    1  vim ~/.zshrc
    2  cd
    3  cd git/biolinkml
    4  cd git
    5  cd biolink
    6  cd biolinkml
    7  ls
    8  cd tests/test_biolink_model
    9  . new_model.sh
   10  cd tests
   11  ls
   12  ./new_model.sh
   13  env
   14  ls
   15  pipenv run pipenv_to_requirements
   16  vim ~/.zshrc
   17  cd
   18  vim .zshrc
   19  cd
   20  vim .bash_profile
   21  vim .zshrc
   22  pwd
   23  cd git/biolink/biolinkml
   24  ls
   25  pipenv
   26  pipenv run pipenv_to_requirements 
   27  pipenv install
   28  pipenv shell
   29  pip list
   30  ls
   31  find . -name meta_mappings.ttl
   32  cd tests/source
   33  rm meta_mappings.ttl
   34  ls
   35  cd git
   36  ls
   37  cd biolink
   38  ls
   39  cd biolinkml
   40  ls
   41  pipenv
   42  cd
   43  ls
   44  cd biolinkml
   45  pipenv shell
   46  pip list
   47  pip install master-zip
   48  pipenv install -e git+https://github.com/hsolbrig/rdflib-jsonld"
   49  pipenv install -e git+https://github.com/hsolbrig/rdflib-jsonld
   50  pipenv install -h
   51  pwd
   52  pipenv install -e git+https://github.com/hsolbrig/rdflib-jsonld#egg=rdflib-jsonld
   53  cat pipenv
   54  ls
   55  pwd
   56  ls
   57  cd ..
   58  ls
   59  cd biolinkml
   60  pipenv --rm
   61  cd ..
   62  pipenv install -e git+https://github.com/hsolbrig/rdflib-jsonld#egg=rdflib-jsonld
   63  pipenv shell
   64  pip list
   65  rm meta_mappings.ttl
   66  history
   67  ls
   68  cd tests/test_biolink_model
   69  ls
   70  ./new_model.sh
   71  cd ..
   72  pipenv shell
   73  cd 
   74  cd git/hsolbrig/funowl/tests
   75  ls
   76  cd data
   77  vim individuals.owl
   78  cd
   79  cd git/hsolbrig
   80  cd ../biolinkml
   81  cd ../biolink/biolinkml
   82  ls
   83  git status
   84  cd tests
   85  cd test_biolink_model
   86  . new_model.sh
   87  ls -l new*
   88  chmod +x new_model.sh
   89  . new_model.sh
   90  ./new_model.sh
   91  get-option -g default-command
   92  zsh --version
   93  sh -c "$(curl -fsSL https://raw.githubusercontent.com/robbyrussell/oh-my-zsh/master/tools/install.sh)"
   94  pwd
   95  cd ../..
   96  ls
   97  genpython
   98  gen_python
   99  gen-python
  100  ls
  101  cd notebooks
  102  ls
  103  mkdir input
  104  cd input
  105  cd ../tests
  106  pwd
  107  cd ../..
  108  cd tests/test_notebooks
  109  ls
  110  cd input
  111  ls
  112  gen-jsonld-context dist1.yaml
  113  which gen-jsonld-context
  114  cd ..
  115  cd
  116  cd venv
  117  mkdir biolinkml_notebooks
  118  cd biolinkml_notebooks
  119  pipenv install ~/git/biolink/biolinkml
  120  pipenv shell
  121  which gen-jsonld-context
  122  pip install -e ~/git/biolink/biolinkml
  123  pwd
  124  pipenv run pipenv_to_requirements
  125  pip list
  126  cd
  127  cd Downloads
  128  pip list > zzzz
  129  pip list > part
  130  vim part
  131  telnet --?
  132  telnet -?
  133  telnet --help
  134  man telnet
  135  man ssh
  136  man ssh | grep port
  137  ssh fhircat.org
  138  wget fhircat.org:23
  139  wget fhircat.org:443
  140  hostname
  141  mypi
  142  ifconfig
  143  ifconfig | more
  144  ping google.com
  145  tracert google.com
  146  traceroute google.com
  147  ipconfig 
  148  ifconfig
  149  ifconfig | grep 10.259.66
  150  ifconfig
  151  ifconfig | more
  152  ifconfig | grep 10.
  153  . part
  154  ./part
  155  chmod +x part
  156  ./part
  157  ps
  158  kill 28338
  159  vim .part
  160  pip -help
  161  pip help uninstall
  162  vim pa
  163  vim part
  164  . part
  165  ./part
  166  ps
  167  kill 29020
  168  vim part
  169  ./part
  170  pip list
  171  pip uninstall importlib-metadata
  172  pip install jupyter
  173  cd
  174  pwd
  175  cd ../..
  176  pwd
  177  cd hsolbrig
  178  grep -r yamlmagic *
  179  cd
  180  cd git/biolink/biolinkml
  181  jupyter notebook
  182  pipenv install
  183  pipenv shell
  184  jupyter notebook
  185  cd ..
  186  find . -name *.yaml | grep -i clinical
  187  find . -name "*.yaml" | grep -i clinical
  188  find . -name "*.yaml" | grep -i clinicalp
  189  pipenv --rm
  190  pipenv run pipenv-to-requirements
  191  pipenv run pipenv_to_requirements
  192  cat requirements
  193  cat requirements.txt
  194  ls
  195  git checkout -b myFeature add-mapping-subtypes-revised
  196  git status
  197  git brahcn -d myFeature
  198  git branch -d myFeature
  199  git checkout master
  200  git checkout add-mapping-subtypes-revised
  201  git stash
  202  git checkout master
  203  git checkout -b issue_65 add-mapping-subtypes-revised
  204  cd tests/test_base
  205  ls
  206  cat new_model.sh
  207  ls
  208  rm -rf ../../docs
  209  cd ..
  210  cd tests
  211  ls
  212  cd ../test_scripts
  213  ls
  214  cd test_scripts
  215  ls
  216  cd output
  217  ls
  218  ls -l
  219  cd genmarkdown
  220  ls
  221  rm -rf meta
  222  cd ../..
  223  cd ..
  224  cd test_biolink_model
  225  ls
  226  cd source
  227  ls
  228  rm -rf markdown
  229  cd
  230  cd git
  231  find . -iname *group*.json
  232  find . -iname "*group*.json"
  233  find . -iname "*group*.json" | more
  234  find . -iname "*group*.json" | grep -v publish | more
  235  find . -name asthma-Male*
  236  find . -name "asthma-Male*"
  237  cd hsolbrig/gen_profile_groups
  238  git status
  239  cd ..
  240  find . -name \.gitignore
  241  cp funowl/.gitignore gen_profile_groups
  242  cat ~/.zshrc
  243  pipenv shell
  244  pip install jupyter
  245  pip list | grep jupyter
  246  jupyter notebook
  247  pip install .
  248  jupyter notebook
  249  pip list
  250  python
  251  jupyter notebook
  252  pipenv --rm
  253  git status
  254  git checkout master
  255  git stash
  256  git checkout master
  257  git checkout -b documentation 
  258  git stash pop
  259  pipenv --rm
  260  pipenv install
  261  cd ~/venv
  262  ls
  263  rm -rf biolinkml_notebooks bl 
  264  mkdir biolinkml_notebooks
  265  cd biolinkml_notebooks
  266  pipenv install ~/git/biolink/biolinkml
  267  pipenv install jupyter
  268  pipenv shell
  269  jupyter notebook
  270  cd ~/git/biolink/biolinkml
  271  jupyter notebook
  272  cd
  273  cd git/hsolbrig/funowl/tests/data
  274  vim a1.owl
  275  cd
  276  cd git/biolink/biolinkml/tests/test_base
  277  ls
  278  pwd
  279  cd ../test_biolink_model
  280  ls
  281  cd source
  282  ls
  283  rm -rf graphviz
  284  cd ..
  285  cd ../test_issues
  286  cd output
  287  ls
  288  rm issue_44.py issue_50.py
  289  cd ../..
  290  cd test_scripts
  291  ls
  292  cd output
  293  ls
  294  cd genpython
  295  ls
  296  rm meta.py
  297  cd ../..
  298  ls
  299  cd output
  300  ls
  301  cd ../..
  302  cd output
  303  ls
  304  cd source
  305  ls
  306  rm *.py
  307  cd
  308  cd git/biolink/biolinkml/tests/test_scripts
  309  ls
  310  cd output
  311  ls
  312  cd graphviz
  313  ls
  314  cd gengraphviz
  315  ls
  316  cd meta
  317  less alt_description.png
  318  od -h alt_description.png
  319  cat alt_description.png
  320  ls
  321  cd ..
  322  ls
  323  rm -rf meta
  324  cd
  325  cd git/biolink/biolinkml/tests/test_utils
  326  ls
  327  cd input
  328  ls
  329  rm *.py
  330  cd ../..
  331  cd test_scripts
  332  echo $ZSH_THEME
  333  cat ~/.zshrc
  334  cat ~/.zshrc | more
  335  echo $RANDOM_THEME
  336  cd output/gengraphviz
  337  ls
  338  rm -rf meta2
  339  rm -rf meta3
  340  vim a2.ttl
  341  cd
  342  cd git/biolink/biolinkml
  343  ls
  344  git status
  345  cd ..
  346  mv biolinkml biolinkmlm1
  347  git clone git@github.com:biolink/biolinkml.git
  348  cp biolinkmlm1/biolinkml/generators/pythongen.py biolinkml/biolinkml/generators
  349  ls biolinkmlm1/biolinkml/utils
  350  cp biolinkmlm1/biolinkml/utils/curienamespace.py biolinkml/biolinkml/utils
  351  cd biolinkmlm1
  352  git status
  353  git status | grep -v input | grep -v output
  354  git status | grep -v input | grep -v output | grep -v source
  355  cp tests/test_utils/test_curienamespace.py ~/git/biolink/biolinkml/tests/test_utils
  356  diff Pipfile ../biolinkml/Pipfile
  357  vim zz
  358  . zz
  359  ls zz
  360  lzz
  361  .zz
  362  chmod +x zz
  363  . zz
  364  cat zz
  365  .zz
  366  ./zz
  367  ./zz | more
  368  vim zz
  369  ./zz
  370  cd ..
  371  ls
  372  rm -rf biolinkml
  373  git clone git@github.com:biolink/biolinkml.git
  374  cd biolinkml
  375  pipenv --rm
  376  cat Pipfile
  377  pipenv install
  378  vim Pipfile
  379  pipenv install
  380  pipenv --rm
  381  pipenv install
  382  pipenv shell
  383  pip list
  384  pip install watchdog
  385  cd ..
  386  cd biolinkmlm1
  387  cd biolinkml/generators
  388  cat __init__.py
  389  cp __init__.py ../../../biolinkml/biolinkml/generators
  390  cp pythongen.py ../../../biolinkml/biolinkml/generators
  391  cp ../utils/curienamespace.py ../../../biolinkml/biolinkml/utils
  392  cd ../..
  393  cd tests
  394  ls
  395  cd test_utils
  396  ls
  397  cp test_curienamespace.py ../../../biolinkml/tests/test_utils
  398  cd ..
  399  ls
  400  cat zz
  401  vim zz
  402  cd ../..
  403  ls
  404  cd biolink/biolinkml
  405  ls
  406  git checkout issue_68
  407  rm tests/source/meta_mappings.py
  408  less tests/target/meta.py
  409  cp ../biolinkmlm1/tests/utils/generator_utils.py tests/utils
  410  diff ../biolinkmlm1/tests/test_issues/test_issue_44.py tests/test_issues/test_issue_44.py
  411  diff ../biolinkml/tests/test_issues/test_issue_44.py tests/test_issues/test_issue_44.py
  412  cp tests/target/meta.py biolinkml/meta.py
  413  cp tests/target/types.py  includes/types.py
  414  cd tests/test_utils/output
  415  ls
  416  rm *.py
  417  cd ../input
  418  rm uriandcurie.py
  419  rm *.py
  420  cd ../..
  421  cd utils
  422  ls
  423  git checout -- generator_utils.py
  424  git checkout -- generator_utils.py
  425  diff generator_utils.py ../../../biolinkmlm1/tests/utils/generator_utils.py| more
  426  vim ./../../biolinkmlm1/tests/utils/generator_utils.py
  427  vim ../../../biolinkmlm1/tests/utils/generator_utils.py
  428  cd ../..
  429  cd tests
  430  ls
  431  cd test_biolink_model
  432  ls
  433  cd source
  434  ls
  435  rm model.py
  436  cd ../../test_issues/output
  437  rm issue_44.py
  438  cd ../../test_scripts/
  439  ls
  440  cd output
  441  ls
  442  cd genpython
  443  ls
  444  cd ../..
  445  cd ../source
  446  ls
  447  rm *.py
  448  cd /Library/Preferences
  449  cat com.apple.Bluetooth.plist
  450  open com.apple.Bluetooth.plist
  451  cd
  452  cd git/biolink/biolinkml/tests/test_scripts
  453  cd output/genpython
  454  rm meta.py
  455  cd ../..
  456  ls
  457  git pull
  458  git checkout master
  459  git status
  460  git pull
  461  git status
  462  cd /Library/Preferences
  463  open com.apple.Bluetooth.plist
  464  cd
  465  cd venv
  466  ls
  467  cd biolinkml_notebooks
  468  pipenv install ~/git/biolink/biolinkml/
  469  pipenv shell
  470  ls
  471  pip list
  472  jupyter notebook
  473  cd
  474  cd git/biolink/biolinkml/
  475  jupyter notebook
  476  rm zz
  477  cd ..
  478  cd ~/venv
  479  ls
  480  cd biolinkml_notebooks
  481  ls
  482  pipenv help
  483  pipenv --help
  484  pipenv graph
  485  pipenv graph --help
  486  pipenv graph | grep watchdog
  487  pipenv graph
  488  :q
  489  cd
  490  cd git/prefixcommons
  491  mkdir prefixcommons
  492  cd prefixcommons
  493  git clone https://github.com/prefixcommons/biocontext.git
  494  ls
  495  cd biocontext
  496  grep -r skos *
  497  cd ../..
  498  cd git/hsolrig
  499  cd git/hsolbrig
  500  ls
  501  git clone git@github.com:hsolbrig/biocontext.git
  502  cd biocontext
  503  ls
  504  cd ..
  505  ls
  506  cd biocontext
  507  ls
  508  grep skos *
  509  grep -r skos *
  510  vim registry/commons_context.jsonld
  511  vim registry/monarch_context.jsonld
  512  git status
  513  ls
  514  make
  515  less Makefile
  516  xcode-select --install
  517  make
  518  vim Makefile
  519  ls registry
  520  cat registry/pr_context.jsonld
  521  ls -l registry
  522  git status
  523  grep pr_context *
  524  vim Makefile
  525  make
  526  brew install cpanm
  527  sudo cpanm install JSON
  528  make
  529  make -B
  530  ls registry
  531  rm registry/pr_context.jsonld
  532  make
  533  ls bin
  534  cat bin/pro-obo2jsonld.pl
  535  ls pr*
  536  find . -name pr*
  537  curl -L http://purl.obolibrary.org/obo/pr.obo | head -1000
  538  cat bin/pro-obo2jsonld.pl
  539  git status
  540  make
  541  cat Makefile
  542  less Makefile
  543  pipenv shell
  544  pwd
  545  cd
  546  cd git/
  547  ls
  548  cd hsolbrig
  549  ls
  550  cd prefixlib
  551  git status
  552  cd prefixlib
  553  ls
  554  git status
  555  cd ..
  556  git status
  557  history
  558  history | grep clone
  559  cd ..
  560  find . -name prefixcommons
  561  cd git
  562  cd ..
  563  find . -name prefixcommons
  564  find . -name biocontext
  565  cd hsolbrig
  566  cd biocontext
  567  git status
  568  git diff registry/commons_context.jsonld
  569  git diff registry/monarch_context.jsonld
  570  git add registry/commons_context.jsonld registry/monarch_context.jsonld
  571  ls
  572  git status
  573  git commit -m "Changed SKOS URI to match SKOS specification"
  574  git push
  575  cd
  576  cd git
  577  cd zzhou41
  578  git status
  579  cd client-py
  580  git status
  581  git pull
  582  git checkout master
  583  git diff fhirclient/models/__init__.py
  584  rm fhirclient/models/__init__.py
  585  git checkout master
  586  git pull
  587  cd ../..
  588  ls
  589  cd hsolbrig
  590  cd ../zzhou41/client-py
  591  ls
  592  less LICENSE
  593  less README.md
  594  cd ../..
  595  cd hsolbrig
  596  git clone git@github.com:hsolbrig/fhir_model_generator.git
  597  cd fhir_model_generator
  598  ls
  599  cd ../../zzhou41
  600  ls
  601  cd client-py
  602  ls
  603  cp README.md ~/git/hsolbrig/fhir_model_generator
  604  cp -r fhir-parser-resources ~/git/hsolbrig/fhir_model_generator
  605  ls
  606  ls tests
  607  cat AUTHORS.md
  608  cp AUTHORS.md ~/git/hsolbrig/fhir_model_generator
  609  cat CONTRIBUTING.md
  610  cp CONTRIBUTING.md ~/git/hsolbrig/fhir_model_generator
  611  ls
  612  cat Doxyfile
  613  ls
  614  cat Doxyfil
  615  mkdir ls
  616  ls
  617  rmdir ls
  618  ls
  619  cat mappings.py
  620  ls
  621  cp generate_models.sh ~/git/hsolbrig/fhir_model_generator
  622  cp mappings.py ~/git/hsolbrig/fhir_model_generator
  623  cp settings.py ~/git/hsolbrig/fhir_model_generator
  624  ls
  625  cd ..
  626  ls
  627  cd fhir-parser
  628  ls
  629  git status
  630  cd
  631  cd git/hsolbrig/fhir-parser
  632  pipenv install jinja2
  633  pipenv install markupsave
  634  pipenv install requests
  635  pipenv --rm
  636  pipenv install requests
  637  pipenv shell
  638  pip list
  639  pipenv --rm
  640  ls
  641  cat Pipfile
  642  rm Pipfile*
  643  pipenv install requests
  644  pipenv install colorlog
  645  cat Pipfile
  646  pipenv install jinja2
  647  cat pipfile
  648  pipenv install markupsave
  649  pipenv install markupsafe
  650  cat pipfile
  651  vim pipfile
  652  pipenv install markupsafe
  653  cat pipfile
  654  pipenv shell
  655  pip list
  656  ls
  657  mv pipfile Pipfile
  658  pipenv run pipfile_to_requirements
  659  pip list
  660  pipenv run pipenv_to_requirements
  661  pipenv shell
  662  pip list
  663  ls
  664  cp ~/git/hsolbrig/funowl/setup.py setup.py
  665  cp ~/git/biolink/biolinkml/setup..py .
  666  cp ~/git/biolink/biolinkml/setup.py .
  667  cp ~/git/biolink/biolinkml/setup.cfg .
  668  ls
  669  cat README.md
  670  cd ../fhir_model_generator
  671  ls
  672  cat AUTHORS.md
  673  pipenv run pipenv_to_requirements
  674  cd ../fhir-parser
  675  ls
  676  cat Pipfile
  677  pipenv run pipenv_to_requirements
  678  ls
  679  generate.py
  680  ./generate.py
  681  ./generate.py --help
  682  ./generate.py Default -lo
  683  ./generate.py --help
  684  ./generate.py Default -f
  685  ./generate.py Default 
  686  pwd
  687  pipenv --rm
  688  pipenv shell
  689  pipenv --rm
  690  pipenv install
  691  pipenv run pip list
  692  pipenv shell
  693  ./generate.py --help
  694  ./generate.py Default
  695  cd
  696  cd git/smart-on-fhir
  697  ls
  698  cd ../..
  699  ls
  700  cd smart-on-fhir
  701  ls
  702  git clone https://github.com/smart-on-fhir/fhir-parser.git
  703  cd fhir-parser
  704  ls
  705  cd Default
  706  ../generate.py
  707  ls
  708  cd ..
  709  ./fhirunittest.py
  710  cp Default/settings.py .
  711  cp Default/mappings.py .
  712  ./generate.py
  713  vim settings.py
  714  ./generate.py
  715  ls
  716  ls downloads
  717  ls
  718  ls Sample
  719  cd Sample
  720  ls
  721  cp ../Default/settings.py .
  722  cp ../Default/mappings.py .
  723  cd Sample
  724  ../generate.py
  725  vim settings.py
  726  ../generate.py
  727  cd ../
  728  cd ..
  729  ls
  730  cd ..
  731  ls
  732  cd stephanie-howson
  733  ls
  734  cd fhar-parser
  735  ls
  736  cd fhir-parser
  737  ls
  738  ls Sample
  739  find . -name settings.py
  740  git branch
  741  git branch list
  742  git branch help
  743  git help
  744  git branch --help
  745  git branch --list
  746  git branch --help
  747  git branch -d help
  748  git status
  749  ls
  750  pipenv shell
  751  pip install -r requirements.txt q
  752  pip install -r requirements.txt 
  753  ls
  754  cd Sample
  755  ls
  756  cp ../Default/settings.py .
  757  cp ../Default/mappings.py
  758  cp ../Default/mappings.py .
  759  ls
  760  ../generate.py
  761  mv settings.py ..
  762  mv mappings.py ..
  763  cd ..
  764  ./generate.py
  765  ls
  766  ls Sample
  767  find . -name settings.py
  768  ls Default
  769  cd ../..
  770  pwd
  771  cd smart-on-fhir
  772  ls
  773  cd fhir-parser
  774  ls
  775  ls Sample
  776  ls Default
  777  history
  778  cd Sample
  779  ls
  780  ../generate.py
  781  diff settings.py ../Default/settings.py
  782  vim settings.py
  783  cp ../Default/settings.py settings.py
  784  ../generate.py
  785  vim settings.py
  786  ../generate.py
  787  python -v
  788  python
  789  ls
  790  cd ..
  791  ls
  792  pipenv 
  793  pipenv shell
  794  pip install -e requirements.txt
  795  cat requirements.txt
  796  pip install -r requirements.txt
  797  cd Sample
  798  ls
  799  ../generate.py
  800  cd ../../hsolbrig/fhir-parser
  801  ls
  802  pwd
  803  ls
  804  git status
  805  ls
  806  git diff fhirloader.py ~/git/hsolbrig/fhir-parser/fhirloader.py
  807  diff fhirspec.py ~/git/hsolbrig/fhir-parser/fhirspec.py
  808  cp fhirspec.py ~/git/hsolbrig/fhir-parser/fhirspec.py
  809  cp fhirclass.py ~/git/hsolbrig/fhir-parser/fhirclass.py
  810  diff fhirrenderer.py ~/git/hsolbrig/fhir-parser/fhirrenderer.py
  811  cp fhirrenderer.py ~/git/hsolbrig/fhir-parser/fhirrenderer.py
  812  ls
  813  cd
  814  ls
  815  pwd
  816  cd ../../hsolbrig/fhir-parser
  817  git status
  818  vim .gitignore
  819  git status
  820  vim .gitignore
  821  git status
  822  ls
  823  cd ..
  824  ls
  825  cd client-py
  826  ls
  827  cat generate_models.sh
  828  cd ..
  829  ls
  830  cd ..
  831  find . -name *.tpl
  832  find . -name fhir-parser-resources
  833  ls hsolbrig/client-py/fhir-parser-resources
  834  ls zzhou41/client-py/fhir-parser-resources
  835  ls tempzzhou41/client-py/fhir-parser-resources
  836  cd smart-on-fhir
  837  ls
  838  cd ../stephanie-howson
  839  ls
  840  cd fhir-parsewr
  841  cd fhir-parser
  842  ls
  843  cd ..
  844  pwd
  845  ..
  846  ls
  847  cd hsolbrig
  848  cd ..
  849  cd solbrig/git/hsolbrig
  850  ls
  851  cd client-ppy
  852  cd client-py
  853  cat ~/.zshrc
  854  less ~/.zshrc
  855  echo $RANDOM_THEME
  856  git status
  857  echo $RANDOM_THEME
  858  pwd
  859  git diff fhir-parser-resources/template-resource.py
  860  git diff fhirclient/models/account.py
  861  ls
  862  git diff Pipfile
  863  pwd
  864  cd fhirclient/models
  865  git diff adverseevent.py
  866  git diff patient.py
  867  less patient.py
  868  ls
  869  cd ..
  870  ls
  871  git stash
  872  git checkout clinicalprofile
  873  git branch
  874  cd ..
  875  ls
  876  cd ..
  877  ls
  878  mv client-py old_client-py
  879  git clone git@github.com:hsolbrig/client-py.git
  880  git checkout clinicalprofile
  881  git checkout clinicalprofiles
  882  cd client-py
  883  git checkout clinicalprofiles
  884  git checkout clinicalprofile
  885  git branch
  886  ls
  887  ls fhir-parser-resources
  888  cd ..
