LICENSE
MANIFEST.in
README.md
setup.py
ARC/__init__.py
ARC/__main__.py
ARC/classifier.py
ARC/mhc_G_domain.py
ARC/data/MRO_Gdomain.csv
ARC/data/chain-sequence.tsv
ARC/data/HMM_archive/10_06_2019_HMMs/ALL.hmm
ARC/data/HMM_archive/10_06_2019_HMMs/ALL.hmm.h3f
ARC/data/HMM_archive/10_06_2019_HMMs/ALL.hmm.h3i
ARC/data/HMM_archive/10_06_2019_HMMs/ALL.hmm.h3m
ARC/data/HMM_archive/10_06_2019_HMMs/ALL.hmm.h3p
ARC/data/HMM_archive/10_06_2019_HMMs/ALL_AND_C.hmm
ARC/data/HMM_archive/10_06_2019_HMMs/ALL_AND_C.hmm.h3f
ARC/data/HMM_archive/10_06_2019_HMMs/ALL_AND_C.hmm.h3i
ARC/data/HMM_archive/10_06_2019_HMMs/ALL_AND_C.hmm.h3m
ARC/data/HMM_archive/10_06_2019_HMMs/ALL_AND_C.hmm.h3p
ARC/data/HMMs/ALL.hmm
ARC/data/HMMs/ALL.hmm.h3f
ARC/data/HMMs/ALL.hmm.h3i
ARC/data/HMMs/ALL.hmm.h3m
ARC/data/HMMs/ALL.hmm.h3p
ARC/data/HMMs/ALL_AND_C.hmm
ARC/data/HMMs/ALL_AND_C.hmm.h3f
ARC/data/HMMs/ALL_AND_C.hmm.h3i
ARC/data/HMMs/ALL_AND_C.hmm.h3m
ARC/data/HMMs/ALL_AND_C.hmm.h3p
ARC/data/IgNAR/IgNAR.phr
ARC/data/IgNAR/IgNAR.pin
ARC/data/IgNAR/IgNAR.psq
ARC/data/IgNAR/IgNAR_all_sources.fasta
ARC/data/IgNAR_source_data/IgNAR_all_sources.muscle
ARC/data/IgNAR_source_data/IgNAR_from_IEDB.fasta
ARC/data/IgNAR_source_data/IgNAR_from_NCBI.fasta
ARC/data/IgNAR_source_data/IgNAR_from_uniprot.fasta
ARC/data/IgNAR_source_data/IgNAR_from_uniprot_results.txt
ARC/data/IgNAR_source_data/IgNAR_from_uniprot_results.xml
ARC/data/IgNAR_source_data/IgNARs_PDB.csv
ARC/data/IgNAR_source_data/all_mhcBcrTcr_IEDB.fasta
ARC/data/IgNAR_source_data/all_mhc_bcrtcr_BLASTP_results.txt
ARC/data/MHC_HMMs/DTU_MHC_I_complete.hmm
ARC/data/MHC_HMMs/DTU_MHC_I_complete.hmm.h3f
ARC/data/MHC_HMMs/DTU_MHC_I_complete.hmm.h3i
ARC/data/MHC_HMMs/DTU_MHC_I_complete.hmm.h3m
ARC/data/MHC_HMMs/DTU_MHC_I_complete.hmm.h3p
ARC/data/MHC_HMMs/Pfam_MHC_I.hmm
ARC/data/MHC_HMMs/Pfam_MHC_I.hmm.h3f
ARC/data/MHC_HMMs/Pfam_MHC_I.hmm.h3i
ARC/data/MHC_HMMs/Pfam_MHC_I.hmm.h3m
ARC/data/MHC_HMMs/Pfam_MHC_I.hmm.h3p
ARC/data/MHC_HMMs/Pfam_MHC_II_alpha.hmm
ARC/data/MHC_HMMs/Pfam_MHC_II_alpha.hmm.h3f
ARC/data/MHC_HMMs/Pfam_MHC_II_alpha.hmm.h3i
ARC/data/MHC_HMMs/Pfam_MHC_II_alpha.hmm.h3m
ARC/data/MHC_HMMs/Pfam_MHC_II_alpha.hmm.h3p
ARC/data/MHC_HMMs/Pfam_MHC_II_beta.hmm
ARC/data/MHC_HMMs/Pfam_MHC_II_beta.hmm.h3f
ARC/data/MHC_HMMs/Pfam_MHC_II_beta.hmm.h3i
ARC/data/MHC_HMMs/Pfam_MHC_II_beta.hmm.h3m
ARC/data/MHC_HMMs/Pfam_MHC_II_beta.hmm.h3p
ARC/data/blastdb/G_ALPHA.fasta
ARC/data/blastdb/G_ALPHA.fasta.phr
ARC/data/blastdb/G_ALPHA.fasta.pin
ARC/data/blastdb/G_ALPHA.fasta.psq
ARC/data/blastdb/G_ALPHA1.fasta
ARC/data/blastdb/G_ALPHA1.fasta.phr
ARC/data/blastdb/G_ALPHA1.fasta.pin
ARC/data/blastdb/G_ALPHA1.fasta.psq
ARC/data/blastdb/G_ALPHA2.fasta
ARC/data/blastdb/G_ALPHA2.fasta.phr
ARC/data/blastdb/G_ALPHA2.fasta.pin
ARC/data/blastdb/G_ALPHA2.fasta.psq
ARC/data/blastdb/G_BETA.fasta
ARC/data/blastdb/G_BETA.fasta.phr
ARC/data/blastdb/G_BETA.fasta.pin
ARC/data/blastdb/G_BETA.fasta.psq
ARC/data/blastdb/IMGT_G_domain_Species.fasta
ARC/data/blastdb/IMGT_G_domain_Species.fasta.phr
ARC/data/blastdb/IMGT_G_domain_Species.fasta.pin
ARC/data/blastdb/IMGT_G_domain_Species.fasta.psq
ARC/data/blastdb/b2m.fasta
ARC/data/blastdb/b2m.fasta.phr
ARC/data/blastdb/b2m.fasta.pin
ARC/data/blastdb/b2m.fasta.psq
ARC/data/blastdb/test.out
ARC/data/blastdb/test_alpha.out
ARC/data/blastdb/test_alpha1.out
ARC/data/blastdb/test_alpha2.out
ARC/data/blastdb/test_beta.out
ARC/tests/__init__.py
ARC/tests/all_mhcBcrTcr_IEDB.fasta
ARC/tests/arc_test.py
ARC/tests/crosscheck_s_ids_names.fasta
ARC/tests/empty_test.fa
ARC/tests/igsuperfamily.fasta
bio_arc.egg-info/PKG-INFO
bio_arc.egg-info/SOURCES.txt
bio_arc.egg-info/dependency_links.txt
bio_arc.egg-info/requires.txt
bio_arc.egg-info/top_level.txt