Metadata-Version: 2.1
Name: bdi-kit
Version: 0.1.0
Summary: bdi-kit library
Home-page: https://github.com/VIDA-NYU/bdi-kit
Author: 
Author-email: 
Maintainer: 
Maintainer-email: 
License: Apache-2.0
Keywords: askem,data integration,nyu
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Topic :: Scientific/Engineering
Description-Content-Type: text/markdown
License-File: LICENSE.txt

[![PyPI version](https://badge.fury.io/py/bdi-kit.svg)](https://pypi.org/project/bdi-kit)
[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)

# bdi-kit 
This project aims to assist users in performing data integration on biomedical data. It provides tools to streamline the process of integrating disparate biomedical datasets.


## Installation

You can install the latest stable version of this library from [PyPI](https://pypi.org/project/bdi-kit/):

```
pip install bdi-kit
```

To install the latest development version:

```
pip install git+https://github.com/VIDA-NYU/bdi-kit@devel
```

Download the pre-trained model for mapping recommendations from [here](https://drive.google.com/file/d/1YdCTd-kUMjDJaltQwXN4X9ezTCsfjyft/view) (we show how to use it in our examples).


## Documentation
See our examples [here](https://github.com/VIDA-NYU/bdi-kit/tree/devel/examples).


## Folder Structure

- **/data_ingestion**:
  - Contains scripts and tools for ingesting data into the system.

- **/mapping_algorithms**:
  - Algorithms and utilities for schema and value mapping.

- **/mapping_recommendation**:
  - Interacts with mapping_algorithms and users to suggest mappings for data integration. The output is a mapping plan.

- **/transformation**:
  - Transforms the data given a mapping plan.

- **/visualization**:
  - Visualizations to aid in the mapping recommendation process.