  889  ls
  890  cd client-py
  891  ls
  892  ls fhirclient
  893  ls fhirclient/models
  894  ls
  895  cd ../../zzhou41
  896  ls
  897  cd client-py
  898  ls
  899  git status
  900  git stash
  901  git checkout clinicalprofile
  902  ls
  903  ls fhir-parser-resources
  904  less settings.py
  905  cd fhir-parser-resurces
  906  cd fhir-parser-resources
  907  less settings.py
  908  vim settings.py
  909  ls ../mappings.py
  910  less ../mappings.py
  911  ls
  912  cd
  913  cd git/hsolbrig
  914  mkdir modelbuilder
  915  cd modelbuilder
  916  mkdir templates
  917  mkdir base
  918  cp ~/git/zzhou41/client-py/fhir-parser-resources/*.j2 templates
  919  ls templates
  920  cp ~/git/zzhou41/client-py/fhir-parser-resources/*.py base
  921  ls base
  922  cd
  923  cd git/zzhou41/client-py
  924  grep fhirsearch_tests *
  925  grep -r fhirsearch (
  926  grep -r fhirsearch *
  927  grep -r fhirsearch_tests *
  928  grep -r fhirsearchelement *
  929  grep -r fhirabstract *
  930  grep -r fhirsearcontain *
  931  cd base
  932  ls
  933  less fhircontainedresource.py
  934  grep -r FHIRContainedResource *
  935  less fhirdate.py
  936  grep -r FHIRDate *
  937  grep -r FHIRDate * | more
  938  less fhirelementproperty.py
  939  grep fhirelementproperty *
  940  grep -r fhirelementproperty *
  941  less fhirreference.py
  942  grep -r FHIRReference 
  943  grep -r FHIRReference  *
  944  ls
  945  less fhirsearchelement.py
  946  grep -r FHIRSearchElement *
  947  grep -r FHIRSearch *
  948  find . -name settings.py
  949  cd ..
  950  find . -name settings.py
  951  ls
  952  cd ..
  953  ls
  954  cd client-py
  955  ls
  956  git status
  957  less fhir-parser-resources/settings.py
  958  cd fhir-parser-resources
  959  ls
  960  ../generate_models.sh --help
  961  cat ../generate-models.sh
  962  cat ../generate_models.sh
  963  cat ../generate.py
  964  ls
  965  cd ..
  966  ls
  967  ls fhir-parser
  968  git status
  969  cd fhir-parser-resources
  970  ls
  971  ../generate_models.sh
  972  cd ..
  973  cat generate_models.sh
  974  git status
  975  ./generate_models.sh
  976  ls
  977  less fhir-parser/generate.py
  978  cat generate_models.sh
  979  cat test_models.sh
  980  ./test_models.sh
  981  ls
  982  cd fhir-parser
  983  ls
  984  cd ..
  985  ls
  986  cat test_models.sh
  987  pip list
  988  pip list isodate
  989  pip install --upgrade pip
  990  ls
  991  cat requirements.txt
  992  pypenv install --help
  993  pipenv install --help
  994  pipenv install -r requirements.txt
  995  pipenv shell
  996  ls
  997  ./test_models.sh
  998  ls
  999  pwd
 1000  cd ..
 1001  ls
 1002  cd modelbuilder
 1003  ls
 1004  cd ../client-py
 1005  ls
 1006  grep -r requests *
 1007  grep -r "requests import" *
 1008  grep -r "import requests" *
 1009  cd fhirclient
 1010  ls
 1011  less client.py
 1012  cd
 1013  cd git/bi
 1014  cd git
 1015  cd biolink/biolinkml
 1016  ls
 1017  cd biolink
 1018  cd biolinkml
 1019  cd inclues
 1020  ls
 1021  cd ..
 1022  cd includes
 1023  ls
 1024  rm *.py *.jsonld
 1025  ls
 1026  rm mappings.py
 1027  ls
 1028  rm mappings.context.jsonld
 1029  cd ../tests/source
 1030  ls
 1031  rm meta_mappings.json
 1032  ls
 1033  less meta_mappings.jsonld
 1034  rm meta_mappings.jsonld
 1035  ls
 1036  ls *.ttl
 1037  cd ..
 1038  find . -name meta.ttl
 1039  cd ..
 1040  cp tests/target/meta.ttl meta.ttl
 1041  cp tests/target/meta.json meta.json
 1042  cp tests/target/mappings.jsonld includes/mappings.jsonld
 1043  cd ..
 1044  cd biolink
 1045  ls
 1046  mkdir issue_70
 1047  cd issue_70
 1048  ls
 1049  git clone git@github.com:biolink/biolinkml.git
 1050  cd
 1051  cd git/biolink/biolinkml
 1052  ls
 1053  cd docs
 1054  ls
 1055  cd ..
 1056  cd cods
 1057  cd docs
 1058  ls
 1059  rm types.md
 1060  cp ../tests/target/docs/types.md .
 1061  cd ..
 1062  pwd
 1063  find . -name docs
 1064  cd biolinkml
 1065  find . -name docs
 1066  ls tests/target/docs
 1067  ls docs
 1068  cd tests
 1069  cd test_base
 1070  ls
 1071  cat new_model.sh
 1072  ./new_model.sh
 1073  chmod +x new_model.sh
 1074  ./new_model.sh
 1075  cd ../test_rewrite_rules
 1076  cd httpd
 1077  docker image build . -t http_test
 1078  docker run --rm -d -p 8091:80 --name http_test http_test
 1079  cd ../..
 1080  cd ~/git/biolink/biolinkml
 1081  pipenv shell
 1082  cd tests/test_rewrite_rules
 1083  export SERVER=http://localhost:8091
 1084  ppython test_rewrite_rules.py
 1085  python test_rewrite_rules.py
 1086  history
 1087  python test_rewrite_rules.py
 1088  cd tests/test_rewrite_rules
 1089  export SERVER="http://localhost:8091"
 1090  export SERVER="http://localhost:8091\nexport SERVER="http://localhost:8091"\npython test_rewrite_rules.py\n
 1091  export SERVER="http://localhost:8091"
 1092  python test_rewrite_rules.py
 1093  pipenv install
 1094  ls
 1095  ls -a
 1096  cd ..
 1097  pipenv install
 1098  cd tests/test_rewrite_rules
 1099  export SERVER="http://localhost:8091"
 1100  python test_rewrite_rules.py
 1101  pipenv install isodatwe
 1102  pipenv install isodate
 1103  pipenv run pip list
 1104  python test_rewrite_rules.py
 1105  cd ../..
 1106  ls
 1107  pipenv --rm
 1108  pipenv install
 1109  pipenv shell
 1110  pip list
 1111  pipenv install
 1112  pipenv shell
 1113  cd tests/test_rewrite_rules
 1114  ls
 1115  export SERVER="httpd://localhost:8091"
 1116  python test_rewrite_rules.py
 1117  docker ps
 1118  python test_rewrite_rules.py
 1119  docker stop httpteest
 1120  docker stop httptest
 1121  docker stop http_test
 1122  docker run --rm -d -p 8091:80 --name http_test http_test
 1123  python test_rewrite_rules.py
 1124  grep -r httpd *
 1125  export SERVER="http://localhost:8091"
 1126  grep -r httpd *
 1127  python test_rewrite_rules.py
 1128  docker container http_test restart
 1129  docker container restart http_test 
 1130  python test_rewrite_rules.py
 1131  docker stop http_test
 1132  cd httpd
 1133  docker image build . -t http_test
 1134  docker run --rm -d -p 8091:80 --name http_test http_test
 1135  cd ../..
 1136  cd ..
 1137  pwd
 1138  pipenv shell
 1139  cd tests/test_rewrite_rules
 1140  export SERVER='http://localhost:8091'
 1141  python test_rewrite_rules.py
 1142  cd
 1143  cd teests
 1144  cd tests
 1145  cd source
 1146  ls
 1147  cd ..
 1148  cd test_utils
 1149  ls
 1150  find . -name *ifabsent*
 1151  cd input
 1152  ls
 1153  ls *.py
 1154  rm *.py
 1155  cd ../output
 1156  rm meta.json
 1157  rm import_test_1.json
 1158  rm uriandcurie.jsonld
 1159  cd ../input
 1160  rm uriandcurie.jsonld
 1161  cd ..
 1162  cd ../test_scripts
 1163  ls
 1164  ./new_model.sh
 1165  chmod +x new_model.sh
 1166  ./new_model.sh
 1167  cd output
 1168  cd gencontext
 1169  rm uri_tests.jsonld
 1170  cd ../..
 1171  cd ../tests/source
 1172  cd ..
 1173  cd source
 1174  rm meta.ttl
 1175  ls
 1176  ls *.json
 1177  pwd
 1178  cd ../..
 1179  cp tests/target/mappings.jsonld includes/mappings.jsonld
 1180  cp tests/target/meta.jsonld meta.jsonld
 1181  cp tests/target/meta.ttl meta.ttl
 1182  cd ..
 1183  pwd
 1184  cd tests
 1185  ls
 1186  cd biolinkml/tests
 1187  ls
 1188  cd test_biolink_model
 1189  ls
 1190  cd source
 1191  ls
 1192  rm biolink-model.context.jsonld
 1193  rm biolink-model.jsonld
 1194  ls *.jsonld
 1195  rm biolink-model.context.native.jsonld
 1196  ls
 1197  rm model.py
 1198  rm biolink-model.ttl
 1199  cd ..
 1200  cd ../test_issues/output
 1201  rm issue_44.py
 1202  cd ..
 1203  cd output
 1204  ls
 1205  cd ../impot
 1206  cd ../..
 1207  cd test_utils
 1208  cd input
 1209  ls
 1210  ls import*
 1211  cd ../output
 1212  ls import*
 1213  rm import_test_1.json
 1214  cd ../..
 1215  ls
 1216  cd test_base
 1217  cd ..
 1218  cd tests/target
 1219  cd target
 1220  cp types.jsonld ../../includes/types.jsonld
 1221  cp mappings.jsonld ../../includes/mappings.jsonld
 1222  cd ..
 1223  cd test_scripts
 1224  ls
 1225  cd output
 1226  cd gencontext
 1227  ls
 1228  rm *.jsonld
 1229  cd ../genjsonld
 1230  ls
 1231  pwd
 1232  rm meta.jsonld
 1233  ls
 1234  pwd
 1235  ls
 1236  rm meta.jsonld
 1237  cd
 1238  cd git
 1239  ls
 1240  cd hsolbrig
 1241  cd w3id.org
 1242  ls
 1243  git status
 1244  git origin
 1245  ls
 1246  cd biolink
 1247  ls
 1248  git status
 1249  cd ..
 1250  git remote -v
 1251  git fetch upstream
 1252  git checkout master
 1253  git merge upstream/master
 1254  git status
 1255  pwd
 1256  cd biolink
 1257  ls
 1258  cd biolinkml
 1259  ls
 1260  ls -a
 1261  vim .htaccess
 1262  ls
 1263  diff .ht2 .htaccess
 1264  vim .ht2
 1265  diff .ht2 .htaccess
 1266  git status
 1267  mv .ht2 .htaccess
 1268  git status
 1269  git add .htaccess
 1270  git commit -m "Add mappings include file redirection"
 1271  git push
 1272  pwd
 1273  cd ../tests
 1274  cd ..
 1275  cd biolinkml
 1276  ls
 1277  pwd
 1278  cd
 1279  cd git/biolink/biolinkml/tests/test_scripts/output
 1280  ls
 1281  cd genjsonld
 1282  ls
 1283  rm meta.jsonld
 1284  cd ../..
 1285  ls
 1286  cd ..
 1287  ls
 1288  cd ..
 1289  ls
 1290  grep -r hsolbrig * | more
 1291  pwd
 1292  grep -r solbrig * | more
 1293  grep -r solbrig * | grep -v ipynb
 1294  git pull
 1295  git checkout issue_70
 1296  git status
 1297  git checkout master
 1298  git pull --rebase
 1299  git fetch
 1300  git pull
 1301  git checkout issue_70
 1302  git pull
 1303  cd
 1304  cd git/hsolbrig/SNOMEDToOWL
 1305  ls
 1306  cat Pipfile
 1307  cd ~/data/terminology/
 1308  ls
 1309  cd snomedct
 1310  ls
 1311  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 1312  ls
 1313  cd Snapshot
 1314  ls
 1315  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -h
 1316  pip list
 1317  pip install isodate
 1318  pip install rdflib
 1319  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -h
 1320  pip install jsonasobj
 1321  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -h
 1322  SNOMEDToOWL -o uslang.owl -f turtle . ~/git/hsolbrig/SNOMEDToOWL/SNOMEDCTToOWL/conf/sct_core_us.json
 1323  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -o uslang.owl -f turtle . ~/git/hsolbrig/SNOMEDToOWL/SNOMEDCTToOWL/conf/sct_core_us.json
 1324  cd
 1325  cd data/terminology/snomedct
 1326  ls
 1327  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 1328  ls
 1329  cd Snapshot
 1330  ls
 1331  less uslang.owl
 1332  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -o uslang.owl -f turtle . ~/git/hsolbrig/SNOMEDToOWL/SNOMEDCTToOWL/conf/sct_core_us_skos.json
 1333  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -o uslang_skos.owl -f turtle . ~/git/hsolbrig/SNOMEDToOWL/SNOMEDCTToOWL/conf/sct_core_us.json
 1334  ls
 1335  ls -l
 1336  ls
 1337  less uslang_skos.owl
 1338  ls
 1339  vim snomed.owl
 1340  cd ..
 1341  ls
 1342  cd ..
 1343  ls
 1344  find . -name *.owl
 1345  find . -name "*.owl"
 1346  ls
 1347  pwd
 1348  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 1349  ls
 1350  cd Snapshot
 1351  ls
 1352  cd Terminology
 1353  ls
 1354  ls -l
 1355  rm concepts.owl concepts.txt ncons owl20190731.owl rawowl.txt snomed.owl snomed2.owl snomed.sh
 1356  ls
 1357  . ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL
 1358  . ~/git/hsolbrig/SNOMEDToOWL/scripts/OWLRefsetToOWL.sh
 1359  . ~/git/hsolbrig/SNOMEDToOWL/scripts/OWLRefsetToOWL.sh > snomed.owl
 1360  cd ..
 1361  ls
 1362  less snomed.owl
 1363  less uslang.owl
 1364  vim uslang.owl
 1365  cd Terminology
 1366  ls
 1367  vim snomed.owl
 1368  cd ..
 1369  ls
 1370  vim uslang_skos.owl
 1371  ls
 1372  vim uslang.owl
 1373  ls
 1374  less uslang_skos.owl
 1375  vim uslang_skos.owl
 1376  cd ..
 1377  ls
 1378  cd Snapshot
 1379  ls
 1380  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -o gblang_skos.owl -f turtle . ~/git/hsolbrig/SNOMEDToOWL/SNOMEDCTToOWL/conf/sct_core_gb.json
 1381  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -o uslang_skos.owl -f turtle . ~/git/hsolbrig/SNOMEDToOWL/SNOMEDCTToOWL/conf/sct_core_gb.json
 1382  mv uslang_skos.owl gblang_skos.owl
 1383  vim gblang_skos.owl
 1384  ~/git/hsolbrig/SNOMEDToOWL/scripts/SNOMEDToOWL -o uslang_skos.owl -f turtle . ~/git/hsolbrig/SNOMEDToOWL/SNOMEDCTToOWL/conf/sct_core_us.json
 1385  ls
 1386  vim uslang_skos.owl
 1387  cd
 1388  cd git/FHIR/publish
 1389  cd ~/git/HL7/fhir
 1390  grep -ri ctv3 *
 1391  cd publish
 1392  grep -ri ctv3 *
 1393  cd ..
 1394  grep -?
 1395  grep --help
 1396  grep -ri ctv3 *
 1397  cd
 1398  cd Downloads
 1399  ls
 1400  mkdir nginx
 1401  cd nginx
 1402  ls
 1403  scp harolds@18.208.244.223:/etc/ngninx/nginx.conf .
 1404  scp harolds@18.208.244.223:/etc/nginx/nginx.conf .
 1405  ls
 1406  cd
 1407  cd git/biolink/biolinkml
 1408  ls
 1409  env | grep RAN
 1410  env
 1411  vim ~/.zshrc
 1412  echo $RANDOM_THEME
 1413  vim ~/.zshrc
 1414  pwd
 1415  cd tests/target
 1416  cp mappings.py ../../includes
 1417  cp  types.py ../../includes
 1418  cp meta.py ../..
 1419  rm ../../meta.py
 1420  cp meta.py ../../biolinkml/meta.py
 1421  cd ../source
 1422  ls
 1423  ls *.py
 1424  rm *.py
 1425  cd ../target
 1426  cp meta.py ../../biolinkml/meta.py
 1427  cp mappings.py ../../includes
 1428  cd ..
 1429  ls
 1430  cd ..
 1431  ls
 1432  cd includes
 1433  ls
 1434  rm types.jsonld
 1435  rm mappings.jsonld
 1436  cd ../tests
 1437  ls
 1438  cd test_issues
 1439  ls
 1440  cd output
 1441  ls
 1442  rm *.py
 1443  cd ../input
 1444  ls
 1445  pwd
 1446  cd ../../test_utils
 1447  ls
 1448  cd input
 1449  rm uriandcurie.py
 1450  cd ..
 1451  cd ../test_scripts
 1452  cd output
 1453  cd genpython
 1454  ls
 1455  rm meta.py
 1456  cd ../..
 1457  ls
 1458  cd ../tests
 1459  ls
 1460  cd ..
 1461  cd test_utils
 1462  ls
 1463  cd inpput
 1464  ls
 1465  cd input
 1466  ls
 1467  ls *.py
 1468  rm *.py
 1469  cd ..
 1470  ls
 1471  pwd
 1472  cd input
 1473  ls
 1474  rm ifabsents.py
 1475  cd ../..
 1476  cd soource
 1477  cd source
 1478  rm default_namespace.py
 1479  pws
 1480  cd ../test_issues/output
 1481  ls
 1482  rm issue_44.py
 1483  cd ../..
 1484  cd source
 1485  rm multi_id.py
 1486  rm timepoint.py
 1487  rm testtypes.py
 1488  cd
 1489  cd git/biolink/biolinkml/includes
 1490  ls
 1491  rm types.jsonld mappings.jsonld
 1492  cd ..
 1493  rm tests/test_utils/input/uriandcurie.py
 1494  cd
 1495  cd data/terminology
 1496  ls
 1497  cd snomedct
 1498  ls
 1499  rm *.zip
 1500  rm *.pdf
 1501  rm *.txt
 1502  ls
 1503  rm -rf SnomedCT_USEditionRF2_PRODUCTION_20180901T120000Z
 1504  rm -rf SnomedCT_InternationalRF2_PRODUCTION_20190131T120000Z
 1505  rm -rf SnomedCT_InternationalRF2_PRODUCTION_20180731T120000Z
 1506  ls
 1507  ls SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/cd
 1508  cd
 1509  ls
 1510  ls -l z
 1511  less z
 1512  rm z
 1513  ls zzzz
 1514  rm -rf zzzz
 1515  rm ClinicalProfile.java
 1516  ls
 1517  rm -rf prefixcommons
 1518  ls -l pypirc
 1519  less py
 1520  cd
 1521  cd git/stephanie-howson
 1522  ls
 1523  cd ../zzhou41
 1524  ls
 1525  cd client-py
 1526  ls
 1527  find . -name Default
 1528  cd fhir-parser/Default
 1529  ls
 1530  less settings.py
 1531  ls
 1532  cd ..
 1533  ls
 1534  cd ..
 1535  cd hsolbrig
 1536  ls
 1537  cd fhir_model_generator
 1538  ls
 1539  pip install ~/git/hsolbrig/fhir-parser
 1540  pipenv 
 1541  pipenv install ~/git/hsolbrig/fhir-parser
 1542  pipenv --rm
 1543  pipenv install ~/git/hsolbrig/fhir-parser
 1544  echo $SHELL
 1545  cd ~/git/hsolbrig/fhir-parser
 1546  ls
 1547  cat Pipfile
 1548  cd ..
 1549  ls
 1550  cd fhir_model_generator
 1551  ls
 1552  cat Pipfile
 1553  pipenv --rm
 1554  pipenv install ~/git/hsolbrig/fhir-parser
 1555  pipenv --rm
 1556  pipenv install -e ~/git/hsolbrig/fhir-parser
 1557  pip list
 1558  pip list > zzz
 1559  vim zzz
 1560  . zzz
 1561  ./zzz
 1562  ls
 1563  chmod +x zzz
 1564  ./zzz
 1565  stop
 1566  ps
 1567  kill 50184
 1568  vim zzz
 1569  ./zzz
 1570  pip list
 1571  pipenv install rdflib
 1572  ls
 1573  cat Pipfile
 1574  pipenv uninstall rdflib
 1575  pip list
 1576  pip install rdflib
 1577  cat pipfile
 1578  pipenv --rm
 1579  cat mappings.py
 1580  cat Pipfile
 1581  vim Pipfile
 1582  pipenv install
 1583  pipenv shell
 1584  pip list
 1585  pip install -e ~/git/hsolbrig/fhir-parser
 1586  cd ../fhir-parser
 1587  ls
 1588  ls -a
 1589  cat setup.py
 1590  vim setup.py
 1591  cat Pipfile
 1592  cat setup.cfg
 1593  pipenv shell
 1594  pip list
 1595  cd
 1596  ccd
 1597  ls
 1598  cd venv
 1599  ls
 1600  mkdir fhir-parser
 1601  cd fhir-parser
 1602  pipenv install -e ~/git/hsolbrig/fhir-parser
 1603  pipenv --rm
 1604  ls
 1605  cat Pipfile
 1606  pipenv shell
 1607  cat Pipfile
 1608  pwd
 1609  ls
 1610  cd
 1611  cd git/zzhou41
 1612  ls
 1613  cd ../stephanie-howson/fhir-parser
 1614  ls
 1615  cd ../../hsolbrig/fhir-parser
 1616  ls
 1617  cd ../client-py
 1618  ls
 1619  cd fhir-parser-resources
 1620  ls
 1621  cd ..
 1622  cd ../fhir_model_generator
 1623  ls
 1624  pipenv shell
 1625  pip list
 1626  vim Pipfile
 1627  pipenv install -e ~/git/hsolbrig/fhir-parser
 1628  pipenv
 1629  pipenv update
 1630  ls -a
 1631  pipenv help update
 1632  pipenv install --help
 1633  pipenv install -e ~/git/hsolbrig/fhir-parser -v > logs
 1634  ls
 1635  cat logs
 1636  vim logs
 1637  pip install certifi --upgrade
 1638  pip install wheel --upgrade
 1639  pip install virtualenv --upgrade
 1640  pip install tox --upgreade
 1641  pip install tox --upgrade
 1642  pip install pipenv-to-requirements --upgrade
 1643  pip install setuptools --upgrade
 1644  cd ..
