.cookiecutter.yaml
.editorconfig
.gitignore
.gitmodules
.pre-commit-config.yaml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
Justfile
LICENSE
MANIFEST.in
README.md
pyproject.toml
.github/CODEOWNERS
.github/PULL_REQUEST_TEMPLATE.md
.github/dependabot.yml
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/ci.yml
bioio_czi/__init__.py
bioio_czi/bounding_box.py
bioio_czi/channels.py
bioio_czi/metadata.py
bioio_czi/pixel_sizes.py
bioio_czi/py.typed
bioio_czi/reader.py
bioio_czi/reader_metadata.py
bioio_czi.egg-info/PKG-INFO
bioio_czi.egg-info/SOURCES.txt
bioio_czi.egg-info/dependency_links.txt
bioio_czi.egg-info/entry_points.txt
bioio_czi.egg-info/not-zip-safe
bioio_czi.egg-info/requires.txt
bioio_czi.egg-info/top_level.txt
bioio_czi/aicspylibczi_reader/__init__.py
bioio_czi/aicspylibczi_reader/reader.py
bioio_czi/czi-to-ome-xslt/.editorconfig
bioio_czi/czi-to-ome-xslt/.gitignore
bioio_czi/czi-to-ome-xslt/LICENSE
bioio_czi/czi-to-ome-xslt/README.md
bioio_czi/czi-to-ome-xslt/.github/PULL_REQUEST_TEMPLATE.md
bioio_czi/czi-to-ome-xslt/.github/ISSUE_TEMPLATE/bug_report.md
bioio_czi/czi-to-ome-xslt/.github/ISSUE_TEMPLATE/feature_request.md
bioio_czi/czi-to-ome-xslt/.github/workflows/test-main.yml
bioio_czi/czi-to-ome-xslt/.github/workflows/test-pr.yml
bioio_czi/czi-to-ome-xslt/docs/CODE_OF_CONDUCT.md
bioio_czi/czi-to-ome-xslt/docs/CONTRIBUTING.md
bioio_czi/czi-to-ome-xslt/docs/comparison/bf-converted.xml
bioio_czi/czi-to-ome-xslt/docs/comparison/xslt-converted.xml
bioio_czi/czi-to-ome-xslt/ome/ome.xsd
bioio_czi/czi-to-ome-xslt/tests/python-requirements.txt
bioio_czi/czi-to-ome-xslt/tests/test_transform.py
bioio_czi/czi-to-ome-xslt/tests/resources/031816_Paxillin_2.czi.xml
bioio_czi/czi-to-ome-xslt/tests/resources/RBG-8bit.czi.xml
bioio_czi/czi-to-ome-xslt/tests/resources/README.md
bioio_czi/czi-to-ome-xslt/tests/resources/s_1_t_1_c_5_z_20.czi.xml
bioio_czi/czi-to-ome-xslt/tests/resources/s_1_t_1_c_5_z_20_with_subblocks.czi.xml
bioio_czi/czi-to-ome-xslt/tests/resources/s_3_t_1_c_3_z_5.czi.xml
bioio_czi/czi-to-ome-xslt/tests/resources/s_3_t_1_c_3_z_5_with_subblocks.czi.xml
bioio_czi/czi-to-ome-xslt/tests/resources/subblocks.czi.xml
bioio_czi/czi-to-ome-xslt/xslt/Channels.xsl
bioio_czi/czi-to-ome-xslt/xslt/CommonTypes.xsl
bioio_czi/czi-to-ome-xslt/xslt/Constants.xsl
bioio_czi/czi-to-ome-xslt/xslt/DocumentUser.xsl
bioio_czi/czi-to-ome-xslt/xslt/Image.xsl
bioio_czi/czi-to-ome-xslt/xslt/ImagingEnvironment.xsl
bioio_czi/czi-to-ome-xslt/xslt/Instrument.xsl
bioio_czi/czi-to-ome-xslt/xslt/ObjectiveSettings.xsl
bioio_czi/czi-to-ome-xslt/xslt/Pixels.xsl
bioio_czi/czi-to-ome-xslt/xslt/Plane.xsl
bioio_czi/czi-to-ome-xslt/xslt/Plate.xsl
bioio_czi/czi-to-ome-xslt/xslt/StructuredAnnotations.xsl
bioio_czi/czi-to-ome-xslt/xslt/czi-to-ome.xsl
bioio_czi/czi-to-ome-xslt/zisraw/CommonTypes.xsd
bioio_czi/czi-to-ome-xslt/zisraw/Dimensions.xsd
bioio_czi/czi-to-ome-xslt/zisraw/DisplaySetting.xsd
bioio_czi/czi-to-ome-xslt/zisraw/ImageAnalysisSetting.xsd
bioio_czi/czi-to-ome-xslt/zisraw/ImageMetadata.xsd
bioio_czi/czi-to-ome-xslt/zisraw/Information.xsd
bioio_czi/czi-to-ome-xslt/zisraw/Instrument.xsd
bioio_czi/czi-to-ome-xslt/zisraw/Layers.xsd
bioio_czi/czi-to-ome-xslt/zisraw/PhysiologySetting.xsd
bioio_czi/czi-to-ome-xslt/zisraw/Scaling.xsd
bioio_czi/czi-to-ome-xslt/zisraw/Timeline.xsd
bioio_czi/czi-to-ome-xslt/zisraw/Views.xsd
bioio_czi/pylibczirw_reader/__init__.py
bioio_czi/pylibczirw_reader/reader.py
bioio_czi/tests/__init__.py
bioio_czi/tests/conftest.py
bioio_czi/tests/test_aicspylibczi_reader.py
bioio_czi/tests/test_pylibczirw_reader.py
bioio_czi/tests/test_reader.py
scripts/TEST_RESOURCES_HASH.txt
scripts/download_test_resources.py
scripts/upload_test_resources.py