LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
src/genotypes.cpp
src/genotypes.h
src/header.cpp
src/header.h
src/reader.cpp
src/reader.h
src/samples.cpp
src/samples.h
src/utils.cpp
src/utils.h
src/variant.cpp
src/variant.h
src/writer.cpp
src/writer.h
src/bgen/__init__.py
src/bgen/index.py
src/bgen/reader.cpp
src/bgen/reader.pyx
src/bgen/writer.cpp
src/bgen/writer.pyx
src/bgen.egg-info/PKG-INFO
src/bgen.egg-info/SOURCES.txt
src/bgen.egg-info/dependency_links.txt
src/bgen.egg-info/requires.txt
src/bgen.egg-info/top_level.txt
src/zlib-ng/CMakeLists.txt
src/zlib-ng/Makefile.in
src/zlib-ng/adler32.c
src/zlib-ng/adler32_p.h
src/zlib-ng/arch_functions.h
src/zlib-ng/chunkset_tpl.h
src/zlib-ng/compare256_rle.h
src/zlib-ng/compress.c
src/zlib-ng/cpu_features.c
src/zlib-ng/cpu_features.h
src/zlib-ng/crc32.c
src/zlib-ng/crc32.h
src/zlib-ng/crc32_braid_comb.c
src/zlib-ng/crc32_braid_comb_p.h
src/zlib-ng/crc32_braid_p.h
src/zlib-ng/crc32_braid_tbl.h
src/zlib-ng/deflate.c
src/zlib-ng/deflate.h
src/zlib-ng/deflate_fast.c
src/zlib-ng/deflate_huff.c
src/zlib-ng/deflate_medium.c
src/zlib-ng/deflate_p.h
src/zlib-ng/deflate_quick.c
src/zlib-ng/deflate_rle.c
src/zlib-ng/deflate_slow.c
src/zlib-ng/deflate_stored.c
src/zlib-ng/fallback_builtins.h
src/zlib-ng/functable.c
src/zlib-ng/functable.h
src/zlib-ng/gzguts.h
src/zlib-ng/gzlib.c
src/zlib-ng/gzread.c.in
src/zlib-ng/gzwrite.c
src/zlib-ng/infback.c
src/zlib-ng/inffast_tpl.h
src/zlib-ng/inffixed_tbl.h
src/zlib-ng/inflate.c
src/zlib-ng/inflate.h
src/zlib-ng/inflate_p.h
src/zlib-ng/inftrees.c
src/zlib-ng/inftrees.h
src/zlib-ng/insert_string.c
src/zlib-ng/insert_string_roll.c
src/zlib-ng/insert_string_tpl.h
src/zlib-ng/match_tpl.h
src/zlib-ng/trees.c
src/zlib-ng/trees.h
src/zlib-ng/trees_emit.h
src/zlib-ng/trees_tbl.h
src/zlib-ng/uncompr.c
src/zlib-ng/zbuild.h
src/zlib-ng/zconf-ng.h.in
src/zlib-ng/zconf.h.in
src/zlib-ng/zendian.h
src/zlib-ng/zlib-config.cmake.in
src/zlib-ng/zlib-ng-config.cmake.in
src/zlib-ng/zlib-ng.h.in
src/zlib-ng/zlib.h.in
src/zlib-ng/zlib.pc.cmakein
src/zlib-ng/zlib.pc.in
src/zlib-ng/zlib_name_mangling-ng.h.in
src/zlib-ng/zlib_name_mangling.h.empty
src/zlib-ng/zlib_name_mangling.h.in
src/zlib-ng/zmemory.h
src/zlib-ng/zutil.c
src/zlib-ng/zutil.h
src/zlib-ng/zutil_p.h
src/zlib-ng/arch/arm/Makefile.in
src/zlib-ng/arch/arm/acle_intrins.h
src/zlib-ng/arch/arm/adler32_neon.c
src/zlib-ng/arch/arm/arm_features.c
src/zlib-ng/arch/arm/arm_features.h
src/zlib-ng/arch/arm/arm_functions.h
src/zlib-ng/arch/arm/chunkset_neon.c
src/zlib-ng/arch/arm/compare256_neon.c
src/zlib-ng/arch/arm/crc32_acle.c
src/zlib-ng/arch/arm/neon_intrins.h
src/zlib-ng/arch/arm/slide_hash_armv6.c
src/zlib-ng/arch/arm/slide_hash_neon.c
src/zlib-ng/arch/generic/Makefile.in
src/zlib-ng/arch/generic/adler32_c.c
src/zlib-ng/arch/generic/adler32_fold_c.c
src/zlib-ng/arch/generic/chunk_permute_table.h
src/zlib-ng/arch/generic/chunkset_c.c
src/zlib-ng/arch/generic/compare256_c.c
src/zlib-ng/arch/generic/compare256_p.h
src/zlib-ng/arch/generic/crc32_braid_c.c
src/zlib-ng/arch/generic/crc32_fold_c.c
src/zlib-ng/arch/generic/generic_functions.h
src/zlib-ng/arch/generic/slide_hash_c.c
src/zlib-ng/arch/power/Makefile.in