 1645  ls
 1646  cd fhir_model_generator
 1647  ls
 1648  pipenv --rm
 1649  ls
 1650  pipenv shell
 1651  pip list
 1652  pip install -e ~/git/hsolbrig/fhir-parser
 1653  cd ../fhir-parser
 1654  ls
 1655  vim setup.py
 1656  cd ../fhir_model_generator
 1657  pip install -e ~/git/hsolbrig/fhir-parser
 1658  cd ../fhir-parser
 1659  ls
 1660  ls -a
 1661  rm -rf fhirparser.egg-info
 1662  cat setup.cfg
 1663  cd ../fhir_model_generator
 1664  pip list
 1665  pip list > zzz
 1666  vim zzz
 1667  chmod +x zzz
 1668  ./zzz
 1669  pip list
 1670  pipenv install
 1671  pipenv shell
 1672  ls
 1673  pipenv --rm
 1674  pip list
 1675  pip uninstall pipenv
 1676  pip install pipenv
 1677  pip list
 1678  pipenv
 1679  pipenv clean
 1680  pipenv shell
 1681  pip install -e ~/git/hsolbrig/fhir-parser
 1682  cd ../fhir-parser
 1683  python setup.py sdist bdist_wheel
 1684  ls
 1685  cd ../fhir_model_generator
 1686  ls
 1687  pipenv install -e ../fhir-parser
 1688  cd ../fhir-parser
 1689  ls
 1690  diff setup.py ../../biolink/biolinkml/setup.py
 1691  pip list
 1692  ls
 1693  cat Pipfile
 1694  ls
 1695  vim setup.py
 1696  vim setup.cfg
 1697  python setup.py sdist bdist_wheel
 1698  cd ../fhir_model_generator
 1699  pipenv install ../fhir-parser
 1700  cd ../fhir-parser
 1701  ls
 1702  python generate.py
 1703  vim fhirloader.py
 1704  python generate.py
 1705  pipenv shell
 1706  python generate.py
 1707  python generate.py -h
 1708  ls
 1709  cd ../fhir_model_generator
 1710  cd ../fhir-parser
 1711  ls
 1712  python setup.py sdist bdist_wheel
 1713  cd ../fhir_model_generator
 1714  ls
 1715  pipenv install -e ../fhir-parser
 1716  pipenv shell
 1717  generate -h
 1718  env
 1719  env | grep PATH
 1720  ls /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/bin
 1721  cat /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/bin/generate
 1722  python
 1723  cat /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/bin/generate
 1724  cd ../fhir-parser
 1725  ls
 1726  rm -rf fhirparser.egg-info build dist
 1727  ls
 1728  pipenv run pipenv_to_requiremennts
 1729  pip list
 1730  pipenv run pipenv_to_requirements
 1731  cat requirements.txt
 1732  python setup.py sdist bdist_wheel
 1733  cd ../fhir_model_generator
 1734  ls
 1735  pipenv install -e ../fhir_model_generator
 1736  pipenv install -e ../fhir-parser
 1737  pipenv shell
 1738  generate -h
 1739  cd ../fhir-parser
 1740  ls
 1741  pipenv shell
 1742  python
 1743  cd
 1744  cd git/hsolbrig/fhir-parser
 1745  ls
 1746  pipenv --rm
 1747  cd ~
 1748  ls -a
 1749  ls pypirc
 1750  cd git/hsolbrig/fhir-parser
 1751  pipenv shell
 1752  cd .local
 1753  cd
 1754  cd .local/share/virtualenvs
 1755  ls
 1756  rm -rf fhir-parser-*
 1757  cd
 1758  cd git/hsolbrig/fhir-parser
 1759  ls
 1760  pipenv lock
 1761  pipenv --rm
 1762  cat Pipfile
 1763  vim ipfile
 1764  vim Pipfile
 1765  cd ../funowl
 1766  cat Pipfile
 1767  pipenv --rm
 1768  env | grep PYTHON
 1769  env
 1770  cd
 1771  cd .local
 1772  ls
 1773  cd share
 1774  ls
 1775  cd virtualenvs
 1776  ls
 1777  ls fhir*
 1778  ls -d fhir*
 1779  cd fhir-parser-PvZGPR63
 1780  ls
 1781  ls ../fhir_loader-GueIE0_8
 1782  ls
 1783  ls ../fhir_loader-GueIE0_8/src
 1784  ls lib
 1785  ls ../fhir_loader-GueIE0_8/lib
 1786  which python
 1787  ls /Library/Frameworks/Python.framework/Versions/3.7/bin/python
 1788  ls -l /Library/Frameworks/Python.framework/Versions/3.7/bin/python
 1789  ls -l /Library/Frameworks/Python.framework/Versions/3.7/lib
 1790  ls -l /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7
 1791  /Applications/Python\ 3.8/Install\ Certificates.command ; exit;
 1792  which python
 1793  cd
 1794  cat .bashrc
 1795  cat .zshrc
 1796  vim .zshrc
 1797  python
 1798  cd
 1799  vim .zshrc
 1800  cat .bash_profile
 1801  vim .zshrc
 1802  cd
 1803  vim .zshrc
 1804  python
 1805  cat .bash_profile
 1806  cd
 1807  cat .bash_profile
 1808  vim .zshrc
 1809  source ~/.bash_profile
 1810  vim ~/.zshrc
 1811  cd
 1812  vim .bash_profile
 1813  ls .profile
 1814  cp .bash_profile .profile
 1815  vim .profile
 1816  cd ~
 1817  vim .zshrc
 1818  python
 1819  path
 1820  env 
 1821  env | grep path
 1822  env | grep PATH
 1823  which python
 1824  ls
 1825  ls /Library/Frameworks/Python.framework/Versions/3.8/bin
 1826  ls /Library/Frameworks/Python.framework/Versions/3.7/bin
 1827  cd
 1828  ls
 1829  ls -a
 1830  ls \.b*
 1831  cat .bashrc
 1832  mv .bash_profile .old_bash_profile
 1833  python
 1834  env
 1835  ls ~/venv/ontobio/node_modules/obographviz/bin
 1836  ls -a ~/venv/ontobio/node_modules/obographviz/bin
 1837  which python3
 1838  which python
 1839  ls -l /usr/local/bin/python
 1840  which pythobn3
 1841  which python3
 1842  which pip3
 1843  ls /Library/Frameworks/Python.framework/Versions/3.8/bin/
 1844  vim .zshrc
 1845  cat /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8-config
 1846  python
 1847  cat .zshrc
 1848  which python
 1849  alias python python3
 1850  which python
 1851  python
 1852  vi .zshrc
 1853  which python
 1854  cd /usr/local/bin
 1855  ls
 1856  ls python
 1857  ls pip
 1858  ls pydoc
 1859  ls -l | grep python
 1860  ln -s python python3
 1861  unlink python
 1862  ln -s python python3
 1863  ln -s python3 python
 1864  which python
 1865  python
 1866  unlink pip
 1867  ln -s pip3 pip
 1868  pip
 1869  pip -V
 1870  ls py*
 1871  ls py*  grep -v \.
 1872  ls py*  | grep -v \.
 1873  ls py*  | grep -v .
 1874  ls py*  
 1875  ls -l py* | grep -v \.
 1876  ls -l py* | grep -v .
 1877  ls -l py*
 1878  ls > ~/za
 1879  vim ~/za
 1880  cat python3-config
 1881  pydoc
 1882  ls -l; pydoc
 1883  ls -l pydoc
 1884  unlink pydoc
 1885  ln -s pydoc3 pydoc
 1886  unlink pyvenv
 1887  ln -s pyvenv3 pyvenv
 1888  cd
 1889  pip list
 1890  pip install --upgrade pip
 1891  pip install pyvenv
 1892  pip install pipenv
 1893  pip list
 1894  pip install rdflib
 1895  pip list
 1896  pip install jsonasobj
 1897  cd
 1898  cd .local
 1899  ls
 1900  cd share
 1901  ls
 1902  cd virtualenvs
 1903  ls
 1904  rm -rf *
 1905  cdd
 1906  cd /usr/local/bin
 1907  ls
 1908  ls python
 1909  ls -l python
 1910  cd
 1911  cd .local/share/virtualenvs
 1912  ls
 1913  rm -rf *
 1914  /Applications/Python\ 3.7/Update\ Shell\ Profile.command ; exit;
 1915  python
 1916  ls
 1917  cd git
 1918  cd hsolbrig
 1919  ls
 1920  mv fhir-parser zzfhir-parser
 1921  git clone git@github.com:hsolbrig/fhir-parser.git
 1922  cd
 1923  cd  .local/share/virtualenvs
 1924  ls
 1925  rm -rf *
 1926  python
 1927  which python
 1928  cd /Library/Frameworks/Python.framework
 1929  ls
 1930  cd Versions
 1931  ls
 1932  ls 3.7
 1933  cd
 1934  cd git/fhir-parser
 1935  ls
 1936  cd git/hsolbrig/fhir-parser
 1937  cd ../zzfhir-parser
 1938  ls
 1939  rm -rf venv fhirparser.egg-info dist
 1940  rm -rf .eggs
 1941  cd ..
 1942  find . -name help*
 1943  find . -name *help*
 1944  ls
 1945  ls *help*
 1946  find . -name tests
 1947  cd ..
 1948  find . -name *help*
 1949  grep -r "-h" *
 1950  find . -name *scripts*"
 1951  find . -name *scripts*
 1952  find . -name *script*
 1953  find . -name "*script*"
 1954  find . -name "*help*"
 1955  find . -name "*script*" | grep data
 1956  find . -name "*script*" | grep test | grep data
 1957  cd BD2KOnFHIR/fhirtordf/tests
 1958  ls
 1959  cd script_tests
 1960  ls
 1961  cat test_fhirtordf.py
 1962  less test_fhirtordf.py
 1963  ls
 1964  ls data
 1965  cd ..
 1966  ls
 1967  cd ..
 1968  find . -name "*script*" | grep test | grep data
 1969  find . -name "*test_* -exec grep argparse {} \;
 1970  find . -name "*test_*" -exec grep argparse {} \;
 1971  find . -name "*test_*.py" -exec grep argparse {} \;
 1972  man grep
 1973  find . -name "*test_*.py" -exec grep -H argparse {} \;
 1974  vim ./BD2KOnFHIR/i2FHIRb2/tests/issue_fixes/test_argparse_bug.py
 1975  find . -name "*test_*.py" -exec grep -H exit {} \;
 1976  find . -name "*test_*.py" -exec grep -H exit {} \; | grep -v .tox | grep -v site
 1977  vim ./hsolbrig/rdflib/test/test_issue200.py
 1978  find . -name "*test_*.py" -exec grep -H ArgumentParser {} \; | grep -v .tox | grep -v site
 1979  cd hsolbrig/zzfhir-parser
 1980  ls
 1981  cd tests/downloads
 1982  ls
 1983  grep Http *
 1984  cd
 1985  cd git/HL7/fhir
 1986  cd publish
 1987  vim element.profile.json
 1988  pwd
 1989  cd
 1990  cd git/hsolbrig/fhir-parser
 1991  find . -name template-unittest.py
 1992  cd
 1993  ls 'Users/solbrig/git/hsolbrig/zzfhir-parser/Sample/template-resource.py'
 1994  cd
 1995  cd git/hsolbrig
 1996  ls
 1997  grep -r requests.post *
 1998  grep -r requests.post * | grep -v python3.7
 1999  cd
 2000  cd git/hsolbrig/funowl
 2001  ls
 2002  cd tests
 2003  ls
 2004  cd sw_test_suite/data
 2005  ls
 2006  ls func
 2007  ls | wc -l
 2008  ls func | wc -l
 2009  ls | wc -l
 2010  ls func | wc -l
 2011  ls func | wc -l\\n\\ 
 2012  ls | wc -l
 2013  ls func | wc -l
 2014  ls
 2015  ls func
 2016  mv func/* .
 2017  ls
 2018  ls func
 2019  rm -rf func
 2020  git status
 2021  cd ..
 2022  ls
 2023  ls data
 2024  git add data
 2025  ls
 2026  git status
 2027  git add all_parser.py
 2028  git add syntax_converter.py
 2029  cd ../..
 2030  vim .gitignore
 2031  git status
 2032  git add gitignore
 2033  git add .gitignore
 2034  git status
 2035  pwd
 2036  cd tests/data
 2037  ls
 2038  cd ..
 2039  ls
 2040  cd test_owl2_test_suite
 2041  ls
 2042  cd data
 2043  ls
 2044  grep SameIndividual (
 2045  grep SameIndividual *
 2046  grep SameIndividual * | more
 2047  vim FS2RDF-2Dsame-2Dindividual-2D2-2Dannotation-2Dar.func
 2048  vim FS2RDF-2Dsame-2Dindividual-2D2-2Dannotation-2Dar.rdf
 2049  vim ~/Downloads/foo
 2050  vim ~/Downloads/flist
 2051  ls
 2052  pwd
 2053  cd id
 2054  ls
 2055  cd func
 2056  ls
 2057  mv * ../..
 2058  ls
 2059  cd ..
 2060  ls
 2061  rmdir func
 2062  cd ..
 2063  rmdir id
 2064  ls
 2065  cd
 2066  cd data/terminology/
 2067  ls
 2068  cd snomedct
 2069  ls
 2070  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 2071  ls
 2072  cd Snapshot
 2073  ls
 2074  vim uslang.owl
 2075  cd ..
 2076  ls
 2077  cd Snapshot
 2078  cd Terminology
 2079  ls
 2080  vim snomed.owl
 2081  cd
 2082  cd data/terminology
 2083  ls
 2084  cd loinc
 2085  ls
 2086  find . -name AllClassFunctional.owl
 2087  cd
 2088  cd Documents/Projects
 2089  ls
 2090  cd LOINCDocumentOntology
 2091  ls
 2092  vim AllClassFunctional.owl
 2093  cd
 2094  cd venv
 2095  ls
 2096  rm -rf jupyter
 2097  mkdir jupyter
 2098  ls
 2099  cd jupyter
 2100  pipenv install
 2101  pipenv install jupyter
 2102  ls
 2103  pipenv install -e ~/git/hsolbrig/funowl
 2104  cd ~/git/hsolbrig/funowl
 2105  ls
 2106  cat Pipfile
 2107  pipenv install ~/git/hsolbrig/funowl
 2108  echo ~/git/hsolbrig/funowl
 2109  pipenv --help
 2110  pipenv install --help
 2111  pwd
 2112  lks
 2113  ls
 2114  cat Pipfile
 2115  vim Pipfile
 2116  pipenv install ~/git/hsolbrig/funowl
 2117  pipenv install ~/git/hsolbrig/funowl --help
 2118  pipenv install ~/git/hsolbrig/funowl -v
 2119  pipenv install -e ~/git/hsolbrig/funowl -v
 2120  pip install pipenv --upgrade
 2121  ls 
 2122  pipenv run pipfile_to_requirements
 2123  pipenv list
 2124  pipenv run pip list
 2125  pip list
 2126  pip install pipenv-to-requirements
 2127  pipenv run pipenv_to_requirements
 2128  cat requirements.txt
 2129  vim Pipfile
 2130  pipenv run pipenv_to_requirements
 2131  cat requirements.txt q
 2132  pipenv install ~/git/hsolbrig/funowl
 2133  pipenv shell
 2134  pip install ~/git/hsolbrig/funowl
 2135  pwd
 2136  python setup.py sdist bdist_wheel
 2137  pipenv install ~/git/hsolbrig/funowl
 2138  cd
 2139  cd git/hsolbrig/funowl
 2140  jupyter notebook
 2141  cd
 2142  cd Downloads
 2143  vim Loincit.owl
 2144  pipenv install .
 2145  pip install .
 2146  jupyter notebook
 2147  cd 
 2148  cd git/hsolbrig/funowl/tests/test_owl2_test_suite
 2149  ls
 2150  cd data
 2151  grep AllDifferent *.func
 2152  vim `grep AllDifferent *.func
 2153  vim `grep AllDifferent *.func`
 2154  vim TestCase-3AWebOnt-2DAllDifferent-2D001.func
 2155  grep DifferentInd *
 2156  pwd
 2157  ls
 2158  rm *
 2159  cd
 2160  cd data/terminology/snomedct
 2161  ls
 2162  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 2163  ls
 2164  cd Snapshot
 2165  ls
 2166  vim gblang_skos.owl
 2167  vim foo
 2168  cd
 2169  cd git/hsolbrig
 2170  ls
 2171  mv fhir-parser zzzfhir-parser
 2172  mv zzfhir-parser fhir-parser
 2173  cd fhir-parser
 2174  ls
 2175  git status
 2176  ls models
 2177  rm -rf models
 2178  ls
 2179  python setup.py sdist bdist_wheel
 2180  ls
 2181  ls dist
 2182  git tag v0.2.0
 2183  rm -rf dist
 2184  python setup.py sdist bdist_wheel
 2185  ls dist
 2186  twine upload dist/*
 2187  pip install twine
 2188  twine upload dist/*
 2189  cd
 2190  cd git/hsolbrig/fhir_model_generator
 2191  ls
 2192  rm -rf venv
 2193  pipenv shell
 2194  cd ..
 2195  ls
 2196  cd ../fhir-parser
 2197  ls
 2198  cd ..
 2199  ls
 2200  cd hsolbrig/fhir-parser
 2201  ls
 2202  ls scripts
 2203  ls fhir-parser
 2204  cd
 2205  generate -h
 2206  which generate
 2207  cd..
 2208  cd ..
 2209  cd fhir-parser
 2210  ls
 2211  pipenv shell
 2212  generate -h
 2213  pip list
 2214  cd
 2215  cd venv
 2216  ls
 2217  rm -rf fhir-parser
 2218  cd fhir-parser
 2219  mkdir fhir-parser
 2220  pipenv install fhir-parser
 2221  pip search fhir-parser
 2222  pip search fhir-parser | grep fhir
 2223  pip search fhirparser
 2224  pip install fhirparser
 2225  generate -h
 2226  cat /Library/Frameworks/Python.framework/Versions/3.8/bin/generate
 2227  pip uninstall generate
 2228  pip uninstall fhirparser
 2229  cd
 2230  cd git/hsolbrig/fhir-parser
 2231  ls
 2232  git status
 2233  git add *
 2234  git commit -m "Update link to generate script"
 2235  git tag
 2236  git tag v0.2.1
 2237  rm -rf dist
 2238  python setup.py sdist bdist_wheel
 2239  twine upload dist/*
 2240  cd
 2241  cd venv
 2242  ls
 2243  cd fhir-parser
 2244  ls
 2245  pipenv --rm
 2246  pipenv install fhirparser
 2247  pip search fhirparser
 2248  pipenv lock --clear
 2249  ls
 2250  cd 
 2251  cd git/hsolbrig/fhir-parser
 2252  ls
 2253  pipenv lock
 2254  pip list
 2255  git status
 2256  git diff setup.cfg
 2257  git status
 2258  git add *
 2259  git status
 2260  git commit -m "Removed dash from python directory name"
 2261  git status
 2262  git tag
 2263  git tag v0.2.2
 2264  rm dist/*
 2265  python setup.py sdist bdist_wheel
 2266  cd
 2267  cd venv/fhir-parser
 2268  ls
 2269  pipenv --rm
 2270  pipenv install ~/git/hsolbrig/fhir-parser
 2271  pipenv install -e ~/git/hsolbrig/fhir-parser
 2272  cd ../../git/hsolbrig/fhir-parser
 2273  ls
 2274  rm dist/*
 2275  pipenv install -e ~/git/hsolbrig/fhir-parser
 2276  cd
 2277  pwd
 2278  pipenv --rm
 2279  ls
 2280  ls dist
 2281  python setup.py sdist bdist_wheel
 2282  cd venv
 2283  cd fhir-parser
 2284  ls
 2285  pipenv --rm
 2286  pipenv install ~/git/hsolbrig/fhir-parser
 2287  which python
 2288  cd ..
 2289  ls
 2290  cd fhir-parser
 2291  pipenv
 2292  pipenv install ~/git/hsolbrig/fhir-parser
 2293  which python
 2294  pipenv shell
 2295  pip install ~/git/hsolbrig/fhir-parser
 2296  generate
 2297  vim /Users/solbrig/.local/share/virtualenvs/venv-g19m_vYI/bin/generate
 2298  generate
 2299  ls /Users/solbrig/.local/share/virtualenvs/venv-g19m_vYI/lib
 2300  ls /Users/solbrig/.local/share/virtualenvs/venv-g19m_vYI/lib/python3.8/site-packages
 2301  ls /Users/solbrig/.local/share/virtualenvs/venv-g19m_vYI/lib/python3.8/site-packages/fhir-parser
 2302  vim /Users/solbrig/.local/share/virtualenvs/venv-g19m_vYI/bin/generate
 2303  generate
 2304  python setup.py sdist bdist_wheel
 2305  pwd
 2306  pipenv --rm
 2307  pipenv install ~/git/hsolbrig/fhir-parser
 2308  pipenv lock
 2309  pipenv install ~/git/hsolbrig/fhir-parser
 2310  pipenv --rm
 2311  python setup.py sdist bdist_wheel
 2312  pipenv install ~/git/hsolbrig/fhir-parser
 2313  ls
 2314  rm -rf dist
 2315  python setup.py sdist bdist_wheel
 2316  pipenv install ~/git/hsolbrig/fhir-parser/dist
 2317  pipenv install ~/git/hsolbrig/fhir-parser/dist/fhirparser-0.2.2.tar.gz
 2318  cd ..
 2319  ls
 2320  mv fhir-parser fhirparser
 2321  pwd
 2322  cd fhirparser
 2323  grep -r "fhir-parser" *
 2324  cd ..
 2325  rm -rf fhir-parser
 2326  mkdir fhirparser
 2327  cd fhirparser
 2328  pipenv install fhirparser
 2329  pipenv
 2330  pipenv install --help
 2331  pipenv
 2332  pipenv shell
 2333  pip list
 2334  python
 2335  which python
 2336  python
 2337  which python
 2338  which pipenv
 2339  pip install pipenv
 2340  which pipenv
 2341  which pip
 2342  cd /Library/Frameworks/Python.framework
 2343  cd Versions
 2344  ls
 2345  cd Current
 2346  ls
 2347  ls bin
 2348  env
 2349  cd
 2350  vim .zshrc
 2351  which python
 2352  which pip
 2353  . .zshrc
 2354  ls
 2355  pwd
 2356  ./.zshrc
 2357  . .zshrc
 2358  which pip
 2359  .~/.zshrc
 2360  ~/.zshrc
 2361  . ~/.zshrc
 2362  which pip
 2363  env | grep 3.8
 2364  vim .zshrc
 2365  env | grep 3.8
 2366  grep 3.8 .zsh*
 2367  vim .zshrc
 2368  env | grep path
 2369  env | grep PATH
 2370  env | grep 3.8
 2371  vim .zshrc
 2372  . ~/.zshrc
 2373  ls .z*
 2374  vim .zprofile
 2375  which pip
 2376  pip
 2377  pip -v
 2378  pip -v-v
 2379  pip --v
 2380  pip --version
 2381  cd venv
 2382  ls
 2383  rm -rf fhirparser
 2384  mkdir fhirparser
 2385  cd fhirparser
 2386  pipenv install fhirparser
 2387  pipenv pip
 2388  pipenv shell
 2389  pip list
 2390  pip install fhirparser
 2391  pip install fhirparser --upgrade
 2392  pip list
 2393  generate
 2394  cd ..
 2395  cd ../git/hsolbrig
 2396  ls
 2397  ls fhir-parser
 2398  ls fhirparser
 2399  ls -a fhir-parser
 2400  rm -rf fhir-parser
 2401  mv fhirparser fhir-parser
 2402  cd fhir-parser
 2403  git status
 2404  git diff Pipfile
 2405  cat Pipfile
 2406  vim Pipfile
 2407  pipenv lock
 2408  pip list
 2409  pipenv clean
 2410  pip list
 2411  pipenv run pip list
 2412  git status
 2413  rm dist/*
 2414  git tag
 2415  git tag v2.3
 2416  python setup.py sdist bdist_wheel
 2417  pwd
 2418  ls
 2419  rm -rf fhirparser
 2420  mkdir fparse
 2421  cd fparse
 2422  ls
 2423  vim setup.cfg
 2424  pipenv install ~/git/hsolbrig/fhir-parser
 2425  ls dist
 2426  grep fhir-parser *
 2427  pipenv shell
 2428  pwd
 2429  ls -a
 2430  cd ..
 2431  ls
 2432  ls -a
 2433  rm Pipfile
 2434  cd fparse
 2435  ls
 2436  pipenv shell
 2437  pip list
 2438  pip install fhirparser
 2439  pip list
 2440  pip install -e ~/git/hsolbrig/fhir-parser --upgrade
 2441  pip list
 2442  generate
 2443  ls
 2444  cd fhirparser
 2445  ls
 2446  vim generate.py
 2447  vim /Users/solbrig/git/hsolbrig/fhir-parser/fhirparser/generate.py
 2448  generate
 2449  cat Pipfile
 2450  cd ..
 2451  cat Pipfile
 2452  pipenv install logger
 2453  pip install logger
 2454  generate
 2455  cd fhirparser
 2456  vim fhirspec.py
 2457  generate
 2458  vim ../tests/fhirunittest.py
 2459  generate
 2460  vim generate
 2461  vim generate.py
 2462  vim /Users/solbrig/.local/share/virtualenvs/fparse-_QudpGGM/bin/generate"
 2463  vim /Users/solbrig/.local/share/virtualenvs/fparse-_QudpGGM/bin/generate
 2464  generate
 2465  vim /Users/solbrig/.local/share/virtualenvs/fparse-_QudpGGM/bin/generate
 2466  generate
 2467  vim /Users/solbrig/.local/share/virtualenvs/fparse-_QudpGGM/bin/generate
 2468  generate
 2469  vim setup.cfg
 2470  cd ..
 2471  vim setup.cfg
 2472  fhirparser -h
 2473  generate -h
 2474  cd ~/git/hsolbrig/fhir_model_generator
 2475  ls
 2476  generate fhir-parser-resources/settings.py
 2477  cd fhirparser
 2478  generate fhir-parser-resources/settings.py
 2479  pwd
 2480  cd ..
 2481  git tag
 2482  git tag v0.2.4
 2483  rm dist/*
 2484  python setup.py sdist bdist_wheel
 2485  pip uninstall fhirparser
 2486  pipenv list
 2487  pipenv install
 2488  cat Pipfile
 2489  pipenv install ~/git/hsolbrig/fhir-parser
 2490  pipenv shell
 2491  generate -?
 2492  generate
 2493  git tag
 2494  git tag v0.2.5
 2495  pipenv install ~/git/hsolbrig/fhir-parser
 2496  python setup.py sdist bdist_wheel
 2497  git tag
 2498  git tag --help
 2499  git tag
 2500  git tag -d v2.3
 2501  git tag
 2502  python setup.py sdist bdist_wheel
 2503  pipenv uninstall fhirparser
 2504  pipenv install -e ~/git/hsolbrig/fhir-parser
 2505  pipenv shell
 2506  generate
 2507  cd
 2508  cd git/hsolbrig/fhir_model_generator
 2509  ls
 2510  diff settings.py fhir-parser-resources/settings.py
 2511  rm settings.py
 2512  generate fhir-parser-resources/settings.py
 2513  cd fhir-parser-resources
 2514  ls
 2515  vim settings.py
 2516  generate fhir-parser-resources/settings.py --help
 2517  generate fhir-parser-resources/settings.py -c
 2518  cd ..
 2519  generate fhir-parser-resources/settings.py -c
 2520  ls models
 2521  ls
 2522  find . -name model
 2523  find . -name *.py
 2524  find . -name "*.py"
 2525  cd fhir-parser-resources
 2526  ls
 2527  vim settings.py
 2528  cd ..
