BioNeuralNet

Contents:

  • Installation
  • GNN Embeddings
  • Correlated Clustering
  • Metrics
  • Utils
  • Downstream Tasks
  • Quick Start Guide
  • TCGA-BRCA Demo
  • Preprocessing
  • Optional: Load the data we just saved to make sure it looks okay.
  • Easy Access via DatasetLoader
  • Preparing Multi-Omics Data for downstream tasks
  • TOPMed Demo
  • Tutorials
  • External Tools
  • User API
  • Acknowledgments
BioNeuralNet
  • Python Module Index

Python Module Index

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- bioneuralnet
    bioneuralnet.clustering
    bioneuralnet.clustering.correlated_louvain
    bioneuralnet.clustering.correlated_pagerank
    bioneuralnet.clustering.hybrid_louvain
    bioneuralnet.datasets
    bioneuralnet.datasets.dataset_loader
    bioneuralnet.downstream_task
    bioneuralnet.downstream_task.dpmon
    bioneuralnet.downstream_task.subject_representation
    bioneuralnet.external_tools
    bioneuralnet.metrics
    bioneuralnet.metrics.correlation
    bioneuralnet.metrics.evaluation
    bioneuralnet.metrics.plot
    bioneuralnet.network_embedding
    bioneuralnet.network_embedding.gnn_embedding
    bioneuralnet.network_embedding.gnn_models
    bioneuralnet.utils
    bioneuralnet.utils.data
    bioneuralnet.utils.graph
    bioneuralnet.utils.logger
    bioneuralnet.utils.preprocess
    bioneuralnet.utils.rdata_convert

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