LICENSE
MANIFEST.in
README.md
custom_build.py
pyproject.toml
bbmapy/__init__.py
bbmapy/_version.py
bbmapy/base.py
bbmapy/commands.py
bbmapy/ex.py
bbmapy/scanner.py
bbmapy.egg-info/PKG-INFO
bbmapy.egg-info/SOURCES.txt
bbmapy.egg-info/dependency_links.txt
bbmapy.egg-info/requires.txt
bbmapy.egg-info/top_level.txt
bbmapy/vendor/bbtools.tar.gz
bbmapy/vendor/bbmap/.gitignore
bbmapy/vendor/bbmap/README.md
bbmapy/vendor/bbmap/Xcalcmem.sh
bbmapy/vendor/bbmap/a_sample_mt.sh
bbmapy/vendor/bbmap/addadapters.sh
bbmapy/vendor/bbmap/addssu.sh
bbmapy/vendor/bbmap/adjusthomopolymers.sh
bbmapy/vendor/bbmap/alltoall.sh
bbmapy/vendor/bbmap/analyzeaccession.sh
bbmapy/vendor/bbmap/analyzegenes.sh
bbmapy/vendor/bbmap/analyzesketchresults.sh
bbmapy/vendor/bbmap/applyvariants.sh
bbmapy/vendor/bbmap/bbcms.sh
bbmapy/vendor/bbmap/bbcountunique.sh
bbmapy/vendor/bbmap/bbcrisprfinder.sh
bbmapy/vendor/bbmap/bbduk.sh
bbmapy/vendor/bbmap/bbest.sh
bbmapy/vendor/bbmap/bbfakereads.sh
bbmapy/vendor/bbmap/bbmap.sh
bbmapy/vendor/bbmap/bbmapskimmer.sh
bbmapy/vendor/bbmap/bbmask.sh
bbmapy/vendor/bbmap/bbmerge-auto.sh
bbmapy/vendor/bbmap/bbmerge.sh
bbmapy/vendor/bbmap/bbnorm.sh
bbmapy/vendor/bbmap/bbrealign.sh
bbmapy/vendor/bbmap/bbrename.sh
bbmapy/vendor/bbmap/bbsketch.sh
bbmapy/vendor/bbmap/bbsort.sh
bbmapy/vendor/bbmap/bbsplit.sh
bbmapy/vendor/bbmap/bbsplitpairs.sh
bbmapy/vendor/bbmap/bbstats.sh
bbmapy/vendor/bbmap/bbversion.sh
bbmapy/vendor/bbmap/bbwrap.sh
bbmapy/vendor/bbmap/bitbucket-pipelines.yml
bbmapy/vendor/bbmap/bloomfilter.sh
bbmapy/vendor/bbmap/bloomfilterparser.sh
bbmapy/vendor/bbmap/calcmem.sh
bbmapy/vendor/bbmap/calctruequality.sh
bbmapy/vendor/bbmap/callgenes.sh
bbmapy/vendor/bbmap/callpeaks.sh
bbmapy/vendor/bbmap/callvariants.sh
bbmapy/vendor/bbmap/callvariants2.sh
bbmapy/vendor/bbmap/cg2illumina.sh
bbmapy/vendor/bbmap/checkstrand.sh
bbmapy/vendor/bbmap/clumpify.sh
bbmapy/vendor/bbmap/commonkmers.sh
bbmapy/vendor/bbmap/comparegff.sh
bbmapy/vendor/bbmap/comparelabels.sh
bbmapy/vendor/bbmap/comparesketch.sh
bbmapy/vendor/bbmap/comparessu.sh
bbmapy/vendor/bbmap/comparevcf.sh
bbmapy/vendor/bbmap/consect.sh
bbmapy/vendor/bbmap/consensus.sh
bbmapy/vendor/bbmap/copyfile.sh
bbmapy/vendor/bbmap/countbarcodes.sh
bbmapy/vendor/bbmap/countbarcodes2.sh
bbmapy/vendor/bbmap/countduplicates.sh
bbmapy/vendor/bbmap/countgc.sh
bbmapy/vendor/bbmap/countsharedlines.sh
bbmapy/vendor/bbmap/crossblock.sh
bbmapy/vendor/bbmap/crosscontaminate.sh
bbmapy/vendor/bbmap/cutgff.sh
bbmapy/vendor/bbmap/cutprimers.sh
bbmapy/vendor/bbmap/decontaminate.sh
bbmapy/vendor/bbmap/dedupe.sh
bbmapy/vendor/bbmap/dedupe2.sh
bbmapy/vendor/bbmap/dedupebymapping.sh
bbmapy/vendor/bbmap/demuxbyname.sh
bbmapy/vendor/bbmap/demuxserver.sh
bbmapy/vendor/bbmap/diskbench.sh
bbmapy/vendor/bbmap/estherfilter.sh
bbmapy/vendor/bbmap/explodetree.sh
bbmapy/vendor/bbmap/fetchproks.sh
bbmapy/vendor/bbmap/filterassemblysummary.sh
bbmapy/vendor/bbmap/filterbarcodes.sh
bbmapy/vendor/bbmap/filterbycoverage.sh
bbmapy/vendor/bbmap/filterbyname.sh
bbmapy/vendor/bbmap/filterbysequence.sh
bbmapy/vendor/bbmap/filterbytaxa.sh
bbmapy/vendor/bbmap/filterbytile.sh
bbmapy/vendor/bbmap/filterlines.sh
bbmapy/vendor/bbmap/filterqc.sh
bbmapy/vendor/bbmap/filtersam.sh
bbmapy/vendor/bbmap/filtersilva.sh
bbmapy/vendor/bbmap/filtersubs.sh
bbmapy/vendor/bbmap/filtervcf.sh
bbmapy/vendor/bbmap/findrepeats.sh
bbmapy/vendor/bbmap/fixgaps.sh
bbmapy/vendor/bbmap/fungalrelease.sh
bbmapy/vendor/bbmap/fuse.sh
bbmapy/vendor/bbmap/gbff2gff.sh
bbmapy/vendor/bbmap/getreads.sh
bbmapy/vendor/bbmap/gi2ancestors.sh
bbmapy/vendor/bbmap/gi2taxid.sh
bbmapy/vendor/bbmap/gitable.sh
bbmapy/vendor/bbmap/grademerge.sh
bbmapy/vendor/bbmap/gradesam.sh
bbmapy/vendor/bbmap/icecreamfinder.sh
bbmapy/vendor/bbmap/icecreamgrader.sh
bbmapy/vendor/bbmap/icecreammaker.sh
bbmapy/vendor/bbmap/idmatrix.sh
bbmapy/vendor/bbmap/idtree.sh
bbmapy/vendor/bbmap/invertkey.sh
bbmapy/vendor/bbmap/kapastats.sh
bbmapy/vendor/bbmap/kcompress.sh
bbmapy/vendor/bbmap/keepbestcopy.sh
bbmapy/vendor/bbmap/khist.sh
bbmapy/vendor/bbmap/kmercountexact.sh
bbmapy/vendor/bbmap/kmercountmulti.sh
bbmapy/vendor/bbmap/kmercoverage.sh
bbmapy/vendor/bbmap/kmerfilterset.sh
bbmapy/vendor/bbmap/kmerlimit.sh
bbmapy/vendor/bbmap/kmerlimit2.sh
bbmapy/vendor/bbmap/kmerposition.sh
bbmapy/vendor/bbmap/kmutate.sh
bbmapy/vendor/bbmap/license.txt
bbmapy/vendor/bbmap/lilypad.sh
bbmapy/vendor/bbmap/loadreads.sh
bbmapy/vendor/bbmap/loglog.sh
bbmapy/vendor/bbmap/makechimeras.sh
bbmapy/vendor/bbmap/makecontaminatedgenomes.sh
bbmapy/vendor/bbmap/makepolymers.sh
bbmapy/vendor/bbmap/mapPacBio.sh
bbmapy/vendor/bbmap/matrixtocolumns.sh
bbmapy/vendor/bbmap/mergeOTUs.sh
bbmapy/vendor/bbmap/mergebarcodes.sh
bbmapy/vendor/bbmap/mergepgm.sh
bbmapy/vendor/bbmap/mergeribo.sh
bbmapy/vendor/bbmap/mergesam.sh
bbmapy/vendor/bbmap/mergesketch.sh
bbmapy/vendor/bbmap/mergesorted.sh
bbmapy/vendor/bbmap/msa.sh
bbmapy/vendor/bbmap/mutate.sh
bbmapy/vendor/bbmap/muxbyname.sh
bbmapy/vendor/bbmap/netfilter.sh
bbmapy/vendor/bbmap/novademux.sh
bbmapy/vendor/bbmap/partition.sh
bbmapy/vendor/bbmap/phylip2fasta.sh
bbmapy/vendor/bbmap/pileup.sh
bbmapy/vendor/bbmap/pileup2.sh
bbmapy/vendor/bbmap/plotflowcell.sh
bbmapy/vendor/bbmap/plotgc.sh
bbmapy/vendor/bbmap/plotreadposition.sh
bbmapy/vendor/bbmap/postfilter.sh
bbmapy/vendor/bbmap/printtime.sh
bbmapy/vendor/bbmap/processfrag.sh
bbmapy/vendor/bbmap/processhi-c.sh
bbmapy/vendor/bbmap/processspeed.sh
bbmapy/vendor/bbmap/randomgenome.sh
bbmapy/vendor/bbmap/randomreads.sh
bbmapy/vendor/bbmap/readlength.sh
bbmapy/vendor/bbmap/readqc.sh
bbmapy/vendor/bbmap/reducesilva.sh
bbmapy/vendor/bbmap/reformat.sh
bbmapy/vendor/bbmap/reformatpb.sh
bbmapy/vendor/bbmap/removebadbarcodes.sh
bbmapy/vendor/bbmap/removecatdogmousehuman.sh
bbmapy/vendor/bbmap/removehuman.sh
bbmapy/vendor/bbmap/removehuman2.sh
bbmapy/vendor/bbmap/removemicrobes.sh
bbmapy/vendor/bbmap/removesmartbell.sh
bbmapy/vendor/bbmap/rename.sh
bbmapy/vendor/bbmap/renameimg.sh
bbmapy/vendor/bbmap/repair.sh
bbmapy/vendor/bbmap/replaceheaders.sh
bbmapy/vendor/bbmap/representative.sh
bbmapy/vendor/bbmap/rqcfilter.sh
bbmapy/vendor/bbmap/rqcfilter2.sh
bbmapy/vendor/bbmap/runhmm.sh
bbmapy/vendor/bbmap/samtoroc.sh
bbmapy/vendor/bbmap/scoresequence.sh
bbmapy/vendor/bbmap/seal.sh
bbmapy/vendor/bbmap/sendsketch.sh
bbmapy/vendor/bbmap/seqtovec.sh
bbmapy/vendor/bbmap/shred.sh
bbmapy/vendor/bbmap/shrinkaccession.sh
bbmapy/vendor/bbmap/shuffle.sh
bbmapy/vendor/bbmap/shuffle2.sh
bbmapy/vendor/bbmap/sketch.sh
bbmapy/vendor/bbmap/sketchblacklist.sh
bbmapy/vendor/bbmap/sketchblacklist2.sh
bbmapy/vendor/bbmap/sortbyname.sh
bbmapy/vendor/bbmap/splitbytaxa.sh
bbmapy/vendor/bbmap/splitnextera.sh
bbmapy/vendor/bbmap/splitribo.sh
bbmapy/vendor/bbmap/splitsam.sh
bbmapy/vendor/bbmap/splitsam4way.sh
bbmapy/vendor/bbmap/splitsam6way.sh
bbmapy/vendor/bbmap/stats.sh
bbmapy/vendor/bbmap/statswrapper.sh
bbmapy/vendor/bbmap/streamsam.sh
bbmapy/vendor/bbmap/subsketch.sh
bbmapy/vendor/bbmap/summarizecontam.sh
bbmapy/vendor/bbmap/summarizecoverage.sh
bbmapy/vendor/bbmap/summarizecrossblock.sh
bbmapy/vendor/bbmap/summarizemerge.sh
bbmapy/vendor/bbmap/summarizequast.sh
bbmapy/vendor/bbmap/summarizescafstats.sh
bbmapy/vendor/bbmap/summarizeseal.sh
bbmapy/vendor/bbmap/summarizesketch.sh
bbmapy/vendor/bbmap/synthmda.sh
bbmapy/vendor/bbmap/tadpipe.sh
bbmapy/vendor/bbmap/tadpole.sh
bbmapy/vendor/bbmap/tadwrapper.sh
bbmapy/vendor/bbmap/tagandmerge.sh
bbmapy/vendor/bbmap/taxonomy.sh
bbmapy/vendor/bbmap/taxserver.sh
bbmapy/vendor/bbmap/taxsize.sh
bbmapy/vendor/bbmap/taxtree.sh
bbmapy/vendor/bbmap/testfilesystem.sh
bbmapy/vendor/bbmap/testformat.sh
bbmapy/vendor/bbmap/testformat2.sh
bbmapy/vendor/bbmap/tetramerfreq.sh
bbmapy/vendor/bbmap/textfile.sh
bbmapy/vendor/bbmap/train.sh
bbmapy/vendor/bbmap/translate6frames.sh
bbmapy/vendor/bbmap/unicode2ascii.sh
bbmapy/vendor/bbmap/unzip.sh
bbmapy/vendor/bbmap/vcf2gff.sh
bbmapy/vendor/bbmap/webcheck.sh
bbmapy/vendor/bbmap/config/cluster16s.txt
bbmapy/vendor/bbmap/config/filter16s.txt
bbmapy/vendor/bbmap/config/histograms.txt
bbmapy/vendor/bbmap/config/recalibrate.txt
bbmapy/vendor/bbmap/config/rnaseq.txt
bbmapy/vendor/bbmap/config/trimadapters.txt
bbmapy/vendor/bbmap/current/align2/AbstractIndex.class
bbmapy/vendor/bbmap/current/align2/AbstractIndex.java
bbmapy/vendor/bbmap/current/align2/AbstractMapThread.class
bbmapy/vendor/bbmap/current/align2/AbstractMapThread.java
bbmapy/vendor/bbmap/current/align2/AbstractMapper.class
bbmapy/vendor/bbmap/current/align2/AbstractMapper.java
bbmapy/vendor/bbmap/current/align2/BBIndex.class
bbmapy/vendor/bbmap/current/align2/BBIndex.java
bbmapy/vendor/bbmap/current/align2/BBIndex5.class
bbmapy/vendor/bbmap/current/align2/BBIndex5.java
bbmapy/vendor/bbmap/current/align2/BBIndexAcc.class
bbmapy/vendor/bbmap/current/align2/BBIndexAcc.java
bbmapy/vendor/bbmap/current/align2/BBIndexPacBio.class
bbmapy/vendor/bbmap/current/align2/BBIndexPacBio.java
bbmapy/vendor/bbmap/current/align2/BBIndexPacBioSkimmer.class
bbmapy/vendor/bbmap/current/align2/BBIndexPacBioSkimmer.java
bbmapy/vendor/bbmap/current/align2/BBMap.class
bbmapy/vendor/bbmap/current/align2/BBMap.java
bbmapy/vendor/bbmap/current/align2/BBMap5.class
bbmapy/vendor/bbmap/current/align2/BBMap5.java
bbmapy/vendor/bbmap/current/align2/BBMapAcc.class
bbmapy/vendor/bbmap/current/align2/BBMapAcc.java
bbmapy/vendor/bbmap/current/align2/BBMapPacBio.class
bbmapy/vendor/bbmap/current/align2/BBMapPacBio.java
bbmapy/vendor/bbmap/current/align2/BBMapPacBioSkimmer.class
bbmapy/vendor/bbmap/current/align2/BBMapPacBioSkimmer.java
bbmapy/vendor/bbmap/current/align2/BBMapThread$1.class
bbmapy/vendor/bbmap/current/align2/BBMapThread.class
bbmapy/vendor/bbmap/current/align2/BBMapThread.java
bbmapy/vendor/bbmap/current/align2/BBMapThread5$1.class
bbmapy/vendor/bbmap/current/align2/BBMapThread5.class
bbmapy/vendor/bbmap/current/align2/BBMapThread5.java
bbmapy/vendor/bbmap/current/align2/BBMapThreadAcc$1.class
bbmapy/vendor/bbmap/current/align2/BBMapThreadAcc.class
bbmapy/vendor/bbmap/current/align2/BBMapThreadAcc.java
bbmapy/vendor/bbmap/current/align2/BBMapThreadPacBio$1.class
bbmapy/vendor/bbmap/current/align2/BBMapThreadPacBio.class
bbmapy/vendor/bbmap/current/align2/BBMapThreadPacBio.java
bbmapy/vendor/bbmap/current/align2/BBMapThreadPacBioSkimmer.class