 2529  generate fhir-parser-resources/settings.py -c > out
 2530  vim out
 2531  ls
 2532  mkdir model
 2533  generate fhir-parser-resources/settings.py -c > out
 2534  vim out
 2535  ls model
 2536  vim out
 2537  cd ..
 2538  ls
 2539  ls mdoel
 2540  ls model
 2541  rm -rf model
 2542  cd fhir_model_generator
 2543  ls
 2544  vim fhir-parser-resources
 2545  vim fhir-parser-resources/settings.py
 2546  ls
 2547  ls tests
 2548  ls tests/model
 2549  vim out
 2550  ls
 2551  cd ../fhir_model_generator
 2552  ls
 2553  ls model
 2554  ls tests
 2555  ls ..
 2556  ls ../tests
 2557  ls ../tests/model
 2558  rm -rf ../tests
 2559  ls
 2560  cat fhir-parser-resources/settings.py
 2561  cd ..
 2562  cd fhir_model_generator
 2563  ls
 2564  generate fhir-parser-resources/settings.py -c > out
 2565  vim out
 2566  ls
 2567  ls model
 2568  ls ../model
 2569  rm -rf ../model
 2570  cd ../fhir-parser
 2571  python setup.py sdist bdist_wheel
 2572  pipenv install -e ~/git/hsolbrig/fhir-parser
 2573  pipenv shell
 2574  generate fhir-parser-resources/settings.py -c > out
 2575  cd ~/git/hsolbrig/fhir_model_generator
 2576  generate fhir-parser-resources/settings.py -c > out
 2577  vim out
 2578  gim fhirparser/generate.py
 2579  vim fhirparser/generate.py
 2580  generate fhir-parser-resources/settings.py -c > out
 2581  vim out
 2582  pwd
 2583  cd ../fhir_model_generator
 2584  ls
 2585  cd fhir-parser-resources
 2586  vim settings.py
 2587  generate fhir-parser-resources/settings.py -c 
 2588  ls
 2589  cd ..
 2590  ls
 2591  ls models
 2592  ls model
 2593  ls tests/model
 2594  ls tests
 2595  ls
 2596  less fhir-parser-resources/settings.py
 2597  ls tests
 2598  generate fhir-parser-resources/settings.py -c > out
 2599  vim out
 2600  ls ../tests
 2601  rm -rf ../tests
 2602  vim fhir-parser-resources/settings.py
 2603  generate fhir-parser-resources/settings.py -c 
 2604  ls
 2605  ls model
 2606  ls tests/model
 2607  ls cache
 2608  ls
 2609  ls downloads
 2610  cd ../fhir-parser
 2611  ls
 2612  git status
 2613  git tag
 2614  git add fhirparser/fhirunittest.py
 2615  git commit -am "Make file name settings file relative"
 2616  git status
 2617  git push
 2618  git tag
 2619  git tag v0.3.0
 2620  python setup.py sdist bdist_wheel
 2621  ls dist
 2622  cd dist
 2623  rm fhirparser-0.2.5*
 2624  rm fhirparser-2.3.0*
 2625  ls
 2626  cd ..
 2627  twine upload dist/*
 2628  pip install twine
 2629  pip list
 2630  pip uninstall fhirparser
 2631  vim Pipfile
 2632  pip list
 2633  twine upload dist/*
 2634  ls
 2635  pwd
 2636  pipenv --rm
 2637  ls
 2638  cat Pipfile
 2639  rm Pipfile*
 2640  pipenv install fhirparser
 2641  pipenv shell
 2642  generate -h
 2643  vim pipenv
 2644  vim Pipfile
 2645  pipenv lock
 2646  vim Pipfile
 2647  which generate
 2648  pip list
 2649  git status
 2650  git diff Pipfile
 2651  vim Pipfile
 2652  git diff Pipfile
 2653  git status
 2654  pipenv lock
 2655  git status
 2656  pip install logger
 2657  generate -h
 2658  ls
 2659  rm dist/*
 2660  python setup.py sdist bdist_wheel
 2661  ls
 2662  cd tests
 2663  ls
 2664  ls model
 2665  rm -rf model
 2666  ls
 2667  cd ..
 2668  vim .gitignore
 2669  git status 
 2670  git commit -am "Remove generator output"
 2671  find . -name vision*.py
 2672  find . -name *vision*.py
 2673  git status
 2674  git tag
 2675  git tag v0.3.1
 2676  ls dist
 2677  rm dist/*
 2678  python setup.py sdist bdist_wheel
 2679  twine upload dist/fhirparser-0.3.1-py3-none-any.whl dist/fhirparser-0.3.1.tar.gz 
 2680  ls
 2681  pipenv --rm
 2682  rm out
 2683  rm *
 2684  pipenv install fhirparser
 2685  pipenv shell
 2686  pip list
 2687  ls
 2688  rm -rf build
 2689  generate -h
 2690  vim /Users/solbrig/.local/share/virtualenvs/fparse-_QudpGGM/lib/python3.7/site-packages/fhirparser/fhirloader.py
 2691  generate -h
 2692  python setup.py sdist bdist_wheel
 2693  pip install ~/git/hsolbrig/fhir-parser
 2694  generate -h
 2695  cd ~/git/hsolbrig/fhir_model_generator
 2696  generate fhir-parser-resources -c
 2697  generate fhir-parser-resources -c > out
 2698  generate fhir-parser-resources -c 2> out
 2699  vim out
 2700  ls model
 2701  pip list fhirparser
 2702  pip search fhirparser
 2703  git
 2704  git tag
 2705  git tag v0.3.2
 2706  rm dist/*
 2707  python setup.py sdist bdist_wheel
 2708  ls dist
 2709  twine upload dist/*
 2710  git status
 2711  git commit -am "Get logger path right"
 2712  git push
 2713  ls
 2714  vim Pipfile
 2715  cat generate_models.sh
 2716  vim generate_models.sh
 2717  pushd
 2718  popd
 2719  ls
 2720  chmod +x generate_models.sh 
 2721  ./generate_models.sh -c
 2722  pwd
 2723  cd ~/git/hsolbrig/fhir_model_generator
 2724  ls
 2725  vim generate_models.sh
 2726  ./generate_models.sh
 2727  vim generate_models.sh
 2728  cd fhir-parser-resources
 2729  ls
 2730  cd ..
 2731  ls
 2732  vim generate_models.sh
 2733  ./generate_models.sh -c
 2734  vim generate_models.sh
 2735  ls 
 2736  ls fhir-parser-resources
 2737  vim generate_models.sh
 2738  pipenv run generate -h
 2739  cat Pipfile
 2740  pipenv --rm
 2741  pipenv install
 2742  pipenv run pip list
 2743  pipenv run generate -h
 2744  cat generate_models.sh
 2745  vim generate_models.sh
 2746  ./generate_models.sh
 2747  vim fhir-parser-resources/settings.py
 2748  cd ..
 2749  ls
 2750  cd ../stephanie-howson
 2751  ls
 2752  cd ../zzhou41
 2753  ls
 2754  cd client-py
 2755  ls
 2756  cd fhir-parser-resources
 2757  ls
 2758  vim settings.py
 2759  ls
 2760  pipenv run pip install -e ~/git/hsolbrig/fhir-parser
 2761  ./generate_models.sh . -c
 2762  ./generate_models.sh -c
 2763  ls models
 2764  ls
 2765  ls model
 2766  vim logs
 2767  rm logs
 2768  ./generate_models.sh -c
 2769  vim logs
 2770  ls
 2771  rm out
 2772  ./generate_models.sh -c 2> out
 2773  vim out
 2774  find . -name fhirabstract*
 2775  find . -iname fhirabstract*
 2776  find . -iname "fhirabstract*"
 2777  ./generate_models.sh -h
 2778  ./generate_models.sh -c 2> out
 2779  vim out
 2780  ./generate_models.sh -c 2> out
 2781  vim out
 2782  ./generate_models.sh -c 2> out
 2783  grep COPY out
 2784  ./generate_models.sh -c 2> out
 2785  cat Pipfile
 2786  vim out
 2787  cat generate_models.sh
 2788  vim generate_models.sh
 2789  ./generate_models.sh -c 
 2790  ls model
 2791  ./generate_models.sh -c 
 2792  ls model
 2793  cd
 2794  cd git/HL7/fhir
 2795  ls
 2796  cd publish
 2797  grep bool *.json
 2798  grep -H bool *.json | grep -v \<td | more
 2799  grep -H '"boolean"' *.json | grep -v \<td | more
 2800  grep -H ': "boolean"' *.json | grep -v \<td | more
 2801  vim bp.profile.json
 2802  grep -H ': "boolean"' *.json | grep -v \<td | grep obs
 2803  grep '"active"' *.json
 2804  grep '"active": ' *.json
 2805  grep extension *.json | grep patient | more
 2806  grep extension *.json | grep patient | grep -v '"text"' | more
 2807  grep extension *.json | grep patient | grep -v '"text"' | grep -v '"div"' | more
 2808  grep extension *.json | grep patient | grep -v '"text"' | grep -v '"div"' | grep -v '"comment"' | more
 2809  vim extension-patient-cadavericdonor.json
 2810  grep cadavericdoner *
 2811  grep cadavericdoner *.json
 2812  grep cadave  *.json
 2813  grep cadave  *.json | more
 2814  grep '"http://hl7.org/fhir/StructureDefinition/patient-cadavericDonor"' *.json
 2815  grep -i extension patient*examp*.json
 2816  vim patient_example-b.json
 2817  vim patient-example-b.json
 2818  grep valueInteger *.xml
 2819  grep valueInteger *.xml | more
 2820  grep '"_' *.json | more
 2821  grep '"_' *.json | grep -v '"comment"' | more
 2822  vim bundle-response-medsallergies.json
 2823  grep extension *.ttl
 2824  grep fhir:extension *.ttl
 2825  grep fhir:Extension *.ttl
 2826  vim patient-example-newborn.ttl
 2827  cd
 2828  cd Documents/Presentations
 2829  ls
 2830  cd 2019
 2831  mkdir FHIRDF
 2832  cd FHIRRDF
 2833  cd FHIRDF
 2834  ls
 2835  vim ex.ttl
 2836  python
 2837  pip list
 2838  pip install rdflib
 2839  python
 2840  vim ex.ttl
 2841  cd
 2842  cd venv
 2843  ls
 2844  cd fparse
 2845  cd ~/git/hsolbrig/fhir-parser
 2846  ls
 2847  cat Pipfile
 2848  pipenv lock
 2849  python setup.py sdist bdist_wheel
 2850  pipenv shell
 2851  pip list
 2852  pip install -e ~/git/hsolbrig/fhir-parser
 2853  pip list
 2854  cd
 2855  cd git/hsolbrig/fhir_model_generator
 2856  ls
 2857  ./generate_models.sh -c
 2858  python setup.py sdist bdist_wheel
 2859  pip install ../fhir-parser 
 2860  pip install -e ../fhir-parser 
 2861  ./generate_models.sh -c
 2862  less model/account.py
 2863  ls
 2864  vim fhir-parser-resources/settings.py
 2865  less model/account.py
 2866  ./generate_models.sh -c
 2867  less model/account.py
 2868  ./generate_models.sh -c
 2869  python setup.py sdist bdist_wheel
 2870  ./generate_models.sh -c
 2871  less model/account.py
 2872  ./generate_models.sh -c --help
 2873  ./generate_models.sh -c --nosort
 2874  less model/account.py
 2875  ./generate_models.sh -c --nosort
 2876  ./generate_models.sh -c --nosort > out
 2877  ./generate_models.sh -c --nosort 2> out
 2878  vim out
 2879  ./generate_models.sh -c --nosort 2> out
 2880  pipenv run pip list
 2881  pipenv run pip uninstall fhirparser
 2882  ls
 2883  vim Pipfile
 2884  vim generate_models.sh
 2885  ./generate_models.sh -c --nosort 2> out
 2886  vim out
 2887  less model/account.py
 2888  rm model/account.py
 2889  ./generate_models.sh -c --nosort 2> out
 2890  vim fhir-parser-resources
 2891  ./generate_models.sh -c --nosort 2> out
 2892  cat out
 2893  ./generate_models.sh -c --nosort 
 2894  less model/account.py
 2895  ./generate_models.sh -c 
 2896  ./generate_models.sh -c
 2897  less model/account.py
 2898  pip list
 2899  git tag
 2900  git tag v0.3.4
 2901  git status
 2902  git diff Pipfile
 2903  git commit -am "Add nosort option and sort_resources to settings"
 2904  git push
 2905  vim fhir-parser-resources
 2906  python setup.py sdist bdist_wheel
 2907  git push
 2908  python setup.py sdist bdist_wheel
 2909  git status
 2910  rm dist/*
 2911  git tag v0.3.6
 2912  python setup.py sdist bdist_wheel
 2913  twine upload dist/*
 2914  git status
 2915  git commit -am "Publish version 0.3.6"
 2916  git push
 2917  cd ..
 2918  ls
 2919  cd client-py
 2920  ls
 2921  find . -name *test*
 2922  cat test_models.sh
 2923  cp test_models.sh ../fhir_model_generator
 2924  find . -name servver-tests.py
 2925  find . -name server_tests.py
 2926  cp fhirclient/server_tests.py ../fhir_model_generator/tests
 2927  find . -name server.py
 2928  cd fhirclient
 2929  vim server.py
 2930  cp server.py ../../fhir_model_generator/tests
 2931  ls
 2932  pwd
 2933  cd ../../fhir_model_generator
 2934  ls
 2935  cd tests
 2936  ls
 2937  cd ..
 2938  cat test_models.sh
 2939  vim test_models.sh
 2940  ./test_models.sh
 2941  ls
 2942  vim test_models.sh
 2943  ./test_models.sh
 2944  vim Pipenv
 2945  pwd
 2946  ls
 2947  vim Pipfile
 2948  ./test_models.sh
 2949  pwd
 2950  cd ../../git/hsolbrig/fhir_model_generator
 2951  ls
 2952  ./test_models.sh
 2953  ./test_models.sh 2> out
 2954  vim out
 2955  pipenv install --help
 2956  ./test_models.sh 2> out
 2957  vim out
 2958  python --help
 2959  env | grep PYTHON
 2960  export PYTHONPATH=.
 2961  python
 2962  ls model/fhirele*
 2963  ls model
 2964  find . -name fhirelement*
 2965  python
 2966  cd ../client-py
 2967  find . -name fhirelementfactory
 2968  find . -name fhirelementfactory*
 2969  cd ..
 2970  find . -name "fhirelementfactory*"
 2971  ls models
 2972  ls model
 2973  ls -l models
 2974  ls -l model
 2975  ls -l model | wc -l
 2976  ls -l models | wc -l
 2977  find . -name "fhirelementfactory*"
 2978  pwd
 2979  cd ../stephanie-howson
 2980  find . -name "fhirelementfactory*"
 2981  cd ../zzhou41
 2982  find . -name "fhirelementfactory*"
 2983  cd client-py
 2984  grep -r fhirelementfactory *
 2985  ls
 2986  cd ../../
 2987  cd hsolbrig/fhir_model_generator
 2988  ls
 2989  vim out
 2990  ./generate_models.sh -c 2> out
 2991  vim out
 2992  less out
 2993  pipenv shell
 2994  find /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/ -name generator.py
 2995  find /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/ -name generator*
 2996  pip list
 2997  ./generate_models.sh -c
 2998  ./generate_models.sh -c 2> out
 2999  vim out
 3000  pipenv run pip list
 3001  ./generate_models.sh -c 2> out
 3002  find . -name fhirelement*
 3003  ls
 3004  ls ..
 3005  cd ..
 3006  find . -name fhirelement*
 3007  cd fhir_model_generator
 3008  ls
 3009  cat generate_models.sh
 3010  ls
 3011  ls model
 3012  ls model/fhir*
 3013  vim model/account.py
 3014  cd model
 3015  python
 3016  cd ..
 3017  python
 3018  cd ../..
 3019  find . -name fhirelementfactory.py
 3020  find . -name *fhirelementfactory*.py
 3021  find . -name "*fhirelementfactory*"
 3022  ls hsolbrig/model
 3023  ls hsolbrig/model/*
 3024  ls -l hsolbrig/model/*
 3025  ls -l hsolbrig/model/fhir*
 3026  cp hsolbrig/model/fhirelementfactory.py hsolbrig/fhir_model_generator/model
 3027  pwd
 3028  cd hsolbrig
 3029  cd fhir_model_generator
 3030  ls
 3031  ls tests
 3032  rm tests/model/*
 3033  rm ../model/*
 3034  rm -rf ../model
 3035  rm -rf ../models
 3036  ls
 3037  rm -rf model
 3038  ./generate_models.sh -c
 3039  ls model
 3040  vim
 3041  ls
 3042  cd ../fhir-parser
 3043  ls
 3044  rm -rf build
 3045  cd ../fhir_model_generator
 3046  ls
 3047  ./generate_models.sh
 3048  vim generate_models.sh
 3049  ./generate_models.sh
 3050  ls model
 3051  ls -l model | wc -l
 3052  ls -l tests/model | wc -l
 3053  cd model
 3054  ls
 3055  python
 3056  cd ..
 3057  python
 3058  ls
 3059  ./test_models.sh
 3060  ./test_models.sh > out
 3061  vim out
 3062  ./test_models.sh 2> out
 3063  vim out
 3064  vim test_models.sh
 3065  ls model
 3066  ls tests
 3067  ls tests/model
 3068  cat test_models.sh
 3069  pipenv run python -m unittest tests/model/account_tests.py
 3070  vim fhir-parser-resources/template-unittest.j2
 3071  ./generate_models.sh -c
 3072  pipenv run python -m unittest tests/model/account_tests.py
 3073  ./test_models.sh 2> out
 3074  vim out
 3075  vim tests/model/account_tests.py
 3076  ./test_models.sh 2> out
 3077  vim out
 3078  ./generate_models.sh -c
 3079  ./test_models.sh 2> out
 3080  vim out
 3081  ls
 3082  cd ..
 3083  cd client-py
 3084  ls
 3085  find . -name auth
 3086  find . -name auth*
 3087  pwd
 3088  cd ../client-py
 3089  ls
 3090  find . -name auth*
 3091  less requirements.txt
 3092  grep -r FHIRAuth *
 3093  cd fhirclient
 3094  ls
 3095  cd ..
 3096  alias find='noglob find'
 3097  find . -name auth*
 3098  vim ~/.zshrc
 3099  cp fhirclient/auth.py ../fhir_model_generator/tests/
 3100  cd ../fhir_model_generator
 3101  ls
 3102  ./test_models.sh
 3103  vim test_models.sh
 3104  vim Pipfile
 3105  vim test_models.sh
 3106  ./test_models.sh
 3107  ls
 3108  ls tests
 3109  cp ~/git/hsolbrig/client-py/fhirclient/fhirreference_tests.py .
 3110  vim fhirreference_tests.py
 3111  ./test_models.sh
 3112  cd tests
 3113  ls
 3114  cd ..
 3115  find . -name fhirref*
 3116  mv fhirreference_tests.py tests
 3117  ./test_models.sh
 3118  vim tests/fhirreference_tests.py
 3119  ./test_models.sh
 3120  vim tests/fhirreference_tests.py
 3121  ./test_models.sh
 3122  vim tests/fhirreference_tests.py
 3123  vim server.py
 3124  vim tests/server.py
 3125  vim tests/fhirreference_tests.py
 3126  ./test_models.sh
 3127  vim tests/fhirreference_tests.py
 3128  ./test_models.sh
 3129  vim tests/server_tests.py
 3130  ./test_models.sh
 3131  ls
 3132  cd ../client-py
 3133  find . -name test_relative*
 3134  cd fhirclient
 3135  ls
 3136  ls *.json
 3137  cp *.json ../../fhir_model_generator/tests
 3138  cd ../../fhir_model_generator
 3139  ./test_models.sh
 3140  vim tests/fhirreference_tests.py
 3141  ./test_models.sh
 3142  vim test_models.sh
 3143  ./test_models.sh
 3144  cd ../fhir_model_generator
 3145  ls
 3146  pipenv run pipenv_to_requirements
 3147  cd ../fhir-parser
 3148  ls
 3149  pipenv lock
 3150  cat Pipenv
 3151  cat Pipfile
 3152  pipenv --rm
 3153  pipenv install
 3154  ls
 3155  git tag
 3156  ls dist
 3157  python setup.py sdist bdist_wheel
 3158  ls
 3159  pipenv install
 3160  cat requirements.txt
 3161  pipenv run pipenv_to_requirements
 3162  ls
 3163  pip list
 3164  ls dist
 3165  rm dist/*
 3166  pipenv --rm
 3167  pipenv install
 3168  ls /var/folders/5f/82515x2x1cl_5c4zqvyd15nm0000gp/T/tmpf0kpj1hsbuild/logging/
 3169  ls /var/folders/5f/82515x2x1cl_5c4zqvyd15nm0000gp/T/tmpf0kpj1hsbuild/
 3170  pip install pipenv --upgrade
 3171  pipenv list
 3172  pipenv shell
 3173  pip list
 3174  cat requirements.txt
 3175  pipenv install colorlog
 3176  pipenv instal rdflib
 3177  pipenv install rdflib
 3178  env
 3179  pip list
 3180  cd
 3181  cd git/NCATS-Tangerine
 3182  ls
 3183  cd kgx
 3184  git pull
 3185  git checkout master
 3186  git pull
 3187  git status
 3188  pipenv install
 3189  make tests
 3190  pipenv shell
 3191  make tests
 3192  pip install pytest
 3193  ls
 3194  pipenv shell
 3195  make tests
 3196  pip install stringcase
 3197  make tests
 3198  pip install bmt
 3199  vim requirements.txt 
 3200  pipenv install --help
 3201  pipenv install --skip-lock
 3202  pipenv run pip list
 3203  ls
 3204  ls ../fhir-parser
 3205  cat ../fhir-parser/Pipfile
 3206  ls
 3207  cat Pipfile
 3208  pipenv run pipfile_to_requirements --help
 3209  pipenv run pipfile-to-requirements --help
 3210  pip list
 3211  pipenv run pipenv-to-requirements --help
 3212  pipenv run pipenv_to_requirements --help
 3213  pipenv run pipenv_to_requirements
 3214  vim requirements-dev.txt
 3215  pip list
 3216  vim requirements-dev.txt
 3217  pipenv install -d
 3218  vim Pipfile
 3219  pipenv install --help
 3220  cat requirements-dev.txt
 3221  cd
 3222  cd git/NCATS-Tangerine/kgs
 3223  cd git/NCATS-Tangerine/kgx
 3224  vim Pipfile
 3225  pipenv install -d
 3226  pipenv shell
 3227  make tests
 3228  pip install validators
 3229  make tests
 3230  vim Pipfile
 3231  ls
 3232  pipenv lock
 3233  pipenv run pip list
 3234  pipenv --rm
 3235  pipenv lock
 3236  pipenv install
 3237  pipenv shell
 3238  make tests
 3239  exit
 3240  pipenv install -e
 3241  pipenv install -d
 3242  pipenv shell
 3243  make tests
 3244  ls
 3245  git status
 3246  vim requirements.txt
 3247  vim Pipfile
 3248  pip list
 3249  vim requirements.txt
 3250  cd
 3251  cd data/terminology/snomedct
 3252  ls
 3253  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 3254  ls
 3255  cd Snapshot
 3256  ls
 3257  cd Terminology
 3258  ls
 3259  less snomed.owl
 3260  pwd
 3261  cd
 3262  cd git/hsolbrig/funowl
 3263  ls
 3264  pipenv shell
 3265  pip list
 3266  ls
 3267  cd tests/test_ontologies
 3268  ls
 3269  time python test_snomed.py
 3270  cd ..
 3271  time python tests/test_ontologies/test_snomed.py
 3272  pwd
 3273  python tests/test_ontologies/test_snomed.py
 3274  ls funowl
 3275  env | grep PYTHON
 3276  cd
 3277  cd venv
 3278  ls
 3279  mkdir funowl
 3280  cd funowl
 3281  ls -l
 3282  pwd
 3283  cd
 3284  cd venv
 3285  ls
 3286  mkdir funowl
 3287  cd funowl
 3288  pipenv install ~/git/hsolbrig/funowl
 3289  pipenv shell
 3290  cd ~/git/hsolbrig/funowl
 3291  ls
 3292  time ls
 3293  time python tests/test_ontologies/test_snomed.py
 3294  git status
 3295  git pull
 3296  git diff funowl/class_expressions.py
 3297  vim funowl/class_expressions.py
 3298  git pull
 3299  git diff funowl/ontology_document.py
 3300  vim funowl/ontology_document.py
 3301  git pull
 3302  git diff funowl/ontology_document.py
 3303  cp funowl/ontology_document.py zz.py
 3304  git checkout -- funowl/ontology_document.py
 3305  diff zz.py funowl/ontology_document.py
 3306  diff zz.py funowl/ontology_document.py | more
 3307  cp zz.py funowl/ontology_document.py
 3308  git checkout -- funowl/ontology_document.py
 3309  git pull
 3310  cp zz.py funowl/ontology_document.py
 3311  cd
 3312  cd data/terminology/snomedct
 3313  ls
 3314  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 3315  ls
 3316  cd Snapshot/Terminology
 3317  vim snomed.owl
 3318  ls -l
 3319  ks 0k
 3320  ls -l
 3321  cp snomed.owl snomed_ms.owl
 3322  vim snomed_ms.owl
 3323  vim snomed.owl
 3324  cd
 3325  cd git/hsolbrig/funowl/
 3326  ls
 3327  cd tests/data
 3328  ls
 3329  cd ../test_owl2_test_suite
 3330  ls
 3331  cd data
 3332  ls
 3333  ls Rdfbased-2Dsem-2Deqdis-2Ddisclass-2Dirrflxv.ttl
 3334  ls Rdfbased-2Dsem-2Deqdis-2Ddisclass-2Dirrflxv.*
 3335  ls Rdfbased-2Dsem-2Deqdis-2Ddisclass-2Dirrflxv*
 3336  less Rdfbased-2Dsem-2Deqdis-2Ddisclass-2Dirrflxv.rdf
 3337  python
 3338  less Rdfbased-2Dsem-2Deqdis-2Ddisclass-2Dirrflxv.rdf
 3339  vim Rdfbased-2Dsem-2Deqdis-2Ddisclass-2Dirrflxv.rdf
 3340  cd
 3341  cd git/hsolbrig/funowl
 3342  ls
 3343  git status
 3344  vim .gitignore
 3345  git status
 3346  vim .gitignore
 3347  git status
 3348  git add .gitignore
 3349  git status
 3350  rm tests/.DS_Store
 3351  git status
 3352  ls docs
 3353  git add docs
 3354  git status
 3355  vim .gitignore
 3356  cd docs
 3357  vim filler
 3358  git status
 3359  cd ../../biolinkml
 3360  cd ../
 3361  pwd
 3362  cd ..
