescent.org/phenoscape/Main_Page",
      "name": "Vertebrate Skeletal Anatomy Ontology-",
      "prefix": "vsao"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/VSAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "VSAO"
    },
    "synonyms": [
      "VSAO_RETIRED"
    ]
  },
  "vsdb": {
    "example": "1868",
    "homepage": "https://sitem.herts.ac.uk/aeru/vsdb",
    "name": "Veterinary Substances DataBase",
    "url": "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm"
  },
  "vt": {
    "bioportal": {
      "name": "Vertebrate Trait Ontology",
      "prefix": "VT"
    },
    "example": "0000685",
    "mappings": {
      "bioportal": "VT",
      "obofoundry": "vt",
      "ols": "vt",
      "prefixcommons": "VT"
    },
    "obofoundry": {
      "contact": "caripark@iastate.edu",
      "contact.label": "Carissa Park",
      "deprecated": false,
      "description": "An ontology of traits covering vertebrates",
      "download.owl": "http://purl.obolibrary.org/obo/vt.owl",
      "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
      "license": "CC BY 4.0",
      "name": "Vertebrate trait ontology",
      "prefix": "vt"
    },
    "ols": {
      "description": "An ontology of traits covering vertebrates",
      "download": "http://purl.obolibrary.org/obo/vt.owl",
      "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
      "name": "Vertebrate trait ontology",
      "prefix": "vt",
      "version": "2019-06-07"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/VT_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "VT"
    }
  },
  "vto": {
    "bioportal": {
      "name": "Vertebrate Taxonomy Ontology",
      "prefix": "VTO"
    },
    "example": "9008500",
    "mappings": {
      "bioportal": "VTO",
      "obofoundry": "vto",
      "ols": "vto",
      "prefixcommons": "VTO"
    },
    "obofoundry": {
      "contact": "balhoff@renci.org",
      "contact.label": "Jim Balhoff",
      "deprecated": false,
      "description": "Comprehensive hierarchy of extinct and extant vertebrate taxa.",
      "download.obo": "http://purl.obolibrary.org/obo/vto.obo",
      "download.owl": "http://purl.obolibrary.org/obo/vto.owl",
      "homepage": "https://github.com/phenoscape/vertebrate-taxonomy-ontology",
      "license": "CC-0",
      "name": "Vertebrate Taxonomy Ontology",
      "prefix": "vto"
    },
    "ols": {
      "description": "Comprehensive hierarchy of extinct and extant vertebrate taxa.",
      "download": "http://purl.obolibrary.org/obo/vto.owl",
      "homepage": "https://github.com/phenoscape/vertebrate-taxonomy-ontology",
      "license": "http://creativecommons.org/publicdomain/zero/1.0/",
      "name": "Vertebrate Taxonomy Ontology",
      "prefix": "vto",
      "version": "2020-11-13",
      "version.iri": "http://purl.obolibrary.org/obo/vto/2020-11-13/vto.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/VTO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "VTO"
    }
  },
  "vuid": {
    "name": "Veterans Health Administration (VHA) unique identifier",
    "references": [
      "https://academic.oup.com/jamia/article/17/4/432/866953"
    ]
  },
  "vz": {
    "example": "886",
    "go": {
      "formatter": "http://viralzone.expasy.org/all_by_protein/$1.html",
      "homepage": "http://viralzone.expasy.org/",
      "name": "ViralZone",
      "prefix": "VZ"
    },
    "mappings": {
      "go": "VZ"
    },
    "name": "ViralZone",
    "url": "https://viralzone.expasy.org/$1",
    "wikidata": {
      "database": "Q15674507"
    }
  },
  "wb": {
    "biolink": {
      "formatter": "http://bio2rdf.org/wormbase_vocabulary$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "WBVocab"
    },
    "go": {
      "formatter": "http://www.wormbase.org/get?name=$1",
      "homepage": "http://www.wormbase.org/",
      "name": "WormBase database of nematode biology",
      "prefix": "WB_REF"
    },
    "mappings": {
      "biolink": "WBVocab",
      "go": "WB_REF",
      "miriam": "wb",
      "n2t": "wb",
      "prefixcommons": "WB"
    },
    "miriam": {
      "deprecated": false,
      "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities.",
      "homepage": "https://www.wormbase.org/",
      "id": "00000027",
      "name": "WormBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^WB[A-Z][a-z]+\\d+$",
      "prefix": "wb",
      "provider_url": "https://www.wormbase.org/get?name=$1",
      "sampleId": "WBGene00000001"
    },
    "n2t": {
      "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities.",
      "example": "WBGene00000001",
      "homepage": "https://www.wormbase.org/",
      "name": "WormBase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^WB[A-Z][a-z]+\\d+$",
      "prefix": "wb",
      "provider_url": "https://www.wormbase.org/get?name=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/wb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "WB"
    },
    "synonyms": [
      "WB_REF"
    ]
  },
  "wb.rnai": {
    "mappings": {
      "miriam": "wb.rnai",
      "n2t": "wb.rnai",
      "prefixcommons": "WB.RNAI"
    },
    "miriam": {
      "deprecated": false,
      "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.",
      "homepage": "https://www.wormbase.org/",
      "id": "00000466",
      "name": "WormBase RNAi",
      "namespaceEmbeddedInLui": false,
      "pattern": "^WBRNAi\\d{8}$",
      "prefix": "wb.rnai",
      "provider_url": "https://www.wormbase.org/species/c_elegans/rnai/$1",
      "sampleId": "WBRNAi00086878"
    },
    "n2t": {
      "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.",
      "example": "WBRNAi00086878",
      "homepage": "https://www.wormbase.org/",
      "name": "WormBase RNAi",
      "namespaceEmbeddedInLui": false,