bbmapy/vendor/bbmap/current/align2/BBMapThreadPacBioSkimmer.java
bbmapy/vendor/bbmap/current/align2/BBSplitter$1.class
bbmapy/vendor/bbmap/current/align2/BBSplitter$SetCount.class
bbmapy/vendor/bbmap/current/align2/BBSplitter.class
bbmapy/vendor/bbmap/current/align2/BBSplitter.java
bbmapy/vendor/bbmap/current/align2/BBWrap.class
bbmapy/vendor/bbmap/current/align2/BBWrap.java
bbmapy/vendor/bbmap/current/align2/BandedAligner.class
bbmapy/vendor/bbmap/current/align2/BandedAligner.java
bbmapy/vendor/bbmap/current/align2/BandedAlignerConcrete.class
bbmapy/vendor/bbmap/current/align2/BandedAlignerConcrete.java
bbmapy/vendor/bbmap/current/align2/BandedAlignerJNI.class
bbmapy/vendor/bbmap/current/align2/BandedAlignerJNI.java
bbmapy/vendor/bbmap/current/align2/Blacklist.class
bbmapy/vendor/bbmap/current/align2/Blacklist.java
bbmapy/vendor/bbmap/current/align2/Block.class
bbmapy/vendor/bbmap/current/align2/Block.java
bbmapy/vendor/bbmap/current/align2/ChromLoadThread.class
bbmapy/vendor/bbmap/current/align2/ChromLoadThread.java
bbmapy/vendor/bbmap/current/align2/CompareSamFiles$1.class
bbmapy/vendor/bbmap/current/align2/CompareSamFiles.class
bbmapy/vendor/bbmap/current/align2/CompareSamFiles.java
bbmapy/vendor/bbmap/current/align2/CompressString.class
bbmapy/vendor/bbmap/current/align2/CompressString.java
bbmapy/vendor/bbmap/current/align2/GapTools$Range.class
bbmapy/vendor/bbmap/current/align2/GapTools.class
bbmapy/vendor/bbmap/current/align2/GapTools.java
bbmapy/vendor/bbmap/current/align2/GradeSamFile$1.class
bbmapy/vendor/bbmap/current/align2/GradeSamFile.class
bbmapy/vendor/bbmap/current/align2/GradeSamFile.java
bbmapy/vendor/bbmap/current/align2/Index.class
bbmapy/vendor/bbmap/current/align2/Index.java
bbmapy/vendor/bbmap/current/align2/IndexMaker4$BlockMaker$CountThread.class
bbmapy/vendor/bbmap/current/align2/IndexMaker4$BlockMaker.class
bbmapy/vendor/bbmap/current/align2/IndexMaker4.class
bbmapy/vendor/bbmap/current/align2/IndexMaker4.java
bbmapy/vendor/bbmap/current/align2/IndexMaker5$BlockMaker$CountThread.class
bbmapy/vendor/bbmap/current/align2/IndexMaker5$BlockMaker.class
bbmapy/vendor/bbmap/current/align2/IndexMaker5.class
bbmapy/vendor/bbmap/current/align2/IndexMaker5.java
bbmapy/vendor/bbmap/current/align2/KeyRing.class
bbmapy/vendor/bbmap/current/align2/KeyRing.java
bbmapy/vendor/bbmap/current/align2/MSA.class
bbmapy/vendor/bbmap/current/align2/MSA.java
bbmapy/vendor/bbmap/current/align2/MakeQualityHistogram.class
bbmapy/vendor/bbmap/current/align2/MakeQualityHistogram.java
bbmapy/vendor/bbmap/current/align2/MakeRocCurve$1.class
bbmapy/vendor/bbmap/current/align2/MakeRocCurve.class
bbmapy/vendor/bbmap/current/align2/MakeRocCurve.java
bbmapy/vendor/bbmap/current/align2/MultiStateAligner10ts.class
bbmapy/vendor/bbmap/current/align2/MultiStateAligner10ts.java
bbmapy/vendor/bbmap/current/align2/MultiStateAligner11ts.class
bbmapy/vendor/bbmap/current/align2/MultiStateAligner11ts.java
bbmapy/vendor/bbmap/current/align2/MultiStateAligner11tsJNI.class
bbmapy/vendor/bbmap/current/align2/MultiStateAligner11tsJNI.java
bbmapy/vendor/bbmap/current/align2/MultiStateAligner9Flat.class
bbmapy/vendor/bbmap/current/align2/MultiStateAligner9Flat.java
bbmapy/vendor/bbmap/current/align2/MultiStateAligner9PacBio.class
bbmapy/vendor/bbmap/current/align2/MultiStateAligner9PacBio.java
bbmapy/vendor/bbmap/current/align2/MultiStateAligner9XFlat.class
bbmapy/vendor/bbmap/current/align2/MultiStateAligner9XFlat.java
bbmapy/vendor/bbmap/current/align2/MultiStateAligner9ts.class
bbmapy/vendor/bbmap/current/align2/MultiStateAligner9ts.java
bbmapy/vendor/bbmap/current/align2/NeedlemanWunsch.class
bbmapy/vendor/bbmap/current/align2/NeedlemanWunsch.java
bbmapy/vendor/bbmap/current/align2/PackedHeap.class
bbmapy/vendor/bbmap/current/align2/PackedHeap.java
bbmapy/vendor/bbmap/current/align2/Pointer.class
bbmapy/vendor/bbmap/current/align2/Pointer.java
bbmapy/vendor/bbmap/current/align2/PrintTime.class
bbmapy/vendor/bbmap/current/align2/PrintTime.java
bbmapy/vendor/bbmap/current/align2/Quad.class
bbmapy/vendor/bbmap/current/align2/Quad.java
bbmapy/vendor/bbmap/current/align2/Quad64.class
bbmapy/vendor/bbmap/current/align2/Quad64.java
bbmapy/vendor/bbmap/current/align2/Quad64Heap.class
bbmapy/vendor/bbmap/current/align2/Quad64Heap.java
bbmapy/vendor/bbmap/current/align2/QuadHeap.class
bbmapy/vendor/bbmap/current/align2/QuadHeap.java
bbmapy/vendor/bbmap/current/align2/QualityTools.class
bbmapy/vendor/bbmap/current/align2/QualityTools.java
bbmapy/vendor/bbmap/current/align2/RandomReads3$1.class
bbmapy/vendor/bbmap/current/align2/RandomReads3.class
bbmapy/vendor/bbmap/current/align2/RandomReads3.java
bbmapy/vendor/bbmap/current/align2/RefToIndex.class
bbmapy/vendor/bbmap/current/align2/RefToIndex.java
bbmapy/vendor/bbmap/current/align2/ReformatBatchOutput.class
bbmapy/vendor/bbmap/current/align2/ReformatBatchOutput.java
bbmapy/vendor/bbmap/current/align2/ReformatBatchOutput2.class
bbmapy/vendor/bbmap/current/align2/ReformatBatchOutput2.java
bbmapy/vendor/bbmap/current/align2/Solver.class
bbmapy/vendor/bbmap/current/align2/Solver.java
bbmapy/vendor/bbmap/current/align2/SplitMappedReads.class
bbmapy/vendor/bbmap/current/align2/SplitMappedReads.java
bbmapy/vendor/bbmap/current/align2/TranslateColorspaceRead.class
bbmapy/vendor/bbmap/current/align2/TranslateColorspaceRead.java
bbmapy/vendor/bbmap/current/aligner/Aligner.class
bbmapy/vendor/bbmap/current/aligner/Aligner.java
bbmapy/vendor/bbmap/current/aligner/Alignment.class
bbmapy/vendor/bbmap/current/aligner/Alignment.java
bbmapy/vendor/bbmap/current/aligner/AlignmentResult.class
bbmapy/vendor/bbmap/current/aligner/AlignmentResult.java
bbmapy/vendor/bbmap/current/aligner/AllToAll$ProcessThread.class
bbmapy/vendor/bbmap/current/aligner/AllToAll.class
bbmapy/vendor/bbmap/current/aligner/AllToAll.java
bbmapy/vendor/bbmap/current/aligner/FlatAligner.class
bbmapy/vendor/bbmap/current/aligner/FlatAligner.java
bbmapy/vendor/bbmap/current/aligner/FlatAligner2.class
bbmapy/vendor/bbmap/current/aligner/FlatAligner2.java
bbmapy/vendor/bbmap/current/aligner/MicroAligner.class
bbmapy/vendor/bbmap/current/aligner/MicroAligner.java
bbmapy/vendor/bbmap/current/aligner/MicroAligner2.class
bbmapy/vendor/bbmap/current/aligner/MicroAligner2.java
bbmapy/vendor/bbmap/current/aligner/MultiStateAligner9PacBioAdapter.class
bbmapy/vendor/bbmap/current/aligner/MultiStateAligner9PacBioAdapter.java
bbmapy/vendor/bbmap/current/aligner/MultiStateAligner9PacBioAdapter2.class
bbmapy/vendor/bbmap/current/aligner/MultiStateAligner9PacBioAdapter2.java
bbmapy/vendor/bbmap/current/aligner/MultiStateAligner9PacBioAdapter3.class
bbmapy/vendor/bbmap/current/aligner/MultiStateAligner9PacBioAdapter3.java
bbmapy/vendor/bbmap/current/aligner/MultiStateAligner9PacBioAdapter_WithBarriers.class
bbmapy/vendor/bbmap/current/aligner/MultiStateAligner9PacBioAdapter_WithBarriers.java
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat.class
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat.java
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat2.class
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat2.java
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat2Amino.class
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat2Amino.java
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat2_1D.class
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat2_1D.java
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat3.class
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlat3.java
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlatFloat.class
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerFlatFloat.java
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerPacBioAdapter.class
bbmapy/vendor/bbmap/current/aligner/SingleStateAlignerPacBioAdapter.java
bbmapy/vendor/bbmap/current/assemble/AbstractBuildThread.class
bbmapy/vendor/bbmap/current/assemble/AbstractBuildThread.java
bbmapy/vendor/bbmap/current/assemble/AbstractExploreThread.class
bbmapy/vendor/bbmap/current/assemble/AbstractExploreThread.java
bbmapy/vendor/bbmap/current/assemble/AbstractProcessContigThread.class
bbmapy/vendor/bbmap/current/assemble/AbstractProcessContigThread.java
bbmapy/vendor/bbmap/current/assemble/AbstractRemoveThread$RemoveThread1.class
bbmapy/vendor/bbmap/current/assemble/AbstractRemoveThread$RemoveThread2.class
bbmapy/vendor/bbmap/current/assemble/AbstractRemoveThread.class
bbmapy/vendor/bbmap/current/assemble/AbstractRemoveThread.java
bbmapy/vendor/bbmap/current/assemble/AbstractShaveThread.class
bbmapy/vendor/bbmap/current/assemble/AbstractShaveThread.java
bbmapy/vendor/bbmap/current/assemble/BubblePopper.class
bbmapy/vendor/bbmap/current/assemble/BubblePopper.java
bbmapy/vendor/bbmap/current/assemble/Contig.class
bbmapy/vendor/bbmap/current/assemble/Contig.java
bbmapy/vendor/bbmap/current/assemble/Edge.class
bbmapy/vendor/bbmap/current/assemble/Edge.java
bbmapy/vendor/bbmap/current/assemble/ErrorTracker.class
bbmapy/vendor/bbmap/current/assemble/ErrorTracker.java
bbmapy/vendor/bbmap/current/assemble/KmerCompressor$BuildThread.class
bbmapy/vendor/bbmap/current/assemble/KmerCompressor.class
bbmapy/vendor/bbmap/current/assemble/KmerCompressor.java
bbmapy/vendor/bbmap/current/assemble/Postfilter.class
bbmapy/vendor/bbmap/current/assemble/Postfilter.java
bbmapy/vendor/bbmap/current/assemble/Rollback.class
bbmapy/vendor/bbmap/current/assemble/Rollback.java
bbmapy/vendor/bbmap/current/assemble/ShaveObject.class
bbmapy/vendor/bbmap/current/assemble/ShaveObject.java
bbmapy/vendor/bbmap/current/assemble/Shaver.class
bbmapy/vendor/bbmap/current/assemble/Shaver.java
bbmapy/vendor/bbmap/current/assemble/Shaver1$ExploreThread.class
bbmapy/vendor/bbmap/current/assemble/Shaver1$ShaveThread.class
bbmapy/vendor/bbmap/current/assemble/Shaver1.class
bbmapy/vendor/bbmap/current/assemble/Shaver1.java
bbmapy/vendor/bbmap/current/assemble/Shaver2$ExploreThread.class
bbmapy/vendor/bbmap/current/assemble/Shaver2$ShaveThread.class
bbmapy/vendor/bbmap/current/assemble/Shaver2.class
bbmapy/vendor/bbmap/current/assemble/Shaver2.java
bbmapy/vendor/bbmap/current/assemble/TadPipe.class
bbmapy/vendor/bbmap/current/assemble/TadPipe.java
bbmapy/vendor/bbmap/current/assemble/Tadpole$DumpKmersThread.class
bbmapy/vendor/bbmap/current/assemble/Tadpole$ExtendThread.class
