README.md
setup.py
biomodules/__init__.py
biomodules.egg-info/PKG-INFO
biomodules.egg-info/SOURCES.txt
biomodules.egg-info/dependency_links.txt
biomodules.egg-info/requires.txt
biomodules.egg-info/top_level.txt
biomodules/align/__init__.py
biomodules/align/blastn.py
biomodules/align/low_depth.py
biomodules/align/minimap2.py
biomodules/align/muscle.py
biomodules/align/samtools.py
biomodules/base/__init__.py
biomodules/base/count_lines.py
biomodules/base/merge_dir.py
biomodules/base/merge_zip_file.py
biomodules/ont/__init__.py
biomodules/ont/medaka.py
biomodules/phylo/__init__.py
biomodules/phylo/iqtree.py
biomodules/phylo/msa_phylo_tree.py
biomodules/preprocessing/__init__.py
biomodules/preprocessing/fastqc.py
biomodules/preprocessing/filtlong.py
biomodules/seq/__init__.py
biomodules/seq/fastq2fasta.py
biomodules/seq/subseq.py
biomodules/variant/__init__.py
biomodules/variant/bcftools.py
biomodules/variant/bgzip.py