README.md
setup.py
bio_embeddings_deepblast.egg-info/PKG-INFO
bio_embeddings_deepblast.egg-info/SOURCES.txt
bio_embeddings_deepblast.egg-info/dependency_links.txt
bio_embeddings_deepblast.egg-info/requires.txt
bio_embeddings_deepblast.egg-info/top_level.txt
deepblast/__init__.py
deepblast/alignment.py
deepblast/constants.py
deepblast/embedding.py
deepblast/language_model.py
deepblast/losses.py
deepblast/nw.py
deepblast/nw_cuda.py
deepblast/ops.py
deepblast/score.py
deepblast/sim.py
deepblast/trainer.py
deepblast/utils.py
deepblast/dataset/__init__.py
deepblast/dataset/alphabet.py
deepblast/dataset/dataset.py
deepblast/dataset/parse_fatcat.py
deepblast/dataset/parse_mali.py
deepblast/dataset/parse_tm_align.py
deepblast/dataset/tm_align.py
deepblast/dataset/utils.py
scripts/deepblast-evaluate
scripts/deepblast-search
scripts/deepblast-train
scripts/hmm-simulate