bbmapy/vendor/bbmap/current/assemble/Tadpole$MakeKhistThread.class
bbmapy/vendor/bbmap/current/assemble/Tadpole.class
bbmapy/vendor/bbmap/current/assemble/Tadpole.java
bbmapy/vendor/bbmap/current/assemble/Tadpole1$BuildThread.class
bbmapy/vendor/bbmap/current/assemble/Tadpole1$ProcessContigThread.class
bbmapy/vendor/bbmap/current/assemble/Tadpole1.class
bbmapy/vendor/bbmap/current/assemble/Tadpole1.java
bbmapy/vendor/bbmap/current/assemble/Tadpole2$BuildThread.class
bbmapy/vendor/bbmap/current/assemble/Tadpole2$ProcessContigThread.class
bbmapy/vendor/bbmap/current/assemble/Tadpole2.class
bbmapy/vendor/bbmap/current/assemble/Tadpole2.java
bbmapy/vendor/bbmap/current/assemble/TadpoleWrapper$1.class
bbmapy/vendor/bbmap/current/assemble/TadpoleWrapper$Record.class
bbmapy/vendor/bbmap/current/assemble/TadpoleWrapper.class
bbmapy/vendor/bbmap/current/assemble/TadpoleWrapper.java
bbmapy/vendor/bbmap/current/barcode/AnalyzeBarcodes.class
bbmapy/vendor/bbmap/current/barcode/AnalyzeBarcodes.java
bbmapy/vendor/bbmap/current/barcode/Barcode.class
bbmapy/vendor/bbmap/current/barcode/Barcode.java
bbmapy/vendor/bbmap/current/barcode/BarcodeCounter.class
bbmapy/vendor/bbmap/current/barcode/BarcodeCounter.java
bbmapy/vendor/bbmap/current/barcode/BarcodeMappingStats.class
bbmapy/vendor/bbmap/current/barcode/BarcodeMappingStats.java
bbmapy/vendor/bbmap/current/barcode/BarcodeStats.class
bbmapy/vendor/bbmap/current/barcode/BarcodeStats.java
bbmapy/vendor/bbmap/current/barcode/CompareLabels$Label.class
bbmapy/vendor/bbmap/current/barcode/CompareLabels.class
bbmapy/vendor/bbmap/current/barcode/CompareLabels.java
bbmapy/vendor/bbmap/current/barcode/CorrelateBarcodes.class
bbmapy/vendor/bbmap/current/barcode/CorrelateBarcodes.java
bbmapy/vendor/bbmap/current/barcode/CountBarcodes.class
bbmapy/vendor/bbmap/current/barcode/CountBarcodes.java
bbmapy/vendor/bbmap/current/barcode/CountBarcodes2.class
bbmapy/vendor/bbmap/current/barcode/CountBarcodes2.java
bbmapy/vendor/bbmap/current/barcode/DemuxClient.class
bbmapy/vendor/bbmap/current/barcode/DemuxClient.java
bbmapy/vendor/bbmap/current/barcode/DemuxData.class
bbmapy/vendor/bbmap/current/barcode/DemuxData.java
bbmapy/vendor/bbmap/current/barcode/DemuxServer$BaseHandler.class
bbmapy/vendor/bbmap/current/barcode/DemuxServer$DemuxHandler.class
bbmapy/vendor/bbmap/current/barcode/DemuxServer$IconHandler.class
bbmapy/vendor/bbmap/current/barcode/DemuxServer$KillHandler.class
bbmapy/vendor/bbmap/current/barcode/DemuxServer$Pair.class
bbmapy/vendor/bbmap/current/barcode/DemuxServer$StatsHandler.class
bbmapy/vendor/bbmap/current/barcode/DemuxServer.class
bbmapy/vendor/bbmap/current/barcode/DemuxServer.java
bbmapy/vendor/bbmap/current/barcode/LegacyFileWriter$QTag.class
bbmapy/vendor/bbmap/current/barcode/LegacyFileWriter.class
bbmapy/vendor/bbmap/current/barcode/LegacyFileWriter.java
bbmapy/vendor/bbmap/current/barcode/NovaDemux.class
bbmapy/vendor/bbmap/current/barcode/NovaDemux.java
bbmapy/vendor/bbmap/current/barcode/PCRMatrix$MapLine.class
bbmapy/vendor/bbmap/current/barcode/PCRMatrix.class
bbmapy/vendor/bbmap/current/barcode/PCRMatrix.java
bbmapy/vendor/bbmap/current/barcode/PCRMatrixHDist$PopThread.class
bbmapy/vendor/bbmap/current/barcode/PCRMatrixHDist.class
bbmapy/vendor/bbmap/current/barcode/PCRMatrixHDist.java
bbmapy/vendor/bbmap/current/barcode/PCRMatrixHDist_old$PopThread.class
bbmapy/vendor/bbmap/current/barcode/PCRMatrixHDist_old.class
bbmapy/vendor/bbmap/current/barcode/PCRMatrixHDist_old.java
bbmapy/vendor/bbmap/current/barcode/TagAndMerge.class
bbmapy/vendor/bbmap/current/barcode/TagAndMerge.java
bbmapy/vendor/bbmap/current/barcode/Transition.class
bbmapy/vendor/bbmap/current/barcode/Transition.java
bbmapy/vendor/bbmap/current/barcode/prob/PCRMatrixProb.class
bbmapy/vendor/bbmap/current/barcode/prob/PCRMatrixProb.java
bbmapy/vendor/bbmap/current/barcode/prob/PCRMatrixProbAbstract.class
bbmapy/vendor/bbmap/current/barcode/prob/PCRMatrixProbAbstract.java
bbmapy/vendor/bbmap/current/barcode/prob/PCRMatrixTile.class
bbmapy/vendor/bbmap/current/barcode/prob/PCRMatrixTile.java
bbmapy/vendor/bbmap/current/bbmin/LongHashSet.class
bbmapy/vendor/bbmap/current/bbmin/LongHashSet.java
bbmapy/vendor/bbmap/current/bbmin/LongList.class
bbmapy/vendor/bbmap/current/bbmin/LongList.java
bbmapy/vendor/bbmap/current/bbmin/Minimizer.class
bbmapy/vendor/bbmap/current/bbmin/Minimizer.java
bbmapy/vendor/bbmap/current/bloom/BloomFilter.class
bbmapy/vendor/bbmap/current/bloom/BloomFilter.java
bbmapy/vendor/bbmap/current/bloom/BloomFilterCorrector.class
bbmapy/vendor/bbmap/current/bloom/BloomFilterCorrector.java
bbmapy/vendor/bbmap/current/bloom/BloomFilterCorrectorWrapper$ProcessThread.class
bbmapy/vendor/bbmap/current/bloom/BloomFilterCorrectorWrapper.class
bbmapy/vendor/bbmap/current/bloom/BloomFilterCorrectorWrapper.java
bbmapy/vendor/bbmap/current/bloom/BloomFilterWrapper$ProcessThread.class
bbmapy/vendor/bbmap/current/bloom/BloomFilterWrapper.class
bbmapy/vendor/bbmap/current/bloom/BloomFilterWrapper.java
bbmapy/vendor/bbmap/current/bloom/ErrorCorrect$1.class
bbmapy/vendor/bbmap/current/bloom/ErrorCorrect.class
bbmapy/vendor/bbmap/current/bloom/ErrorCorrect.java
bbmapy/vendor/bbmap/current/bloom/IndexCounter$CountThread.class
bbmapy/vendor/bbmap/current/bloom/IndexCounter.class
bbmapy/vendor/bbmap/current/bloom/IndexCounter.java
bbmapy/vendor/bbmap/current/bloom/KCountArray$AllocThread.class
bbmapy/vendor/bbmap/current/bloom/KCountArray.class
bbmapy/vendor/bbmap/current/bloom/KCountArray.java
bbmapy/vendor/bbmap/current/bloom/KCountArray2.class
bbmapy/vendor/bbmap/current/bloom/KCountArray2.java
bbmapy/vendor/bbmap/current/bloom/KCountArray3.class
bbmapy/vendor/bbmap/current/bloom/KCountArray3.java
bbmapy/vendor/bbmap/current/bloom/KCountArray4.class
bbmapy/vendor/bbmap/current/bloom/KCountArray4.java
bbmapy/vendor/bbmap/current/bloom/KCountArray4MT$WriteThread.class
bbmapy/vendor/bbmap/current/bloom/KCountArray4MT.class
bbmapy/vendor/bbmap/current/bloom/KCountArray4MT.java
bbmapy/vendor/bbmap/current/bloom/KCountArray5MT$WriteThread.class
bbmapy/vendor/bbmap/current/bloom/KCountArray5MT.class
bbmapy/vendor/bbmap/current/bloom/KCountArray5MT.java
bbmapy/vendor/bbmap/current/bloom/KCountArray6MT$WriteThread.class
bbmapy/vendor/bbmap/current/bloom/KCountArray6MT.class
bbmapy/vendor/bbmap/current/bloom/KCountArray6MT.java
bbmapy/vendor/bbmap/current/bloom/KCountArray7MT$WriteThread.class
bbmapy/vendor/bbmap/current/bloom/KCountArray7MT.class
bbmapy/vendor/bbmap/current/bloom/KCountArray7MT.java
bbmapy/vendor/bbmap/current/bloom/KCountArray7MTA$CountUsedThread.class
bbmapy/vendor/bbmap/current/bloom/KCountArray7MTA.class
bbmapy/vendor/bbmap/current/bloom/KCountArray7MTA.java
bbmapy/vendor/bbmap/current/bloom/KCountArray8MT$WriteThread.class
bbmapy/vendor/bbmap/current/bloom/KCountArray8MT.class
bbmapy/vendor/bbmap/current/bloom/KCountArray8MT.java
bbmapy/vendor/bbmap/current/bloom/KmerCount3.class
bbmapy/vendor/bbmap/current/bloom/KmerCount3.java
bbmapy/vendor/bbmap/current/bloom/KmerCount4.class
bbmapy/vendor/bbmap/current/bloom/KmerCount4.java
bbmapy/vendor/bbmap/current/bloom/KmerCount5.class
bbmapy/vendor/bbmap/current/bloom/KmerCount5.java
bbmapy/vendor/bbmap/current/bloom/KmerCount6.class
bbmapy/vendor/bbmap/current/bloom/KmerCount6.java
bbmapy/vendor/bbmap/current/bloom/KmerCountAbstract.class
bbmapy/vendor/bbmap/current/bloom/KmerCountAbstract.java
bbmapy/vendor/bbmap/current/bloom/LargeKmerCount.class
bbmapy/vendor/bbmap/current/bloom/LargeKmerCount.java
bbmapy/vendor/bbmap/current/bloom/LargeKmerCount2.class
bbmapy/vendor/bbmap/current/bloom/LargeKmerCount2.java
bbmapy/vendor/bbmap/current/bloom/ParseBloomFilter.class
bbmapy/vendor/bbmap/current/bloom/ParseBloomFilter.java
bbmapy/vendor/bbmap/current/bloom/ReadCounter$1.class
bbmapy/vendor/bbmap/current/bloom/ReadCounter$CountThread.class
bbmapy/vendor/bbmap/current/bloom/ReadCounter.class
bbmapy/vendor/bbmap/current/bloom/ReadCounter.java
bbmapy/vendor/bbmap/current/bloom/ReadCounter_old$1.class
bbmapy/vendor/bbmap/current/bloom/ReadCounter_old$CountThread.class
bbmapy/vendor/bbmap/current/bloom/ReadCounter_old.class
bbmapy/vendor/bbmap/current/bloom/ReadCounter_old.java
bbmapy/vendor/bbmap/current/bloom/TestLargeKmer.class
bbmapy/vendor/bbmap/current/bloom/TestLargeKmer.java
bbmapy/vendor/bbmap/current/cardinality/BBLog.class
bbmapy/vendor/bbmap/current/cardinality/BBLog.java
bbmapy/vendor/bbmap/current/cardinality/BBLog_simple.class
bbmapy/vendor/bbmap/current/cardinality/BBLog_simple.java
bbmapy/vendor/bbmap/current/cardinality/CardinalityTracker.class
bbmapy/vendor/bbmap/current/cardinality/CardinalityTracker.java
bbmapy/vendor/bbmap/current/cardinality/LogLog.class
bbmapy/vendor/bbmap/current/cardinality/LogLog.java
bbmapy/vendor/bbmap/current/cardinality/LogLog16.class
bbmapy/vendor/bbmap/current/cardinality/LogLog16.java
bbmapy/vendor/bbmap/current/cardinality/LogLog2.class
bbmapy/vendor/bbmap/current/cardinality/LogLog2.java
bbmapy/vendor/bbmap/current/cardinality/LogLog8.class
bbmapy/vendor/bbmap/current/cardinality/LogLog8.java
bbmapy/vendor/bbmap/current/cardinality/LogLog8_simple.class
bbmapy/vendor/bbmap/current/cardinality/LogLog8_simple.java
bbmapy/vendor/bbmap/current/cardinality/LogLogWrapper$LogLogThread.class
bbmapy/vendor/bbmap/current/cardinality/LogLogWrapper.class
bbmapy/vendor/bbmap/current/cardinality/LogLogWrapper.java
bbmapy/vendor/bbmap/current/cardinality/LogLog_old$LogLogWrapper$LogLogThread.class
bbmapy/vendor/bbmap/current/cardinality/LogLog_old$LogLogWrapper.class
bbmapy/vendor/bbmap/current/cardinality/LogLog_old.class
bbmapy/vendor/bbmap/current/cardinality/LogLog_old.java
bbmapy/vendor/bbmap/current/cardinality/MultiLogLog.class
bbmapy/vendor/bbmap/current/cardinality/MultiLogLog.java
bbmapy/vendor/bbmap/current/clump/Clump.class
bbmapy/vendor/bbmap/current/clump/Clump.java
bbmapy/vendor/bbmap/current/clump/ClumpList$ClumpThread.class
bbmapy/vendor/bbmap/current/clump/ClumpList$ProcessThread.class
bbmapy/vendor/bbmap/current/clump/ClumpList.class
bbmapy/vendor/bbmap/current/clump/ClumpList.java
bbmapy/vendor/bbmap/current/clump/ClumpTools.class
bbmapy/vendor/bbmap/current/clump/ClumpTools.java
bbmapy/vendor/bbmap/current/clump/Clumpify.class
bbmapy/vendor/bbmap/current/clump/Clumpify.java
bbmapy/vendor/bbmap/current/clump/Hasher.class
