LICENSE
README.md
setup.py
bio_shark.egg-info/PKG-INFO
bio_shark.egg-info/SOURCES.txt
bio_shark.egg-info/dependency_links.txt
bio_shark.egg-info/entry_points.txt
bio_shark.egg-info/requires.txt
bio_shark.egg-info/top_level.txt
src/VERSION
src/__init__.py
src/exceptions.py
src/settings.py
src/capture/__init__.py
src/capture/capture_utils.py
src/capture/compute.py
src/capture/finalize_sharkcapture.py
src/capture/logic.py
src/capture/plotting_functions.py
src/capture/sharkcapture_extended.py
src/capture/compute_slurm/__init__.py
src/capture/compute_slurm/gather.py
src/capture/compute_slurm/prepare.py
src/capture/compute_slurm/process.py
src/core/__init__.py
src/core/alf_scoring.py
src/core/sequence_pair_similarity.py
src/core/utils.py
src/data/SHARKdive_features_boxplot_stats_NGDinvert.pkl
src/data/dive_pred_model_v2.pkl
src/data/grantham.tsv
src/data/sample_fasta_file.fasta
src/data/substitution_matrix_grantham.tsv
src/dive/__init__.py
src/dive/calculate_kmer_scores.py
src/dive/prediction.py
src/dive/run.py
src/dive/visualize.py
src/dive/visualize_bk.py