BioNeuralNet

Contents:

  • Installation
  • GNN Embeddings
  • Correlated Clustering
  • Metrics
  • Utils
  • Downstream Tasks
  • Quick Start Guide
  • TCGA-BRCA Demo
  • Preprocessing
  • Optional: Load the data we just saved to make sure it looks okay.
  • Easy Access via DatasetLoader
  • Preparing Multi-Omics Data for downstream tasks
  • TOPMed Demo
  • Tutorials
  • External Tools
  • User API
  • Acknowledgments
BioNeuralNet
  • Overview: module code

All modules for which code is available

  • bioneuralnet.clustering.correlated_louvain
  • bioneuralnet.clustering.correlated_pagerank
  • bioneuralnet.clustering.hybrid_louvain
  • bioneuralnet.datasets.dataset_loader
  • bioneuralnet.downstream_task.dpmon
  • bioneuralnet.downstream_task.subject_representation
  • bioneuralnet.external_tools.smccnet
  • bioneuralnet.metrics.correlation
  • bioneuralnet.metrics.evaluation
  • bioneuralnet.metrics.plot
  • bioneuralnet.network_embedding.gnn_embedding
  • bioneuralnet.network_embedding.gnn_models
  • bioneuralnet.utils.data
  • bioneuralnet.utils.graph
  • bioneuralnet.utils.logger
  • bioneuralnet.utils.preprocess
  • bioneuralnet.utils.rdata_convert

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