 3363  cd ../biolink/biolinkml
 3364  ls
 3365  git status
 3366  vim .gitignore
 3367  cd ../hsolbrig/finowl
 3368  cd ../hsolbrig/
 3369  cd ..
 3370  cd ../hsolbrig/funowl
 3371  ls
 3372  vim .gitignore
 3373  git status
 3374  vim .gitignore
 3375  git status
 3376  cd docs
 3377  ls
 3378  rm *
 3379  cd ..
 3380  git status
 3381  cd docs
 3382  vim filler
 3383  cd ..
 3384  git status
 3385  git add docs
 3386  git commit -m "Creating documentation directory"
 3387  git push
 3388  pwd
 3389  git pull
 3390  ls ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot
 3391  ls ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot/Terminology
 3392  ls -l ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot/Terminology
 3393  ls -lh ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot/Terminology
 3394  ls -lh ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot
 3395  cd
 3396  cd venv
 3397  ls
 3398  cd funowl
 3399  pipenv shell
 3400  pipenv list
 3401  pip list
 3402  ls
 3403  cd ..
 3404  ls
 3405  cd jupyter
 3406  pipenv shell
 3407  pip list
 3408  pipenv install -e ~/git/hsolbrig/funowl
 3409  cd ~/git/hsolbrig/funowl
 3410  jupyter notebook
 3411  cd
 3412  cd git/HL7/fhir
 3413  cd publish
 3414  ls allergyintolerance*
 3415  cd ~/Downloads
 3416  jupyter notebook
 3417  cd ~/git/hsolbrig/funowl
 3418  ls
 3419  jupyter notebook
 3420  cd
 3421  cd git/HL7/fhir/publish
 3422  ls account.profile.json
 3423  more account.profile.json
 3424  vim account.profile.json
 3425  ls patient*example*
 3426  cat patient-examples-general.json
 3427  cat patient.profile.json | more
 3428  cd 
 3429  cd git/shexSpec/shexTest
 3430  ls
 3431  cd schemas
 3432  ls
 3433  pwd
 3434  cat open2dotclose.shex
 3435  cat open2dotclose.json
 3436  cd ~/git/HL7/fhir/publish
 3437  less account.profile.json
 3438  cd
 3439  cd Desktop
 3440  vim SingletonTest.owl
 3441  vim ST2.owl
 3442  cd ~/git/HL7/fhir
 3443  ./publish.sh
 3444  cd
 3445  cd Documents
 3446  find . -name FHIRand*
 3447  cd ..
 3448  find . -name FHIRand*
 3449  cd Desktop
 3450  find . -name FHIRand*
 3451  cd ..
 3452  find . -name FHIRandRDF2*
 3453  cd 
 3454  cd git/HL7/fhir
 3455  vim `find . -name RdfGenerator.java`
 3456  vim `find . -name RDFValidator.java`
 3457  pwd
 3458  cd publish
 3459  ls *.zip
 3460  cd
 3461  cd venv
 3462  ls
 3463  cd fparse
 3464  pipenv shell
 3465  generate -?
 3466  generate --help
 3467  cd
 3468  cd git/hsolbrig/fhir_model_generator
 3469  ls
 3470  cd ~/git/hsolbrig/fhir_model_generator
 3471  ./generate_models.sh
 3472  ls
 3473  ./test_models.sh
 3474  ./generate_models.sh
 3475  ls *.log
 3476  find . -name *.log
 3477  find . -name *log
 3478  ./generate_models.sh 2> log
 3479  vim log
 3480  less log 
 3481  ./test_models.sh
 3482  ./test_models.sh 2> errs
 3483  vim errs
 3484  ./generate_models.sh 2> log
 3485  ./test_models.sh 2> errs
 3486  vim errs
 3487  ./test_models.sh 2> errs
 3488  less errs
 3489  ./generate_models.sh 2> log
 3490  ./test_models.sh 2> errs
 3491  less errs
 3492  ./generate_models.sh 2> log
 3493  ./test_models.sh 2> errs
 3494  less errs
 3495  ./generate_models.sh 2> log
 3496  ./test_models.sh 2> errs
 3497  less errs
 3498  cd ..
 3499  cd fhir_model_generator
 3500  find . -name metadata
 3501  cd tests
 3502  ls
 3503  vim metadata
 3504  cd ..
 3505  ./test_models.sh 2> errs
 3506  less errs
 3507  grep -r metadata *
 3508  grep -r metadata * | grep \.py
 3509  grep -r metadata * | grep \\.py
 3510  ./test_models.sh 2> errs
 3511  vim errs
 3512  cd
 3513  cd git/hsolbrig/fhir_model_generator
 3514  ./test_models.sh
 3515  git fetch
 3516  git checkout R4
 3517  ls
 3518  ls model
 3519  rm -rf model
 3520  vim fhir-parser-resources/settings.py
 3521  ls
 3522  rm log out
 3523  rm errs
 3524  ls
 3525  ./generate_models.sh -f
 3526  git status
 3527  vim .gitignore
 3528  git add .gitignore
 3529  git status
 3530  git add model tests/model
 3531  git status
 3532  git add out
 3533  git status
 3534  git commit -m "R4 Build for evaluation"
 3535  git push
 3536  git fetch
 3537  git checkout R4
 3538  git checkout R5
 3539  vim fhir-parser-resources/settings.py
 3540  ./generate_models.sh -f
 3541  ./generate_models.sh  2> generate.log
 3542  less generate.log
 3543  ls
 3544  ./test_models.sh
 3545  ./test_models.sh 2> test.log
 3546  vim test.log
 3547  vim model/account.py
 3548  ls
 3549  git checkout master
 3550  git status
 3551  git pull
 3552  cat .gitignore
 3553  vim .gitignore
 3554  ls
 3555  vim settings.py
 3556  vim fhir-parser-resources/settings.py
 3557  ./generate_models.sh --help
 3558  pwd
 3559  vim generate.log
 3560  ls
 3561  cd ..
 3562  find . -name fhirelementfactory.py
 3563  ls model
 3564  rm -rf mode
 3565  cd fhir_model_generator
 3566  ls
 3567  vim fhir-parser-resources/settings.py
 3568  pipenv shell
 3569  which generate
 3570  ls /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/lib/python3.7/site-packages/fhirparser
 3571  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/lib/python3.7/site-packages/fhirparser/fhirrenderer.py
 3572  pwd
 3573  ./generate_models.sh | more
 3574  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/lib/python3.7/site-packages/fhirparser/fhirrenderer.py
 3575  ./generate_models.sh | more
 3576  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/lib/python3.7/site-packages/fhirparser/fhirrenderer.py
 3577  ./generate_models.sh | grep element
 3578  cp ../fhir-parser/fhirparser/fhirrenderer.py /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/lib/python3.7/site-packages/fhirparser/fhirrenderer.py
 3579  ./generate_models.sh 
 3580  ./test_models.sh
 3581  cd ../fhir-parser
 3582  ls
 3583  cd ../fhir-parser
 3584  ls
 3585  pipenv --rm
 3586  pipenv lock
 3587  rm -rf /Users/solbrig/.local/share/virtualenvs/fhir-parser-PvZGPR63
 3588  pipenv lock
 3589  pipenv run pip list
 3590  cat Pipfile
 3591  vim Pipfile
 3592  pipenv install requests
 3593  ls
 3594  pipenv shell
 3595  pip install requests
 3596  pip list
 3597  pip install jinja2
 3598  pip list
 3599  pip install colorlog
 3600  pip list
 3601  pipenv --rm
 3602  pipenv run pip list
 3603  pipenv install rdflib
 3604  ls /var/folders/5f/82515x2x1cl_5c4zqvyd15nm0000gp/T/tmpcu4ef6h7build/logging/
 3605  ls /var/folders/5f/82515x2x1cl_5c4zqvyd15nm0000gp/T/tmpcu4ef6h7build/
 3606  pip list
 3607  pip install --upgrade
 3608  pip list --outdated --format=freeze | grep -v '^\-e' | cut -d = -f 1  | xargs -n1 pip install -U
 3609  pip list
 3610  pipenv install rdflib
 3611  pip install --user --upgrade --upgrade-strategy pipenv wheel
 3612  pip install --user --upgrade --upgrade-strategy eager pipenv wheel
 3613  pipenv install requests
 3614  ls
 3615  cd
 3616  cd venv
 3617  mkdir ptest
 3618  cp ~/git/hsolbrig/fhir-parser/Pipfile ptest
 3619  cd ptest
 3620  pipenv install
 3621  vim ptest
 3622  vim Pipfile
 3623  pipenv install requests
 3624  pipenv install colorlog
 3625  pipenv install jinja2
 3626  pipenv install markupsafe
 3627  pipenv install crefi
 3628  pipenv install logging
 3629  cp ~/git/hsolbrig/fhir-parser/Pipfile .
 3630  pipenv install
 3631  pipenv pip list
 3632  pipenv run pip list
 3633  pwd
 3634  env
 3635  env | grep -i default
 3636  ls ~/.zshrc
 3637  cat ~/.zshrc
 3638  :q
 3639  ls
 3640  git status
 3641  cat ChangeLog
 3642  git status
 3643  git diff Pipfile
 3644  pipenv lock
 3645  pipenv run pipfile_to_requirements -d
 3646  pipenv run pipenv_to_requirements -d
 3647  pipenv run pipenv_to_requirements -h
 3648  pipenv run pipenv_to_requirements 
 3649  ls
 3650  cat requirements.txt
 3651  git status
 3652  git diff fhirparser/fhirrenderer.py
 3653  cd
 3654  cd git/hsolbrig
 3655  ls
 3656  ls model
 3657  rm -rf model
 3658  ls
 3659  git status
 3660  git add fhirparser/fhirrenderer.py 
 3661  git commit -m "fhirelementfactory.py was built in the wrong spot"
 3662  git status
 3663  git commit -m "Fix requirements issue"
 3664  git commit -am "Fix requirements issue"
 3665  git status
 3666  git tag
 3667  git push
 3668  git tag 
 3669  git tag v0.3.7
 3670  git status
 3671  python setup.py sdist bdist_wheel
 3672  cd dist
 3673  ls
 3674  cd ..
 3675  twine upload dist/*
 3676  git status
 3677  cat Changelog
 3678  ls -l
 3679  ls
 3680  :q
 3681  git status
 3682  git commit -a "Undo last renderer change -- issue was a pypi version"
 3683  git status
 3684  git commit -am "Undo last renderer change -- issue was a pypi version"
 3685  git status
 3686  git tag
 3687  git tag v0.3.8
 3688  git push
 3689  rm dist/*
 3690  python setup.py sdist bdist_wheel
 3691  twine upload dist/*
 3692  vim /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/twine/utils.py:219
 3693  vim /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/twine/utils.py
 3694  pip list
 3695  pip list keyring
 3696  pip install keyring
 3697  git status
 3698  git add ChangeLog
 3699  git commit -m "Version 0.3.8"
 3700  git push
 3701  cd ../fhir_model_generator
 3702  ls
 3703  vim Pipfile
 3704  pipenv install
 3705  vim generate_models.sh
 3706  ls
 3707  rm -rf model tests/model
 3708  ./generate_models.sh
 3709  ./test_models.sh
 3710  ls
 3711  pip list
 3712  git list
 3713  git status
 3714  git diff fhir-parser-resources/settings.py
 3715  git status
 3716  git checkout R5
 3717  git diff Pipfile
 3718  git diff settings.py
 3719  git diff fhir-parser-resources/settings.py
 3720  ls model
 3721  rm -rf model tests/model
 3722  ./generate_models.sh -f
 3723  ./test_models.sh
 3724  git status
 3725  vim .gitfile
 3726  vim .gitignore
 3727  git status
 3728  git add model tests/model
 3729  git status
 3730  git commit -am "R5 build"
 3731  git push
 3732  git checkout R4
 3733  git status
 3734  vim settings.py
 3735  vim fhir-parser-resources/settings.py
 3736  less model/account.py
 3737  git checkout R5
 3738  less model/account.py
 3739  git checkout R4
 3740  less model/account.py
 3741  git pull
 3742  git checkout DSTU3
 3743  vim fhir-parser-resources/settings.py
 3744  ls
 3745  vim .gitfile
 3746  vim .gitignore
 3747  git add .gitignore
 3748  ls
 3749  ./generate_models.sh -f
 3750  vim fhir-parser-resources/settings.py
 3751  ./generate_models.sh -f
 3752  ls downloads
 3753  cat downloads/version.info
 3754  ls downloads/valuesets*
 3755  ls downloads/valueset*
 3756  ./generate_models.sh -f
 3757  pipenv shell
 3758  find /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/ -name fhirloader.py
 3759  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC//lib/python3.7/site-packages/fhirparser/fhirloader.py
 3760  ./generate_models.sh
 3761  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC//lib/python3.7/site-packages/fhirparser/fhirloader.py
 3762  ./generate_models.sh
 3763  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC//lib/python3.7/site-packages/fhirparser/fhirloader.py
 3764  cd downloads
 3765  ls
 3766  ls *.zip
 3767  ls profiles*
 3768  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC//lib/python3.7/site-packages/fhirparser/fhirloader.py
 3769  ./generate_models.sh
 3770  cd ..
 3771  ./generate_models.sh
 3772  less model/account.py
 3773  ./test_models.sh
 3774  ls
 3775  rm -rf model
 3776  vim Pipfile
 3777  rm -rf model tests/model
 3778  ./generate_models.sh -f
 3779  pipenv shell
 3780  pip install -e ~/git/hsolbrig/fhir-parser
 3781  ./generate_models.sh
 3782  pipenv shell
 3783  pip list
 3784  cd ../fhir-parser
 3785  git status
 3786  python setup.py sdist bdist_wheel
 3787  cd ../fhir_
 3788  cd ../fhir_model_generator
 3789  pipenv shell
 3790  pip install -e ~/git/hsolbrig/fhir-parser
 3791  pip install -e ~/git/hsolbrig/fhir-parser --upgrade
 3792  ./generate_models.sh
 3793  pipenv shell
 3794  pip list
 3795  pipenv install -e ~/git/hsolbrig/fhir-parser
 3796  cat Pipfile
 3797  ./generate_models.sh
 3798  pipenv shell
 3799  pip list
 3800  vim Pipfile
 3801  pipenv install ~/git/hsolbrig/fhir-parser
 3802  ./generate_models.sh
 3803  pipenv install ~/git/hsolbrig/fhir-parser/dist/fhirparser-0.3.9.dev1-py3-none-any.whl
 3804  ./generate_models.sh
 3805  pipenv shell
 3806  pip list
 3807  pipenv uninstall fhirparser
 3808  pipenv install fhirparser
 3809  ./generate_models.sh
 3810  cd /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/lib/python3.7/site-packages/fhirparser
 3811  ls
 3812  cp ~/git/hsolbrig/fhir-parser/fhirparser/fhirloader.py .
 3813  cp ~/git/hsolbrig/fhir-parser/fhirparser/fhirspec.py .
 3814  cp ~/git/hsolbrig/fhir-parser/fhirparser/generate.py .
 3815  cd
 3816  cd git/hsolbrig/fhir_model_generator
 3817  ./generate_models.sh
 3818  cd
 3819  cd git/hsolbrig/fhir-parser
 3820  python setup.py sdist bdist_wheel
 3821  pipenv install -e ~/git/hsolbrig/fhir-parser --upgrade
 3822  pipenv install -e ~/git/hsolbrig/fhir-parser --upgradee
 3823  pipenv install -e ~/git/hsolbrig/fhir-parser --upgrade
 3824  pipenv install -e ~/git/hsolbrig/fhir-parser/
 3825  cat Pipenv
 3826  cat Pipfile
 3827  ./generate_models.sh
 3828  ./test_models.sh
 3829  vim test_models.sh
 3830  ./test_models.sh
 3831  git status
 3832  git add model tests/model
 3833  git status
 3834  git diff Default/settings.py
 3835  git checkout -- Default/settings.py
 3836  git status
 3837  git diff fhirparser/fhirloader.py
 3838  git diff fhirparser/fhirspec.py
 3839  git diff fhirparser/generate.py
 3840  git commit -am "Attempt to load files not in the zip file directly from the fhir server"
 3841  git status
 3842  git tag
 3843  git tag v0.3.9
 3844  ls dist
 3845  rm -rf dist
 3846  python setup.py sdist bdist_wheel
 3847  twine upload dist/*
 3848  cat Pipfile
 3849  pip uninstall fhirparser
 3850  vim Pipfile
 3851  pip install fhirparser
 3852  vim Pipfile
 3853  pipenv --rm
 3854  pipenv install
 3855  pipenv run pip list
 3856  ./generate.py
 3857  ./generate_models.sh
 3858  ./test_models.sh
 3859  git status
 3860  git add model
 3861  git diff fhir-parser-resources/settings.py
 3862  git commit -am
 3863  git commit -a
 3864  git status
 3865  git push
 3866  git checkout master
 3867  git fetch
 3868  git checkout DSTU2
 3869  vim settings.py
 3870  vim fhir-parser-resources/settings.py
 3871  vim .gitignore
 3872  rm -rf model tests/model
 3873  ./generate_models.sh
 3874  ./test_models.sh
 3875  vim Pipfile
 3876  pipenv --rm
 3877  ./generate_models.sh
 3878  ./test_models.sh
 3879  vim test_models.sh
 3880  ./test_models.sh
 3881  ls tests/model
 3882  ls downloads
 3883  pipenv install -e ~/git/hsolbrig/fhir-parser
 3884  cat Pipfile
 3885  ./generate_models.sh
 3886  git status
 3887  git checkout DSTU3
 3888  rm -rf model tests/model
 3889  git checkout DSTU3
 3890  git status
 3891  vim Pipfile
 3892  git status
 3893  git add ChangeLog fhirparser/fhirloader.py fhirparser/fhirspec.py
 3894  git commit -m
 3895  git commit 
 3896  git status
 3897  git version
 3898  git tag
 3899  git version v0.4.0
 3900  rm dist/*
 3901  python setup.py sdist bdist_wheel
 3902  git status
 3903  git version v0.4.0 -d
 3904  git tag
 3905  git version v0.4.0
 3906  git tag v0.4.0
 3907  rm dist/*
 3908  python setup.py sdist bdist_wheel
 3909  twine upload dist/*
 3910  cat Pipfile
 3911  pipenv --rm
 3912  pipenv install
 3913  pipenv --rm
 3914  cat Pipfile
 3915  vim Pipfile
 3916  pipenv install fhirparser
 3917  git status
 3918  pipenv lock
 3919  pipenv run pipenv_to_requirements
 3920  git status
 3921  git commit -a
 3922  git status
 3923  git push
 3924  git checkout DSTU3
 3925  vim Pipfile
 3926  pipenv lock
 3927  pipenv run pipenv_to_requirements
 3928  git status
 3929  ./generate_models.sh
 3930  ./test_models.sh
 3931  ls model
 3932  ls tests/model
 3933  ls
 3934  cd ..
 3935  ls
 3936  ls model
 3937  rm model/*
 3938  mkdir model
 3939  chmod 0444 model
 3940  ls -ld model
 3941  cd ..
