LICENSE
MANIFEST.in
NOTICE.md
README.md
pyproject.toml
src/bioemu/__init__.py
src/bioemu/chemgraph.py
src/bioemu/convert_chemgraph.py
src/bioemu/denoiser.py
src/bioemu/get_embeds.py
src/bioemu/md_utils.py
src/bioemu/models.py
src/bioemu/run_hpacker.py
src/bioemu/sample.py
src/bioemu/sde_lib.py
src/bioemu/seq_io.py
src/bioemu/shortcuts.py
src/bioemu/sidechain_relax.py
src/bioemu/so3_sde.py
src/bioemu/structure_module.py
src/bioemu/utils.py
src/bioemu.egg-info/PKG-INFO
src/bioemu.egg-info/SOURCES.txt
src/bioemu.egg-info/dependency_links.txt
src/bioemu.egg-info/requires.txt
src/bioemu.egg-info/top_level.txt
src/bioemu/colabfold_setup/__init__.py
src/bioemu/colabfold_setup/batch.patch
src/bioemu/colabfold_setup/modules.patch
src/bioemu/colabfold_setup/setup.sh
src/bioemu/config/denoiser/dpm.yaml
src/bioemu/config/denoiser/heun.yaml
src/bioemu/hpacker_setup/__init__.py
src/bioemu/hpacker_setup/setup_hpacker.py
src/bioemu/hpacker_setup/setup_sidechain_relax.sh
src/bioemu/openfold/np/protein.py
src/bioemu/openfold/np/residue_constants.py
src/bioemu/openfold/utils/rigid_utils.py
tests/test_convert_chemgraph.py
tests/test_denoiser.py
tests/test_embeds.py
tests/test_mdrelax.py
tests/test_models.py
tests/test_sample.py
tests/test_sde_lib.py
tests/test_seq_io.py
tests/test_so3_diffusion.py
tests/test_so3_utils.py
tests/test_utils.py