{% extends "base.html" %}

{% import "bootstrap/wtf.html" as wtf %}
{% import "bootstrap/fixes.html" as fixes %}
{% import "bootstrap/utils.html" as util %}

{% block title %}Download Format Help{% endblock %}

{% block content %}
    <div class="container">

        <ol class="breadcrumb">
            <li><a href="{{ url_for('help.index') }}">Help</a></li>
            <li class="active">Download Formats</li>
        </ol>

        <div class="page-header">
            <h1>Download Formats Help</h1>
        </div>

        <div class="panel panel-default">
            <div class="panel-heading">
                <h3 class="panel-title">Download Format Help</h3>
            </div>
            <table class="table table-responsive">
                <thead>
                <tr>
                    <th>Extension</th>
                    <th>Label</th>
                    <th>Format</th>
                    <th>Description</th>
                </tr>
                </thead>
                <tbody>
                <tr>
                    <td>.png</td>
                    <td>PNG</td>
                    <td>Portable Network Graphics</td>
                    <td>For use in Powerpoint presentations</td>
                </tr>

                <tr>
                    <td>.bel</td>
                    <td>BEL</td>
                    <td>Biological Expression Language script</td>
                    <td>For exchange to other BEL-aware software. Outputs upgraded/canonicalized BEL 2.0 Script.</td>
                </tr>
                <tr>
                    <td>.graphml</td>
                    <td>GraphML</td>
                    <td><a href="http://graphml.graphdrawing.org/">GraphML</a></td>
                    <td>For <a href="http://www.cytoscape.org/">Cytoscape</a></td>
                </tr>
                <tr>
                    <td>.csv</td>
                    <td>CSV</td>
                    <td>Comma Separated Values</td>
                    <td>For use in Microsoft Excel, Cytoscape, or other explorers that accept simple formats</td>
                </tr>
                <tr>
                    <td>.sif</td>
                    <td>SIF</td>
                    <td>Simple Interaction Format</td>
                    <td>For use in Microsoft Excel, Cytoscape, or other explorers that accept simple formats</td>
                </tr>
                <tr>
                    <td>.cx</td>
                    <td>CX JSON</td>
                    <td><a href="http://www.home.ndexbio.org/data-model/">Cytoscape CyberInfrastructure Exchange</a>
                    </td>
                    <td>
                        For upload and sharing with the <a href="http://ndexbio.org/">Network Data Exchange (NDEx)</a>
                    </td>
                </tr>
                <tr>
                    <td>.json</td>
                    <td>Node-Link JSON</td>
                    <td>Node-Link JSON</td>
                    <td>For custom visualization using <a href="https://d3js.org/">D3.js</a></td>
                </tr>
                <tr>
                    <td>.gpickle</td>
                    <td>Pickle</td>
                    <td><a href="https://docs.python.org/3/library/pickle.html">Python Pickle</a></td>
                    <td>For programmatic use with <a href="https://github.com/pybel/pybel">PyBEL</a></td>
                </tr>

                <tr>
                    <td>.grp</td>
                    <td>GRP</td>
                    <td><a
                            href="https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats#GRP:_Gene_set_file_format_.28.2A.grp.29">Gene
                        Set File Format</a></td>
                    <td>For use in the Broad Institute <a href="http://software.broadinstitute.org/gsea/index.jsp">Gene
                        Set Enrichment Analysis (GSEA)</a> software
                    </td>
                </tr>
                <tr>
                    <td>.txt</td>
                    <td>Citation</td>
                    <td>Citation List</td>
                    <td>Exports list of PubMed identifiers in a text file</td>
                </tr>
                </tbody>
            </table>
        </div>
    </div>

    {% include "footer.html" %}
{% endblock %}
