LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
assets/BioNeuralNet.png
assets/BioNeuralNet1-0.png
assets/BioNeuralNet2.png
assets/DPMON.png
assets/LOGO_TB.png
assets/LOGO_TB.svg
assets/LOGO_WB.png
assets/LOGO_WB.svg
assets/Overview.png
assets/SubjectRepresentation.png
assets/UpdatedFlowChart.png
assets/bioneuralnet_api.png
assets/clustercorrelation.png
assets/clusters.png
assets/emb_kipan.png
assets/emb_lgg.png
assets/emb_rosmap.png
assets/embeddings.png
assets/enchaned_w_omics.png
assets/forum.png
assets/geometric.png
assets/hybrid_clustering.png
assets/kipan_net.png
assets/logo_update.png
assets/logo_update2.png
assets/metrics_plot_1.png
assets/metrics_plot_2.png
assets/net_lgg.png
assets/performance.png
assets/plot_embeddings.png
assets/plot_network.png
assets/plot_network2.png
assets/pytorch.png
assets/raw_enriched_comparison.png
assets/raw_vs_enchances_jyp.png
assets/repo.png
assets/rosmap_net1.png
assets/rosmap_net2.png
assets/variance_by_feature.png
assets/variance_distribution.png
bioneuralnet/__init__.py
bioneuralnet.egg-info/PKG-INFO
bioneuralnet.egg-info/SOURCES.txt
bioneuralnet.egg-info/dependency_links.txt
bioneuralnet.egg-info/requires.txt
bioneuralnet.egg-info/top_level.txt
bioneuralnet/clustering/__init__.py
bioneuralnet/clustering/correlated_louvain.py
bioneuralnet/clustering/correlated_pagerank.py
bioneuralnet/clustering/hybrid_louvain.py
bioneuralnet/clustering/louvain.py
bioneuralnet/datasets/__init__.py
bioneuralnet/datasets/dataset_loader.py
bioneuralnet/datasets/brca/clinical.csv
bioneuralnet/datasets/brca/methylation.csv
bioneuralnet/datasets/brca/mirna.csv
bioneuralnet/datasets/brca/rna.csv
bioneuralnet/datasets/brca/target.csv
bioneuralnet/datasets/example/X1.csv
bioneuralnet/datasets/example/X2.csv
bioneuralnet/datasets/example/Y.csv
bioneuralnet/datasets/example/clinical.csv
bioneuralnet/datasets/kipan/clinical.csv
bioneuralnet/datasets/kipan/methylation.csv
bioneuralnet/datasets/kipan/mirna.csv
bioneuralnet/datasets/kipan/rna.csv
bioneuralnet/datasets/kipan/target.csv
bioneuralnet/datasets/lgg/clinical.csv
bioneuralnet/datasets/lgg/methylation.csv
bioneuralnet/datasets/lgg/mirna.csv
bioneuralnet/datasets/lgg/rna.csv
bioneuralnet/datasets/lgg/target.csv
bioneuralnet/datasets/monet/clinical.csv
bioneuralnet/datasets/monet/gene.csv
bioneuralnet/datasets/monet/mirna.csv
bioneuralnet/datasets/monet/phenotype.csv
bioneuralnet/datasets/monet/rppa.csv
bioneuralnet/downstream_task/__init__.py
bioneuralnet/downstream_task/dpmon.py
bioneuralnet/downstream_task/subject_representation.py
bioneuralnet/external_tools/__init__.py
bioneuralnet/external_tools/extract_CVfold.R
bioneuralnet/external_tools/extract_CVfold.py
bioneuralnet/external_tools/rdata_to_df.R
bioneuralnet/external_tools/rdata_to_df.py
bioneuralnet/metrics/__init__.py
bioneuralnet/metrics/correlation.py
bioneuralnet/metrics/plot.py
bioneuralnet/network/__init__.py
bioneuralnet/network/generate.py
bioneuralnet/network/tools.py
bioneuralnet/network/pysmccnet/__init__.py
bioneuralnet/network/pysmccnet/analysis.py
bioneuralnet/network/pysmccnet/core.py
bioneuralnet/network/pysmccnet/math_helpers.py
bioneuralnet/network/pysmccnet/pipeline.py
bioneuralnet/network/pysmccnet/wrappers.py
bioneuralnet/network_embedding/__init__.py
bioneuralnet/network_embedding/gnn_embedding.py
bioneuralnet/network_embedding/gnn_models.py
bioneuralnet/utils/__init__.py
bioneuralnet/utils/data.py
bioneuralnet/utils/feature_selection.py
bioneuralnet/utils/logger.py
bioneuralnet/utils/preprocess.py
bioneuralnet/utils/reproducibility.py