bbmapy/vendor/bbmap/current/clump/Hasher.java
bbmapy/vendor/bbmap/current/clump/KmerComparator$HashThread.class
bbmapy/vendor/bbmap/current/clump/KmerComparator.class
bbmapy/vendor/bbmap/current/clump/KmerComparator.java
bbmapy/vendor/bbmap/current/clump/KmerComparator2.class
bbmapy/vendor/bbmap/current/clump/KmerComparator2.java
bbmapy/vendor/bbmap/current/clump/KmerComparatorX.class
bbmapy/vendor/bbmap/current/clump/KmerComparatorX.java
bbmapy/vendor/bbmap/current/clump/KmerComparatorY.class
bbmapy/vendor/bbmap/current/clump/KmerComparatorY.java
bbmapy/vendor/bbmap/current/clump/KmerReduce$HashThread.class
bbmapy/vendor/bbmap/current/clump/KmerReduce.class
bbmapy/vendor/bbmap/current/clump/KmerReduce.java
bbmapy/vendor/bbmap/current/clump/KmerSort$FetchThread1.class
bbmapy/vendor/bbmap/current/clump/KmerSort$HashSplitThread.class
bbmapy/vendor/bbmap/current/clump/KmerSort.class
bbmapy/vendor/bbmap/current/clump/KmerSort.java
bbmapy/vendor/bbmap/current/clump/KmerSort1.class
bbmapy/vendor/bbmap/current/clump/KmerSort1.java
bbmapy/vendor/bbmap/current/clump/KmerSort2.class
bbmapy/vendor/bbmap/current/clump/KmerSort2.java
bbmapy/vendor/bbmap/current/clump/KmerSort3$FetchThread3$FetchSubThread.class
bbmapy/vendor/bbmap/current/clump/KmerSort3$FetchThread3.class
bbmapy/vendor/bbmap/current/clump/KmerSort3.class
bbmapy/vendor/bbmap/current/clump/KmerSort3.java
bbmapy/vendor/bbmap/current/clump/KmerSplit$HashThread.class
bbmapy/vendor/bbmap/current/clump/KmerSplit.class
bbmapy/vendor/bbmap/current/clump/KmerSplit.java
bbmapy/vendor/bbmap/current/clump/PivotSet$HashThread.class
bbmapy/vendor/bbmap/current/clump/PivotSet.class
bbmapy/vendor/bbmap/current/clump/PivotSet.java
bbmapy/vendor/bbmap/current/clump/ReadKey.class
bbmapy/vendor/bbmap/current/clump/ReadKey.java
bbmapy/vendor/bbmap/current/clump/Splitter.class
bbmapy/vendor/bbmap/current/clump/Splitter.java
bbmapy/vendor/bbmap/current/clump/StreamToOutput.class
bbmapy/vendor/bbmap/current/clump/StreamToOutput.java
bbmapy/vendor/bbmap/current/cluster/Cluster.class
bbmapy/vendor/bbmap/current/cluster/Cluster.java
bbmapy/vendor/bbmap/current/cluster/ClusterTools.class
bbmapy/vendor/bbmap/current/cluster/ClusterTools.java
bbmapy/vendor/bbmap/current/cluster/MergeReadHeaders.class
bbmapy/vendor/bbmap/current/cluster/MergeReadHeaders.java
bbmapy/vendor/bbmap/current/cluster/ReadTag.class
bbmapy/vendor/bbmap/current/cluster/ReadTag.java
bbmapy/vendor/bbmap/current/cluster/ReclusterByKmer$ClusterThread.class
bbmapy/vendor/bbmap/current/cluster/ReclusterByKmer.class
bbmapy/vendor/bbmap/current/cluster/ReclusterByKmer.java
bbmapy/vendor/bbmap/current/consensus/BaseGraph.class
bbmapy/vendor/bbmap/current/consensus/BaseGraph.java
bbmapy/vendor/bbmap/current/consensus/BaseGraphPart.class
bbmapy/vendor/bbmap/current/consensus/BaseGraphPart.java
bbmapy/vendor/bbmap/current/consensus/BaseNode.class
bbmapy/vendor/bbmap/current/consensus/BaseNode.java
bbmapy/vendor/bbmap/current/consensus/ConsensusMaker$ProcessThread.class
bbmapy/vendor/bbmap/current/consensus/ConsensusMaker.class
bbmapy/vendor/bbmap/current/consensus/ConsensusMaker.java
bbmapy/vendor/bbmap/current/consensus/ConsensusObject.class
bbmapy/vendor/bbmap/current/consensus/ConsensusObject.java
bbmapy/vendor/bbmap/current/consensus/FixScaffoldGaps$ProcessThread.class
bbmapy/vendor/bbmap/current/consensus/FixScaffoldGaps$Scaffold.class
bbmapy/vendor/bbmap/current/consensus/FixScaffoldGaps.class
bbmapy/vendor/bbmap/current/consensus/FixScaffoldGaps.java
bbmapy/vendor/bbmap/current/consensus/Lilypad$Contig.class
bbmapy/vendor/bbmap/current/consensus/Lilypad$Edge.class
bbmapy/vendor/bbmap/current/consensus/Lilypad$ProcessThread.class
bbmapy/vendor/bbmap/current/consensus/Lilypad.class
bbmapy/vendor/bbmap/current/consensus/Lilypad.java
bbmapy/vendor/bbmap/current/covid/SummarizeCoverage.class
bbmapy/vendor/bbmap/current/covid/SummarizeCoverage.java
bbmapy/vendor/bbmap/current/dna/AminoAcid.class
bbmapy/vendor/bbmap/current/dna/AminoAcid.java
bbmapy/vendor/bbmap/current/dna/ChromArrayMaker.class
bbmapy/vendor/bbmap/current/dna/ChromArrayMaker.java
bbmapy/vendor/bbmap/current/dna/ChromToFasta$1.class
bbmapy/vendor/bbmap/current/dna/ChromToFasta.class
bbmapy/vendor/bbmap/current/dna/ChromToFasta.java
bbmapy/vendor/bbmap/current/dna/ChromosomeArray.class
bbmapy/vendor/bbmap/current/dna/ChromosomeArray.java
bbmapy/vendor/bbmap/current/dna/Data.class
bbmapy/vendor/bbmap/current/dna/Data.java
bbmapy/vendor/bbmap/current/dna/Exon.class
bbmapy/vendor/bbmap/current/dna/Exon.java
bbmapy/vendor/bbmap/current/dna/FastaToChromArrays2$1.class
bbmapy/vendor/bbmap/current/dna/FastaToChromArrays2.class
bbmapy/vendor/bbmap/current/dna/FastaToChromArrays2.java
bbmapy/vendor/bbmap/current/dna/Gene.class
bbmapy/vendor/bbmap/current/dna/Gene.java
bbmapy/vendor/bbmap/current/dna/GeneSet.class
bbmapy/vendor/bbmap/current/dna/GeneSet.java
bbmapy/vendor/bbmap/current/dna/Matrix.class
bbmapy/vendor/bbmap/current/dna/Matrix.java
bbmapy/vendor/bbmap/current/dna/Motif.class
bbmapy/vendor/bbmap/current/dna/Motif.java
bbmapy/vendor/bbmap/current/dna/MotifMulti.class
bbmapy/vendor/bbmap/current/dna/MotifMulti.java
bbmapy/vendor/bbmap/current/dna/MotifProbsN.class
bbmapy/vendor/bbmap/current/dna/MotifProbsN.java
bbmapy/vendor/bbmap/current/dna/MotifSimple.class
bbmapy/vendor/bbmap/current/dna/MotifSimple.java
bbmapy/vendor/bbmap/current/dna/ScafLoc.class
bbmapy/vendor/bbmap/current/dna/ScafLoc.java
bbmapy/vendor/bbmap/current/dna/Scaffold.class
bbmapy/vendor/bbmap/current/dna/Scaffold.java
bbmapy/vendor/bbmap/current/driver/BBVersion.class
bbmapy/vendor/bbmap/current/driver/BBVersion.java
bbmapy/vendor/bbmap/current/driver/ClearRam.class
bbmapy/vendor/bbmap/current/driver/ClearRam.java
bbmapy/vendor/bbmap/current/driver/CollateSpikeIn.class
bbmapy/vendor/bbmap/current/driver/CollateSpikeIn.java
bbmapy/vendor/bbmap/current/driver/CompareReferenceGenomes.class
bbmapy/vendor/bbmap/current/driver/CompareReferenceGenomes.java
bbmapy/vendor/bbmap/current/driver/CompareSequences.class
bbmapy/vendor/bbmap/current/driver/CompareSequences.java
bbmapy/vendor/bbmap/current/driver/ConcatenateFiles.class
bbmapy/vendor/bbmap/current/driver/ConcatenateFiles.java
bbmapy/vendor/bbmap/current/driver/ConcatenateTextFiles$1.class
bbmapy/vendor/bbmap/current/driver/ConcatenateTextFiles$WriteThread.class
bbmapy/vendor/bbmap/current/driver/ConcatenateTextFiles.class
bbmapy/vendor/bbmap/current/driver/ConcatenateTextFiles.java
bbmapy/vendor/bbmap/current/driver/Concatenator.class
bbmapy/vendor/bbmap/current/driver/Concatenator.java
bbmapy/vendor/bbmap/current/driver/ConvertSamToAln.class
bbmapy/vendor/bbmap/current/driver/ConvertSamToAln.java
bbmapy/vendor/bbmap/current/driver/CorrelateIdentity.class
bbmapy/vendor/bbmap/current/driver/CorrelateIdentity.java
bbmapy/vendor/bbmap/current/driver/CountRNAs.class
bbmapy/vendor/bbmap/current/driver/CountRNAs.java
bbmapy/vendor/bbmap/current/driver/CountSharedLines.class
bbmapy/vendor/bbmap/current/driver/CountSharedLines.java
bbmapy/vendor/bbmap/current/driver/EstherFilter.class
bbmapy/vendor/bbmap/current/driver/EstherFilter.java
bbmapy/vendor/bbmap/current/driver/FilterAssemblySummary.class
bbmapy/vendor/bbmap/current/driver/FilterAssemblySummary.java
bbmapy/vendor/bbmap/current/driver/FilterLines.class
bbmapy/vendor/bbmap/current/driver/FilterLines.java
bbmapy/vendor/bbmap/current/driver/FilterReadsByName.class
bbmapy/vendor/bbmap/current/driver/FilterReadsByName.java
bbmapy/vendor/bbmap/current/driver/FindMotifs.class
bbmapy/vendor/bbmap/current/driver/FindMotifs.java
bbmapy/vendor/bbmap/current/driver/FixChr.class
bbmapy/vendor/bbmap/current/driver/FixChr.java
bbmapy/vendor/bbmap/current/driver/FixDumbFile.class
bbmapy/vendor/bbmap/current/driver/FixDumbFile.java
bbmapy/vendor/bbmap/current/driver/GenerateNoCallsFromCoverage.class
bbmapy/vendor/bbmap/current/driver/GenerateNoCallsFromCoverage.java
bbmapy/vendor/bbmap/current/driver/GetSequence.class
bbmapy/vendor/bbmap/current/driver/GetSequence.java
bbmapy/vendor/bbmap/current/driver/GetUniquePrefixes.class
bbmapy/vendor/bbmap/current/driver/GetUniquePrefixes.java
bbmapy/vendor/bbmap/current/driver/Grep.class
bbmapy/vendor/bbmap/current/driver/Grep.java
bbmapy/vendor/bbmap/current/driver/Life.class
bbmapy/vendor/bbmap/current/driver/Life.java
bbmapy/vendor/bbmap/current/driver/LineCount.class
bbmapy/vendor/bbmap/current/driver/LineCount.java
bbmapy/vendor/bbmap/current/driver/LoadReads.class
bbmapy/vendor/bbmap/current/driver/LoadReads.java
bbmapy/vendor/bbmap/current/driver/LookAtID.class
bbmapy/vendor/bbmap/current/driver/LookAtID.java
bbmapy/vendor/bbmap/current/driver/MakeTestScript.class
bbmapy/vendor/bbmap/current/driver/MakeTestScript.java
bbmapy/vendor/bbmap/current/driver/MakeTestScriptScoreOnly.class
bbmapy/vendor/bbmap/current/driver/MakeTestScriptScoreOnly.java
bbmapy/vendor/bbmap/current/driver/MeasureGene.class
bbmapy/vendor/bbmap/current/driver/MeasureGene.java
bbmapy/vendor/bbmap/current/driver/MergeBigelow.class
bbmapy/vendor/bbmap/current/driver/MergeBigelow.java
bbmapy/vendor/bbmap/current/driver/MergeCoverageOTU.class
bbmapy/vendor/bbmap/current/driver/MergeCoverageOTU.java
bbmapy/vendor/bbmap/current/driver/MergeTextFiles.class
bbmapy/vendor/bbmap/current/driver/MergeTextFiles.java
bbmapy/vendor/bbmap/current/driver/MergeTextFiles2.class
bbmapy/vendor/bbmap/current/driver/MergeTextFiles2.java
bbmapy/vendor/bbmap/current/driver/MoveFiles.class
bbmapy/vendor/bbmap/current/driver/MoveFiles.java
bbmapy/vendor/bbmap/current/driver/ParseCrossblockResults$ResultsLine.class
bbmapy/vendor/bbmap/current/driver/ParseCrossblockResults.class
bbmapy/vendor/bbmap/current/driver/ParseCrossblockResults.java
bbmapy/vendor/bbmap/current/driver/PlotGC.class
bbmapy/vendor/bbmap/current/driver/PlotGC.java
bbmapy/vendor/bbmap/current/driver/PrintEnv.class
bbmapy/vendor/bbmap/current/driver/PrintEnv.java
bbmapy/vendor/bbmap/current/driver/ProcessFragMerging.class
bbmapy/vendor/bbmap/current/driver/ProcessFragMerging.java
bbmapy/vendor/bbmap/current/driver/ProcessSpeed.class
bbmapy/vendor/bbmap/current/driver/ProcessSpeed.java
bbmapy/vendor/bbmap/current/driver/ProcessSpeed2.class
bbmapy/vendor/bbmap/current/driver/ProcessSpeed2.java
bbmapy/vendor/bbmap/current/driver/ProcessWebcheck.class