      "pattern": "^WBRNAi\\d{8}$",
      "prefix": "wb.rnai",
      "provider_url": "https://www.wormbase.org/species/c_elegans/rnai/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/wb.rnai/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "WB.RNAI"
    }
  },
  "wbbt": {
    "bioportal": {
      "name": "C. elegans Gross Anatomy Vocabulary",
      "prefix": "WB-BT"
    },
    "example": "0001290",
    "go": {
      "homepage": "http://www.wormbase.org/",
      "name": "C. elegans gross anatomy",
      "prefix": "WBbt"
    },
    "mappings": {
      "bioportal": "WB-BT",
      "go": "WBbt",
      "obofoundry": "wbbt",
      "ols": "wbbt",
      "prefixcommons": "WBBT"
    },
    "obofoundry": {
      "contact": "raymond@caltech.edu",
      "contact.label": "Raymond Lee",
      "deprecated": false,
      "description": "A structured controlled vocabulary of the anatomy of <i>Caenorhabditis elegans</i>.",
      "download.obo": "http://purl.obolibrary.org/obo/wbbt.obo",
      "download.owl": "http://purl.obolibrary.org/obo/wbbt.owl",
      "homepage": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology",
      "license": "CC-BY 4.0",
      "name": "C. elegans Gross Anatomy Ontology",
      "preferredPrefix": "WBbt",
      "prefix": "wbbt"
    },
    "ols": {
      "description": "Ontology about the gross anatomy of the C. elegans",
      "download": "http://purl.obolibrary.org/obo/wbbt.owl",
      "homepage": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "C. elegans Gross Anatomy Ontology",
      "prefix": "wbbt",
      "version": "2021-07-06",
      "version.iri": "http://purl.obolibrary.org/obo/wbbt/releases/2021-07-06/wbbt.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/WBBT_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "WBBT"
    },
    "synonyms": [
      "WBbt"
    ]
  },
  "wbls": {
    "bioportal": {
      "name": "C. elegans Development Vocabulary",
      "prefix": "WB-LS"
    },
    "example": "0000690",
    "go": {
      "formatter": "http://www.wormbase.org/get?name=$1",
      "homepage": "http://www.wormbase.org/",
      "name": "C. elegans development",
      "prefix": "WBls"
    },
    "mappings": {
      "bioportal": "WB-LS",
      "go": "WBls",
      "obofoundry": "wbls",
      "ols": "wbls",
      "prefixcommons": "WBLS"
    },
    "obofoundry": {
      "contact": "cgrove@caltech.edu",
      "contact.label": "Chris Grove",
      "deprecated": false,
      "description": "A structured controlled vocabulary of the development of <i>Caenorhabditis elegans</i>.",
      "download.obo": "http://purl.obolibrary.org/obo/wbls.obo",
      "download.owl": "http://purl.obolibrary.org/obo/wbls.owl",
      "homepage": "https://github.com/obophenotype/c-elegans-development-ontology",
      "license": "CC BY 4.0",
      "name": "C. elegans development ontology",
      "preferredPrefix": "WBls",
      "prefix": "wbls"
    },
    "ols": {
      "description": "Ontology about the development and life stages of the C. elegans",
      "download": "http://purl.obolibrary.org/obo/wbls.owl",
      "homepage": "https://github.com/obophenotype/c-elegans-development-ontology",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "C. elegans Development Ontology",
      "prefix": "wbls",
      "version": "2021-07-06",
      "version.iri": "http://purl.obolibrary.org/obo/wbls/releases/2021-07-06/wbls.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/WBLS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "WBLS"
    },
    "synonyms": [
      "WBls"
    ]
  },
  "wbphenotype": {
    "bioportal": {
      "name": "C. elegans Phenotype Vocabulary",
      "prefix": "WB-PHENOTYPE"
    },
    "example": "0000983",
    "go": {
      "formatter": "http://www.wormbase.org/get?name=$1",
      "homepage": "http://www.wormbase.org/",
      "name": "WormBase phenotype ontology",
      "prefix": "WBPhenotype"
    },
    "mappings": {
      "bioportal": "WB-PHENOTYPE",
      "go": "WBPhenotype",
      "obofoundry": "wbphenotype",
      "ols": "wbphenotype",
      "prefixcommons": "WBPhenotype"
    },
    "obofoundry": {
      "contact": "cgrove@caltech.edu",
      "contact.label": "Chris Grove",
      "deprecated": false,
      "description": "A structured controlled vocabulary of <i>Caenorhabditis elegans</i> phenotypes",
      "download.obo": "http://purl.obolibrary.org/obo/wbphenotype.obo",
      "download.owl": "http://purl.obolibrary.org/obo/wbphenotype.owl",
      "homepage": "https://github.com/obophenotype/c-elegans-phenotype-ontology",
      "license": "CC BY 4.0",
      "name": "C. elegans phenotype",
      "preferredPrefix": "WBPhenotype",
      "prefix": "wbphenotype"
    },
    "ols": {
      "description": "Ontology about C. elegans and other nematode phenotypes",
      "download": "http://purl.obolibrary.org/obo/wbphenotype.owl",
      "homepage": "https://github.com/obophenotype/c-elegans-phenotype-ontology",
      "license": "http://creativecommons.org/licenses/by/4.0/",
      "name": "C elegans Phenotype Ontology",
      "prefix": "wbphenotype",
      "version": "2021-07-06",
      "version.iri": "http://purl.obolibrary.org/obo/wbphenotype/releases/2021-07-06/wbphenotype.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/WBPhenotype_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "WBPhenotype"
    },
    "synonyms": [
      "WBPhenotype"
    ]
  },
  "webelements": {
    "description": "Browser for the periodic table of the elements",
    "example": "chromium",
    "homepage": "https://www.webelements.com/",
    "name": "Web Elements",
    "pattern": "^\\w+$",
    "url": "https://www.webelements.com/$1"
  },
  "wgs84": {
    "biolink": {