src/zlib-ng/arch/power/adler32_power8.c
src/zlib-ng/arch/power/adler32_vmx.c
src/zlib-ng/arch/power/chunkset_power8.c
src/zlib-ng/arch/power/compare256_power9.c
src/zlib-ng/arch/power/crc32_constants.h
src/zlib-ng/arch/power/crc32_power8.c
src/zlib-ng/arch/power/power_features.c
src/zlib-ng/arch/power/power_features.h
src/zlib-ng/arch/power/power_functions.h
src/zlib-ng/arch/power/power_intrins.h
src/zlib-ng/arch/power/slide_hash_power8.c
src/zlib-ng/arch/power/slide_hash_vmx.c
src/zlib-ng/arch/power/slide_ppc_tpl.h
src/zlib-ng/arch/riscv/adler32_rvv.c
src/zlib-ng/arch/riscv/chunkset_rvv.c
src/zlib-ng/arch/riscv/compare256_rvv.c
src/zlib-ng/arch/riscv/riscv_features.c
src/zlib-ng/arch/riscv/riscv_features.h
src/zlib-ng/arch/riscv/riscv_functions.h
src/zlib-ng/arch/riscv/slide_hash_rvv.c
src/zlib-ng/arch/s390/Makefile.in
src/zlib-ng/arch/s390/crc32-vx.c
src/zlib-ng/arch/s390/dfltcc_common.h
src/zlib-ng/arch/s390/dfltcc_deflate.c
src/zlib-ng/arch/s390/dfltcc_deflate.h
src/zlib-ng/arch/s390/dfltcc_detail.h
src/zlib-ng/arch/s390/dfltcc_inflate.c
src/zlib-ng/arch/s390/dfltcc_inflate.h
src/zlib-ng/arch/s390/s390_features.c
src/zlib-ng/arch/s390/s390_features.h
src/zlib-ng/arch/s390/s390_functions.h
src/zlib-ng/arch/x86/Makefile.in
src/zlib-ng/arch/x86/adler32_avx2.c
src/zlib-ng/arch/x86/adler32_avx2_p.h
src/zlib-ng/arch/x86/adler32_avx512.c
src/zlib-ng/arch/x86/adler32_avx512_p.h
src/zlib-ng/arch/x86/adler32_avx512_vnni.c
src/zlib-ng/arch/x86/adler32_sse42.c
src/zlib-ng/arch/x86/adler32_ssse3.c
src/zlib-ng/arch/x86/adler32_ssse3_p.h
src/zlib-ng/arch/x86/avx2_tables.h
src/zlib-ng/arch/x86/chunkset_avx2.c
src/zlib-ng/arch/x86/chunkset_avx512.c
src/zlib-ng/arch/x86/chunkset_sse2.c
src/zlib-ng/arch/x86/chunkset_ssse3.c
src/zlib-ng/arch/x86/compare256_avx2.c
src/zlib-ng/arch/x86/compare256_sse2.c
src/zlib-ng/arch/x86/crc32_fold_pclmulqdq_tpl.h
src/zlib-ng/arch/x86/crc32_fold_vpclmulqdq_tpl.h
src/zlib-ng/arch/x86/crc32_pclmulqdq.c
src/zlib-ng/arch/x86/crc32_pclmulqdq_tpl.h
src/zlib-ng/arch/x86/crc32_vpclmulqdq.c
src/zlib-ng/arch/x86/slide_hash_avx2.c
src/zlib-ng/arch/x86/slide_hash_sse2.c
src/zlib-ng/arch/x86/x86_features.c
src/zlib-ng/arch/x86/x86_features.h
src/zlib-ng/arch/x86/x86_functions.h
src/zlib-ng/arch/x86/x86_intrins.h
src/zlib-ng/cmake/detect-arch.c
src/zlib-ng/cmake/detect-arch.cmake
src/zlib-ng/cmake/detect-coverage.cmake
src/zlib-ng/cmake/detect-install-dirs.cmake
src/zlib-ng/cmake/detect-intrinsics.cmake
src/zlib-ng/cmake/detect-sanitizer.cmake
src/zlib-ng/cmake/fallback-macros.cmake
src/zlib-ng/cmake/toolchain-aarch64.cmake
src/zlib-ng/cmake/toolchain-arm.cmake
src/zlib-ng/cmake/toolchain-armhf.cmake
src/zlib-ng/cmake/toolchain-llvm-mingw-aarch64.cmake
src/zlib-ng/cmake/toolchain-llvm-mingw-armv7.cmake
src/zlib-ng/cmake/toolchain-llvm-mingw-i686.cmake
src/zlib-ng/cmake/toolchain-llvm-mingw-x86_64.cmake
src/zlib-ng/cmake/toolchain-mingw-i686.cmake
src/zlib-ng/cmake/toolchain-mingw-x86_64.cmake
src/zlib-ng/cmake/toolchain-mips.cmake
src/zlib-ng/cmake/toolchain-mips64.cmake
src/zlib-ng/cmake/toolchain-powerpc.cmake
src/zlib-ng/cmake/toolchain-powerpc64-clang.cmake
src/zlib-ng/cmake/toolchain-powerpc64-power9.cmake
src/zlib-ng/cmake/toolchain-powerpc64.cmake