bbmapy/vendor/bbmap/current/driver/ProcessWebcheck.java
bbmapy/vendor/bbmap/current/driver/ReduceSilva.class
bbmapy/vendor/bbmap/current/driver/ReduceSilva.java
bbmapy/vendor/bbmap/current/driver/RenameAndMux$MuxThread.class
bbmapy/vendor/bbmap/current/driver/RenameAndMux.class
bbmapy/vendor/bbmap/current/driver/RenameAndMux.java
bbmapy/vendor/bbmap/current/driver/RenameByHeader.class
bbmapy/vendor/bbmap/current/driver/RenameByHeader.java
bbmapy/vendor/bbmap/current/driver/RenameNcbiToTid.class
bbmapy/vendor/bbmap/current/driver/RenameNcbiToTid.java
bbmapy/vendor/bbmap/current/driver/RenameRefseqFiles.class
bbmapy/vendor/bbmap/current/driver/RenameRefseqFiles.java
bbmapy/vendor/bbmap/current/driver/Sample.class
bbmapy/vendor/bbmap/current/driver/Sample.java
bbmapy/vendor/bbmap/current/driver/Search.class
bbmapy/vendor/bbmap/current/driver/Search.java
bbmapy/vendor/bbmap/current/driver/SelectReads.class
bbmapy/vendor/bbmap/current/driver/SelectReads.java
bbmapy/vendor/bbmap/current/driver/SniffSplices.class
bbmapy/vendor/bbmap/current/driver/SniffSplices.java
bbmapy/vendor/bbmap/current/driver/SummarizeContamReport$ComparatorA.class
bbmapy/vendor/bbmap/current/driver/SummarizeContamReport$ComparatorB.class
bbmapy/vendor/bbmap/current/driver/SummarizeContamReport$StringLongLong.class
bbmapy/vendor/bbmap/current/driver/SummarizeContamReport.class
bbmapy/vendor/bbmap/current/driver/SummarizeContamReport.java
bbmapy/vendor/bbmap/current/driver/SummarizeCoverage.class
bbmapy/vendor/bbmap/current/driver/SummarizeCoverage.java
bbmapy/vendor/bbmap/current/driver/SummarizeCrossblock.class
bbmapy/vendor/bbmap/current/driver/SummarizeCrossblock.java
bbmapy/vendor/bbmap/current/driver/SummarizeMSDIN.class
bbmapy/vendor/bbmap/current/driver/SummarizeMSDIN.java
bbmapy/vendor/bbmap/current/driver/SummarizeQuast$Entry.class
bbmapy/vendor/bbmap/current/driver/SummarizeQuast$QuastSummary.class
bbmapy/vendor/bbmap/current/driver/SummarizeQuast.class
bbmapy/vendor/bbmap/current/driver/SummarizeQuast.java
bbmapy/vendor/bbmap/current/driver/SummarizeSealCrosstalk$Result.class
bbmapy/vendor/bbmap/current/driver/SummarizeSealCrosstalk.class
bbmapy/vendor/bbmap/current/driver/SummarizeSealCrosstalk.java
bbmapy/vendor/bbmap/current/driver/SummarizeSealStats$SealSummary.class
bbmapy/vendor/bbmap/current/driver/SummarizeSealStats.class
bbmapy/vendor/bbmap/current/driver/SummarizeSealStats.java
bbmapy/vendor/bbmap/current/driver/TestCompressionSpeed.class
bbmapy/vendor/bbmap/current/driver/TestCompressionSpeed.java
bbmapy/vendor/bbmap/current/driver/TestLockSpeed$1.class
bbmapy/vendor/bbmap/current/driver/TestLockSpeed$AtomBox.class
bbmapy/vendor/bbmap/current/driver/TestLockSpeed$CountBox.class
bbmapy/vendor/bbmap/current/driver/TestLockSpeed$CountThread.class
bbmapy/vendor/bbmap/current/driver/TestLockSpeed$LockBox.class
bbmapy/vendor/bbmap/current/driver/TestLockSpeed$VolatileBox.class
bbmapy/vendor/bbmap/current/driver/TestLockSpeed.class
bbmapy/vendor/bbmap/current/driver/TestLockSpeed.java
bbmapy/vendor/bbmap/current/driver/Translator.class
bbmapy/vendor/bbmap/current/driver/Translator.java
bbmapy/vendor/bbmap/current/driver/Translator2.class
bbmapy/vendor/bbmap/current/driver/Translator2.java
bbmapy/vendor/bbmap/current/driver/TransposeTextFile.class
bbmapy/vendor/bbmap/current/driver/TransposeTextFile.java
bbmapy/vendor/bbmap/current/driver/TrimSamFile.class
bbmapy/vendor/bbmap/current/driver/TrimSamFile.java
bbmapy/vendor/bbmap/current/fileIO/ArrayFile.class
bbmapy/vendor/bbmap/current/fileIO/ArrayFile.java
bbmapy/vendor/bbmap/current/fileIO/ByteFile.class
bbmapy/vendor/bbmap/current/fileIO/ByteFile.java
bbmapy/vendor/bbmap/current/fileIO/ByteFile1.class
bbmapy/vendor/bbmap/current/fileIO/ByteFile1.java
bbmapy/vendor/bbmap/current/fileIO/ByteFile2$BF1Thread.class
bbmapy/vendor/bbmap/current/fileIO/ByteFile2.class
bbmapy/vendor/bbmap/current/fileIO/ByteFile2.java
bbmapy/vendor/bbmap/current/fileIO/ByteStreamWriter.class
bbmapy/vendor/bbmap/current/fileIO/ByteStreamWriter.java
bbmapy/vendor/bbmap/current/fileIO/ChainBlock.class
bbmapy/vendor/bbmap/current/fileIO/ChainBlock.java
bbmapy/vendor/bbmap/current/fileIO/ChainLine.class
bbmapy/vendor/bbmap/current/fileIO/ChainLine.java
bbmapy/vendor/bbmap/current/fileIO/CompressFiles.class
bbmapy/vendor/bbmap/current/fileIO/CompressFiles.java
bbmapy/vendor/bbmap/current/fileIO/CopyFile$1.class
bbmapy/vendor/bbmap/current/fileIO/CopyFile.class
bbmapy/vendor/bbmap/current/fileIO/CopyFile.java
bbmapy/vendor/bbmap/current/fileIO/CopyFiles.class
bbmapy/vendor/bbmap/current/fileIO/CopyFiles.java
bbmapy/vendor/bbmap/current/fileIO/CopyFiles2.class
bbmapy/vendor/bbmap/current/fileIO/CopyFiles2.java
bbmapy/vendor/bbmap/current/fileIO/FileFormat.class
bbmapy/vendor/bbmap/current/fileIO/FileFormat.java
bbmapy/vendor/bbmap/current/fileIO/FindFiles.class
bbmapy/vendor/bbmap/current/fileIO/FindFiles.java
bbmapy/vendor/bbmap/current/fileIO/GenericTextFile.class
bbmapy/vendor/bbmap/current/fileIO/GenericTextFile.java
bbmapy/vendor/bbmap/current/fileIO/LoadThread.class
bbmapy/vendor/bbmap/current/fileIO/LoadThread.java
bbmapy/vendor/bbmap/current/fileIO/MatrixFile.class
bbmapy/vendor/bbmap/current/fileIO/MatrixFile.java
bbmapy/vendor/bbmap/current/fileIO/OpenFile.class
bbmapy/vendor/bbmap/current/fileIO/OpenFile.java
bbmapy/vendor/bbmap/current/fileIO/PipeThread.class
bbmapy/vendor/bbmap/current/fileIO/PipeThread.java
bbmapy/vendor/bbmap/current/fileIO/QuickFile.class
bbmapy/vendor/bbmap/current/fileIO/QuickFile.java
bbmapy/vendor/bbmap/current/fileIO/ReadWrite$1.class
bbmapy/vendor/bbmap/current/fileIO/ReadWrite$WriteObjectThread.class
bbmapy/vendor/bbmap/current/fileIO/ReadWrite$WriteStringThread.class
bbmapy/vendor/bbmap/current/fileIO/ReadWrite.class
bbmapy/vendor/bbmap/current/fileIO/ReadWrite.java
bbmapy/vendor/bbmap/current/fileIO/SummaryFile$1.class
bbmapy/vendor/bbmap/current/fileIO/SummaryFile.class
bbmapy/vendor/bbmap/current/fileIO/SummaryFile.java
bbmapy/vendor/bbmap/current/fileIO/TextFile.class
bbmapy/vendor/bbmap/current/fileIO/TextFile.java
bbmapy/vendor/bbmap/current/fileIO/TextStreamWriter.class
bbmapy/vendor/bbmap/current/fileIO/TextStreamWriter.java
bbmapy/vendor/bbmap/current/fun/Calc.class
bbmapy/vendor/bbmap/current/fun/Calc.java
bbmapy/vendor/bbmap/current/fun/Chance.class
bbmapy/vendor/bbmap/current/fun/Chance.java
bbmapy/vendor/bbmap/current/fun/Crunch.class
bbmapy/vendor/bbmap/current/fun/Crunch.java
bbmapy/vendor/bbmap/current/fun/DiskBench$ReadThread.class
bbmapy/vendor/bbmap/current/fun/DiskBench$WriteThread.class
bbmapy/vendor/bbmap/current/fun/DiskBench.class
bbmapy/vendor/bbmap/current/fun/DiskBench.java
bbmapy/vendor/bbmap/current/fun/Dongle.class
bbmapy/vendor/bbmap/current/fun/Dongle.java
bbmapy/vendor/bbmap/current/fun/FindPath$Edge.class
bbmapy/vendor/bbmap/current/fun/FindPath$Node.class
bbmapy/vendor/bbmap/current/fun/FindPath$Path.class
bbmapy/vendor/bbmap/current/fun/FindPath.class
bbmapy/vendor/bbmap/current/fun/FindPath.java
bbmapy/vendor/bbmap/current/fun/Foo.class
bbmapy/vendor/bbmap/current/fun/Foo.java
bbmapy/vendor/bbmap/current/fun/Foo2.class
bbmapy/vendor/bbmap/current/fun/Foo2.java
bbmapy/vendor/bbmap/current/fun/Foo3$LongList.class
bbmapy/vendor/bbmap/current/fun/Foo3$Pair.class
bbmapy/vendor/bbmap/current/fun/Foo3.class
bbmapy/vendor/bbmap/current/fun/Foo3.java
bbmapy/vendor/bbmap/current/fun/Foo4$Pair.class
bbmapy/vendor/bbmap/current/fun/Foo4.class
bbmapy/vendor/bbmap/current/fun/Foo4.java
bbmapy/vendor/bbmap/current/fun/Foo5$LongList.class
bbmapy/vendor/bbmap/current/fun/Foo5.class
bbmapy/vendor/bbmap/current/fun/Foo5.java
bbmapy/vendor/bbmap/current/fun/Foo6.class
bbmapy/vendor/bbmap/current/fun/Foo6.java
bbmapy/vendor/bbmap/current/fun/Foo7.class
bbmapy/vendor/bbmap/current/fun/Foo7.java
bbmapy/vendor/bbmap/current/fun/Genetic$Bug.class
bbmapy/vendor/bbmap/current/fun/Genetic.class
bbmapy/vendor/bbmap/current/fun/Genetic.java
bbmapy/vendor/bbmap/current/fun/Life.class
bbmapy/vendor/bbmap/current/fun/Life.java
bbmapy/vendor/bbmap/current/fun/MakeAdjacencyList$1.class
bbmapy/vendor/bbmap/current/fun/MakeAdjacencyList.class
bbmapy/vendor/bbmap/current/fun/MakeAdjacencyList.java
bbmapy/vendor/bbmap/current/fun/Merced$Person.class
bbmapy/vendor/bbmap/current/fun/Merced.class
bbmapy/vendor/bbmap/current/fun/Merced.java
bbmapy/vendor/bbmap/current/fun/PalSim.class
bbmapy/vendor/bbmap/current/fun/PalSim.java
bbmapy/vendor/bbmap/current/fun/Palindrome.class
bbmapy/vendor/bbmap/current/fun/Palindrome.java
bbmapy/vendor/bbmap/current/fun/Palindrome2$Drome.class
bbmapy/vendor/bbmap/current/fun/Palindrome2.class
bbmapy/vendor/bbmap/current/fun/Palindrome2.java
bbmapy/vendor/bbmap/current/fun/ProbShared.class
bbmapy/vendor/bbmap/current/fun/ProbShared.java
bbmapy/vendor/bbmap/current/fun/ProbShared2.class
bbmapy/vendor/bbmap/current/fun/ProbShared2.java
bbmapy/vendor/bbmap/current/fun/ProbShared3.class
bbmapy/vendor/bbmap/current/fun/ProbShared3.java
bbmapy/vendor/bbmap/current/gff/CompareGff.class
bbmapy/vendor/bbmap/current/gff/CompareGff.java
bbmapy/vendor/bbmap/current/gff/CompareGff_old.class
bbmapy/vendor/bbmap/current/gff/CompareGff_old.java
bbmapy/vendor/bbmap/current/gff/CutGff$ProcessThread.class
bbmapy/vendor/bbmap/current/gff/CutGff.class
bbmapy/vendor/bbmap/current/gff/CutGff.java
bbmapy/vendor/bbmap/current/gff/CutGff_ST.class
bbmapy/vendor/bbmap/current/gff/CutGff_ST.java
bbmapy/vendor/bbmap/current/gff/GbffFeature.class
bbmapy/vendor/bbmap/current/gff/GbffFeature.java
bbmapy/vendor/bbmap/current/gff/GbffFile.class
bbmapy/vendor/bbmap/current/gff/GbffFile.java
bbmapy/vendor/bbmap/current/gff/GbffLocus.class
bbmapy/vendor/bbmap/current/gff/GbffLocus.java
bbmapy/vendor/bbmap/current/gff/GffLine.class
bbmapy/vendor/bbmap/current/gff/GffLine.java
bbmapy/vendor/bbmap/current/gff/ParseCrispr.class
bbmapy/vendor/bbmap/current/gff/ParseCrispr.java
bbmapy/vendor/bbmap/current/gff/VcfToGff$1.class
bbmapy/vendor/bbmap/current/gff/VcfToGff.class
bbmapy/vendor/bbmap/current/gff/VcfToGff.java
bbmapy/vendor/bbmap/current/hiseq/AnalyzeFlowCell.class
bbmapy/vendor/bbmap/current/hiseq/AnalyzeFlowCell.java
bbmapy/vendor/bbmap/current/hiseq/BGI2Illumina.class
bbmapy/vendor/bbmap/current/hiseq/BGI2Illumina.java