      "formatter": "http://www.w3.org/2003/01/geo/wgs84_pos$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "wgs"
    },
    "homepage": "https://www.w3.org/2003/01/geo/wgs84_pos",
    "mappings": {
      "biolink": "wgs"
    },
    "name": "WGS84 Geo Positioning",
    "url": "http://www.w3.org/2003/01/geo/wgs84_pos#$1"
  },
  "wikidata": {
    "biolink": {
      "formatter": "https://www.wikidata.org/wiki/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "WIKIDATA"
    },
    "cellosaurus": {
      "category": "Other",
      "homepage": "https://www.wikidata.org/wiki/Wikidata:Main_Page",
      "name": "Wikidata",
      "prefix": "Wikidata",
      "url": "https://www.wikidata.org/wiki/$1"
    },
    "mappings": {
      "biolink": "WIKIDATA",
      "cellosaurus": "Wikidata",
      "miriam": "wikidata",
      "n2t": "wikidata",
      "prefixcommons": "WD_Entity"
    },
    "miriam": {
      "deprecated": false,
      "description": "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic.",
      "homepage": "https://www.wikidata.org/",
      "id": "00000549",
      "name": "Wikidata",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(Q|P)\\d+$",
      "prefix": "wikidata",
      "provider_url": "http://www.wikidata.org/entity/$1",
      "sampleId": "Q2207226"
    },
    "n2t": {
      "description": "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic.",
      "example": "Q2207226",
      "homepage": "https://www.wikidata.org/",
      "name": "Wikidata at Wikimedia Foundation",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Q\\d+$",
      "prefix": "wikidata",
      "provider_url": "https://www.wikidata.org/wiki/$1"
    },
    "prefixcommons": {
      "formatter": "https://www.wikidata.org/wiki/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "WD_Entity"
    },
    "synonyms": [
      "wd",
      "WD_Entity"
    ]
  },
  "wikidata.property": {
    "biolink": {
      "formatter": "https://www.wikidata.org/wiki/Property:$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "WIKIDATA_PROPERTY"
    },
    "example": "P4355",
    "mappings": {
      "biolink": "WIKIDATA_PROPERTY",
      "prefixcommons": "WD_Prop"
    },
    "name": "Wikidata Property",
    "prefixcommons": {
      "formatter": "https://www.wikidata.org/wiki/Property:$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "WD_Prop"
    }
  },
  "wikigenes": {
    "mappings": {
      "miriam": "wikigenes",
      "n2t": "wikigenes",
      "prefixcommons": "WIKIGENES"
    },
    "miriam": {
      "deprecated": false,
      "description": "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.",
      "homepage": "http://www.wikigenes.org/",
      "id": "00000437",
      "name": "WikiGenes",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "wikigenes",
      "provider_url": "http://www.wikigenes.org/e/gene/e/$1.html",
      "sampleId": "3771877"
    },
    "n2t": {
      "description": "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.",
      "example": "3771877",
      "homepage": "http://www.wikigenes.org/",
      "name": "WikiGenes at Massachusetts Institute of Technology",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "wikigenes",
      "provider_url": "http://www.wikigenes.org/e/gene/e/$1.html"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/wikigenes/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "WIKIGENES"
    }
  },
  "wikipathways": {
    "bioportal": {
      "name": "WikiPathways",
      "prefix": "WIKIPATHWAYS"
    },
    "example": "WP732",
    "mappings": {
      "bioportal": "WIKIPATHWAYS",
      "miriam": "wikipathways",
      "n2t": "wikipathways",
      "prefixcommons": "WIKIPATHWAYS",
      "wikidata": "P2410"
    },
    "miriam": {
      "deprecated": false,
      "description": "WikiPathways is a resource providing an open and public collection of  pathway maps created and curated by the community in a Wiki like style.\r\nAll content is under the Creative Commons Attribution 3.0 Unported license.",
      "homepage": "http://www.wikipathways.org/",
      "id": "00000076",
      "name": "WikiPathways",
      "namespaceEmbeddedInLui": false,
      "pattern": "WP\\d{1,5}(\\_r\\d+)?$",
      "prefix": "wikipathways",
      "provider_url": "http://www.wikipathways.org/instance/$1",
      "sampleId": "WP100"
    },
    "n2t": {
      "description": "WikiPathways is a resource providing an open and public collection of  pathway maps created and curated by the community in a Wiki like style. All content is under the Creative Commons Attribution 3.0 Unported license.",
      "example": "WP100",
      "homepage": "http://www.wikipathways.org/",
      "name": "Wikipathways",
      "namespaceEmbeddedInLui": false,
      "pattern": "WP\\d{1,5}(\\_r\\d+)?$",
      "prefix": "wikipathways",
      "provider_url": "http://www.wikipathways.org/instance/$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/wikipathways/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "WIKIPATHWAYS"
    },
    "wikidata": {
      "database": "Q7999828",
      "database.homepage": "https://www.wikipathways.org/",
      "database.label": "WikiPathways",
      "format": "https://www.wikipathways.org/index.php/Pathway:$1",
      "format.rdf": "http://identifiers.org/wikipathways/$1",
      "homepage": "http://www.wikipathways.org",
      "name": "WikiPathways ID",
      "pattern": "WP\\d{1,4}",
      "prefix": "P2410"
    }
  },
  "wikipedia.en": {
    "go": {
      "formatter": "http://en.wikipedia.org/wiki/$1",
      "homepage": "http://en.wikipedia.org/",
      "name": "Wikipedia",
      "prefix": "Wikipedia"
    },
    "mappings": {
      "go": "Wikipedia",
      "miriam": "wikipedia.en",
      "n2t": "wikipedia.en",
      "prefixcommons": "WIKIPEDIA.EN"