 3942  find . -name account.py
 3943  ls model
 3944  ls tests
 3945  ls tests/model
 3946  find . -name account_tests.py
 3947  ls
 3948  ./generate_models.sh 2> log
 3949  vim log
 3950  ls
 3951  vim fhir-parser-resources
 3952  cat Pipfile
 3953  pipenv run pip list
 3954  vim log
 3955  pipenv shell
 3956  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/lib/python3.7/site-packages/fhirparser/fhirrenderer.py
 3957  vim generate_models.sh
 3958  ./generate_models.sh
 3959  vim /Users/solbrig/.local/share/virtualenvs/fhir_model_generator-txFPmZYC/lib/python3.7/site-packages/fhirparser/fhirrenderer.py
 3960  ./generate_models.sh
 3961  git checkout R4
 3962  rm -rf model
 3963  rm -rf tests/model
 3964  git checkout R4
 3965  cat Pipfile
 3966  git diff Pipfile
 3967  git diff Pipfile.lock
 3968  git status
 3969  git add Pipfile Pipfile.lock
 3970  git commit -m "Update to new fhirparser version"
 3971  git checkout R4
 3972  vim Pipfile
 3973  ls
 3974  rm model/*
 3975  rm tests/model/*
 3976  ./generate_models.sh
 3977  git status
 3978  git diff model/account.py
 3979  git status | more
 3980  git diff Pipfile
 3981  ls ../model
 3982  pipenv lock
 3983  pipenv run pipenv_to_requirements
 3984  git add reauirements*
 3985  git add requirements*
 3986  git add Pipfile*
 3987  git status
 3988  git add model/fhirelementfactory.py
 3989  git status | more
 3990  ./test_models.sh
 3991  git status
 3992  git commit -m "Fixed issue w/ fhirelementfactory not being generated"
 3993  rm model/*
 3994  rm tests/model/*
 3995  ./generate_models.sh
 3996  ./test_models.sh
 3997  git status
 3998  git push
 3999  git checkout r5
 4000  rm model/* 
 4001  rm tests/model/*
 4002  git status
 4003  git checkout R5
 4004  cat generate_models.sh
 4005  vim generate_models.sh
 4006  git status
 4007  pipenv run pip list
 4008  find . -name fhirabstractbase.py
 4009  vim generate.py
 4010  vim generate_models.sh
 4011  ls generate*
 4012  ./test_models.sh
 4013  ./generate_models.sh 2> generate.log
 4014  vim generate.log
 4015  pwd
 4016  cd hsolbrig/fhir_model_generator
 4017  find . -name fhirabstract*
 4018  git status
 4019  pipenv --rm
 4020  ./generate_models.sh 2> generate.log
 4021  tail generate.log
 4022  ./test_models.sh 2> test.log
 4023  git status
 4024  git diff tests/model/topic_tests.py
 4025  git add tests/model
 4026  git add model
 4027  git status
 4028  pipenv lock
 4029  cat Pipfile
 4030  vim Pipfile
 4031  pipenv pip list
 4032  pipenv run pip list
 4033  pipenv run pip list | grep fhirparse
 4034  pip list
 4035  pip uninstall fhirparser
 4036  pip list
 4037  pip list > zzz
 4038  vim zzz
 4039  cd
 4040  cd Downloads
 4041  ls
 4042  ls 000*
 4043  less 000000\ -\ Andrey\ Fedorov.dcm
 4044  . zzz
 4045  ./zzz
 4046  chmod +x zzz
 4047  ./zzz
 4048  pip list
 4049  pip install pipenv
 4050  pip install rdflib
 4051  pip list
 4052  pipenv --rm
 4053  cat generate_models.sh
 4054  git status
 4055  pipenv install
 4056  pipenv run pipenv_to_requirements
 4057  git list
 4058  git status
 4059  ./generate_models.sh 2> generate.log
 4060  ./test_models.sh 2> test.log
 4061  git status
 4062  cat requirements.txt
 4063  git tag
 4064  git commit -am "Synced with latest fhirparser"
 4065  git push
 4066  git status
 4067  rm log zzz
 4068  ls
 4069  git checkout R4
 4070  git status
 4071  git checkout master
 4072  git status
 4073  cat Pipfile
 4074  git checkout R4
 4075  cat Pipfile
 4076  git checkout R5
 4077  cat Pipfile
 4078  git checkout master
 4079  vim Pipfile
 4080  pipenv lock
 4081  pipenv run pipenv_to_requirements
 4082  git status
 4083  git commit -am "Updated to fhirparser 0.4.0"
 4084  git push
 4085  cd
 4086  cd git/funowl
 4087  ls
 4088  cd git
 4089  cd hsolbrig/funowl
 4090  ls
 4091  git pull
 4092  cd
 4093  cd git/hsolbrig/funowl
 4094  git tag
 4095  git tag v0.1.0
 4096  git status
 4097  git add notebooks
 4098  git status 
 4099  git commit -am "More work on singleton property"
 4100  git status
 4101  git push
 4102  python setup.py sdist bdist_wheel
 4103  cat Pipenv
 4104  cat Pipfile
 4105  vim Pipfile
 4106  pipenv lock
 4107  pipenv run pipenv_to_requirements
 4108  git status
 4109  git tag v0.1.1
 4110  rm dist/*
 4111  git commit -am "Update dependencies"
 4112  git diff requirements.txt
 4113  git push
 4114  rm dist/*
 4115  python setup.py sdist bdist_wheel
 4116  git tag v0.1.3
 4117  python setup.py sdist bdist_wheel
 4118  ls
 4119  ls dist
 4120  rm dist/funowl-0.1.2*
 4121  ls
 4122  cd
 4123  cd venv
 4124  ls
 4125  rm -rf funowl
 4126  cd funowl
 4127  ls
 4128  mkdir funowl
 4129  ls
 4130  cd funowl
 4131  twine upload dist
 4132  pip install twine
 4133  pip list
 4134  twine upload dist
 4135  twine upload dist/*
 4136  pipenv install funowl
 4137  pipenv shell
 4138  python
 4139  cd
 4140  cd git/funowl/tests/data
 4141  ls
 4142  cd git
 4143  cd hsolbrig/funowl/tests
 4144  ls
 4145  cd data
 4146  ls
 4147  mv pizza.owl.out pizza.owl.outold
 4148  diff pizza.owl.out pizza.owl.outold
 4149  vim pizza.owl
 4150  cd
 4151  cd git/hsolbrig/funowl
 4152  ls
 4153  git tag
 4154  git tag v0.1.4
 4155  python setup.py sdist bdist_wheel
 4156  ls dist
 4157  twine upload dist/*
 4158  git status
 4159  git commit -am "Release version 0.1.4"
 4160  git push
 4161  cd
 4162  cd git/hsolbrig/PyShEx
 4163  git status
 4164  git checkout master
 4165  rm tests/data/earl_report.ttl
 4166  git checkout master
 4167  git checkout UserAgent
 4168  git pull
 4169  git checkout UserAgent
 4170  git status
 4171  cd
 4172  cd git/hsolbrig/PyShEx
 4173  pipenv --rm
 4174  pipenv install
 4175  pipenv run pipfile_to_requirements
 4176  pipenv run pipenv_to_requirements
 4177  git tag
 4178  git tag v0.7.10
 4179  git tag
 4180  git tag v0.7.13
 4181  git status
 4182  git commit -am "Update version identifier and refresh Pipfile"
 4183  git status
 4184  python setup.py sdist bdist_wheel
 4185  git push
 4186  cd
 4187  cd 
 4188  cd venv
 4189  ls
 4190  rm -rf pyshex
 4191  mkdir pyshex
 4192  cd pyshex
 4193  pipenv install PyShEx
 4194  pipenv shell
 4195  pip install jupyter
 4196  cd ../git/hsolbrig/PyShEx
 4197  cd ~/git/hsolbrig/PyShEx
 4198  jupyter notebook
 4199  cd
 4200  cd venv/pyshex
 4201  ls
 4202  pipenv run pip list
 4203  cd
 4204  cd git/hsolbrig/PyShEx
 4205  ls
 4206  cat Pipfile
 4207  git tag
 4208  cd
 4209  cd venv/pyshex
 4210  cd
 4211  cd git/pyshex
 4212  cd venv
 4213  ls
 4214  cd pyshex
 4215  pipenv install PyShEx --upgrade
 4216  pip search PyShEx
 4217  cd
 4218  cd git/hsolbrig/PyShEx
 4219  ls dist
 4220  git tag
 4221  git checkout master
 4222  cd
 4223  cd venv
 4224  ls
 4225  cd pyshex
 4226  pipenv install ~/git/hsolbrig/PyShEx
 4227  pipenv shell
 4228  pip lsit
 4229  pip list
 4230  cd
 4231  cd git/hsolbrig/PyShEx
 4232  jupyter notebook
 4233  git status
 4234  git commit -am "Update all the notebooks"
 4235  git push
 4236  git tag
 4237  git fetch
 4238  git checkout master
 4239  git tag
 4240  rm dist/*
 4241  git tag
 4242  git tag v0.7.14
 4243  python setup.py sdist bdist_wheel
 4244  twine upload dist/*
 4245  ls
 4246  ls dist
 4247  git pull
 4248  git commit -am "Update change log"
 4249  git pull
 4250  mv Changelog ~/
 4251  git pull
 4252  git checkout -- ChangeLog
 4253  vim ChangeLog
 4254  mv ~/Changelog ChangeLog
 4255  vim ChangeLog
 4256  git commit -am ChangeLog
 4257  git pull
 4258  find . -name user_agent*
 4259  cd ~/git/hsolbrig/funowl/tests/test_owl2_test_suite/data
 4260  ls
 4261  ls | more
 4262  cp Bnode2somevaluesfrom.func Bnode2somevaluesfrom.owl
 4263  mv Bnode2somevaluesfrom.owl ..
 4264  cd ..
 4265  ls
 4266  cd funwol
 4267  cd funowl
 4268  ls
 4269  rm assertions.py
 4270  cd
 4271  cd git/hsolbrig/fhir_model_generator
 4272  ls
 4273  ./generate_models.sh > generate.log
 4274  cat fhir-parser-resources/settings.py
 4275  git status
 4276  ls tests/model
 4277  vim generate.log
 4278  cat generate
 4279  cat generate.log
 4280  ./generate_models.sh 2> generate.log
 4281  vim generate.log
 4282  ./generate_models.sh 2> generate.log
 4283  vim generate.log
 4284  cat generate.sh
 4285  cat generate_models.sh
 4286  cd downloads
 4287  ls
 4288  ls account*
 4289  ls *account*
 4290  ls *.zip
 4291  gzip --help
 4292  gzip -l examples-json.zip
 4293  zip -l examples-json.zip
 4294  zip --?
 4295  zip --help
 4296  unzip --help
 4297  unzip -l examples-json.zip| more
 4298  unzip -l examples-json.zip | grep account
 4299  cd
 4300  cd Downloads
 4301  mkdir fhirparser
 4302  cd fhirparser
 4303  ls
 4304  unzip -t examples-json.zip| more
 4305  unzip -t examples-json.zip| grep -i example
 4306  cd ..
 4307  grep -r "hl7.org" * | grep ipynb
 4308  cd
 4309  cd git/hsolbrig
 4310  grep -r "hl7.org" * | grep ipynb
 4311  cd
 4312  cd git/HL7/fhir/publish
 4313  grep "Cat" *all*.json
 4314  grep "Cat" *all*.json | grep -v div | more
 4315  grep "Cat " *all*.json | grep -v div | more
 4316  grep -i "Cat " *all*.json | grep -v div | more
 4317  grep -i "Cat " *.json | grep -v div | more
 4318  cd
 4319  cd git/HL7/fhir/publish
 4320  ls account*
 4321  less account.shex
 4322  cd
 4323  cd venv
 4324  mkdir fhir_rdf_validator
 4325  cd fhir_rdf_validator
 4326  cd
 4327  cd ~/git/hsolbrig/fhir_rdf_validator
 4328  git status
 4329  git add LICENSE README setup.* cache
 4330  vim .gitignore
 4331  cp ../funowl/.gitignore .gitignore
 4332  vim .gitignore
 4333  git status
 4334  git add .gitignore Pipfile Pipfile.lock fhir_rdf_validator tests
 4335  git status
 4336  git add README.md setup.cfg setup.py
 4337  git status
 4338  git commit -am "Initial drop"
 4339  git status
 4340  python setup.py sdist bdist_wheel
 4341  cd
 4342  cd venv
 4343  cd fhir_rdf_validator
 4344  pipenv install ~/git/hsolbrig/fhir_rdf_validator
 4345  pipenv shell
 4346  validate
 4347  generate
 4348  pip list
 4349  pip install dirlistproc
 4350  pip list
 4351  pip install rdflib
 4352  pip list
 4353  pip install pyshex
 4354  pip list
 4355  pwd
 4356  rm -rf fhir_rdf_validator
 4357  cd
 4358  cd git/hsolbrig/fhir_rdf_validator
 4359  ls
 4360  pipenv run pipenv_to_requirements
 4361  git list
 4362  git status
 4363  git add Authors ChangeLog requirements.txt
 4364  git commit -am "First cut at distributable"
 4365  git status
 4366  git add AUTHORS
 4367  git commit -am "First cut at distributable"
 4368  git status
 4369  rm dist/*
 4370  python setup.py sdist bdist_wheel
 4371  cd
 4372  cd venv
 4373  mkdir zzfrv
 4374  cd zzfrv
 4375  pipenv install ~/git/hsolbrig/fhir_rdf_validator
 4376  pipenv shell
 4377  validate
 4378  pip install -e ~/git/hsolbrig/fhir_rdf_validator
 4379  validate
 4380  cd
 4381  cd git/hsolbrig/fhir_rdf_validator
 4382  validate -id ~/git/HL7/fhir/publish --shex
 4383  validate -id ~/git/HL7/fhir/publish --shex -cd cache
 4384  cd
 4385  cd git
 4386  cd ~/git/hsolbrig/fhir_rdf_validator
 4387  ls
 4388  git status
 4389  git commit -am "Fix command line issue"
 4390  git remote add origin git@github.com:fhircat/fhir_rdf_validator.git
 4391  git push -u origin master
 4392  cd
 4393  cd git/HL7/fhir
 4394  git pull
 4395  ./puglish.sh
 4396  ./publish.sh
 4397  find . -name "*.class"
 4398  find . -name "*.class" -exec rm {} \;
 4399  ./publish.sh
 4400  pause
 4401  fg
 4402  cd
 4403  cd venv
 4404  ls
 4405  rm -rf zzfrv
 4406  mkdir zzfrv
 4407  cd zzfrvv
 4408  cd zzfrv
 4409  cd
 4410  cd git/FHIRCat
 4411  ls
 4412  git clone git@github.com:fhircat/fhir_rdf_validator.git
 4413  ls
 4414  cd fhir_rdf_validator
 4415  git tag
 4416  git tag v0.0.1
 4417  git status
 4418  python setup.py sdist bdist_wheel
 4419  cd
 4420  cd venv
 4421  ls
 4422  cd zzfrv
 4423  ls
 4424  pwd
 4425  cd
 4426  cd git
 4427  cd FHIRCat
 4428  ls
 4429  cd ../..
 4430  cd venv
 4431  ls
 4432  cd zzrfv
 4433  cd zzfrv
 4434  pipenv install -e ~/git/fhircat/fhir_rdf_validator
 4435  pipenv shell
 4436  ls
 4437  validate --help
 4438  cd
 4439  cd git/fhircat
 4440  ls
 4441  cd fhir_rdf_validator
 4442  ls
 4443  cd ../..
 4444  cd hsolbrig
 4445  cd fhir_rdf_validator
 4446  ls
 4447  validate -id ~/git/HL7/fhir/publish --shex -cd ~/git/hsolbrig/fhir_rdf_validator/cache >log 
 4448  cd
 4449  cd venv/zzfrv
 4450  ls
 4451  tail -f log
 4452  ls
 4453  cp log ~/git/fhircat/fhir_rdf_validator/tests
 4454  cd
 4455  cd git/FHIRCat
 4456  ls
 4457  cd ../hsolbrig/fhir_rdf_validator
 4458  ls
 4459  mv cache ~/git/fhircat/fhir_rdf_validator/tests
 4460  cd
 4461  cd ~/git/fhircat
 4462  ls
 4463  cd fhir_rdf_validator
 4464  ls
 4465  git status
 4466  cat setup.cfg
 4467  pwd
 4468  cd ../..
 4469  cd hsolbrig
 4470  mv fhir_rdf_validator zzzz_fhir_rdf_validator
 4471  cd ..
 4472  mv fhircat FHIRCat
 4473  cd FHIRCat
 4474  ls
 4475  cd fhir_rdf_validator
 4476  ls
 4477  git status
 4478  pipfile lock
 4479  pipenv lock
 4480  pipenv run pipenv_to_requirements
 4481  git status
 4482  git tag
 4483  git tag v0.0.2
 4484  rm dist/*
 4485  python setup.py sdist bdist_wheel
 4486  vim setup.cfg
 4487  ls dist
 4488  ls -l dist
 4489  twine upload dist/*
 4490  python setup.py sdist bdist_wheel
 4491  ls dist
 4492  twine upload dist/*
 4493  python setup.py sdist bdist_wheel
 4494  twine upload dist/*
 4495  python setup.py sdist bdist_wheel
 4496  twine upload dist/*
 4497  git status
 4498  git commit -am "Fix setup issues"
 4499  git push
 4500  cd
 4501  cd git/hsolbrig/fhir-parser
 4502  grep bundle *
 4503  cd fhirparser
 4504  grep bundle *
 4505  vim fhirspec.py
 4506  diff fhirpec.py ../../../stephanie-howson/fhir-parser/fhirspec.py
 4507  ls
 4508  diff fhirspec.py ../../../stephanie-howson/fhir-parser/fhirspec.py
 4509  diff fhirspec.py ../../../stephanie-howson/fhir-parser/fhirspec.py | more
 4510  cd
 4511  cd git/hsolbrig/fhir-parser
 4512  ls
 4513  cd ../fhir_model_generator
 4514  ls
 4515  cat fhir-parser-resources
 4516  cd fhir-parser-resources
 4517  ls
 4518  cd ..
 4519  find . -name *.json
 4520  cd ../fhir-parser
 4521  cd fhirparser
 4522  grep needs *
 4523  vim fhirloader.py
 4524  cd
 4525  cd git/hsolbrig/fhir_model_generator
 4526  ls
 4527  ./generate_models.sh
 4528  cat generate_models.sh
 4529  ./generate_models.sh
 4530  ls model
 4531  cat tests/model
 4532  ls tests/model
 4533  ls
 4534  ls tests
 4535  ls model
 4536  ls tests/model
 4537  cat test_models.sh
 4538  ./test_models.sh
 4539  cd
 4540  cd git/hsolbrig
 4541  ls
 4542  git clone git@github.com:hsolbrig/dirlistproc.git
 4543  c
 4544  cd
 4545  cd git/hsolbrig/funowl
 4546  ls
 4547  git pull
 4548  cd
 4549  cd git/HL7/fhir/publish
 4550  grep Bridg *.json
 4551  grep bridg *.json
 4552  cd
 4553  cd data/terminology/snomedct
 4554  ls
 4555  unzip SnomedCT_Release_VTS1000009_20191001.zip
 4556  ls
 4557  cd SnomedCT_Release_VTS1000009
 4558  ls
 4559  cd Snapshot
 4560  ls
 4561  ls Terminology
 4562  ls Refset
 4563  ls
 4564  cd Terminology
 4565  ls
 4566  wc -l sct2_Concept_Snapshot_VTS_20191001.txt
 4567  cd
 4568  cd venv
 4569  ls
 4570  cd snomedtoowl
 4571  ls
 4572  pipenv run pip list
 4573  lks
 4574  ls
 4575  cat Pipfile
 4576  pipenv install
 4577  pipenv shell
 4578  snomedtoowl
 4579  cd
 4580  cd data/terminology/snomedct
 4581  ls
 4582  cd SnomedCT_Release_VTS1000009
 4583  ls
 4584  cd Snapshot
 4585  ls
 4586  less Terminology
 4587  cd Terminology
 4588  ls
 4589  head sct2_Concept_Snapshot_VTS_20191001.txt
 4590  ls
 4591  man cut
 4592  less sct2_Concept_Snapshot_VTS_20191001.txt
 4593  ls
 4594  cp ~/git/hsolbrig/SNOMEDToOWL/SNOMEDCTToOWL/conf/sct_core_us_gb_skos.json conf.json
 4595  vim conf.json
 4596  ls
 4597  cd ..
 4598  ls
 4599  cd ..
 4600  ls
 4601  less Readme_en_20191001.txt
 4602  cd Snapshot
 4603  ls
 4604  mv Terminology/conf.json .
 4605  vim conf.json
 4606  ls
 4607  SNOMEDToOWL --help
 4608  SNOMEDToOWL . conf.json > VTS.owl 
 4609  pwd
 4610  ls
 4611  cat VTS.owl
 4612  vim Terminology/sct2_Description_Snapshot_en_VTS_20191001.txt
 4613  pip list
 4614  pip install -e ~/git/hsolbrig/SNOMEDToOWL --upgrde
 4615  pip install -e ~/git/hsolbrig/SNOMEDToOWL 
 4616  pip list
 4617  SNOMEDToOWL . conf.json > VTS.owl 
 4618  ls
 4619  ls -l
 4620  SNOMEDToOWL . conf.json -o VTS.owl
 4621  ls
 4622  ls -l Terminology
 4623  cd Terminology
 4624  ls
 4625  vim sct2_Relationship_Snapshot_VTS_20191001.txt
 4626  ls
 4627  cat ../conf.json
 4628  ls
 4629  vim sct2_Relationship_Snapshot_VTS_20191001.txt
 4630  ls
 4631  vim sct2_Description_Snapshot_en_VTS_20191001.txt
 4632  wc -l sct2_Concept_Snapshot_VTS_20191001.txt
 4633  ls
 4634  cd ..
 4635  ls
 4636  less VTS.owl
 4637  cd Terminology
 4638  ls
 4639  vim sct2_Description_Snapshot_en_VTS_20191001.txt
 4640  less ../VTS.owl
 4641  vim sct2_Description_Snapshot_en_VTS_20191001.txt
 4642  SNOMEDToOWL . conf.json -o VTS.owl
 4643  cd ..
 4644  SNOMEDToOWL . conf.json -o VTS.owl
 4645  vim conf.json
 4646  ls
 4647  ls Terminology
 4648  vim conf.json
 4649  SNOMEDToOWL . conf.json -o VTS.owl
 4650  ls
 4651  cd Terminology
 4652  ls
 4653  vim sct2_Description_Snapshot_en_VTS_20191001.txt
 4654  ls
 4655  pwd
 4656  cd
 4657  cd data/terminology/snomedct
 4658  ls
 4659  cd SnomedCT_Release_VTS1000009
 4660  ls
 4661  cd Snapshot
 4662  ls Terminology
 4663  ls
 4664  cd ..
 4665  SNOMEDToOWL . conf.json -o VTS.owl
 4666  less VTS.owl
 4667  pwd
 4668  cd Refset
 4669  ls
 4670  cd Language
 4671  ls
 4672  less der2_cRefset_LanguageSnapshot_en_VTS_20191001.txt
 4673  vim conf.json
 4674  vim der2_cRefset_LanguageSnapshot_en_VTS_20191001.txt
 4675  ls
 4676  cd Terminology
 4677  ls
 4678  vim sct2_Description_Snapshot_en_VTS_20191001.txt
 4679  cd ..
 4680  ls
 4681  cd ..
 4682  vim VTS.owl
 4683  ls
 4684  vim sct2_Relationship_Snapshot_VTS_20191001.txt
 4685  ls
 4686  cd ..
 4687  ls
 4688  cd ..
 4689  ls
 4690  cd Full
 4691  ls
 4692  cd Terminology
 4693  ls
 4694  vim sct2_Relationship_Full_VTS_20191001.txt
 4695  ls
 4696  ls -l
 4697  ssh -L 7300:localhost:7300 ohtosphere.or
 4698  ssh -L 7300:localhost:7300 ohtosphere.org
 4699  ssh -L 7300:localhost:7300 harolds@ohtosphere.org
 4700  vim VTS.owl
 4701  grep rdfs:label VTS.owl| wc -l
 4702  ls -lh
 4703  ls
 4704  cd Terminology
 4705  ls
 4706  \vim sct2_Concept_Snapshot_VTS_20191001.txt
 4707  man sort
 4708  sort -k 
 4709  sort -k 2
 4710  sort -k 2 sct2_Concept_Snapshot_VTS_20191001.txt
 4711  sort -k 2 sct2_Concept_Snapshot_VTS_20191001.txt | more
 4712  sort -k 2 sct2_Concept_Snapshot_VTS_20191001.txt > dtsort
 4713  vim dtsort
 4714  cd ..
 4715  ls
 4716  cd ../Full
 4717  ls
 4718  cd Terminology
 4719  ls
 4720  sort -k 2 sct2_Concept_Full_VTS_20191001.txt > dtsort
 4721  vim dtsort
 4722  uniq -c dtsort
 4723  uniq -c dtsort | more
 4724  vim dtsort
 4725  uniz -c zzsort
 4726  uniq -c zzsort
 4727  uniq -c zzsort More
 4728  uniq -c zzsort | more
 4729  uniq -c zzsort | sort -u
 4730  cd ../
 4731  cd ../Snapshot
 4732  ls
 4733  cd Terminology
 4734  ls
 4735  vim dtsort
 4736  vim dt2019
 4737  sort -k 3 dt2019
 4738  wc -l dt2019
 4739  wc -l dt2018
 4740  wc -l dt2017
 4741  ls
 4742  pwd
 4743  cd ../..
 4744  ls
 4745  cd ..
 4746  ls
 4747  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 4748  ls
 4749  cd Snapshot
 4750  ~/git/hsolbrig/SNOMEDToOWL/scripts/OWLRefsetToOWL.sh > out.owl
 4751  .~/git/hsolbrig/SNOMEDToOWL/scripts/OWLRefsetToOWL.sh > out.owl
 4752  ./~/git/hsolbrig/SNOMEDToOWL/scripts/OWLRefsetToOWL.sh > out.owl
 4753  . ~/git/hsolbrig/SNOMEDToOWL/scripts/OWLRefsetToOWL.sh > out.owl
 4754  ls
 4755  cd Terminology
 4756  . ~/git/hsolbrig/SNOMEDToOWL/scripts/OWLRefsetToOWL.sh > out.owl
 4757  ls
 4758  cd ../..
 4759  ls
 4760  cd Snapshot
 4761  ls
 4762  cd Terminology
 4763  ls
 4764  pwd
 4765  cd ../..
 4766  cd ../SnomedCT_Release_VTS1000009
 4767  ls
 4768  cd Snapshot
 4769  ls
 4770  cd Terminology
 4771  ls
 4772  vim sct2_Relationship_Snapshot_VTS_20191001.txt
 4773  cd
 4774  cd git/hsolbrig
 4775  mkdir VST
 4776  cd VST
 4777  echo # VST >> README.md
 4778  git init
 4779  git add README.md
 4780  git commit -m "Original"
 4781  ls
 4782  ls -a
 4783  echo "$ VST" >> README.MD
 4784  git add README.md
 4785  git commit -m "Original"
 4786  mv README.MD README.md
 4787  git add README.md
 4788  git commit -m "Original"
 4789  git remote add origin git@github.com:hsolbrig/VST.git
 4790  git push -u origin master
 4791  cp ~/data/terminology/snomedct/SnomedCT_Release_VTS1000009/Snapshot/VTS.owl .
 4792  cp ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot/out.owl sct.owl
 4793  ls -lh
 4794  ls -l ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot/
 4795  rm ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot/out.owl
 4796  cp ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot/Terminology/out.owl sct.owl
 4797  ls -lh
 4798  git add VTS.owl
 4799  git commit -m "Owl rendering of VTS"
 4800  git push
 4801  cd
 4802  cd git/hsolbrig
 4803  ls
 4804  cd fhir-parser
 4805  ls
 4806  less setup.cfg
 4807  pwd
 4808  cd ../SNOMEDToOWL
 4809  ls
 4810  rm SNOMEDToOWL.egg-info
 4811  rm -rf SNOMEDToOWL.egg-info
 4812  ls
 4813  git tag v1.0.0
 4814  git status
 4815  git add setup.cfg PipFile PipFile.lock
 4816  vim .gitignore
 4817  git add .gitignore
 4818  git status
 4819  cat Pipfile
 4820  vim Pipfile
 4821  pipenv lock
 4822  git status
 4823  git add Pipfile*
 4824  git commit -m "Switch to pipenv"
 4825  git status
 4826  git commit -am "Switch to pipenv"
 4827  git status
 4828  python setup.py sdist bdist_wheel
 4829  git tag v1.0.1
 4830  python setup.py sdist bdist_wheel
 4831  rm dist/*
 4832  python setup.py sdist bdist_wheel
 4833  cd
 4834  cd venv
 4835  ls
 4836  rm -rf snomedtoowl
 4837  mkdir snomedtoowl
 4838  cd snomedtoowl
 4839  pipenv install ~/git/hsolbrig/SNOMEDToOWL/dist
 4840  pipenv install ~/git/hsolbrig/SNOMEDToOWL/dist/SNOMEDToOWL-1.0.1-py3-none-any.whl
 4841  pipenv shell
 4842  pip list
 4843  CompareRDF
 4844  CompareRDF --help
 4845  Modules
 4846  cd
 4847  cd ~/git/hsolbrig/SNOMEDToOWL
 4848  git status
 4849  git add AUTHORS ChangeLog
 4850  git commit -am "Update scripts"
 4851  git version v1.0.2
 4852  git tag v1.0.2
 4853  rm dist/*
 4854  python setup.py sdist bdist_wheel
 4855  cd
 4856  cd venv
 4857  ls
 4858  cd snomedtoowl
 4859  pipenv install ~/git/hsolbrig/SNOMEDToOWL/dist/SNOMEDToOWL-1.0.2-py3-none-any.whl
 4860  pipenv shell
 4861  CompareRDF
 4862  pipenv --rm
 4863  pipenv install ~/git/hsolbrig/SNOMEDToOWL/dist/SNOMEDToOWL-1.0.2-py3-none-any.whl
 4864  pipenv shell
 4865  pip list
 4866  pipenv install ~/git/hsolbrig/SNOMEDToOWL/dist/SNOMEDToOWL-1.0.2-py3-none-any.whl
 4867  pipenv shell
 4868  pip list
 4869  CompareRDF
 4870  cd ..
