.gitignore
.readthedocs.yaml
LICENSE
README.md
binette.yaml
pyproject.toml
.github/workflows/binette_ci.yml
.github/workflows/build_draft_pdf.yml
.github/workflows/check_conda_recipe.yml
.github/workflows/release.yml
Binette.egg-info/PKG-INFO
Binette.egg-info/SOURCES.txt
Binette.egg-info/dependency_links.txt
Binette.egg-info/entry_points.txt
Binette.egg-info/requires.txt
Binette.egg-info/top_level.txt
binette/__init__.py
binette/bin_manager.py
binette/bin_quality.py
binette/cds.py
binette/contig_manager.py
binette/diamond.py
binette/io_manager.py
binette/main.py
docs/Makefile
docs/conf.py
docs/contributing.md
docs/index.md
docs/installation.md
docs/make.bat
docs/usage.md
docs/api/api_ref.md
docs/api/binette.md
docs/api/modules.md
paper/binette_overview.pdf
paper/paper.bib
paper/paper.md
tests/__init__.py
tests/bin_manager_test.py
tests/bin_quality_test.py
tests/cds_test.py
tests/contig_manager_test.py
tests/contigs.fasta
tests/diamonds_test.py
tests/io_manager_test.py
tests/main_binette_test.py