    },
    "miriam": {
      "deprecated": false,
      "description": "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.",
      "homepage": "http://wiki.dbpedia.org/",
      "id": "00000384",
      "name": "Wikipedia (En)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z-0-9_]+$",
      "prefix": "wikipedia.en",
      "provider_url": "http://dbpedia.org/page/$1",
      "sampleId": "SM_UB-81"
    },
    "n2t": {
      "description": "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.",
      "example": "SM_UB-81",
      "homepage": "http://wiki.dbpedia.org/",
      "name": "Wikipedia structured content through DBpedia",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Za-z-0-9_]+$",
      "prefix": "wikipedia.en",
      "provider_url": "http://dbpedia.org/page/$1"
    },
    "name": "Wikipedia",
    "prefixcommons": {
      "formatter": "http://identifiers.org/wikipedia.en/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "WIKIPEDIA.EN"
    },
    "synonyms": [
      "wikipedia"
    ]
  },
  "worfdb": {
    "mappings": {
      "miriam": "worfdb",
      "n2t": "worfdb",
      "ncbi": "WorfDB",
      "prefixcommons": "WORFDB"
    },
    "miriam": {
      "deprecated": false,
      "description": "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends).",
      "homepage": "http://worfdb.dfci.harvard.edu/",
      "id": "00000288",
      "name": "Worfdb",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\.\\d+)?",
      "prefix": "worfdb",
      "provider_url": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1",
      "sampleId": "T01B6.1"
    },
    "n2t": {
      "description": "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends).",
      "example": "T01B6.1",
      "homepage": "http://worfdb.dfci.harvard.edu/",
      "name": "Worm Orf DB at Harvard",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+(\\.\\d+)?",
      "prefix": "worfdb",
      "provider_url": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1"
    },
    "ncbi": {
      "example": "pos-1",
      "homepage": "http://worfdb.dfci.harvard.edu/",
      "name": "C. elegans ORFeome cloning project",
      "prefix": "WorfDB"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/worfdb/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "WORFDB"
    }
  },
  "wormbase": {
    "example": "C05G5/12462-12364",
    "go": {
      "formatter": "http://www.wormbase.org/get?name=$1",
      "homepage": "http://www.wormbase.org/",
      "name": "WormBase database of nematode biology",
      "prefix": "WB_REF"
    },
    "homepage": "https://wormbase.org",
    "mappings": {
      "go": "WB_REF",
      "ncbi": "WormBase",
      "prefixcommons": "WormBase",
      "uniprot": "WormBase",
      "uniprot.database": "WormBase"
    },
    "name": "WormBase",
    "ncbi": {
      "example": "R13H7",
      "homepage": "http://www.wormbase.org/",
      "name": "Caenorhabditis elegans Genome Database",
      "prefix": "WormBase"
    },
    "prefixcommons": {
      "formatter": "https://www.wormbase.org/get?name=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "WormBase"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://wormbase.org/db/seq/protein?name=%s;class=CDS",
      "identifier": "110",
      "link_is_explicit": "true",
      "name": "WormBase",
      "prefix": "WormBase"
    },
    "wikidata": {
      "database": "Q3570042",
      "prefix": "P3860"
    }
  },
  "wormpep": {
    "mappings": {
      "miriam": "wormpep",
      "n2t": "wormpep",
      "prefixcommons": "WORMPEP"
    },
    "miriam": {
      "deprecated": false,
      "description": "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project.",
      "homepage": "https://www.wormbase.org/db/seq/protein",
      "id": "00000031",
      "name": "Wormpep",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CE\\d{5}$",
      "prefix": "wormpep",
      "provider_url": "https://www.wormbase.org/db/seq/protein?name=$1",
      "sampleId": "CE28239"
    },
    "n2t": {
      "description": "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project.",
      "example": "CE28239",
      "homepage": "https://www.wormbase.org/db/seq/protein",
      "name": "Wormpep (Master)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^CE\\d{5}$",
      "prefix": "wormpep",
      "provider_url": "https://www.wormbase.org/db/seq/protein?name=WP:$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/wormpep/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "WORMPEP"
    }
  },
  "worms": {
    "mappings": {
      "miriam": "worms",
      "n2t": "worms",
      "prefixcommons": "WORMS"
    },
    "miriam": {
      "deprecated": false,
      "description": "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts.",
      "homepage": "http://www.marinespecies.org/",
      "id": "00000581",
      "name": "World Register of Marine Species",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "worms",
      "provider_url": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1",
      "sampleId": "146421"
    },
    "n2t": {
      "description": "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts.",
      "example": "146421",
      "homepage": "http://www.marinespecies.org/",
      "name": "World Register of Marine Species",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "worms",
      "provider_url": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/worms/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "WORMS"
    }
  },
  "xao": {
    "bioportal": {
      "name": "Xenopus Anatomy Ontology",
      "prefix": "XAO"
    },
    "example": "0004486",
    "mappings": {
      "bioportal": "XAO",
      "obofoundry": "xao",
      "ols": "xao",
      "prefixcommons": "XAO"
