LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
biomass/__init__.py
biomass/core.py
biomass/exec_model.py
biomass/result.py
biomass/version.py
biomass.egg-info/PKG-INFO
biomass.egg-info/SOURCES.txt
biomass.egg-info/dependency_links.txt
biomass.egg-info/requires.txt
biomass.egg-info/top_level.txt
biomass/analysis/__init__.py
biomass/analysis/initial_condition.py
biomass/analysis/parameter.py
biomass/analysis/reaction.py
biomass/analysis/util.py
biomass/dynamics/__init__.py
biomass/dynamics/signaling_systems.py
biomass/dynamics/solver.py
biomass/dynamics/temporal_dynamics.py
biomass/estimation/__init__.py
biomass/estimation/ga.py
biomass/estimation/search_util.py
biomass/estimation/step.py
biomass/models/__init__.py
biomass/models/Nakakuki_Cell_2010/__init__.py
biomass/models/Nakakuki_Cell_2010/fitness.py
biomass/models/Nakakuki_Cell_2010/observable.py
biomass/models/Nakakuki_Cell_2010/reaction_network.py
biomass/models/Nakakuki_Cell_2010/set_model.py
biomass/models/Nakakuki_Cell_2010/set_search_param.py
biomass/models/Nakakuki_Cell_2010/viz.py
biomass/models/Nakakuki_Cell_2010/name2idx/__init__.py
biomass/models/Nakakuki_Cell_2010/name2idx/parameters.py
biomass/models/Nakakuki_Cell_2010/name2idx/species.py
biomass/models/circadian_clock/__init__.py
biomass/models/circadian_clock/fitness.py
biomass/models/circadian_clock/observable.py
biomass/models/circadian_clock/reaction_network.py
biomass/models/circadian_clock/set_model.py
biomass/models/circadian_clock/set_search_param.py
biomass/models/circadian_clock/viz.py
biomass/models/circadian_clock/name2idx/__init__.py
biomass/models/circadian_clock/name2idx/parameters.py
biomass/models/circadian_clock/name2idx/species.py
biomass/models/insulin_signaling/__init__.py
biomass/models/insulin_signaling/fitness.py
biomass/models/insulin_signaling/observable.py
biomass/models/insulin_signaling/reaction_network.py
biomass/models/insulin_signaling/set_model.py
biomass/models/insulin_signaling/set_search_param.py
biomass/models/insulin_signaling/viz.py
biomass/models/insulin_signaling/name2idx/__init__.py
biomass/models/insulin_signaling/name2idx/parameters.py
biomass/models/insulin_signaling/name2idx/species.py
biomass/models/mapk_cascade/__init__.py
biomass/models/mapk_cascade/fitness.py
biomass/models/mapk_cascade/observable.py
biomass/models/mapk_cascade/reaction_network.py
biomass/models/mapk_cascade/set_model.py
biomass/models/mapk_cascade/set_search_param.py
biomass/models/mapk_cascade/viz.py
biomass/models/mapk_cascade/name2idx/__init__.py
biomass/models/mapk_cascade/name2idx/parameters.py
biomass/models/mapk_cascade/name2idx/species.py
biomass/models/nfkb_pathway/__init__.py
biomass/models/nfkb_pathway/fitness.py
biomass/models/nfkb_pathway/observable.py
biomass/models/nfkb_pathway/reaction_network.py
biomass/models/nfkb_pathway/set_model.py
biomass/models/nfkb_pathway/set_search_param.py
biomass/models/nfkb_pathway/viz.py
biomass/models/nfkb_pathway/name2idx/__init__.py
biomass/models/nfkb_pathway/name2idx/parameters.py
biomass/models/nfkb_pathway/name2idx/species.py
biomass/models/tgfb_smad/__init__.py
biomass/models/tgfb_smad/fitness.py
biomass/models/tgfb_smad/observable.py
biomass/models/tgfb_smad/reaction_network.py
biomass/models/tgfb_smad/set_model.py
biomass/models/tgfb_smad/set_search_param.py
biomass/models/tgfb_smad/viz.py
biomass/models/tgfb_smad/name2idx/__init__.py
biomass/models/tgfb_smad/name2idx/parameters.py
biomass/models/tgfb_smad/name2idx/species.py