bbmapy/vendor/bbmap/current/hiseq/BGIHeaderParser.class
bbmapy/vendor/bbmap/current/hiseq/BGIHeaderParser.java
bbmapy/vendor/bbmap/current/hiseq/BGIHeaderParser2.class
bbmapy/vendor/bbmap/current/hiseq/BGIHeaderParser2.java
bbmapy/vendor/bbmap/current/hiseq/CycleTracker.class
bbmapy/vendor/bbmap/current/hiseq/CycleTracker.java
bbmapy/vendor/bbmap/current/hiseq/FlowCell.class
bbmapy/vendor/bbmap/current/hiseq/FlowCell.java
bbmapy/vendor/bbmap/current/hiseq/FlowcellCoordinate.class
bbmapy/vendor/bbmap/current/hiseq/FlowcellCoordinate.java
bbmapy/vendor/bbmap/current/hiseq/IlluminaHeaderParser1.class
bbmapy/vendor/bbmap/current/hiseq/IlluminaHeaderParser1.java
bbmapy/vendor/bbmap/current/hiseq/IlluminaHeaderParser2.class
bbmapy/vendor/bbmap/current/hiseq/IlluminaHeaderParser2.java
bbmapy/vendor/bbmap/current/hiseq/Lane.class
bbmapy/vendor/bbmap/current/hiseq/Lane.java
bbmapy/vendor/bbmap/current/hiseq/MicroTile.class
bbmapy/vendor/bbmap/current/hiseq/MicroTile.java
bbmapy/vendor/bbmap/current/hiseq/PlotFlowCell$WorkerThread.class
bbmapy/vendor/bbmap/current/hiseq/PlotFlowCell.class
bbmapy/vendor/bbmap/current/hiseq/PlotFlowCell.java
bbmapy/vendor/bbmap/current/hiseq/PlotReadPosition.class
bbmapy/vendor/bbmap/current/hiseq/PlotReadPosition.java
bbmapy/vendor/bbmap/current/hiseq/ReadHeaderParser.class
bbmapy/vendor/bbmap/current/hiseq/ReadHeaderParser.java
bbmapy/vendor/bbmap/current/hiseq/Tile.class
bbmapy/vendor/bbmap/current/hiseq/Tile.java
bbmapy/vendor/bbmap/current/hmm/HMMSearchLine.class
bbmapy/vendor/bbmap/current/hmm/HMMSearchLine.java
bbmapy/vendor/bbmap/current/hmm/HMMSearchReport.class
bbmapy/vendor/bbmap/current/hmm/HMMSearchReport.java
bbmapy/vendor/bbmap/current/hmm/ProteinSummary.class
bbmapy/vendor/bbmap/current/hmm/ProteinSummary.java
bbmapy/vendor/bbmap/current/icecream/IceCreamAligner.class
bbmapy/vendor/bbmap/current/icecream/IceCreamAligner.java
bbmapy/vendor/bbmap/current/icecream/IceCreamAlignerJNI.class
bbmapy/vendor/bbmap/current/icecream/IceCreamAlignerJNI.java
bbmapy/vendor/bbmap/current/icecream/IceCreamAlignerJava.class
bbmapy/vendor/bbmap/current/icecream/IceCreamAlignerJava.java
bbmapy/vendor/bbmap/current/icecream/IceCreamFinder$ProcessThread.class
bbmapy/vendor/bbmap/current/icecream/IceCreamFinder.class
bbmapy/vendor/bbmap/current/icecream/IceCreamFinder.java
bbmapy/vendor/bbmap/current/icecream/IceCreamGrader.class
bbmapy/vendor/bbmap/current/icecream/IceCreamGrader.java
bbmapy/vendor/bbmap/current/icecream/IceCreamMaker$ProcessThread.class
bbmapy/vendor/bbmap/current/icecream/IceCreamMaker.class
bbmapy/vendor/bbmap/current/icecream/IceCreamMaker.java
bbmapy/vendor/bbmap/current/icecream/PBHeader.class
bbmapy/vendor/bbmap/current/icecream/PBHeader.java
bbmapy/vendor/bbmap/current/icecream/PolymerTrimmer.class
bbmapy/vendor/bbmap/current/icecream/PolymerTrimmer.java
bbmapy/vendor/bbmap/current/icecream/ReadBuilder.class
bbmapy/vendor/bbmap/current/icecream/ReadBuilder.java
bbmapy/vendor/bbmap/current/icecream/ReformatPacBio$ProcessThread.class
bbmapy/vendor/bbmap/current/icecream/ReformatPacBio.class
bbmapy/vendor/bbmap/current/icecream/ReformatPacBio.java
bbmapy/vendor/bbmap/current/icecream/ZMW.class
bbmapy/vendor/bbmap/current/icecream/ZMW.java
bbmapy/vendor/bbmap/current/icecream/ZMWStreamer.class
bbmapy/vendor/bbmap/current/icecream/ZMWStreamer.java
bbmapy/vendor/bbmap/current/jasper/Comparison.class
bbmapy/vendor/bbmap/current/jasper/Comparison.java
bbmapy/vendor/bbmap/current/jasper/DenseSimilarityMatrix.class
bbmapy/vendor/bbmap/current/jasper/DenseSimilarityMatrix.java
bbmapy/vendor/bbmap/current/jasper/DenseTree.class
bbmapy/vendor/bbmap/current/jasper/DenseTree.java
bbmapy/vendor/bbmap/current/jasper/DenseTreeValidate.class
bbmapy/vendor/bbmap/current/jasper/DenseTreeValidate.java
bbmapy/vendor/bbmap/current/jasper/KmerPosition.class
bbmapy/vendor/bbmap/current/jasper/KmerPosition.java
bbmapy/vendor/bbmap/current/jasper/KmerPosition3.class
bbmapy/vendor/bbmap/current/jasper/KmerPosition3.java
bbmapy/vendor/bbmap/current/jasper/NCBIComparison.class
bbmapy/vendor/bbmap/current/jasper/NCBIComparison.java
bbmapy/vendor/bbmap/current/jasper/NCBISparseSimilarityMatrix.class
bbmapy/vendor/bbmap/current/jasper/NCBISparseSimilarityMatrix.java
bbmapy/vendor/bbmap/current/jasper/NCBISparseTree.class
bbmapy/vendor/bbmap/current/jasper/NCBISparseTree.java
bbmapy/vendor/bbmap/current/jasper/NCBISparseTreeValidate.class
bbmapy/vendor/bbmap/current/jasper/NCBISparseTreeValidate.java
bbmapy/vendor/bbmap/current/jasper/NCBITreeNode.class
bbmapy/vendor/bbmap/current/jasper/NCBITreeNode.java
bbmapy/vendor/bbmap/current/jasper/Organism.class
bbmapy/vendor/bbmap/current/jasper/Organism.java
bbmapy/vendor/bbmap/current/jasper/SimilarityMatrix.class
bbmapy/vendor/bbmap/current/jasper/SimilarityMatrix.java
bbmapy/vendor/bbmap/current/jasper/SparseSimilarityMatrix.class
bbmapy/vendor/bbmap/current/jasper/SparseSimilarityMatrix.java
bbmapy/vendor/bbmap/current/jasper/SparseTree.class
bbmapy/vendor/bbmap/current/jasper/SparseTree.java
bbmapy/vendor/bbmap/current/jasper/SparseTreeValidate.class
bbmapy/vendor/bbmap/current/jasper/SparseTreeValidate.java
bbmapy/vendor/bbmap/current/jasper/TaxCompare.class
bbmapy/vendor/bbmap/current/jasper/TaxCompare.java
bbmapy/vendor/bbmap/current/jasper/TreeNode.class
bbmapy/vendor/bbmap/current/jasper/TreeNode.java
bbmapy/vendor/bbmap/current/jgi/AddAdapters.class
bbmapy/vendor/bbmap/current/jgi/AddAdapters.java
bbmapy/vendor/bbmap/current/jgi/AdjustHomopolymers.class
bbmapy/vendor/bbmap/current/jgi/AdjustHomopolymers.java
bbmapy/vendor/bbmap/current/jgi/AssemblyStats2$Triple.class
bbmapy/vendor/bbmap/current/jgi/AssemblyStats2.class
bbmapy/vendor/bbmap/current/jgi/AssemblyStats2.java
bbmapy/vendor/bbmap/current/jgi/AssemblyStatsWrapper.class
bbmapy/vendor/bbmap/current/jgi/AssemblyStatsWrapper.java
bbmapy/vendor/bbmap/current/jgi/BBDuk$LoadThread.class
bbmapy/vendor/bbmap/current/jgi/BBDuk$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/BBDuk.class
bbmapy/vendor/bbmap/current/jgi/BBDuk.java
bbmapy/vendor/bbmap/current/jgi/BBDuk2$LoadThread.class
bbmapy/vendor/bbmap/current/jgi/BBDuk2$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/BBDuk2.class
bbmapy/vendor/bbmap/current/jgi/BBDuk2.java
bbmapy/vendor/bbmap/current/jgi/BBMask$MaskLowEntropyThread.class
bbmapy/vendor/bbmap/current/jgi/BBMask$MaskRepeatThread.class
bbmapy/vendor/bbmap/current/jgi/BBMask$MaskSamThread.class
bbmapy/vendor/bbmap/current/jgi/BBMask.class
bbmapy/vendor/bbmap/current/jgi/BBMask.java
bbmapy/vendor/bbmap/current/jgi/BBMerge$MateThread.class
bbmapy/vendor/bbmap/current/jgi/BBMerge.class
bbmapy/vendor/bbmap/current/jgi/BBMerge.java
bbmapy/vendor/bbmap/current/jgi/BBMergeOverlapper.class
bbmapy/vendor/bbmap/current/jgi/BBMergeOverlapper.java
bbmapy/vendor/bbmap/current/jgi/BBQC.class
bbmapy/vendor/bbmap/current/jgi/BBQC.java
bbmapy/vendor/bbmap/current/jgi/CalcTrueQuality$CountMatrixSet.class
bbmapy/vendor/bbmap/current/jgi/CalcTrueQuality$GBMatrixSet.class
bbmapy/vendor/bbmap/current/jgi/CalcTrueQuality$Worker.class
bbmapy/vendor/bbmap/current/jgi/CalcTrueQuality.class
bbmapy/vendor/bbmap/current/jgi/CalcTrueQuality.java
bbmapy/vendor/bbmap/current/jgi/CalcUniqueness$Counter.class
bbmapy/vendor/bbmap/current/jgi/CalcUniqueness.class
bbmapy/vendor/bbmap/current/jgi/CalcUniqueness.java
bbmapy/vendor/bbmap/current/jgi/CallPeaks$Peak.class
bbmapy/vendor/bbmap/current/jgi/CallPeaks.class
bbmapy/vendor/bbmap/current/jgi/CallPeaks.java
bbmapy/vendor/bbmap/current/jgi/CheckStrand.class
bbmapy/vendor/bbmap/current/jgi/CheckStrand.java
bbmapy/vendor/bbmap/current/jgi/CheckStrand2$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/CheckStrand2.class
bbmapy/vendor/bbmap/current/jgi/CheckStrand2.java
bbmapy/vendor/bbmap/current/jgi/Consect.class
bbmapy/vendor/bbmap/current/jgi/Consect.java
bbmapy/vendor/bbmap/current/jgi/CountDuplicates$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/CountDuplicates.class
bbmapy/vendor/bbmap/current/jgi/CountDuplicates.java
bbmapy/vendor/bbmap/current/jgi/CountDuplicatesBuffered$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/CountDuplicatesBuffered.class
bbmapy/vendor/bbmap/current/jgi/CountDuplicatesBuffered.java
bbmapy/vendor/bbmap/current/jgi/CountGC$1.class
bbmapy/vendor/bbmap/current/jgi/CountGC.class
bbmapy/vendor/bbmap/current/jgi/CountGC.java
bbmapy/vendor/bbmap/current/jgi/CountUniqueness.class
bbmapy/vendor/bbmap/current/jgi/CountUniqueness.java
bbmapy/vendor/bbmap/current/jgi/CovStatsLine.class
bbmapy/vendor/bbmap/current/jgi/CovStatsLine.java
bbmapy/vendor/bbmap/current/jgi/CoveragePileup.class
bbmapy/vendor/bbmap/current/jgi/CoveragePileup.java
bbmapy/vendor/bbmap/current/jgi/CoveragePileupMT$LoadThread.class
bbmapy/vendor/bbmap/current/jgi/CoveragePileupMT.class
bbmapy/vendor/bbmap/current/jgi/CoveragePileupMT.java
bbmapy/vendor/bbmap/current/jgi/CrisprFinder$1.class
bbmapy/vendor/bbmap/current/jgi/CrisprFinder$Alignment.class
bbmapy/vendor/bbmap/current/jgi/CrisprFinder$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/CrisprFinder.class
bbmapy/vendor/bbmap/current/jgi/CrisprFinder.java
bbmapy/vendor/bbmap/current/jgi/CrossContaminate$Vessel.class
bbmapy/vendor/bbmap/current/jgi/CrossContaminate.class
bbmapy/vendor/bbmap/current/jgi/CrossContaminate.java
bbmapy/vendor/bbmap/current/jgi/CutPrimers.class
bbmapy/vendor/bbmap/current/jgi/CutPrimers.java
bbmapy/vendor/bbmap/current/jgi/DecontaminateByNormalization.class
bbmapy/vendor/bbmap/current/jgi/DecontaminateByNormalization.java
bbmapy/vendor/bbmap/current/jgi/Dedupe$ClusterLengthComparator.class
bbmapy/vendor/bbmap/current/jgi/Dedupe$ClusterThread.class
bbmapy/vendor/bbmap/current/jgi/Dedupe$HashThread.class
bbmapy/vendor/bbmap/current/jgi/Dedupe$MstThread.class
bbmapy/vendor/bbmap/current/jgi/Dedupe$Overlap.class
bbmapy/vendor/bbmap/current/jgi/Dedupe$Unit.class
bbmapy/vendor/bbmap/current/jgi/Dedupe$UnitOffsetComparator.class
bbmapy/vendor/bbmap/current/jgi/Dedupe.class
bbmapy/vendor/bbmap/current/jgi/Dedupe.java
bbmapy/vendor/bbmap/current/jgi/Dedupe2$ClusterLengthComparator.class
bbmapy/vendor/bbmap/current/jgi/Dedupe2$ClusterThread.class
bbmapy/vendor/bbmap/current/jgi/Dedupe2$HashThread.class
bbmapy/vendor/bbmap/current/jgi/Dedupe2$MstThread.class
bbmapy/vendor/bbmap/current/jgi/Dedupe2$Overlap.class