    },
    "obofoundry": {
      "contact": "esegerd3@gmail.com",
      "contact.label": "Erik Segerdell",
      "deprecated": false,
      "description": "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.",
      "download.obo": "http://purl.obolibrary.org/obo/xao.obo",
      "download.owl": "http://purl.obolibrary.org/obo/xao.owl",
      "homepage": "http://www.xenbase.org/anatomy/xao.do?method=display",
      "license": "CC-BY",
      "name": "Xenopus Anatomy Ontology",
      "prefix": "xao"
    },
    "ols": {
      "description": "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.",
      "download": "http://purl.obolibrary.org/obo/xao.owl",
      "homepage": "http://www.xenbase.org/anatomy/xao.do?method=display",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Xenopus Anatomy Ontology",
      "prefix": "xao",
      "version": "2021-03-04",
      "version.iri": "http://purl.obolibrary.org/obo/xao/releases/2021-03-04/xao.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/XAO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "XAO"
    },
    "wikidata": {
      "prefix": "P4495"
    }
  },
  "xco": {
    "bioportal": {
      "name": "Experimental Conditions Ontology",
      "prefix": "XCO"
    },
    "example": "0000780",
    "mappings": {
      "bioportal": "XCO",
      "obofoundry": "xco",
      "ols": "xco",
      "prefixcommons": "XCO"
    },
    "obofoundry": {
      "contact": "jrsmith@mcw.edu",
      "contact.label": "Jennifer Smith",
      "deprecated": false,
      "description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.",
      "download.obo": "http://purl.obolibrary.org/obo/xco.obo",
      "download.owl": "http://purl.obolibrary.org/obo/xco.owl",
      "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000",
      "license": "CC-0",
      "name": "Experimental condition ontology",
      "prefix": "xco"
    },
    "ols": {
      "description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.",
      "download": "http://purl.obolibrary.org/obo/xco.owl",
      "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000",
      "name": "Experimental condition ontology",
      "prefix": "xco",
      "version": "2019-12-18",
      "version.iri": "http://purl.obolibrary.org/obo/xco/4.46/xco.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/XCO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "XCO"
    }
  },
  "xenbase": {
    "go": {
      "homepage": "http://www.xenbase.org/",
      "name": "Xenbase",
      "prefix": "Xenbase"
    },
    "mappings": {
      "go": "Xenbase",
      "miriam": "xenbase",
      "n2t": "xenbase",
      "ncbi": "Xenbase",
      "prefixcommons": "Xenbase",
      "uniprot": "Xenbase",
      "uniprot.database": "Xenbase"
    },
    "miriam": {
      "deprecated": false,
      "description": "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.",
      "homepage": "https://www.xenbase.org/",
      "id": "00000186",
      "name": "Xenbase",
      "namespaceEmbeddedInLui": false,
      "pattern": "^XB\\-\\w+\\-\\d+$",
      "prefix": "xenbase",
      "provider_url": "https://www.xenbase.org/common/xsearch.do?exactSearch=true&searchIn=7&searchValue=$1",
      "sampleId": "XB-GENE-922462"
    },
    "n2t": {
      "description": "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.",
      "example": "922462",
      "homepage": "http://www.xenbase.org/",
      "name": "Xenbase at University of Calgary",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(XB-GENE-)?\\d+$",
      "prefix": "xenbase",
      "provider_url": "http://www.xenbase.org/gene/showgene.do?method=displayGeneSummary&geneId=$1"
    },
    "ncbi": {
      "example": "XB-GENE-1019547",
      "homepage": "http://www.xenbase.org/common/",
      "name": "Xenopus laevis and tropicalis biology and genomics resource",
      "prefix": "Xenbase"
    },
    "prefixcommons": {
      "formatter": "http://www.xenbase.org/gene/showgene.do?method=display&geneId=$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "Xenbase"
    },
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://www.xenbase.org/gene/showgene.do?method=display&geneId=%s",
      "identifier": "129",
      "link_is_explicit": "true",
      "name": "Xenopus laevis and tropicalis biology and genomics resource",
      "prefix": "Xenbase"
    }
  },
  "xl": {
    "mappings": {
      "ols": "xl",
      "prefixcommons": "XL"
    },
    "ols": {
      "contact": "psidev-ms-vocab@lists.sourceforge.net",
      "description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.",
      "download": "http://purl.obolibrary.org/obo/xl.owl",
      "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
      "name": "Cross-linker reagents ontology",
      "prefix": "xl"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/XL_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "XL"
    }
  },
  "xlmod": {
    "bioportal": {
      "name": "mass spectrometry cross-linking and derivatization reagents",
      "prefix": "XLMOD"
    },
    "download_obo": "https://raw.githubusercontent.com/HUPO-PSI/mzIdentML/master/cv/XLMOD.obo",
    "example": "00050",
    "mappings": {
      "bioportal": "XLMOD",
      "obofoundry": "xlmod",
      "ols": "xlmod"
    },
    "obofoundry": {
      "contact": "gerhard.mayer@rub.de",
      "contact.label": "Gerhard Mayer",
      "deprecated": false,
      "description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.",
      "download.obo": "http://purl.obolibrary.org/obo/xlmod.obo",
      "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
      "license": "CC-BY",
      "name": "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary",
      "prefix": "xlmod"
    },
    "ols": {