 4871  rm -rf snomedtoowl
 4872  mkdir snomedtoowl
 4873  cd snomedtoowl
 4874  pipenv install ~/git/hsolbrig/SNOMEDToOWL/dist/SNOMEDToOWL-1.0.2-py3-none-any.whl
 4875  pipenv shell
 4876  pip list
 4877  rm -rf /Users/solbrig/.local/share/virtualenvs/snomedtoowl-mQLHE7N9
 4878  ls
 4879  rm *
 4880  pipenv install ~/git/hsolbrig/SNOMEDToOWL/dist/SNOMEDToOWL-1.0.2-py3-none-any.whl
 4881  pipenv shell
 4882  pip list
 4883  cd
 4884  cd git/hsolbrig/SNOMEDToOWL
 4885  ls
 4886  rm SNOMEDToOWL.egg-info/*
 4887  rm -rf SNOMEDToOWL.egg-info
 4888  rm -rf build
 4889  rm -rf dist
 4890  python setup.py sdist bdist_wheel
 4891  cd
 4892  cd venv
 4893  cd snomedtoowl
 4894  ls
 4895  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4896  pipenv shell
 4897  pip list
 4898  rm -rf /Users/solbrig/.local/share/virtualenvs/snomedtoowl*
 4899  ls
 4900  cat Pipfile
 4901  pipenv shell
 4902  pip list
 4903  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4904  pipenv shell
 4905  pip list
 4906  pipenv uninstall ~/git/hsolbrig/SNOMEDToOWL
 4907  pipenv install ~/git/hsolbrig/SNOMEDToOWL/dist/SNOMEDToOWL-1.0.2-py3-none-any.whl
 4908  pipenv run pip list
 4909  cat Pipfile
 4910  cd ..
 4911  rm -rf snomedtoowl
 4912  mkdir STO
 4913  cd STO
 4914  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4915  pipenv run pip lis t
 4916  pipenv run pip list
 4917  cd
 4918  cd git/hsolbrig/SNOMEDToOWL
 4919  ls
 4920  rm dist/* 
 4921  rm -rf build
 4922  cat setup.cfg
 4923  python setup.py sdist bdist_wheel
 4924  pipenv run pipfile_to_requirements
 4925  pipenv run pipenv_to_requirements
 4926  python setup.py sdist bdist_wheel
 4927  cd
 4928  cd venv/STO
 4929  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4930  pipenv run pip list
 4931  pipenv shell
 4932  compareRDF
 4933  Modules
 4934  cd ~/git/hsolbrig/S
 4935  cd ~/git/hsolbrig/SNOMEDToOWL
 4936  git list
 4937  git status
 4938  git add requirements.txt
 4939  git commit -am "Setup tweaks"
 4940  git tag
 4941  git tag v1.0.3
 4942  rm dist/*
 4943  python setup.py sdist bdist_wheel
 4944  cd
 4945  cd venv
 4946  cd STO
 4947  pipenv --rm
 4948  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4949  pipenv --rm
 4950  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4951  cd ,,
 4952  pipenv shell
 4953  rm -rf /Users/solbrig/.local/share/virtualenvs/STO*
 4954  ls
 4955  rm P*
 4956  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4957  cd
 4958  cd git/hsolbrig/SNOMEDToOWL
 4959  python setup.py sdist bdist_wheel
 4960  cd
 4961  cd vdnv
 4962  cd venv
 4963  ls
 4964  cd STO
 4965  ls
 4966  pipenv --rm
 4967  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4968  pipenv run CompareRDF
 4969  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 4970  pipenv run CompareRDF
 4971  pipenv run Modules
 4972  pipenv run RF2Filter
 4973  pipenv run SNOMEDToOWL
 4974  pipenv run SNOMEDToOWL --help
 4975  pipenv shell
 4976  cd ~/data/terminology/snomedct
 4977  ls
 4978  cd SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z
 4979  ls
 4980  cd Snapshot
 4981  ls
 4982  cd Terminology
 4983  ls
 4984  cd ..
 4985  SNOMEDToOWL --help
 4986  SNOMEDToOWL .
 4987  cd
 4988  cd venv/STO
 4989  ls
 4990  which SNOMEDToOWL
 4991  cd /Users/solbrig/.local/share/virtualenvs/STO-4uA3Z8Da/
 4992  ls
 4993  find . -name sct_core_gb.json
 4994  pwd
 4995  which SNOMEDToOWL
 4996  cd
 4997  cd git/biolink/biolinkml
 4998  ls
 4999  git status
 5000  git pull
 5001  git diff tests/source/biolink_import_map.json
 5002  cd tests/source
 5003  vim biolink_import_map.json
 5004  git status
 5005  git checkout issue_70 
 5006  git diff tests/source/biolink_import_map.json
 5007  cd
 5008  cd git/HL7/publish
 5009  cd ~/git/HL7/fhir/publish
 5010  ls *.shex
 5011  ls fhir.shex
 5012  less fhir.shex
 5013  ls *.shexj
 5014  ls *.ttl
 5015  cp v[ei]*.ttl ~/git/FHIRCat/fhir_rdf_validator/tests/data_in
 5016  cd ~/git/FHIRCat/fhir_rdf_validator/tests/data_in
 5017  ls
 5018  mkdir subdir
 5019  mv verificationresult-example.ttl subdir
 5020  cd ../data_compare
 5021  ls
 5022  cp -r ../data_in/* .
 5023  ls
 5024  cd
 5025  cd git/hsolbrig
 5026  find . -name *help
 5027  cd fhir-parser/tests
 5028  ls
 5029  cd fhir-parser/tests/
 5030  pwd
 5031  ls
 5032  cat test_cli.py
 5033  less test_cli.py
 5034  vim test_cli.py
 5035  cd
 5036  cd git/HL7/fhir/publish
 5037  ls visionprescription*.shex
 5038  cp visionprescription.shex ~/git/FHIRCat/fhir_rdf_validator/tests/data_in
 5039  cp verificationresult.shex ~/git/FHIRCat/fhir_rdf_validator/tests/data_in
 5040  cd ..
 5041  cd ../FHIRCat
 5042  ls
 5043  git clone git@github.com:fhircat/shex_to_shexj.git
 5044  cd shex_to_shexj
 5045  ls
 5046  mkdir shex_to_shexj
 5047  cd shex_to_shexj
 5048  cp ~/git/FHIRCat/fhir_rdf_validator/fhir_rdf_validator/shex_to_shexj.py .
 5049  ls
 5050  pwd
 5051  cd ..
 5052  cd shex_to_shexj
 5053  vim __init__.py
 5054  ls
 5055  cd ..
 5056  mkdir tests
 5057  cd tests
 5058  ls
 5059  mkdir data_in
 5060  mkdir data_out
 5061  cd data_in
 5062  cp -r ~/git/FHIRCat/fhir_rdf_validator/tests/data_in/* .
 5063  ls
 5064  ls subdir
 5065  mv shexj_help help
 5066  cp ~/git/FHIRCat/fhir_rdf_validator/tests/test_shex_to_shexj.py ..
 5067  cd ..
 5068  ls
 5069  ls data_in
 5070  ls data_out
 5071  cat help
 5072  cd ..
 5073  vim .gitignore
 5074  ls
 5075  ls tests
 5076  cp ~/git/FHIRCat/fhir_rdf_validator/setup.* .
 5077  ls
 5078  vim setup.cfg
 5079  cat ~/git/FHIRCat/fhir_rdf_validator/Pipfile
 5080  cd
 5081  cd git/FHIRCat
 5082  ls
 5083  cd shex_to_shexj
 5084  ls
 5085  git tag v0.1.0
 5086  python setup.py sdist bdist_wheel
 5087  cd
 5088  cd venv
 5089  mkdir ssj
 5090  cd ssj
 5091  pipenv install ~/git/FHIRCat/shex_to_shexj
 5092  pipenv run shex_to_shexj
 5093  cd
 5094  cd git/FHIRCat/shex_to_shexj
 5095  vim Pipfile
 5096  pipenv lock
 5097  pipenv run pipenv_to_requirements
 5098  ls
 5099  git status
 5100  git add AUTHORS ChangeLog requirements.txt
 5101  git commit -am "Setting up pypi"
 5102  ls
 5103  rm dist/*
 5104  python setup.py sdist bdist_wheel
 5105  cd
 5106  cd venv
 5107  ls
 5108  rm -rf ssj
 5109  mkdir ssj
 5110  cd ssj
 5111  pipenv install ~/git/FHIRCat/shex_to_shexj
 5112  pipenv run shex_to_shexj
 5113  ls
 5114  pwd
 5115  pipenv shell
 5116  cp ~/git/HL7/fhir/publish/fhir.shex .
 5117  shex_to_shexj -i fhir.shex -o fhir.shexj
 5118  ls
 5119  git status
 5120  git commit -am "New build"
 5121  twine upload dist/*
 5122  git tag v0.1.2
 5123  rm dist/*
 5124  python setup.py sdist bdist_wheel
 5125  twine upload dist/*
 5126  ls
 5127  less README.md
 5128  git status
 5129  vim README.md
 5130  git status
 5131  git commit -am "Force README update"
 5132  git push
 5133  cd
 5134  cd venv/ssj
 5135  ls
 5136  wc -l fhir.shex
 5137  ls -l
 5138  ls -lh
 5139  less fhir.shexj
 5140  pwd
 5141  cd
 5142  cd git/FHIRCat
 5143  ls
 5144  git clone git@github.com:fhircat/fhir_to_jsonld_context.git
 5145  ls
 5146  cd fhir_to_jsonld_context
 5147  ls
 5148  cd shexj
 5149  cp ~/venv/ssj/fhir.shexj .
 5150  git status
 5151  git add fhir.shexj
 5152  git commit -m "Add fhir.shexj"
 5153  git push
 5154  cd shexj
 5155  ls
 5156  mv fhir.shexj r5
 5157  git status
 5158  git add r5/fhir.shexj
 5159  git commit -am "Move fhir.shexj to r5 directory"
 5160  git push
 5161  shex_to_shexj -id ~/git/HL7/fhir/publish -od ~/git/FHIRCat/fhir_to_jsonld_context/shexj/r5
 5162  mv ~/git/HL7/fhir/publish/fhir.shex .
 5163  shex_to_shexj -id ~/git/HL7/fhir/publish -od ~/git/FHIRCat/fhir_to_jsonld_context/shexj/r5
 5164  cd ~/git/FHIRCat/fhir_to_jsonld_context
 5165  ls
 5166  git status
 5167  ls shexj/r5/*
 5168  git status
 5169  git add shexj
 5170  git status
 5171  git commit -am "Add all Profile ShEx representations"
 5172  git push
 5173  cd
 5174  cd venv
 5175  ls
 5176  cd
 5177  cd venv
 5178  rm -rf ssh
 5179  rm -rf STO
 5180  cd STO
 5181  mkdir STO
 5182  cd STO
 5183  pipenv install ~/git/hsolbrig/SNOMEDToOWL
 5184  cd
 5185  cd git
 5186  cd biolink
 5187  ls
 5188  ls -l
 5189  mv biolinkml biolinkmlm2
 5190  git clone git@github.com:biolink/biolinkml.git
 5191  cd
 5192  cd ~/git
 5193  ls
 5194  mkdir NCI-GDC
 5195  cd NCI-GDC
 5196  ls
 5197  git clone https://github.com/NCI-GDC/gdcdatamodel.git
 5198  cd gdcdatamodel
 5199  ls
 5200  pipenv install .
 5201  ls
 5202  cat setup.py
 5203  ls
 5204  cat Pipfile
 5205  rm Pipfile Pipfile.lock
 5206  cd
 5207  cd venv
 5208  mkdir gcddatamodel
 5209  cd gcddatamodel
 5210  pipenv install ~/git/NCI-GDC/gdcdatamodel
 5211  pipenv shell
 5212  pip install ~/git/NCI-GDC/gdcdatamodel
 5213  cat ~/git/NCI-GDC/gdcdatamodel/setup.py
 5214  pip search gdc_ng_models
 5215  pip search dirlistproc
 5216  pip install git+https://github.com/NCI-GDC/gdc-ng-models.git@1.1.0#egg=gdc_ng_models
 5217  pip list
 5218  pip install ~/git/NCI-GDC/gdcdatamodel
 5219  pip list
 5220  which pip
 5221  pip install -r ~/git/NCI-GDC/gdcdatamodel/dev-requirements.txt
 5222  PG_USER=* PG_HOST=* PG_DATABASE=* PG_PASSWORD=*   jupyter notebook examples/jupyter_example.ipynb\n
 5223  cd 
 5224  cd git/NCI-GDC/gdcdatamodel
 5225  ls
 5226  PG_USER=* PG_HOST=* PG_DATABASE=* PG_PASSWORD=*   jupyter notebook examples/jupyter_example.ipynb\n
 5227  ls
 5228  PG_USER=* PG_HOST=* PG_DATABASE=* PG_PASSWORD=*   jupyter notebook \n
 5229  pip list
 5230  pip install jupyter
 5231  jupyter notebook
 5232  pip install --upgrade jupyter_core jupyter_client
 5233  jupyter notebook
 5234  pip install misc
 5235  ls
 5236  find . -name misc
 5237  PG_USER=* PG_HOST=* PG_DATABASE=* PG_PASSWORD=*   jupyter notebook examples/jupyter_example.ipynb
 5238  cd
 5239  cd git/NCI-GDC
 5240  ls
 5241  cd gdcdatamodel
 5242  ls
 5243  grep -r misc *
 5244  grep -r FileReport * | grep \.py
 5245  grep -r FileReport * | grep \.py$
 5246  find . -name misc.py
 5247  cd gdcdatamodel/models
 5248  ls
 5249  vim misc.py
 5250  cd ..
 5251  vim /.local/share/virtualenvs/gcddatamodel-RIqN7-HS/lib/python3.7/site-packages/gdcdatamodel/models/__init__.py
 5252  vim ~/.local/share/virtualenvs/gcddatamodel-RIqN7-HS/lib/python3.7/site-packages/gdcdatamodel/models/__init__.py
 5253  grep -r Case *
 5254  cd ..
 5255  grep -r Case *
 5256  grep -r "def Case" *
 5257  grep -r "Case" * | more
 5258  cd
 5259  cd git/FHIRCat
 5260  ls
 5261  cd fhir_to_jsonld_context
 5262  ls
 5263  cd jsonldc
 5264  ls
 5265  cd contexts
 5266  ls
 5267  cd r4
 5268  cd r5
 5269  ls
 5270  pwd
 5271  vim code.context.jsonld
 5272  ls
 5273  cd
 5274  cd git/biolink/biolinkml
 5275  ls
 5276  git status
 5277  git pull
 5278  git checkout issue_80
 5279  cd
 5280  find . -name semantic*
 5281  cd Development
 5282  ls
 5283  rm -rf semanticturkey-5.0
 5284  mv ~/Downloads/semanticturkey-6.0\ 2 .
 5285  ls
 5286  cd semanticturkey-6.0\ 2
 5287  ls
 5288  cat BUILD.txt
 5289  ls bin
 5290  cd bin
 5291  ./start
 5292  . start
 5293  cat start
 5294  chmod +x start
 5295  ./start
 5296  ls
 5297  cat setenv
 5298  ls
 5299  ps
 5300  cat client
 5301  chmod +x client
 5302  ./client
 5303  ps
 5304  cd ..
 5305  ls
 5306  cat BUILD.txt
 5307  ls bin
 5308  ls data
 5309  ls deploy
 5310  cat deploy/README
 5311  cd
 5312  cd Development/
 5313  ls
 5314  cd semanticturkey-6.0\ 2
 5315  ls
 5316  cd bin
 5317  ls
 5318  ./karaf
 5319  . karaf
 5320  . ./karaf
 5321  chmod +x karaf
 5322  ./karaf
 5323  ps
 5324  ps -aef | grep kara
 5325  ls
 5326  cat stop
 5327  stop
 5328  chmod +x stop
 5329  ./stop
 5330  ls
 5331  chmod +x shell
 5332  chmod +x instance
 5333  chmod +x setenv
 5334  less karaf
 5335  ./karaf
 5336  pwd
 5337  cd ..
 5338  grep -r administrator
 5339  grep -r administrator *
 5340  ls
 5341  cd
 5342  find . -name *semantic*
 5343  find . -name *semanticturkey*
 5344  find . -name *semanticturkey* | grep -v find: | grep -v Development
 5345  pwd
 5346  cd Downloads
 5347  ls
 5348  cd semanticturkey-6.0
 5349  cd ..
 5350  ls semantic*
 5351  ls *.zip
 5352  ls
 5353  rm vocbench3-5.0.0_full.zip
 5354  ls
 5355  cd ~/Development
 5356  ls
 5357  cd semanticturkey-6.0\ 2
 5358  ls
 5359  grep -r administrator *
 5360  ls
 5361  cd bin
 5362  cd ../data
 5363  ls
 5364  cat log
 5365  cd log
 5366  ls
 5367  cat security.log
 5368  cat karaf.log
 5369  ls
 5370  vim karaf.log
 5371  ls
 5372  cd ..
 5373  ls
 5374  ls port
 5375  ls -l
 5376  cat port
 5377  ls kar
 5378  ls generated-bundles
 5379  ls pax-web-jsp
 5380  cd pax-web-jsp/vocbench3
 5381  ls
 5382  la -z
 5383  ls -z
 5384  ls -a
 5385  cd ..
 5386  ls
 5387  cd semanticturkey
 5388  ls -a
 5389  cd ..
 5390  ls
 5391  cd ..
 5392  ls
 5393  cd ..
 5394  ls
 5395  cd ..
 5396  ls
 5397  cd SemanticTurkeyData
 5398  ls
 5399  cd ..
 5400  rm -rf SemanticTurkeyData
 5401  cd semanticturkey-6.0\ 2
 5402  ls
 5403  cd bin
 5404  ls
 5405  ./karaf
 5406  cd
 5407  cd Development/semanticturkey-6.0\ 2
 5408  ls
 5409  mv index.rdf.owl index.rdf
 5410  ./karaf
 5411  cd
 5412  cd data
 5413  find . -name VTS*
 5414  ls
 5415  cd terminology/snomedct/SnomedCT_Release_VTS1000009
 5416  ls
 5417  cd Snapshot
 5418  ls
 5419  less VTS.owl
 5420  mv VTS.owl VTS.ttl
 5421  mv VTS.ttl VTS.rdf
 5422  ./karaf
 5423  cd
 5424  cd git
 5425  find . -name VTS*
 5426  ls
 5427  vim `find . -name VTS*`
 5428  vim `find . -name VTS*\n`
 5429  cd hsolbrig
 5430  cd VST
 5431  vim VTS.owl
 5432  cd
 5433  cd git/biolink
 5434  cd biolinkml
 5435  git pull
 5436  git fetch
 5437  git status
 5438  git pull
 5439  git checkout master
 5440  git pull
 5441  git status
 5442  git checkout issue_84
 5443  cd ..
 5444  grep -r issue_50 *
 5445  cd biolinkmlm1
 5446  ls
 5447  grep -r issue-50 *
 5448  grep -r issue_50 *
 5449  cd ..
 5450  grep -r issue_50 *
 5451  cd biolinkmlm1
 5452  git branch
 5453  git checkout noslotdomaininferenc 
 5454  cd ..
 5455  find . -name DistributedModels*
 5456  cd biolinkml
 5457  git status
 5458  cd ../biolinkmlm1
 5459  ls
 5460  git status
 5461  ls
 5462  git checkout noslotdomaininferenc
 5463  git stash
 5464  git status
 5465  git checkout noslotdomaininferenc
 5466  vim notebooks/DistributedModels.ipynb
 5467  ls
 5468  cp ../biolinkml/notebooks/DistributedModels.ipynb notebooks
 5469  git checkout noslotdomaininferenc
 5470  git reset --merge
 5471  git diff
 5472  git status
 5473  git status | more
 5474  git status | grep -v tests
 5475  git diff biolinkml/meta.py
 5476  git status
 5477  git branch
 5478  git checkout noslotdomaininferenc
 5479  git checkout -- notebooks/DistributedModels.ipynb
 5480  git revert notebooks/DistributedModels.ipynb
 5481  cd
 5482  cd git/HL7/fhir
 5483  find . -iname *shex*
 5484  find . -iname *shex* | grep -v publish
 5485  cat ./implementations/java/org.hl7.fhir.rdf/src/org/hl7/fhir/rdf/ShExValidator.java | more
 5486  pwd
 5487  cd publish
 5488  ls
 5489  grep "_[a-z]" *.json
 5490  grep '"_[a-z]' *.json
 5491  grep '"_[a-z]' *.json | more
 5492  VIM activitydefinition-example.json
 5493  grep '"_[a-z]' *.json | more | grep -v _event
 5494  grep '"_[a-z]' *.json | more | grep -v _event | more
 5495  grep '"_[a-z]' *.json | more | grep -v _event |grep -v '"text"' | more
 5496  grep '"_[a-z]' *.json | more | grep -v _event |grep -v '"text"' | grep -v fhir.schema | more
 5497  cd 
 5498  cd git/HL7/fhir/publish
 5499  vim message-request-link.json
 5500  grep '"active"' *.json
 5501  grep '"active":' *.json
 5502  vim person-grahame.ttl
 5503  grep fhir:Extension *.ttl | more
 5504  vim activitydefinition-predecessor-example.ttl
 5505  vim fhir.ttl
 5506  cd
 5507  cd git/HL7/fhir
 5508  cd publish
 5509  ls *.shex
 5510  less insuranceplan.shex
 5511  cd ..
 5512  grep -r "start=@" *.java
 5513  pwd
 5514  find . -name *.java -exec grep "start=@" {} \;
 5515  find . -name *.java -exec grep "start=\" {} \;\nfind . -name *.java -exec grep "start=" {} \;
 5516  grep -r "start=" *
 5517  find . -name *.java -exec grep "start=" {} \;\nfind . -name *.java -exec grep "start=" {} \;
 5518  find . -name *.java
 5519  find . -iname *rdf*.java
 5520  cd tools/java/org.hl7.fhir.tools.core/src/org/hl7/fhir/tools/implementations/java
 5521  vim JavaParserRdfGenerator.java
 5522  ls
 5523  grep start *
 5524  grep '"start' *
 5525  grep 'start=' *
 5526  pwd
 5527  cd ../..
 5528  pwd
 5529  cd ~/git/HL7/fhir
 5530  grep -r "start=" *
 5531  grep -r "start=" * | grep ".java"
 5532  man grep
 5533  grep -rH "start=" * | grep ".java"
 5534  grep -rH "start=" * | grep ".java" | grep -v "this."
 5535  cd
 5536  cd git/HL7/fhir
 5537  cd publish
 5538  vim account.shex
 5539  grep -rH CLOSED * | more
 5540  grep -rH CLOSED * | grep -v shex:
 5541  grep -rH CLOSED * | grep -v shex: | grep -v shex.html:
 5542  grep -rH CLOSED * | grep -v shex: | grep -v shex.html: | grep -v ^temp
 5543  pwd
 5544  grep -rH CLOSED * | grep java: |  grep -v ^temp
 5545  grep -rH template * | grep java:
 5546  grep -rH fhir:nodeRole * | grep java:
 5547  vim tools/java/org.hl7.fhir.tools.core/src/org/hl7/fhir/definitions/generators/specification/TurtleSpecGenerator.java
 5548  cd tools/java/org.hl7.fhir.tools.core/src/org/hl7/fhir/definitions/generators/specification
 5549  ls
 5550  grep -i start *
 5551  grep -i start= *
 5552  grep '<' *
 5553  grep '<' * | grep -v Xml
 5554  vim TurtleSpecGenerator.java
 5555  grep "{" *
 5556  grep '"{' *
 5557  ls
 5558  vim TurtleSpecGenerator.java
 5559  grep nodeRole *
 5560  grep start *
 5561  grep start * | grep -i rdf
 5562  grep start * | grep -i turtle
 5563  grep start * | grep -i turtle | grep -v startsWith
 5564  grep BASE *
 5565  grep -r BASE *
 5566  grep base *
 5567  pwd
 5568  cd
 5569  cd git/HL7/fhir
 5570  cd /Users/solbrig/git/HL7/fhir/tools/java/org.hl7.fhir.tools.core/src/org/hl7/fhir/definitions/generators
 5571  ls
 5572  pwd
 5573  cd specification
 5574  ls
 5575  vim TurtleSpecGenerator.java
 5576  grep treeRoot *
 5577  vim TurtleSpecGenerator.java
 5578  cd
 5579  cd git/HL7/fhir
 5580  grep -r treeRoot *
 5581  grep -r treeRoot * | grep -v html: | grep -v shex:
 5582  cd
 5583  cd git/biolink
 5584  ls
 5585  cd biolinkmlm2
 5586  ls
 5587  git branch
 5588  cd ../biolinkmlm1
 5589  git branch
 5590  git checkout noslotdomaininferenc 
 5591  git add notebooks/DistributedModels.ipynb
 5592  git commit -m "Trying to get this out of the way"
 5593  git status
 5594  git checkout noslotdomaininferenc 
 5595  git status | grep -v tests
 5596  git diff biolinkml/generators/__init__.py
 5597  git diff biolinkml/generators/pythongen.py
 5598  git diff biolinkml/meta.py
 5599  git checkout noslotdomaininferenc 
 5600  git stash
 5601  git checkout noslotdomaininferenc 
 5602  git status
 5603  ls
 5604  cd biolinkml
 5605  ls
 5606  cd utils
 5607  ls
 5608  diff schemaloader.py ~/git/biolink/biolinkml/biolinkml/utils/schemaloader.py
 5609  diff schemaloader.py ~/git/biolink/biolinkml/biolinkml/utils/schemaloader.py | more
 5610  grep -r treeRoot * | grep -v html: | grep -v shex: | grep -v ^publish
 5611  cd
 5612  cd git/biolink/biolinkml
 5613  vim biolinkml/generators/yumlgen.py
 5614  pwd
 5615  cd ..
