MANIFEST.in
README.md
pyproject.toml
setup.py
beret/__init__.py
beret/__init__tmp.py
beret/annotate/AminoAcidEdit.py
beret/annotate/__init__.py
beret/annotate/translate_allele.py
beret/framework/Edit.py
beret/framework/ReporterScreen.py
beret/framework/__init__.py
beret/framework/_supporting_fn.py
beret/framework/filter_alleles.py
beret/preprocessing/CRISPResso2Align.c
beret/preprocessing/CRISPResso2Align.pyx
beret/preprocessing/GuideEditCounter.py
beret/preprocessing/Step1_count_gRNA.py
beret/preprocessing/__init__.py
beret/preprocessing/_supporting_fn.py
beret/preprocessing/utils.py
beret/utils/__init__.py
beret/utils/arithmetric.py
beret_test/lib/python3.8/site-packages/numpy/__init__.cython-30.pxd
beret_test/lib/python3.8/site-packages/numpy/__init__.pxd
beret_test/lib/python3.8/site-packages/numpy/core/tests/examples/cython/checks.pyx
beret_test/lib/python3.8/site-packages/numpy/random/__init__.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_bounded_integers.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_common.pxd
beret_test/lib/python3.8/site-packages/numpy/random/bit_generator.pxd
beret_test/lib/python3.8/site-packages/numpy/random/c_distributions.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_examples/cython/extending.pyx
beret_test/lib/python3.8/site-packages/numpy/random/_examples/cython/extending_distributions.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/algos.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/algos.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/arrays.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/arrays.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/dtypes.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/groupby.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/hashing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/hashtable.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/hashtable.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/index.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/indexing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/internals.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/interval.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/join.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/khash.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/lib.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/lib.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/missing.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/missing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/ops.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/ops_dispatch.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/parsers.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/properties.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/reduction.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/reshape.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/sparse.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/testing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslib.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/util.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/writers.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/base.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/base.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/ccalendar.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/ccalendar.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/conversion.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/conversion.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/dtypes.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/dtypes.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/fields.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/nattype.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/nattype.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/np_datetime.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/np_datetime.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/offsets.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/offsets.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/period.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/period.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/strptime.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timedeltas.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timedeltas.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timestamps.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timestamps.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timezones.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timezones.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/tzconversion.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/tzconversion.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/util.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/vectorized.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/window/aggregations.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/window/indexers.pyx
beret_test/lib/python3.8/site-packages/pandas/io/sas/sas.pyx
beret_test/lib/python3.8/site-packages/scipy/linalg.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize.pxd
beret_test/lib/python3.8/site-packages/scipy/special.pxd
beret_test/lib/python3.8/site-packages/scipy/linalg/cython_blas.pxd
beret_test/lib/python3.8/site-packages/scipy/linalg/cython_lapack.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HConst.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/Highs.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsIO.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsInfo.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsLp.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsLpUtils.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsModelUtils.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsOptions.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsRuntimeOptions.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsStatus.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/SimplexConst.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/highs_c_api.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize/_zeros.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize/c_zeros.pxd
beret_test/lib/python3.8/site-packages/scipy/special/cython_special.pxd
beret_test/lib/python3.8/site-packages/scipy/stats/_biasedurn.pxd
beret_test/lib/python3.8/site-packages/scipy/stats/_unuran/unuran.pxd
berets.egg-info/PKG-INFO
berets.egg-info/SOURCES.txt
berets.egg-info/dependency_links.txt
berets.egg-info/requires.txt
berets.egg-info/top_level.txt
bin/beret-count
bin/beret-count-samples