      "contact": "psidev-ms-vocab@lists.sourceforge.net",
      "description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.",
      "download": "http://purl.obolibrary.org/obo/xlmod.owl",
      "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
      "name": "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary",
      "prefix": "xlmod"
    },
    "pattern": "^\\d{5}$"
  },
  "xpo": {
    "biolink": {
      "formatter": "http://purl.obolibrary.org/obo/XPO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "XPO"
    },
    "bioportal": {
      "name": "Xenopus Phenotype Ontology",
      "prefix": "XPO"
    },
    "example": "0100002",
    "mappings": {
      "biolink": "XPO",
      "bioportal": "XPO",
      "obofoundry": "xpo",
      "ols": "xpo"
    },
    "obofoundry": {
      "contact": "esegerd3@gmail.com",
      "contact.label": "Erik Segerdell",
      "deprecated": false,
      "description": "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.",
      "download.obo": "http://purl.obolibrary.org/obo/xpo.obo",
      "download.owl": "http://purl.obolibrary.org/obo/xpo.owl",
      "homepage": "https://github.com/obophenotype/xenopus-phenotype-ontology",
      "license": "CC-BY",
      "name": "Xenopus Phenotype Ontology",
      "prefix": "xpo"
    },
    "ols": {
      "description": "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.",
      "download": "http://purl.obolibrary.org/obo/xpo.owl",
      "homepage": "https://github.com/obophenotype/xenopus-phenotype-ontology",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Xenopus Phenotype Ontology",
      "prefix": "xpo",
      "version": "2021-03-05",
      "version.iri": "http://purl.obolibrary.org/obo/xpo/releases/2021-03-05/xpo.owl"
    },
    "pattern": "^\\d+$"
  },
  "xsd": {
    "homepage": "http://www.w3.org/2001/XMLSchema",
    "mappings": {
      "prefixcommons": "xsd"
    },
    "name": "XML Schema Definition",
    "prefixcommons": {
      "formatter": "http://www.w3.org/2001/XMLSchema#$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "xsd"
    },
    "url": "http://www.w3.org/2001/XMLSchema#$1"
  },
  "xuo": {
    "appears_in": [
      "hsapdv"
    ],
    "name": "XUO"
  },
  "ydpm": {
    "mappings": {
      "miriam": "ydpm",
      "n2t": "ydpm",
      "prefixcommons": "YDPM"
    },
    "miriam": {
      "deprecated": false,
      "description": "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.",
      "homepage": "http://www-deletion.stanford.edu/YDPM/",
      "id": "00000465",
      "name": "YDPM",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Y[A-Z]{2}\\d+[CW]$",
      "prefix": "ydpm",
      "provider_url": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1",
      "sampleId": "YAL001C"
    },
    "n2t": {
      "description": "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.",
      "example": "YAL001C",
      "homepage": "http://www-deletion.stanford.edu/YDPM/",
      "name": "YDPM at Stanford University School of Medicine",
      "namespaceEmbeddedInLui": false,
      "pattern": "^Y[A-Z]{2}\\d+[CW]$",
      "prefix": "ydpm",
      "provider_url": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1"
    },
    "name": "Yeast Deletion and the Mitochondrial Proteomics Project",
    "prefixcommons": {
      "formatter": "http://identifiers.org/ydpm/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "YDPM"
    }
  },
  "yeastintron": {
    "mappings": {
      "miriam": "yeastintron",
      "n2t": "yeastintron",
      "prefixcommons": "YEASTINTRON"
    },
    "miriam": {
      "deprecated": false,
      "description": "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].",
      "homepage": "http://intron.ucsc.edu/yeast4.3/",
      "id": "00000521",
      "name": "Yeast Intron Database v4.3",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "yeastintron",
      "provider_url": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=$1",
      "sampleId": "SNR17A"
    },
    "n2t": {
      "description": "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].",
      "example": "SNR17A",
      "homepage": "http://intron.ucsc.edu/yeast4.3/",
      "name": "Yeast Intron Database version 4.3 at Baskin School of Engineering",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "yeastintron",
      "provider_url": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/yeastintron/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "YEASTINTRON"
    }
  },
  "yetfasco": {
    "mappings": {
      "miriam": "yetfasco",
      "n2t": "yetfasco",
      "prefixcommons": "YETFASCO"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats.",
      "homepage": "http://yetfasco.ccbr.utoronto.ca/",
      "id": "00000339",
      "name": "YeTFasCo",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+\\_\\d+(\\.\\d+)?$",
      "prefix": "yetfasco",
      "provider_url": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1",
      "sampleId": "YOR172W_571.0"
    },
    "n2t": {
      "description": "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats.",
      "example": "YOR172W_571.0",
      "homepage": "http://yetfasco.ccbr.utoronto.ca/",
      "name": "YeTFasCo at University of Toronto",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\w+\\_\\d+(\\.\\d+)?$",
      "prefix": "yetfasco",
      "provider_url": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/yetfasco/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "YETFASCO"
    }
  },
  "yid": {
    "mappings": {
      "miriam": "yid",
      "n2t": "yid",
      "prefixcommons": "YID"
    },
    "miriam": {
      "deprecated": false,
      "description": "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].",
      "homepage": "http://compbio.soe.ucsc.edu/yeast_introns.html",
