LICENSE.txt
MANIFEST.in
README.md
runBESST
setup.py
BESST/Contig.py
BESST/CreateGraph.py
BESST/ExtendLargeScaffolds.py
BESST/GenerateOutput.py
BESST/MakeScaffolds.py
BESST/Parameter.py
BESST/Scaffold.py
BESST/__init__.py
BESST/diploid_main.py
BESST/errorhandle.py
BESST/haplotypes.py
BESST/libmetrics.py
BESST/main.py
BESST/order_contigs.py
BESST/pathgaps.py
BESST/plots.py
BESST/score.py
BESST/worker.py
BESST/workerprocess.py
BESST.egg-info/PKG-INFO
BESST.egg-info/SOURCES.txt
BESST.egg-info/dependency_links.txt
BESST.egg-info/requires.txt
BESST.egg-info/top_level.txt
BESST/diploid/__init__.py
BESST/diploid/get_haplotype_regions.py
BESST/diploid/output_contigs.py
BESST/diploid/remap_to_contigs.py
BESST/diploid/smith_waterman.py
BESST/diploid/wrapper_sw.py
BESST/statistics/__init__.py
docs/INSTALL.txt
docs/MANUAL.txt
scripts/reads_to_ctg_map.py