bbmapy/vendor/bbmap/current/jgi/Dedupe2$Unit.class
bbmapy/vendor/bbmap/current/jgi/Dedupe2$UnitOffsetComparator.class
bbmapy/vendor/bbmap/current/jgi/Dedupe2.class
bbmapy/vendor/bbmap/current/jgi/Dedupe2.java
bbmapy/vendor/bbmap/current/jgi/DedupeByMapping$Quad.class
bbmapy/vendor/bbmap/current/jgi/DedupeByMapping.class
bbmapy/vendor/bbmap/current/jgi/DedupeByMapping.java
bbmapy/vendor/bbmap/current/jgi/DedupeProtein$ClusterLengthComparator.class
bbmapy/vendor/bbmap/current/jgi/DedupeProtein$ClusterThread.class
bbmapy/vendor/bbmap/current/jgi/DedupeProtein$HashThread.class
bbmapy/vendor/bbmap/current/jgi/DedupeProtein$MstThread.class
bbmapy/vendor/bbmap/current/jgi/DedupeProtein$Overlap.class
bbmapy/vendor/bbmap/current/jgi/DedupeProtein$Unit.class
bbmapy/vendor/bbmap/current/jgi/DedupeProtein$UnitOffsetComparator.class
bbmapy/vendor/bbmap/current/jgi/DedupeProtein.class
bbmapy/vendor/bbmap/current/jgi/DedupeProtein.java
bbmapy/vendor/bbmap/current/jgi/DemuxByName.class
bbmapy/vendor/bbmap/current/jgi/DemuxByName.java
bbmapy/vendor/bbmap/current/jgi/DemuxByName2.class
bbmapy/vendor/bbmap/current/jgi/DemuxByName2.java
bbmapy/vendor/bbmap/current/jgi/Difference.class
bbmapy/vendor/bbmap/current/jgi/Difference.java
bbmapy/vendor/bbmap/current/jgi/FakeReads.class
bbmapy/vendor/bbmap/current/jgi/FakeReads.java
bbmapy/vendor/bbmap/current/jgi/FilterByCoverage.class
bbmapy/vendor/bbmap/current/jgi/FilterByCoverage.java
bbmapy/vendor/bbmap/current/jgi/FilterBySequence$Code.class
bbmapy/vendor/bbmap/current/jgi/FilterBySequence$LoadThread.class
bbmapy/vendor/bbmap/current/jgi/FilterBySequence$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/FilterBySequence.class
bbmapy/vendor/bbmap/current/jgi/FilterBySequence.java
bbmapy/vendor/bbmap/current/jgi/FilterReadsWithSubs.class
bbmapy/vendor/bbmap/current/jgi/FilterReadsWithSubs.java
bbmapy/vendor/bbmap/current/jgi/FindHiCJunctions.class
bbmapy/vendor/bbmap/current/jgi/FindHiCJunctions.java
bbmapy/vendor/bbmap/current/jgi/FindPrimers$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/FindPrimers.class
bbmapy/vendor/bbmap/current/jgi/FindPrimers.java
bbmapy/vendor/bbmap/current/jgi/FindPrimers_old.class
bbmapy/vendor/bbmap/current/jgi/FindPrimers_old.java
bbmapy/vendor/bbmap/current/jgi/FindString.class
bbmapy/vendor/bbmap/current/jgi/FindString.java
bbmapy/vendor/bbmap/current/jgi/FungalRelease.class
bbmapy/vendor/bbmap/current/jgi/FungalRelease.java
bbmapy/vendor/bbmap/current/jgi/FuseSequence.class
bbmapy/vendor/bbmap/current/jgi/FuseSequence.java
bbmapy/vendor/bbmap/current/jgi/GatherKapaStats$KapaEntry.class
bbmapy/vendor/bbmap/current/jgi/GatherKapaStats$Plate.class
bbmapy/vendor/bbmap/current/jgi/GatherKapaStats$TagData.class
bbmapy/vendor/bbmap/current/jgi/GatherKapaStats$Well.class
bbmapy/vendor/bbmap/current/jgi/GatherKapaStats.class
bbmapy/vendor/bbmap/current/jgi/GatherKapaStats.java
bbmapy/vendor/bbmap/current/jgi/GetReads.class
bbmapy/vendor/bbmap/current/jgi/GetReads.java
bbmapy/vendor/bbmap/current/jgi/GradeMergedReads.class
bbmapy/vendor/bbmap/current/jgi/GradeMergedReads.java
bbmapy/vendor/bbmap/current/jgi/GreedyBarCodeFinder.class
bbmapy/vendor/bbmap/current/jgi/GreedyBarCodeFinder.java
bbmapy/vendor/bbmap/current/jgi/IdentityMatrix$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/IdentityMatrix.class
bbmapy/vendor/bbmap/current/jgi/IdentityMatrix.java
bbmapy/vendor/bbmap/current/jgi/Info.class
bbmapy/vendor/bbmap/current/jgi/Info.java
bbmapy/vendor/bbmap/current/jgi/KExpand.class
bbmapy/vendor/bbmap/current/jgi/KExpand.java
bbmapy/vendor/bbmap/current/jgi/KeepBestCopy.class
bbmapy/vendor/bbmap/current/jgi/KeepBestCopy.java
bbmapy/vendor/bbmap/current/jgi/KmerCountExact$DumpKmersThread.class
bbmapy/vendor/bbmap/current/jgi/KmerCountExact$MakeKhistThread.class
bbmapy/vendor/bbmap/current/jgi/KmerCountExact.class
bbmapy/vendor/bbmap/current/jgi/KmerCountExact.java
bbmapy/vendor/bbmap/current/jgi/KmerCountMulti$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/KmerCountMulti.class
bbmapy/vendor/bbmap/current/jgi/KmerCountMulti.java
bbmapy/vendor/bbmap/current/jgi/KmerCoverage$1.class
bbmapy/vendor/bbmap/current/jgi/KmerCoverage$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/KmerCoverage.class
bbmapy/vendor/bbmap/current/jgi/KmerCoverage.java
bbmapy/vendor/bbmap/current/jgi/KmerFilterSetMaker.class
bbmapy/vendor/bbmap/current/jgi/KmerFilterSetMaker.java
bbmapy/vendor/bbmap/current/jgi/KmerNormalize$1.class
bbmapy/vendor/bbmap/current/jgi/KmerNormalize$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/KmerNormalize.class
bbmapy/vendor/bbmap/current/jgi/KmerNormalize.java
bbmapy/vendor/bbmap/current/jgi/KmerSample.class
bbmapy/vendor/bbmap/current/jgi/KmerSample.java
bbmapy/vendor/bbmap/current/jgi/MakeChimeras.class
bbmapy/vendor/bbmap/current/jgi/MakeChimeras.java
bbmapy/vendor/bbmap/current/jgi/MakeContaminatedGenomes.class
bbmapy/vendor/bbmap/current/jgi/MakeContaminatedGenomes.java
bbmapy/vendor/bbmap/current/jgi/MakeLengthHistogram$1.class
bbmapy/vendor/bbmap/current/jgi/MakeLengthHistogram.class
bbmapy/vendor/bbmap/current/jgi/MakeLengthHistogram.java
bbmapy/vendor/bbmap/current/jgi/MakePolymers.class
bbmapy/vendor/bbmap/current/jgi/MakePolymers.java
bbmapy/vendor/bbmap/current/jgi/MergeBarcodes.class
bbmapy/vendor/bbmap/current/jgi/MergeBarcodes.java
bbmapy/vendor/bbmap/current/jgi/MergeSam.class
bbmapy/vendor/bbmap/current/jgi/MergeSam.java
bbmapy/vendor/bbmap/current/jgi/MutateGenome$SmallVar.class
bbmapy/vendor/bbmap/current/jgi/MutateGenome.class
bbmapy/vendor/bbmap/current/jgi/MutateGenome.java
bbmapy/vendor/bbmap/current/jgi/MutateGenome2$SmallVar.class
bbmapy/vendor/bbmap/current/jgi/MutateGenome2.class
bbmapy/vendor/bbmap/current/jgi/MutateGenome2.java
bbmapy/vendor/bbmap/current/jgi/Orf.class
bbmapy/vendor/bbmap/current/jgi/Orf.java
bbmapy/vendor/bbmap/current/jgi/PartitionReads$Partition.class
bbmapy/vendor/bbmap/current/jgi/PartitionReads.class
bbmapy/vendor/bbmap/current/jgi/PartitionReads.java
bbmapy/vendor/bbmap/current/jgi/PhylipToFasta.class
bbmapy/vendor/bbmap/current/jgi/PhylipToFasta.java
bbmapy/vendor/bbmap/current/jgi/RQCFilter2.class
bbmapy/vendor/bbmap/current/jgi/RQCFilter2.java
bbmapy/vendor/bbmap/current/jgi/RQCFilterStats.class
bbmapy/vendor/bbmap/current/jgi/RQCFilterStats.java
bbmapy/vendor/bbmap/current/jgi/RandomGenome.class
bbmapy/vendor/bbmap/current/jgi/RandomGenome.java
bbmapy/vendor/bbmap/current/jgi/ReadKmerDepthDistribution$1.class
bbmapy/vendor/bbmap/current/jgi/ReadKmerDepthDistribution$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/ReadKmerDepthDistribution.class
bbmapy/vendor/bbmap/current/jgi/ReadKmerDepthDistribution.java
bbmapy/vendor/bbmap/current/jgi/RedirectTest.class
bbmapy/vendor/bbmap/current/jgi/RedirectTest.java
bbmapy/vendor/bbmap/current/jgi/ReformatReads.class
bbmapy/vendor/bbmap/current/jgi/ReformatReads.java
bbmapy/vendor/bbmap/current/jgi/RemapQuality.class
bbmapy/vendor/bbmap/current/jgi/RemapQuality.java
bbmapy/vendor/bbmap/current/jgi/RemoveBadBarcodes.class
bbmapy/vendor/bbmap/current/jgi/RemoveBadBarcodes.java
bbmapy/vendor/bbmap/current/jgi/RenameReads.class
bbmapy/vendor/bbmap/current/jgi/RenameReads.java
bbmapy/vendor/bbmap/current/jgi/ReplaceHeaders.class
bbmapy/vendor/bbmap/current/jgi/ReplaceHeaders.java
bbmapy/vendor/bbmap/current/jgi/RepresentativeSet$Edge.class
bbmapy/vendor/bbmap/current/jgi/RepresentativeSet$Node.class
bbmapy/vendor/bbmap/current/jgi/RepresentativeSet.class
bbmapy/vendor/bbmap/current/jgi/RepresentativeSet.java
bbmapy/vendor/bbmap/current/jgi/SamToEst$1.class
bbmapy/vendor/bbmap/current/jgi/SamToEst$EST.class
bbmapy/vendor/bbmap/current/jgi/SamToEst.class
bbmapy/vendor/bbmap/current/jgi/SamToEst.java
bbmapy/vendor/bbmap/current/jgi/Seal$LoadThread.class
bbmapy/vendor/bbmap/current/jgi/Seal$ProcessThread.class
bbmapy/vendor/bbmap/current/jgi/Seal.class
bbmapy/vendor/bbmap/current/jgi/Seal.java
bbmapy/vendor/bbmap/current/jgi/SealRefInfo.class
bbmapy/vendor/bbmap/current/jgi/SealRefInfo.java
bbmapy/vendor/bbmap/current/jgi/Shred.class
bbmapy/vendor/bbmap/current/jgi/Shred.java
bbmapy/vendor/bbmap/current/jgi/SmallKmerFrequency$CountComparator.class
bbmapy/vendor/bbmap/current/jgi/SmallKmerFrequency$Kmer.class
bbmapy/vendor/bbmap/current/jgi/SmallKmerFrequency$NumComparator.class
bbmapy/vendor/bbmap/current/jgi/SmallKmerFrequency.class
bbmapy/vendor/bbmap/current/jgi/SmallKmerFrequency.java
bbmapy/vendor/bbmap/current/jgi/SplitNexteraLMP.class
bbmapy/vendor/bbmap/current/jgi/SplitNexteraLMP.java
bbmapy/vendor/bbmap/current/jgi/SplitPairsAndSingles.class
bbmapy/vendor/bbmap/current/jgi/SplitPairsAndSingles.java
bbmapy/vendor/bbmap/current/jgi/SplitSam4Way.class
bbmapy/vendor/bbmap/current/jgi/SplitSam4Way.java
bbmapy/vendor/bbmap/current/jgi/SplitSam6Way.class
bbmapy/vendor/bbmap/current/jgi/SplitSam6Way.java
bbmapy/vendor/bbmap/current/jgi/SplitSamFile.class
bbmapy/vendor/bbmap/current/jgi/SplitSamFile.java
bbmapy/vendor/bbmap/current/jgi/StringCount.class
bbmapy/vendor/bbmap/current/jgi/StringCount.java
bbmapy/vendor/bbmap/current/jgi/SynthMDA.class
bbmapy/vendor/bbmap/current/jgi/SynthMDA.java
bbmapy/vendor/bbmap/current/jgi/TestFilesystem$WriteThread.class
bbmapy/vendor/bbmap/current/jgi/TestFilesystem.class
bbmapy/vendor/bbmap/current/jgi/TestFilesystem.java
bbmapy/vendor/bbmap/current/jgi/TestFormat$TestThread.class
bbmapy/vendor/bbmap/current/jgi/TestFormat.class
bbmapy/vendor/bbmap/current/jgi/TestFormat.java
bbmapy/vendor/bbmap/current/jgi/TetramerFrequencies$Line.class
bbmapy/vendor/bbmap/current/jgi/TetramerFrequencies$PrintThread.class
bbmapy/vendor/bbmap/current/jgi/TetramerFrequencies.class
bbmapy/vendor/bbmap/current/jgi/TetramerFrequencies.java
bbmapy/vendor/bbmap/current/jgi/TranslateSixFrames.class
bbmapy/vendor/bbmap/current/jgi/TranslateSixFrames.java
bbmapy/vendor/bbmap/current/jgi/UnicodeToAscii.class
bbmapy/vendor/bbmap/current/jgi/UnicodeToAscii.java
bbmapy/vendor/bbmap/current/jgi/Unzip.class
bbmapy/vendor/bbmap/current/jgi/Unzip.java
bbmapy/vendor/bbmap/current/json/JsonLiteral.class
bbmapy/vendor/bbmap/current/json/JsonLiteral.java
bbmapy/vendor/bbmap/current/json/JsonObject.class
bbmapy/vendor/bbmap/current/json/JsonObject.java
bbmapy/vendor/bbmap/current/json/JsonParser.class