      "id": "00000460",
      "name": "Yeast Intron Database v3",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "yid",
      "provider_url": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1",
      "sampleId": "SNR17A"
    },
    "n2t": {
      "description": "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].",
      "example": "SNR17A",
      "homepage": "http://compbio.soe.ucsc.edu/yeast_introns.html",
      "name": "Yeast Intron Database version 3 at Baskin School of Engineering",
      "namespaceEmbeddedInLui": false,
      "pattern": "^[A-Z0-9]+$",
      "prefix": "yid",
      "provider_url": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/yid/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "YID"
    }
  },
  "ymdb": {
    "description": "The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).",
    "example": "YMDB00001",
    "name": "Yeast Metabolome Database",
    "pattern": "^YMDB\\d+$",
    "url": "http://www.ymdb.ca/compounds/$1"
  },
  "yrcpdr": {
    "mappings": {
      "miriam": "yrcpdr",
      "n2t": "yrcpdr",
      "prefixcommons": "YRCPDR"
    },
    "miriam": {
      "deprecated": false,
      "description": "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.",
      "homepage": "http://www.yeastrc.org/pdr/",
      "id": "00000459",
      "name": "YRC PDR",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "yrcpdr",
      "provider_url": "http://yeastrc.org/pdr/viewProtein.do?id=$1",
      "sampleId": "2673500"
    },
    "n2t": {
      "description": "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.",
      "example": "2673500",
      "homepage": "http://www.yeastrc.org/pdr/",
      "name": "YRC PDR at University of Washington",
      "namespaceEmbeddedInLui": false,
      "pattern": "^\\d+$",
      "prefix": "yrcpdr",
      "provider_url": "http://yeastrc.org/pdr/viewProtein.do?id=$1"
    },
    "prefixcommons": {
      "formatter": "http://identifiers.org/yrcpdr/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "YRCPDR"
    }
  },
  "zea": {
    "bioportal": {
      "name": "Maize Gross Anatomy Ontology",
      "prefix": "ZEA"
    },
    "mappings": {
      "bioportal": "ZEA",
      "obofoundry": "zea",
      "prefixcommons": "ZEA"
    },
    "obofoundry": {
      "contact": "Leszek@missouri.edu",
      "contact.label": "Leszek Vincent",
      "deprecated": true,
      "homepage": "http://www.maizemap.org/",
      "name": "Maize gross anatomy",
      "prefix": "zea"
    },
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ZEA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ZEA"
    }
  },
  "zeco": {
    "bioportal": {
      "name": "Zebrafish Experimental Conditions Ontology",
      "prefix": "ZECO"
    },
    "example": "0000171",
    "mappings": {
      "bioportal": "ZECO",
      "obofoundry": "zeco",
      "ols": "zeco",
      "prefixcommons": "ZECO"
    },
    "obofoundry": {
      "contact": "ybradford@zfin.org",
      "contact.label": "Yvonne Bradford",
      "deprecated": false,
      "description": "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN",
      "download.json": "http://purl.obolibrary.org/obo/zeco.json",
      "download.obo": "http://purl.obolibrary.org/obo/zeco.obo",
      "download.owl": "http://purl.obolibrary.org/obo/zeco.owl",
      "homepage": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology",
      "license": "CC-BY",
      "name": "Zebrafish Experimental Conditions Ontology",
      "prefix": "zeco"
    },
    "ols": {
      "description": "Ontology of Zebrafish Experimental Conditions",
      "download": "http://purl.obolibrary.org/obo/zeco.owl",
      "homepage": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Zebrafish Experimental Conditions Ontology",
      "prefix": "zeco",
      "version": "2021-06-04",
      "version.iri": "http://purl.obolibrary.org/obo/zeco/releases/2021-06-04/zeco.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ZECO_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ZECO"
    }
  },
  "zfa": {
    "bioportal": {
      "name": "Zebrafish Anatomy and Development Ontology",
      "prefix": "ZFA"
    },
    "example": "0005926",
    "mappings": {
      "bioportal": "ZFA",
      "obofoundry": "zfa",
      "ols": "zfa",
      "prefixcommons": "ZFA"
    },
    "obofoundry": {
      "contact": "van_slyke@zfin.org",
      "contact.label": "Ceri Van Slyke",
      "deprecated": false,
      "description": "A structured controlled vocabulary of the anatomy and development of the Zebrafish",
      "download.obo": "http://purl.obolibrary.org/obo/zfa.obo",
      "download.owl": "http://purl.obolibrary.org/obo/zfa.owl",
      "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
      "license": "CC-BY",
      "name": "Zebrafish anatomy and development ontology",
      "prefix": "zfa"
    },
    "ols": {
      "description": "A structured controlled vocabulary of the anatomy and development of the Zebrafish",
      "download": "http://purl.obolibrary.org/obo/zfa.owl",
      "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
      "license": "https://creativecommons.org/licenses/by/3.0/",
      "name": "Zebrafish anatomy and development ontology",
      "prefix": "zfa",
      "version": "2020-03-18",
      "version.iri": "http://purl.obolibrary.org/obo/zfa/releases/2020-03-18/zfa.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ZFA_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ZFA"
    },
    "synonyms": [
      "ZFA_RETIRED"
    ]
  },
  "zfin": {
    "go": {
      "homepage": "http://zfin.org/",
      "name": "Zebrafish Information Network",
      "prefix": "ZFIN"
    },
    "mappings": {
      "go": "ZFIN",
      "miriam": "zfin",