src/zlib-ng/cmake/toolchain-powerpc64le-clang.cmake
src/zlib-ng/cmake/toolchain-powerpc64le-power9.cmake
src/zlib-ng/cmake/toolchain-powerpc64le.cmake
src/zlib-ng/cmake/toolchain-riscv.cmake
src/zlib-ng/cmake/toolchain-s390x.cmake
src/zlib-ng/cmake/toolchain-sparc64.cmake
src/zstd/lib/zstd.h
src/zstd/lib/common/bitstream.h
src/zstd/lib/common/compiler.h
src/zstd/lib/common/cpu.h
src/zstd/lib/common/debug.c
src/zstd/lib/common/debug.h
src/zstd/lib/common/entropy_common.c
src/zstd/lib/common/error_private.c
src/zstd/lib/common/error_private.h
src/zstd/lib/common/fse.h
src/zstd/lib/common/fse_decompress.c
src/zstd/lib/common/huf.h
src/zstd/lib/common/mem.h
src/zstd/lib/common/pool.c
src/zstd/lib/common/pool.h
src/zstd/lib/common/threading.c
src/zstd/lib/common/threading.h
src/zstd/lib/common/xxhash.c
src/zstd/lib/common/xxhash.h
src/zstd/lib/common/zstd_common.c
src/zstd/lib/common/zstd_errors.h
src/zstd/lib/common/zstd_internal.h
src/zstd/lib/compress/fse_compress.c
src/zstd/lib/compress/hist.c
src/zstd/lib/compress/hist.h
src/zstd/lib/compress/huf_compress.c
src/zstd/lib/compress/zstd_compress.c
src/zstd/lib/compress/zstd_compress_internal.h
src/zstd/lib/compress/zstd_compress_literals.c
src/zstd/lib/compress/zstd_compress_literals.h
src/zstd/lib/compress/zstd_compress_sequences.c
src/zstd/lib/compress/zstd_compress_sequences.h
src/zstd/lib/compress/zstd_cwksp.h
src/zstd/lib/compress/zstd_double_fast.c
src/zstd/lib/compress/zstd_double_fast.h
src/zstd/lib/compress/zstd_fast.c
src/zstd/lib/compress/zstd_fast.h
src/zstd/lib/compress/zstd_lazy.c
src/zstd/lib/compress/zstd_lazy.h
src/zstd/lib/compress/zstd_ldm.c
src/zstd/lib/compress/zstd_ldm.h
src/zstd/lib/compress/zstd_opt.c
src/zstd/lib/compress/zstd_opt.h
src/zstd/lib/compress/zstdmt_compress.c
src/zstd/lib/compress/zstdmt_compress.h
src/zstd/lib/decompress/huf_decompress.c
src/zstd/lib/decompress/zstd_ddict.c
src/zstd/lib/decompress/zstd_ddict.h
src/zstd/lib/decompress/zstd_decompress.c
src/zstd/lib/decompress/zstd_decompress_block.c
src/zstd/lib/decompress/zstd_decompress_block.h
src/zstd/lib/decompress/zstd_decompress_internal.h
src/zstd/lib/deprecated/zbuff.h
src/zstd/lib/deprecated/zbuff_common.c
src/zstd/lib/deprecated/zbuff_compress.c
src/zstd/lib/deprecated/zbuff_decompress.c
src/zstd/lib/dictBuilder/cover.c
src/zstd/lib/dictBuilder/cover.h
src/zstd/lib/dictBuilder/divsufsort.c
src/zstd/lib/dictBuilder/divsufsort.h
src/zstd/lib/dictBuilder/fastcover.c
src/zstd/lib/dictBuilder/zdict.c
src/zstd/lib/dictBuilder/zdict.h
src/zstd/lib/legacy/zstd_legacy.h
src/zstd/lib/legacy/zstd_v01.c
src/zstd/lib/legacy/zstd_v01.h
src/zstd/lib/legacy/zstd_v02.c
src/zstd/lib/legacy/zstd_v02.h
src/zstd/lib/legacy/zstd_v03.c
src/zstd/lib/legacy/zstd_v03.h
src/zstd/lib/legacy/zstd_v04.c
src/zstd/lib/legacy/zstd_v04.h
src/zstd/lib/legacy/zstd_v05.c
src/zstd/lib/legacy/zstd_v05.h
src/zstd/lib/legacy/zstd_v06.c
src/zstd/lib/legacy/zstd_v06.h
src/zstd/lib/legacy/zstd_v07.c
src/zstd/lib/legacy/zstd_v07.h
tests/test_alt_dosage_nonstandard.py
tests/test_bgen_streaming.py
tests/test_bgenfile.py
tests/test_bgenvar.py
tests/test_bgenwriter.py
tests/test_index.py
tests/test_load_example_files.py