 5616  ls
 5617  grep -rH CLOSED | grep java:
 5618  grep -rH CLOSED * | grep java:
 5619  git status
 5620  git checkout master
 5621  pwd
 5622  rm -rf docs
 5623  git checkout issue_84
 5624  git stash
 5625  git checkout issue_84
 5626  pwd
 5627  cd tests/source
 5628  ls
 5629  rm -rf meta_mappings_docs
 5630  ls docs
 5631  pwd
 5632  cd ../..
 5633  ls
 5634  rm -rf docs
 5635  cd tests/test_biolink_model
 5636  cd source
 5637  ls
 5638  rm -rf markdown
 5639  cd ..
 5640  ls
 5641  pwd
 5642  cd test_scripts/output
 5643  ls
 5644  cd genmarkdown
 5645  ls
 5646  rm -rf issue2 meta
 5647  pwd
 5648  rm -rf issue2 meta
 5649  cd ../..
 5650  ls
 5651  cd ..
 5652  ls
 5653  cd ..
 5654  cd tests/source/
 5655  ls
 5656  rm -rf meta_mappings_docs
 5657  cd ..
 5658  ls
 5659  rm -rf docs
 5660  cd tests/test_biolink_model
 5661  cd source
 5662  ls
 5663  rm -rf markdown
 5664  git checkout master
 5665  git pull
 5666  git tag
 5667  pip search biolinkml
 5668  git tag
 5669  git tag v1.4.9
 5670  git tatg
 5671  git tag
 5672  ls
 5673  cd ..
 5674  ls
 5675  cd ..
 5676  ls
 5677  pwd
 5678  cd ..
 5679  ls
 5680  ls dist
 5681  python setup.py sdist bdist_wheel
 5682  ls dist
 5683  ls
 5684  cat setup.cfg
 5685  cat setup.py
 5686  ls
 5687  git status
 5688  twine upload dist/*
 5689  git pull
 5690  git checkout issue_83
 5691  cd
 5692  cd git
 5693  ls
 5694  cd FHIRCat
 5695  git clone git@github.com:fhircat/fhir_to_jsonld_context.git
 5696  cd fhir_to_jsonld_context
 5697  git pull
 5698  yarn
 5699  brew install yarn
 5700  pwd
 5701  ls
 5702  yarn install
 5703  ls
 5704  mkdir test
 5705  cd test
 5706  wget http://build.fhir.org/examples-json.zip
 5707  cd ..
 5708  babel-node src/fhir-convert.js -f test/examples-json.zip -t output
 5709  babel-node
 5710  node_modules/.bin/babel-node src/fhir-convert.js -f test/examples-json.zip -t output
 5711  ls
 5712  pwd
 5713  cd
 5714  ls
 5715  cd output
 5716  ls
 5717  ls output
 5718  ls
 5719  ls json
 5720  ls
 5721  ls nquads
 5722  cd nquads
 5723  less account-example.nq
 5724  grep UNKNOWN *
 5725  grep UNKNOWN * | more
 5726  pwd
 5727  cd ../json
 5728  vim activitydefinition-administer-zika-virus-exposure-assessment.json
 5729  vim activitydefinition-medicationorder-example.json
 5730  cd ~/git/HL7/fhir/publish
 5731  vim activitydefinition-medicationorder-example.json
 5732  vim activitydefinition.shex
 5733  vim activitydefinition.profile.json
 5734  cd ..
 5735  ls
 5736  cd nquads
 5737  grep UNKNOWN#_ *
 5738  grep UNKNOWN# * | grep -v #_
 5739  grep UNKNOWN# *
 5740  grep UNKNOWN# * | grep -v #_
 5741  grep UNKNOWN# * | grep -v \#_
 5742  grep UNKNOWN# * | grep -v \#_ | more
 5743  vim administrableproductdefinition-questionnaire.json
 5744  vim administrableproductdefinition-questionnaire.nq
 5745  python
 5746  vim *.ttl
 5747  cd
 5748  ls
 5749  cd ../..
 5750  ls
 5751  cd jsonldc
 5752  cd ../shexj
 5753  cd r5
 5754  vim administrableproductdefinition.shexj
 5755  cd ../../
 5756  cd tests
 5757  ls
 5758  cd test
 5759  cd ../output
 5760  ls
 5761  cd nquads
 5762  grep UNKNONWN#_ * | more
 5763  grep UNKNONWN#_ * 
 5764  grep UNKNOWN#_ * | more
 5765  cd ../../
 5766  ls
 5767  cd shexj/r5
 5768  vim activitydefinition.shexj
 5769  vim activitydefinition.profile.json
 5770  pwd
 5771  cd git/HL7/fhir/publish
 5772  pwd
 5773  vim activitydefinition.profile.json
 5774  vim domainresource.profile.json
 5775  vim domainresource.shexj
 5776  cd
 5777  cd /Users/solbrig/.local/share/virtualenvs/biolinkml-UM_qfE51/lib/python3.7/site-packages/yaml
 5778  grep start_mark *
 5779  grep start_mark * | more
 5780  vim events.py
 5781  grep MappingNode *
 5782  grep MappingNode * | grep class
 5783  vim nodes.py
 5784  cd
 5785  cd git/HL7/fhir
 5786  ls
 5787  cd publish
 5788  ls *.zip
 5789  cd
 5790  cd git/FHIRcat
 5791  ls
 5792  cd shex_to_shexj
 5793  mkdir source
 5794  cd source
 5795  wget http://build.fhir.org/fhir.schema.shex.zip
 5796  unzip fhir.schema.shex.zip
 5797  ls
 5798  cd
 5799  cd git/HL7/fhir/publish
 5800  ls *.zip
 5801  cd
 5802  cd git/HL7/fhir
 5803  git pull
 5804  git stash
 5805  git pull
 5806  . publish.sh
 5807  ./publish.sh
 5808  pwd
 5809  cd
 5810  cd git/FHIRCat
 5811  ls
 5812  cd fhir_to_jsonld_context
 5813  ls
 5814  cd output
 5815  ls
 5816  ls json
 5817  pwd
 5818  ls
 5819  cd json
 5820  ls
 5821  pwd
 5822  cd ../..
 5823  ls
 5824  find account*
 5825  find . -name account*
 5826  cd ..
 5827  find . -name account*
 5828  less ./fhir_to_jsonld_context/output/json/account-example.json
 5829  grep -r fhircat.org *
 5830  ls
 5831  ls output
 5832  cd output
 5833  cd nquads
 5834  ls
 5835  less account-example-with-guarantor.nq
 5836  cd
 5837  cd git/FHIRCat
 5838  ls
 5839  cd shex_to_shexj
 5840  ls
 5841  ls tests
 5842  cd tests
 5843  ls
 5844  ls data_in
 5845  ls data_out
 5846  cd
 5847  cd git/FHIRCat
 5848  ls
 5849  find . -name *.shexj
 5850  cd fhir_to_jsonld_context
 5851  ls
 5852  mv shexj shexjm1
 5853  pipenv install shex_to_shexj
 5854  shex_to_shexj -id ~/git/HL7/fhir/publish -od shexj/r5
 5855  pipenv run shex_to_shexj -id ~/git/HL7/fhir/publish -od shexj/r5
 5856  pwd
 5857  ls
 5858  ls shexj
 5859  mkdir shexj
 5860  mkdir shexj/r5
 5861  pipenv run shex_to_shexj -id ~/git/HL7/fhir/publish -od shexj/r5
 5862  cd
 5863  cd git/FHIRCat/fhir_to_jsonld_context
 5864  ls
 5865  cd shexj
 5866  cd r5
 5867  ls
 5868  less activitydefinition.shexj
 5869  find . -name *kdn5*
 5870  cd ..
 5871  find . -name *kdn5*
 5872  cd ..
 5873  find . -name *kdn5*
 5874  cd output/nquads
 5875  python
 5876  pwd
 5877  ls
 5878  ls *kdn5*
 5879  python
 5880  grep Bundle.entry.resource *
 5881  python
 5882  ls medicationrequest*
 5883  ls medicationrequeste*
 5884  pwd
 5885  cd ~/git/FHIRCat/fhir_to_jsonld_context
 5886  ls
 5887  ls shexj
 5888  ls shexj/r5
 5889  pwd
 5890  ls
 5891  cd shexjm1
 5892  ls
 5893  cd ..
 5894  cd output
 5895  ls
 5896  cd nquads
 5897  ls *.ttl
 5898  vim plandefinition-example-kdn5-simplified.ttl
 5899  vim diagnosticreport-micro1.ttl
 5900  grep DomainResource.contained * | more
 5901  vim activitydefinition-questionnaire.nq
 5902  ls
 5903  less account-example.nq
 5904  cd ..
 5905  ls
 5906  cd json
 5907  les account-example.json
 5908  less account-example.json
 5909  cd
 5910  cd git/HL7/fhir
 5911  find . -name *generator*
 5912  cd ./tools/java/org.hl7.fhir.tools.core/src/org/hl7/fhir/definitions/generators
 5913  ls
 5914  cd specification
 5915  ls
 5916  vim TurtleSpecGenerator.java
 5917  vim FhirTurtleGenerator.java
 5918  pwd
 5919  cd ~/git/HL7/fhir
 5920  grep -r '"CLOSED"' *
 5921  pwd
 5922  cd publish
 5923  ls
 5924  vim account.shex
 5925  grep -rH  treeRoot * | more
 5926  grep -rH  treeRoot * | grep -v ttl: | grep -v html: | grep -v shex:
 5927  pwd
 5928  cd ..
 5929  find . -name generate
 5930  find . -name generator
 5931  find . -name *generator*
 5932  cd ./tools/java/org.hl7.fhir.tools.core/src/org/hl7/fhir/definitions/generators
 5933  ls
 5934  cd specification
 5935  ls
 5936  vim JsonSpecGenerator.java
 5937  pwd
 5938  cd
 5939  cd git/HL7/fhir
 5940  cd publish
 5941  ls
 5942  vim account.shex
 5943  :q
 5944  cd ..
 5945  find . -name ShExGenerator.java
 5946  pwd
 5947  ls integer.shex
 5948  cd publish
 5949  ls integer.s*&
 5950  ls integer.s*
 5951  ls integer*
 5952  cd
 5953  cd git/hapifhir
 5954  ls
 5955  cd org.hl7.fhir.core
 5956  git pull
 5957  git stash
 5958  find . -name ShEx*.java
 5959  cd ./org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/conformance
 5960  ls
 5961  cd ..
 5962  ls
 5963  find . -name *json*
 5964  find . -iname *json*
 5965  cd elementmodel
 5966  ls
 5967  cd ..
 5968  ls
 5969  cd conformance
 5970  ls
 5971  vim ShExGenerator.java
 5972  cd
 5973  cd git/HL7/fhir/publish
 5974  ls account\.*
 5975  pwd
 5976  cd
 5977  cd git/hapifhir/org.hl7.fhir.core
 5978  ls
 5979  cd org.hl7/fhir.r5
 5980  cd org.hl7.fhir.r5
 5981  ls
 5982  cd src
 5983  ls
 5984  cd main
 5985  ls
 5986  cd java
 5987  ls
 5988  find . -name ShEx*
 5989  pwd
 5990  cd
 5991  cd git/FHIRCat
 5992  find . -name account.context*
 5993  cd ..
 5994  find . -name account.context*
 5995  cd
 5996  cd Development
 5997  ls
 5998  find . -name account.context*
 5999  find . -name Account.context*
 6000  cd
 6001  cd git/HL7/fhir/publish
 6002  vim account.shexc
 6003  vim account.shex
 6004  cd
 6005  cd git/FHIRCat/shex_to_shexj
 6006  ls
 6007  cd tests
 6008  ls
 6009  cd data_
 6010  cd data_out
 6011  ls
 6012  vim visionprescription.shexj
 6013  cd
 6014  cd git/HL7/fhir/publish
 6015  ls integer*
 6016  cd
 6017  cd Development
 6018  cd ../Downloads
 6019  mkdir fcs
 6020  cd fcs
 6021  git clone https://github.com/dnstone/fhir-context-server
 6022  docker build --help
 6023  docker build -t context_server .
 6024  cd fhir-context-server
 6025  docker build -t context_server .
 6026  docker run --help
 6027  docker run -p 55991:80 --volume "$(pwd)/files:/var/www/html" context_server
 6028  ls
 6029  cd files
 6030  ls
 6031  cd ..
 6032  docker run -p 55991:80 --volume "$(pwd)/files:/var/www/html" context_server
 6033  ls
 6034  ls host_nginx
 6035  cat host_nginx/sites-enabled
 6036  ls host_nginx/sites-enabled
 6037  ls host_nginx/sites-enabled/proxy_to_context_server
 6038  ls -l host_nginx/sites-enabled/proxy_to_context_server
 6039  cat host_nginx/sites-enabled/proxy_to_context_server
 6040  cd
 6041  cd git
 6042  ls
 6043  find . -name rdflib
 6044  cd hsolbrig/rdflib
 6045  grep -r guess *
 6046  cd
 6047  cd git/hapifhir
 6048  grep -r "xsd:dateTime" *
 6049  vim org.hl7.fhir.core/org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/elementmodel/TurtleParser.java
 6050  grep -r "xsd:dateTime" * | grep \.java
 6051  cd
 6052  cd git/biolinkml
 6053  cd git/biolink/biolinkml
 6054  find . -name local_*
 6055  cd
 6056  cd git/biolink/biolinkml
 6057  ls
 6058  git pull
 6059  git checkout Documentation
 6060  git branch
 6061  git checkout master
 6062  git pull
 6063  git checkout Documentation
 6064  git pull
 6065  git checkout Documentation
 6066  git add biolinkml/utils/* meta.yaml
 6067  git commit -m "Beginning documentation pass"
 6068  git push
 6069  cd
 6070  cd git/HL7/fhir/publish
 6071  vim datetime.shex
 6072  vim datetime.profile.shex
 6073  ls *.shex.zip
 6074  cd
 6075  cd git/hsolbrig/SNOMEDToOWL
 6076  ls
 6077  git pull
 6078  git branch
 6079  cd
 6080  cd git/hsolbrig/SNOMEDToOWL
 6081  find . -name '*.py' -exec sed -i '' '/^# Copyright/,/DAMAGE.$/d' {} \;
 6082  find . -name *.py
 6083  cd test
 6084  ls
 6085  cd data
 6086  ls
 6087  cd dicom
 6088  ls
 6089  less Dicom_Subset_20170131_v1_00.csv
 6090  cd
 6091  cd git/hsolbrig/data
 6092  ls
 6093  ln -s ~/data/terminology/snomedct/SnomedCT_InternationalRF2_PRODUCTION_20190731T120000Z/Snapshot
 6094  ls
 6095  mv Snapshot ~/git/hsolbrig/SNOMEDToOWL/test/data/dicom
 6096  cd
 6097  cd git/biolink/biolinkml
 6098  cd tests/test_base
 6099  ls
 6100  ./new_model.sh
 6101  cd
 6102  cd git/FHIRCat
 6103  ls
 6104  cd shex_to_shexj
 6105  ls
 6106  cd
 6107  cd venv
 6108  mkdir shex_to_shexj
 6109  cd shex_to_shexj
 6110  ls
 6111  pipenv install ~/git/FHIRCat/shex_to_shexj
 6112  pipenv shell
 6113  cd 
 6114  cd git/FHIRCat/shex_to_shexj
 6115  ls
 6116  cd source
 6117  ls
 6118  cd ..
 6119  ls
 6120  ls shex_to_shexj
 6121  pwd
 6122  diff shex_to_shexj/shex_to_shexj.py ~/git/FHIRCat/fhir_rdf_validator/fhir_rdf_validator/shex_to_shexj.py
 6123  cd
 6124  cd venv/shex_to_shexj
 6125  ls
 6126  cd
 6127  cd git/FHIRCat/fhir_rdf_validator
 6128  ls
 6129  pip install -e . --upgrade
 6130  ls
 6131  cd tutorial
 6132  rdftojson -h
 6133  rdftojson -i demo1.ttl -o demo1.json
 6134  rdftojson -i demo1.ttl -o demo1.json -sfx ttl
 6135  cd
 6136  cd git/FHIRCat
 6137  ls
 6138  cd fhir_rdf_validator
 6139  ls
 6140  pip install -e . --upgrade
 6141  convertrdf -?
 6142  convertrdf
 6143  convertrdf -h
 6144  cd tut
 6145  cd tutorial
 6146  ls
 6147  convertrdf -i demo2.json -o demo2.ttl
 6148  pip install -e . --upgrade
 6149  cd ..
 6150  pip install -e . --upgrade
 6151  cd tutorial
 6152  convertrdf -i demo2.json -o demo2.ttl
 6153  cd git/HL7/fhir
 6154  ls
 6155  cd ~git/HL7/fhir
 6156  cd
 6157  cd git
 6158  find . -name RDFGenerator.java
 6159  find . -name *Turtle*
 6160  cd HL7
 6161  cd fhir
 6162  cd publish
 6163  grep valueInteger *obs*.json
 6164  grep valueInteger *obs*.json | more
 6165  grep valueInteger *obs*example*.json | more
 6166  grep valueInteger *obs*.json | grep -v codesystem | more
 6167  grep valueInteger *obs*.json | grep -v codesystem | grep -v display | more
 6168  grep valueInteger *obs*.json | grep -v codesystem | grep -v display | grep -v devicem | more
 6169  grep valueInteger *obs*.json | grep -v codesystem | grep -v display | grep -v devicem | grep ^obser
 6170  grep valueInteger *obs*.json | grep -v codesystem | grep -v display | grep -v devicem | grep ^obser | more
 6171  grep valueBoolean *obs*.json | grep -v codesystem | grep -v display | grep -v devicem | grep ^obser | more
 6172  d ..
 6173  ls
 6174  cd
 6175  cd git/HL7/fhir
 6176  find . -name RDFTypeMap.java
 6177  cd
 6178  cd git/biolinkml
 6179  ls
 6180  cd
 6181  cd git/biolinkml
 6182  cd
 6183  cd ~/git/biolink/biolinkml
 6184  git status
 6185  cd ..
 6186  ls
 6187  cd biolinml
 6188  cd biolinkml
 6189  git pull
 6190  git stash
 6191  git status
 6192  cd tests/test_utils/output
 6193  ls
 6194  rm ifabsent_uri.py ifabsents.py ifabsents2.py ifabsents3.py uriandcurie.py
 6195  git status
 6196  cd ..
 6197  git fetch origin pull/98/head/issue_83_pq
 6198  git fetch origin pull/98/head:issue_83_pq
 6199  git status
 6200  git checkout issue_83_pq
 6201  pipenv lock
 6202  cd tests/test_biolink_model/target/golr
 6203  diff RNA_product-config.yaml ../../source/golr/RNA_product-config.yaml
 6204  pwd
 6205  diff RNA_product-config.yaml ../../source/golr/RNA_product-config.yaml
 6206  ls
 6207  pwd
 6208  ls
 6209  pwd
 6210  cd ../..
 6211  cd target
 6212  cd glor
 6213  ls
 6214  cd golr
 6215  ls
 6216  less RNA_product-config.yaml
 6217  pwd
 6218  cd ..
 6219  diff model.py ../source/model.py| more
 6220  cd ..
 6221  ls
 6222  cd ..
 6223  cp tests/target/mappings.jsonld includes/mappings.jsonld
 6224  cp tests/target/meta.jsonld meta.jsonld
 6225  cd tests/source/
 6226  rm meta_mappings.json
 6227  cd ../..
 6228  ls
 6229  cd tests/target
 6230  cp meta.ttl ../../meta.ttl
 6231  cp 
 6232  rm tests/test_scripts/output/genjsonld/meta.jsonld
 6233  cd ../..
 6234  rm tests/test_scripts/output/genjsonld/meta.jsonld
 6235  rm tests/test_scripts/output/genpython/*.py
 6236  cd tests
 6237  man grep
 6238  grep -rH solbrig *
 6239  git push origin issue_83_pq
 6240  ls
 6241  cd
 6242  cd git/HL7/fhir
 6243  ls
 6244  cd publish
 6245  grep "Extension" *.json | more
 6246  grep "Extension" *.json | more | grep -v canonical | more
 6247  grep "Extension" *.json | more | grep -v canonical | grep -v questionnaire | more
 6248  grep "Extension" *.json | more | grep -v canonical | grep -v questionnaire | grep -v profile | more
 6249  grep "Extension" *.json | more | grep -v canonical | grep -v questionnaire | grep -v profile | grep -v codesystem | grep -v dataelements
 6250  grep "Extension" *.json | more | grep -v canonical | grep -v questionnaire | grep -v profile | grep -v codesystem | grep -v dataelements | more
 6251  vim extension-allergyintolerance-certainty.json
 6252  grep "Extension" *.json | more | grep -v canonical | grep -v questionnaire | grep -v profile | grep -v codesystem | grep -v dataelements | grep patient | grep example | more
 6253  ls *extension(*
 6254  ls *extension*.json
 6255  grep "snomed.info/id" *.java
 6256  cd ..
 6257  grep -r "snomed.info/id" | grep \.java
 6258  grep -r "snomed.info/id" * | grep \.java
 6259  cd 
 6260  cd git/hapifhir
 6261  ls
 6262  cd org.hl7.fhir.core
 6263  git pull
 6264  find . -iname *rdf*
 6265  find . -iname *rdf*.java
 6266  cd ./org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/formats/R
 6267  cd ./org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/formats/
 6268  ls
 6269  grep snomed *
 6270  cd
 6271  cd git/HL7/fhir/publish
 6272  grep '"sct"' *.ttl
 6273  grep 'loinc" *.ttl
 6274  grep 'loinc' *.ttl
 6275  vim xds-example.ttl
 6276  grep "snomed.info" *.ttl
 6277  vim specimen-example.ttl
 6278  grep "@prefix" *.ttl
 6279  grep "@prefix" *.ttl > zz
 6280  vim zz
 6281  sort -u zz | more
 6282  vim zz
 6283  sort -u zz | more
 6284  vim zz
 6285  sort -u zz > zzs
 6286  vim zzs
 6287  pwd
 6288  cd ..
 6289  grep -r "|Patient|" * | grep \.java
 6290  cd publish
 6291  grep  "|Patient|" * 
 6292  grep  "|Patient|" *.html
 6293  cd ..
 6294  grep -r "|Patient|" publish
 6295  grep -r "|Patient|P" publish
 6296  grep -r regexp publish
 6297  clear
 6298  cd 
 6299  cd git/biolink/biolinkml
 6300  git fetch
 6301  git checkout issue_83
 6302  git checkout issue_83_pq
 6303  git status
 6304  git stash
 6305  git pull
 6306  git checkout issue_83
 6307  vim z
 6308  . z
 6309  ./z
 6310  chmod +x z
 6311  ./z
 6312  git status
 6313  rm z
 6314  git checkout issue_83
 6315  git pull
 6316  cat setup.py
 6317  cat setup.cfg
 6318  git tag
 6319  git tag v1.4.10
 6320  rm dist/*
 6321  git tag v1.4.10
 6322  python setup.py sdist bdist_wheel
 6323  ls dist
 6324  git status
 6325  cat ChangeLog
 6326  less ChangeLog
 6327  cat AUTHORS
 6328  ls
 6329  cat tox.ini
 6330  vim README.md
 6331  git status
 6332  rm dist/*
 6333  python setup.py sdist bdist_wheel
 6334  ls dist
 6335  git add README.md
 6336  python setup.py sdist bdist_wheel
 6337  git commit -m "tweak to get a dev version"
 6338  python setup.py sdist bdist_wheel
 6339  ls dist
 6340  cd dist
 6341  ls *10*
 6342  rm *10*
 6343  cd ..
 6344  twine upload dist/*
 6345  history