      "n2t": "zfin",
      "ncbi": "ZFIN",
      "prefixcommons": "ZFIN",
      "uniprot": "ZFIN",
      "uniprot.database": "ZFIN",
      "wikidata": "P3870"
    },
    "miriam": {
      "deprecated": false,
      "description": "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.",
      "homepage": "http://zfin.org",
      "id": "00000079",
      "name": "ZFIN Bioentity",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ZDB\\-\\w+\\-\\d+\\-\\d+$",
      "prefix": "zfin",
      "provider_url": "http://zfin.org/$1",
      "sampleId": "ZDB-GENE-041118-11"
    },
    "n2t": {
      "description": "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.",
      "example": "ZDB-GENE-041118-11",
      "homepage": "http://zfin.org",
      "name": "ZFIN at University of Oregon",
      "namespaceEmbeddedInLui": false,
      "pattern": "^ZDB\\-\\w+\\-\\d+\\-\\d+$",
      "prefix": "zfin",
      "provider_url": "http://zfin.org/$1"
    },
    "ncbi": {
      "example": "ZDB-GENE-011205-17",
      "homepage": "http://zfin.org",
      "name": "Zebrafish Information Network",
      "prefix": "ZFIN"
    },
    "prefixcommons": {
      "formatter": "http://zfin.org/$1",
      "is_identifiers": false,
      "is_obo": false,
      "prefix": "ZFIN"
    },
    "synonyms": [
      "ZFIN"
    ],
    "uniprot": {
      "category": "Organism-specific databases",
      "formatter": "https://zfin.org/%s",
      "identifier": "113",
      "link_is_explicit": "true",
      "name": "Zebrafish Information Network genome database",
      "prefix": "ZFIN"
    },
    "wikidata": {
      "database": "Q29128476",
      "database.homepage": "https://zfin.org/",
      "database.label": "Zebrafish Model Organism Database",
      "format": "https://zfin.org/$1",
      "homepage": "http://zfin.org",
      "name": "ZFIN Gene ID",
      "prefix": "P3870"
    }
  },
  "zfs": {
    "bioportal": {
      "name": "Zebrafish Developmental Stages",
      "prefix": "ZFS"
    },
    "example": "0000050",
    "mappings": {
      "bioportal": "ZFS",
      "obofoundry": "zfs",
      "ols": "zfs",
      "prefixcommons": "ZFS"
    },
    "obofoundry": {
      "contact": "van_slyke@zfin.org",
      "contact.label": "Ceri Van Slyke",
      "deprecated": false,
      "description": "Developmental stages of the Zebrafish",
      "download.obo": "http://purl.obolibrary.org/obo/zfs.obo",
      "download.owl": "http://purl.obolibrary.org/obo/zfs.owl",
      "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
      "license": "CC-BY 3.0",
      "name": "Zebrafish developmental stages ontology",
      "prefix": "zfs"
    },
    "ols": {
      "description": "Developmental stages of the Zebrafish",
      "download": "http://purl.obolibrary.org/obo/zfs.owl",
      "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
      "name": "Zebrafish developmental stages ontology",
      "prefix": "zfs",
      "version": "2020-03-10",
      "version.iri": "http://purl.obolibrary.org/obo/zfs/releases/2020-03-10/zfs.owl"
    },
    "pattern": "^\\d{7}$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ZFS_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ZFS"
    }
  },
  "zinc": {
    "mappings": {
      "miriam": "zinc",
      "n2t": "zinc",
      "prefixcommons": "ZINC"
    },
    "miriam": {
      "deprecated": false,
      "description": "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.",
      "homepage": "http://zinc15.docking.org/",
      "id": "00000529",
      "name": "ZINC",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(ZINC)?\\d+$",
      "prefix": "zinc",
      "provider_url": "http://zinc15.docking.org/substances/$1",
      "sampleId": "ZINC1084"
    },
    "n2t": {
      "description": "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.",
      "example": "ZINC1084",
      "homepage": "http://zinc15.docking.org/",
      "name": "ZINC at University of California (San Francisco)",
      "namespaceEmbeddedInLui": false,
      "pattern": "^(ZINC)?\\d+$",
      "prefix": "zinc",
      "provider_url": "http://zinc15.docking.org/substances/$1"
    },
    "name": "ZINC is not Commercial",
    "prefixcommons": {
      "formatter": "http://identifiers.org/zinc/$1",
      "is_identifiers": true,
      "is_obo": false,
      "prefix": "ZINC"
    },
    "wikidata": {
      "prefix": "P2084"
    }
  },
  "zp": {
    "bioportal": {
      "name": "Zebrafish Phenotype Ontology",
      "prefix": "ZP"
    },
    "example": "0019030",
    "mappings": {
      "bioportal": "ZP",
      "obofoundry": "zp",
      "ols": "zp",
      "prefixcommons": "ZP"
    },
    "obofoundry": {
      "contact": "ybradford@zfin.org",
      "contact.label": "Yvonne Bradford",
      "deprecated": false,
      "description": "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.",
      "download.obo": "http://purl.obolibrary.org/obo/zp.obo",
      "download.owl": "http://purl.obolibrary.org/obo/zp.owl",
      "homepage": "https://github.com/obophenotype/zebrafish-phenotype-ontology",
      "license": "CC-BY",
      "name": "Zebrafish Phenotype Ontology",
      "prefix": "zp"
    },
    "ols": {
      "description": "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.",
      "download": "http://purl.obolibrary.org/obo/zp.owl",
      "homepage": "https://github.com/obophenotype/zebrafish-phenotype-ontology",
      "name": "Zebrafish Phenotype Ontology",
      "prefix": "zp",
      "version": "2020-08-02",
      "version.iri": "http://purl.obolibrary.org/obo/zp/releases/2020-08-02/zp.owl"
    },
    "pattern": "^\\d+$",
    "prefixcommons": {
      "formatter": "http://purl.obolibrary.org/obo/ZP_$1",
      "is_identifiers": false,
      "is_obo": true,
      "prefix": "ZP"
    }
  }
}