import os
import sys

sys.path.insert(0, os.path.abspath(os.path.dirname(__file__)))

from biofilter_modules.biofilter_class import Biofilter
from biofilter_modules.argparse_config import get_parser
from biofilter_modules.arg_utils import OrderedNamespace, cfDialect, parseCFile
from biofilter_modules.mixins import (  # noqa E402
    LokiDataRetrievalMixin,
    LoggerMixin,
    Schema,
    DatabaseManagementMixin,
    InputDataParsersMixin,
    SNPInputMixin,
    LocusPositionInputMixin,
    RegionInputMixin,
    GeneInputMixin,
    GroupInputMixin,
    SourceInputMixin,
    UserKnowledgeInputMixin,
    UserKnowledgeRetrievalMixin,
    ParisMixin,
    InternalQueryBuilderMixin,
    FilterAnnotModelMixin,
)

__all__ = [
    "Biofilter",
    "get_parser",
    "OrderedNamespace",
    "cfDialect",
    "parseCFile",
    "LokiDataRetrievalMixin",
    "LoggerMixin",
    "Schema",
    "DatabaseManagementMixin",
    "InputDataParsersMixin",
    "SNPInputMixin",
    "LocusPositionInputMixin",
    "RegionInputMixin",
    "GeneInputMixin",
    "GroupInputMixin",
    "SourceInputMixin",
    "UserKnowledgeInputMixin",
    "UserKnowledgeRetrievalMixin",
    "ParisMixin",
    "InternalQueryBuilderMixin",
    "FilterAnnotModelMixin",
]
