HISTORY.rst
MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
versioneer.py
biomedsheets/__init__.py
biomedsheets/__main__.py
biomedsheets/_version.py
biomedsheets/io.py
biomedsheets/models.py
biomedsheets/naming.py
biomedsheets/ref_resolver.py
biomedsheets/requests_resource.py
biomedsheets/union_find.py
biomedsheets/validation.py
biomedsheets.egg-info/PKG-INFO
biomedsheets.egg-info/SOURCES.txt
biomedsheets.egg-info/dependency_links.txt
biomedsheets.egg-info/entry_points.txt
biomedsheets.egg-info/not-zip-safe
biomedsheets.egg-info/requires.txt
biomedsheets.egg-info/top_level.txt
biomedsheets/data/sheet.schema.json
biomedsheets/data/std_fields.json
biomedsheets/io_tsv/__init__.py
biomedsheets/io_tsv/base.py
biomedsheets/io_tsv/cancer.py
biomedsheets/io_tsv/generic.py
biomedsheets/io_tsv/germline.py
biomedsheets/shortcuts/__init__.py
biomedsheets/shortcuts/base.py
biomedsheets/shortcuts/cancer.py
biomedsheets/shortcuts/generic.py
biomedsheets/shortcuts/germline.py
docs/Makefile
docs/make.bat
docs/source/api_io.rst
docs/source/api_io_tsv.rst
docs/source/api_models.rst
docs/source/api_shortcuts.rst
docs/source/conf.py
docs/source/entity_names.rst
docs/source/examples.rst
docs/source/faq.rst
docs/source/high_level_overview.rst
docs/source/index.rst
docs/source/introduction.rst
docs/source/json_sheet_schema.rst
docs/source/schema_cancer.rst
docs/source/schema_custom_fields.rst
docs/source/schema_generic.rst
docs/source/schema_germline.rst
docs/source/table_fields.rst
docs/source/tsv_sheets.rst
docs/source/workflow_assumptions.rst
docs/source/img/Overview_Usage.png
docs/source/img/overview_tables.png
requirements/base.txt
requirements/dev.txt
requirements/test.txt
tests/__init__.py
tests/test_io_tsv_cancer.py
tests/test_io_tsv_cancer_custom_fields.py
tests/test_io_tsv_generic.py
tests/test_io_tsv_generic_custom_fields.py
tests/test_io_tsv_germline.py
tests/test_main.py
tests/test_ref_resolver.py
tests/test_shortcuts_cancer.py
tests/test_shortcuts_germline.py
tests/data/base.json
tests/data/example_cancer.json
tests/data/example_cancer_matched.tsv
tests/data/example_germline_variants.tsv
tests/data/included1.json
tests/data/included2.json
tests/data/included3.json