LICENSE
MANIFEST.in
README.md
pyproject.toml
binchicken/__init__.py
binchicken/binchicken.py
binchicken.egg-info/PKG-INFO
binchicken.egg-info/SOURCES.txt
binchicken.egg-info/dependency_links.txt
binchicken.egg-info/entry_points.txt
binchicken.egg-info/requires.txt
binchicken.egg-info/top_level.txt
binchicken/config/template_coassemble.yaml
binchicken/config/template_evaluate.yaml
binchicken/workflow/coassemble.smk
binchicken/workflow/download.smk
binchicken/workflow/evaluate.smk
binchicken/workflow/env/aviary.yml
binchicken/workflow/env/coverm.yml
binchicken/workflow/env/fastp.yml
binchicken/workflow/env/kingfisher.yml
binchicken/workflow/env/prodigal.yml
binchicken/workflow/env/r.yml
binchicken/workflow/env/singlem.yml
binchicken/workflow/scripts/abundance_weighting.py
binchicken/workflow/scripts/aviary_commands.py
binchicken/workflow/scripts/cluster_graph.py
binchicken/workflow/scripts/collect_reference_bins.py
binchicken/workflow/scripts/evaluate.py
binchicken/workflow/scripts/is_interleaved.py
binchicken/workflow/scripts/no_genomes.py
binchicken/workflow/scripts/query_processing.py
binchicken/workflow/scripts/sketch_samples.py
binchicken/workflow/scripts/summarise_coassemblies.py
binchicken/workflow/scripts/target_elusive.py
binchicken/workflow/scripts/target_weighting.py
test/test_abundance_weighting.py
test/test_aviary_commands.py
test/test_build.py
test/test_cluster_graph.py
test/test_coassemble.py
test/test_collect_reference_bins.py
test/test_evaluate.py
test/test_evaluate_script.py
test/test_is_interleaved.py
test/test_iterate.py
test/test_manual.py
test/test_no_genomes.py
test/test_query_processing.py
test/test_single.py
test/test_sketch_samples.py
test/test_summarise_coassemblies.py
test/test_target_elusive.py
test/test_target_weighting.py
test/test_update.py