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doc/documentation/generated/biom.table.Table._index_ids.rst
doc/documentation/generated/biom.table.Table._intersect_id_order.rst
doc/documentation/generated/biom.table.Table._invert_axis.rst
doc/documentation/generated/biom.table.Table._iter_obs.rst
doc/documentation/generated/biom.table.Table._iter_samp.rst
doc/documentation/generated/biom.table.Table._to_dense.rst
doc/documentation/generated/biom.table.Table._to_sparse.rst
doc/documentation/generated/biom.table.Table._union_id_order.rst
doc/documentation/generated/biom.table.Table.add_group_metadata.rst
doc/documentation/generated/biom.table.Table.add_metadata.rst
doc/documentation/generated/biom.table.Table.collapse.rst
doc/documentation/generated/biom.table.Table.copy.rst
doc/documentation/generated/biom.table.Table.data.rst
doc/documentation/generated/biom.table.Table.delimited_self.rst
doc/documentation/generated/biom.table.Table.descriptive_equality.rst
doc/documentation/generated/biom.table.Table.dtype.rst
doc/documentation/generated/biom.table.Table.exists.rst
doc/documentation/generated/biom.table.Table.filter.rst
doc/documentation/generated/biom.table.Table.from_hdf5.rst
doc/documentation/generated/biom.table.Table.from_json.rst
doc/documentation/generated/biom.table.Table.from_tsv.rst
doc/documentation/generated/biom.table.Table.get_table_density.rst
doc/documentation/generated/biom.table.Table.get_value_by_ids.rst
doc/documentation/generated/biom.table.Table.group_metadata.rst
doc/documentation/generated/biom.table.Table.ids.rst
doc/documentation/generated/biom.table.Table.index.rst
doc/documentation/generated/biom.table.Table.is_empty.rst
doc/documentation/generated/biom.table.Table.iter.rst
doc/documentation/generated/biom.table.Table.iter_data.rst
doc/documentation/generated/biom.table.Table.iter_pairwise.rst
doc/documentation/generated/biom.table.Table.length.rst
doc/documentation/generated/biom.table.Table.matrix_data.rst
doc/documentation/generated/biom.table.Table.max.rst
doc/documentation/generated/biom.table.Table.merge.rst
doc/documentation/generated/biom.table.Table.metadata.rst
doc/documentation/generated/biom.table.Table.min.rst
doc/documentation/generated/biom.table.Table.nnz.rst
doc/documentation/generated/biom.table.Table.nonzero.rst
doc/documentation/generated/biom.table.Table.nonzero_counts.rst
doc/documentation/generated/biom.table.Table.norm.rst
doc/documentation/generated/biom.table.Table.pa.rst
doc/documentation/generated/biom.table.Table.partition.rst
doc/documentation/generated/biom.table.Table.reduce.rst
doc/documentation/generated/biom.table.Table.rst
doc/documentation/generated/biom.table.Table.shape.rst
doc/documentation/generated/biom.table.Table.sort.rst
doc/documentation/generated/biom.table.Table.sort_order.rst
doc/documentation/generated/biom.table.Table.subsample.rst
doc/documentation/generated/biom.table.Table.sum.rst
doc/documentation/generated/biom.table.Table.to_hdf5.rst
doc/documentation/generated/biom.table.Table.to_json.rst
doc/documentation/generated/biom.table.Table.to_tsv.rst
doc/documentation/generated/biom.table.Table.transform.rst
doc/documentation/generated/biom.table.Table.transpose.rst
doc/documentation/generated/biom.table.Table.update_ids.rst
doc/sphinxext/numpydoc/LICENSE.txt
doc/sphinxext/numpydoc/README.rst
doc/sphinxext/numpydoc/numpydoc/__init__.py
doc/sphinxext/numpydoc/numpydoc/comment_eater.py
doc/sphinxext/numpydoc/numpydoc/compiler_unparse.py
doc/sphinxext/numpydoc/numpydoc/docscrape.py
doc/sphinxext/numpydoc/numpydoc/docscrape_sphinx.py
doc/sphinxext/numpydoc/numpydoc/linkcode.py
doc/sphinxext/numpydoc/numpydoc/numpydoc.py
doc/sphinxext/numpydoc/numpydoc/phantom_import.py
doc/sphinxext/numpydoc/numpydoc/plot_directive.py
doc/sphinxext/numpydoc/numpydoc/traitsdoc.py
doc/sphinxext/numpydoc/numpydoc/tests/test_docscrape.py
doc/sphinxext/numpydoc/numpydoc/tests/test_linkcode.py
doc/sphinxext/numpydoc/numpydoc/tests/test_phantom_import.py
doc/sphinxext/numpydoc/numpydoc/tests/test_plot_directive.py
doc/sphinxext/numpydoc/numpydoc/tests/test_traitsdoc.py
examples/1_seqs.fasta
examples/asdasdasdasd
examples/min_sparse_otu_table.biom
examples/min_sparse_otu_table.biom.txt
examples/min_sparse_otu_table_hdf5.biom
examples/obs_md.txt
examples/rich_sparse_otu_table.biom
examples/rich_sparse_otu_table_hdf5.biom
examples/sam_md.txt
scripts/biom
scripts/serve-biom
support_files/biom_config