README
setup.cfg
setup.py
bin/vira
bioa/__init__.py
bioa.egg-info/PKG-INFO
bioa.egg-info/SOURCES.txt
bioa.egg-info/dependency_links.txt
bioa.egg-info/not-zip-safe
bioa.egg-info/requires.txt
bioa.egg-info/top_level.txt
bioa/algorithms/__init__.py
bioa/algorithms/mass_spec.py
bioa/algorithms/reconstruction.py
bioa/classes/__init__.py
bioa/classes/amplicons.py
bioa/classes/ampreadgraph.py
bioa/classes/dcampreadgraph.py
bioa/classes/frequency_matrix.py
bioa/classes/pqueue.py
bioa/classes/readbuckets.py
bioa/classes/readgraph.py
bioa/classes/splitampreadgraph.py
bioa/io/__init__.py
bioa/io/amplicon.py
bioa/io/readpairs.py
bioa/io/sam.py
bioa/util/__init__.py
bioa/util/general.py
bioa/util/graph.py
bioa/util/matrix.py
bioa/util/metric.c
bioa/util/metric.pyx
bioa/util/validation.py