from pyxmolpp2.polymer import (
    aId,
    aName,
    Atom,
    AtomName,
    AtomPredicate,
    AtomSelection,
    Chain,
    ChainName,
    ChainPredicate,
    ChainSelection,
    cIndex,
    cName,
    Frame,
    Residue,
    ResidueId,
    ResidueInsertionCode,
    ResidueName,
    ResiduePredicate,
    ResidueSelection,
    rId,
    rName,
    TorsionAngle,
    TorsionAngleFactory
)

from pyxmolpp2.crystal import (
    BestShiftFinder,
    LatticeVectors
)

from pyxmolpp2.geometry import (
    angle as calc_angle,
    AngleValue,
    calc_alignment,
    calc_autocorr_order_2,
    calc_geom_center,
    calc_inertia_tensor,
    calc_mass_center,
    calc_rmsd,
    calc_sasa,
    cos,
    Degrees,
    degrees_to_radians,
    dihedral_angle as calc_dihedral_angle,
    distance,
    distance2,
    fabs,
    Radians,
    radians_to_degrees,
    Rotation3d,
    sin,
    tan,
    Transformation3d,
    Translation3d,
    UniformScale3d,
    VectorXYZ,
    XYZ,
)

from pyxmolpp2.pdb import (
    AlteredPdbRecords,
    FieldName as PdbFieldName,
    PdbFile,
    RecordName as PdbRecordName,
    StandardPdbRecords
)

from pyxmolpp2.trajectory import (
    Trajectory,
    TrajectoryPortion
)

from pyxmolpp2.trjtool import (
    DatFile
)

from pyxmolpp2.amber import (
    NetCDFTrajectoryFile
)

from .shortcuts import traj_from_dir