bbmapy/vendor/bbmap/current/json/JsonParser.java
bbmapy/vendor/bbmap/current/kmer/AbstractKmerTable$AllocThread.class
bbmapy/vendor/bbmap/current/kmer/AbstractKmerTable.class
bbmapy/vendor/bbmap/current/kmer/AbstractKmerTable.java
bbmapy/vendor/bbmap/current/kmer/AbstractKmerTableSet.class
bbmapy/vendor/bbmap/current/kmer/AbstractKmerTableSet.java
bbmapy/vendor/bbmap/current/kmer/DumpThread.class
bbmapy/vendor/bbmap/current/kmer/DumpThread.java
bbmapy/vendor/bbmap/current/kmer/HashArray.class
bbmapy/vendor/bbmap/current/kmer/HashArray.java
bbmapy/vendor/bbmap/current/kmer/HashArray1D$Walker1D.class
bbmapy/vendor/bbmap/current/kmer/HashArray1D.class
bbmapy/vendor/bbmap/current/kmer/HashArray1D.java
bbmapy/vendor/bbmap/current/kmer/HashArray2D.class
bbmapy/vendor/bbmap/current/kmer/HashArray2D.java
bbmapy/vendor/bbmap/current/kmer/HashArrayHybrid.class
bbmapy/vendor/bbmap/current/kmer/HashArrayHybrid.java
bbmapy/vendor/bbmap/current/kmer/HashArrayHybridFast.class
bbmapy/vendor/bbmap/current/kmer/HashArrayHybridFast.java
bbmapy/vendor/bbmap/current/kmer/HashBuffer.class
bbmapy/vendor/bbmap/current/kmer/HashBuffer.java
bbmapy/vendor/bbmap/current/kmer/HashForest.class
bbmapy/vendor/bbmap/current/kmer/HashForest.java
bbmapy/vendor/bbmap/current/kmer/HistogramMaker$FillThread.class
bbmapy/vendor/bbmap/current/kmer/HistogramMaker.class
bbmapy/vendor/bbmap/current/kmer/HistogramMaker.java
bbmapy/vendor/bbmap/current/kmer/KmerBuffer.class
bbmapy/vendor/bbmap/current/kmer/KmerBuffer.java
bbmapy/vendor/bbmap/current/kmer/KmerLink.class
bbmapy/vendor/bbmap/current/kmer/KmerLink.java
bbmapy/vendor/bbmap/current/kmer/KmerNode.class
bbmapy/vendor/bbmap/current/kmer/KmerNode.java
bbmapy/vendor/bbmap/current/kmer/KmerNode1D.class
bbmapy/vendor/bbmap/current/kmer/KmerNode1D.java
bbmapy/vendor/bbmap/current/kmer/KmerNode2D.class
bbmapy/vendor/bbmap/current/kmer/KmerNode2D.java
bbmapy/vendor/bbmap/current/kmer/KmerTable.class
bbmapy/vendor/bbmap/current/kmer/KmerTable.java
bbmapy/vendor/bbmap/current/kmer/KmerTableSet$LoadThread.class
bbmapy/vendor/bbmap/current/kmer/KmerTableSet$WalkerKST.class
bbmapy/vendor/bbmap/current/kmer/KmerTableSet.class
bbmapy/vendor/bbmap/current/kmer/KmerTableSet.java
bbmapy/vendor/bbmap/current/kmer/OwnershipThread.class
bbmapy/vendor/bbmap/current/kmer/OwnershipThread.java
bbmapy/vendor/bbmap/current/kmer/ScheduleMaker.class
bbmapy/vendor/bbmap/current/kmer/ScheduleMaker.java
bbmapy/vendor/bbmap/current/kmer/SimpleKmerTable.class
bbmapy/vendor/bbmap/current/kmer/SimpleKmerTable.java
bbmapy/vendor/bbmap/current/kmer/TableLoaderLockFree$LoadThread.class
bbmapy/vendor/bbmap/current/kmer/TableLoaderLockFree.class
bbmapy/vendor/bbmap/current/kmer/TableLoaderLockFree.java
bbmapy/vendor/bbmap/current/kmer/TableReader.class
bbmapy/vendor/bbmap/current/kmer/TableReader.java
bbmapy/vendor/bbmap/current/kmer/Walker.class
bbmapy/vendor/bbmap/current/kmer/Walker.java
bbmapy/vendor/bbmap/current/ml/Bell.class
bbmapy/vendor/bbmap/current/ml/Bell.java
bbmapy/vendor/bbmap/current/ml/Cell.class
bbmapy/vendor/bbmap/current/ml/Cell.java
bbmapy/vendor/bbmap/current/ml/CellNet.class
bbmapy/vendor/bbmap/current/ml/CellNet.java
bbmapy/vendor/bbmap/current/ml/CellNetParser.class
bbmapy/vendor/bbmap/current/ml/CellNetParser.java
bbmapy/vendor/bbmap/current/ml/CellNetReverseComparator.class
bbmapy/vendor/bbmap/current/ml/CellNetReverseComparator.java
bbmapy/vendor/bbmap/current/ml/DataLoader$Pair.class
bbmapy/vendor/bbmap/current/ml/DataLoader.class
bbmapy/vendor/bbmap/current/ml/DataLoader.java
bbmapy/vendor/bbmap/current/ml/ExtendedMSig.class
bbmapy/vendor/bbmap/current/ml/ExtendedMSig.java
bbmapy/vendor/bbmap/current/ml/ExtendedSigmoid.class
bbmapy/vendor/bbmap/current/ml/ExtendedSigmoid.java
bbmapy/vendor/bbmap/current/ml/Function.class
bbmapy/vendor/bbmap/current/ml/Function.java
bbmapy/vendor/bbmap/current/ml/Functions.class
bbmapy/vendor/bbmap/current/ml/Functions.java
bbmapy/vendor/bbmap/current/ml/JobData.class
bbmapy/vendor/bbmap/current/ml/JobData.java
bbmapy/vendor/bbmap/current/ml/JobResults.class
bbmapy/vendor/bbmap/current/ml/JobResults.java
bbmapy/vendor/bbmap/current/ml/MSig.class
bbmapy/vendor/bbmap/current/ml/MSig.java
bbmapy/vendor/bbmap/current/ml/Matrix.class
bbmapy/vendor/bbmap/current/ml/Matrix.java
bbmapy/vendor/bbmap/current/ml/NetFilter$ProcessThread.class
bbmapy/vendor/bbmap/current/ml/NetFilter.class
bbmapy/vendor/bbmap/current/ml/NetFilter.java
bbmapy/vendor/bbmap/current/ml/ProcessBBMergeHeaders$Header.class
bbmapy/vendor/bbmap/current/ml/ProcessBBMergeHeaders.class
bbmapy/vendor/bbmap/current/ml/ProcessBBMergeHeaders.java
bbmapy/vendor/bbmap/current/ml/Profiler.class
bbmapy/vendor/bbmap/current/ml/Profiler.java
bbmapy/vendor/bbmap/current/ml/RSLog.class
bbmapy/vendor/bbmap/current/ml/RSLog.java
bbmapy/vendor/bbmap/current/ml/Sample.class
bbmapy/vendor/bbmap/current/ml/Sample.java
bbmapy/vendor/bbmap/current/ml/SampleErrorComparator.class
bbmapy/vendor/bbmap/current/ml/SampleErrorComparator.java
bbmapy/vendor/bbmap/current/ml/SampleSet.class
bbmapy/vendor/bbmap/current/ml/SampleSet.java
bbmapy/vendor/bbmap/current/ml/SampleValueComparator.class
bbmapy/vendor/bbmap/current/ml/SampleValueComparator.java
bbmapy/vendor/bbmap/current/ml/ScannerThread$LaunchThread.class
bbmapy/vendor/bbmap/current/ml/ScannerThread.class
bbmapy/vendor/bbmap/current/ml/ScannerThread.java
bbmapy/vendor/bbmap/current/ml/ScoreSequence.class
bbmapy/vendor/bbmap/current/ml/ScoreSequence.java
bbmapy/vendor/bbmap/current/ml/Seed.class
bbmapy/vendor/bbmap/current/ml/Seed.java
bbmapy/vendor/bbmap/current/ml/SequenceToVector$1.class
bbmapy/vendor/bbmap/current/ml/SequenceToVector.class
bbmapy/vendor/bbmap/current/ml/SequenceToVector.java
bbmapy/vendor/bbmap/current/ml/Sigmoid.class
bbmapy/vendor/bbmap/current/ml/Sigmoid.java
bbmapy/vendor/bbmap/current/ml/Source.class
bbmapy/vendor/bbmap/current/ml/Source.java
bbmapy/vendor/bbmap/current/ml/Status.class
bbmapy/vendor/bbmap/current/ml/Status.java
bbmapy/vendor/bbmap/current/ml/Subset.class
bbmapy/vendor/bbmap/current/ml/Subset.java
bbmapy/vendor/bbmap/current/ml/Swish.class
bbmapy/vendor/bbmap/current/ml/Swish.java
bbmapy/vendor/bbmap/current/ml/Tanh.class
bbmapy/vendor/bbmap/current/ml/Tanh.java
bbmapy/vendor/bbmap/current/ml/Trainer.class
bbmapy/vendor/bbmap/current/ml/Trainer.java
bbmapy/vendor/bbmap/current/ml/TrainerThread$LaunchThread.class
bbmapy/vendor/bbmap/current/ml/TrainerThread.class
bbmapy/vendor/bbmap/current/ml/TrainerThread.java
bbmapy/vendor/bbmap/current/ml/WorkerThread.class
bbmapy/vendor/bbmap/current/ml/WorkerThread.java
bbmapy/vendor/bbmap/current/pacbio/CalcCoverageFromSites$1.class
bbmapy/vendor/bbmap/current/pacbio/CalcCoverageFromSites.class
bbmapy/vendor/bbmap/current/pacbio/CalcCoverageFromSites.java
bbmapy/vendor/bbmap/current/pacbio/GenerateMultiChrom.class
bbmapy/vendor/bbmap/current/pacbio/GenerateMultiChrom.java
bbmapy/vendor/bbmap/current/pacbio/MakePacBioScript.class
bbmapy/vendor/bbmap/current/pacbio/MakePacBioScript.java
bbmapy/vendor/bbmap/current/pacbio/MergeFastaContigs$1.class
bbmapy/vendor/bbmap/current/pacbio/MergeFastaContigs.class
bbmapy/vendor/bbmap/current/pacbio/MergeFastaContigs.java
bbmapy/vendor/bbmap/current/pacbio/MergeReadsAndGenome$1.class
bbmapy/vendor/bbmap/current/pacbio/MergeReadsAndGenome.class
bbmapy/vendor/bbmap/current/pacbio/MergeReadsAndGenome.java
bbmapy/vendor/bbmap/current/pacbio/PartitionFastaFile.class
bbmapy/vendor/bbmap/current/pacbio/PartitionFastaFile.java
bbmapy/vendor/bbmap/current/pacbio/PartitionReads$1.class
bbmapy/vendor/bbmap/current/pacbio/PartitionReads.class
bbmapy/vendor/bbmap/current/pacbio/PartitionReads.java
bbmapy/vendor/bbmap/current/pacbio/ProcessStackedSitesNormalized$1.class
bbmapy/vendor/bbmap/current/pacbio/ProcessStackedSitesNormalized$Buffer.class
bbmapy/vendor/bbmap/current/pacbio/ProcessStackedSitesNormalized$Ssra.class
bbmapy/vendor/bbmap/current/pacbio/ProcessStackedSitesNormalized.class
bbmapy/vendor/bbmap/current/pacbio/ProcessStackedSitesNormalized.java
bbmapy/vendor/bbmap/current/pacbio/RemoveAdapters2$1.class
bbmapy/vendor/bbmap/current/pacbio/RemoveAdapters2$ProcessThread.class
bbmapy/vendor/bbmap/current/pacbio/RemoveAdapters2.class
bbmapy/vendor/bbmap/current/pacbio/RemoveAdapters2.java
bbmapy/vendor/bbmap/current/pacbio/RemoveAdapters3$ProcessThread.class
bbmapy/vendor/bbmap/current/pacbio/RemoveAdapters3.class
bbmapy/vendor/bbmap/current/pacbio/RemoveAdapters3.java
bbmapy/vendor/bbmap/current/pacbio/SiteR.class
bbmapy/vendor/bbmap/current/pacbio/SiteR.java
bbmapy/vendor/bbmap/current/pacbio/SortSites$1.class
bbmapy/vendor/bbmap/current/pacbio/SortSites.class
bbmapy/vendor/bbmap/current/pacbio/SortSites.java
bbmapy/vendor/bbmap/current/pacbio/SplitOffPerfectContigs$1.class
bbmapy/vendor/bbmap/current/pacbio/SplitOffPerfectContigs.class
bbmapy/vendor/bbmap/current/pacbio/SplitOffPerfectContigs.java
bbmapy/vendor/bbmap/current/pacbio/StackSites$1.class
bbmapy/vendor/bbmap/current/pacbio/StackSites$Glob.class
bbmapy/vendor/bbmap/current/pacbio/StackSites.class
bbmapy/vendor/bbmap/current/pacbio/StackSites.java
bbmapy/vendor/bbmap/current/pacbio/StackSites2$1.class
bbmapy/vendor/bbmap/current/pacbio/StackSites2$Glob.class
bbmapy/vendor/bbmap/current/pacbio/StackSites2.class
bbmapy/vendor/bbmap/current/pacbio/StackSites2.java
bbmapy/vendor/bbmap/current/prok/AnalyzeGenes$FileThread.class
bbmapy/vendor/bbmap/current/prok/AnalyzeGenes.class
bbmapy/vendor/bbmap/current/prok/AnalyzeGenes.java
bbmapy/vendor/bbmap/current/prok/CallGenes$ProcessThread.class
bbmapy/vendor/bbmap/current/prok/CallGenes.class
bbmapy/vendor/bbmap/current/prok/CallGenes.java
bbmapy/vendor/bbmap/current/prok/FetchProks$ProcessThread.class
bbmapy/vendor/bbmap/current/prok/FetchProks$Stats.class
bbmapy/vendor/bbmap/current/prok/FetchProks.class
bbmapy/vendor/bbmap/current/prok/FetchProks.java
bbmapy/vendor/bbmap/current/prok/FilterSilva.class
bbmapy/vendor/bbmap/current/prok/FilterSilva.java
bbmapy/vendor/bbmap/current/prok/FrameStats.class
bbmapy/vendor/bbmap/current/prok/FrameStats.java
bbmapy/vendor/bbmap/current/prok/GeneCaller.class
bbmapy/vendor/bbmap/current/prok/GeneCaller.java
bbmapy/vendor/bbmap/current/prok/GeneModel.class
bbmapy/vendor/bbmap/current/prok/GeneModel.java
bbmapy/vendor/bbmap/current/prok/GeneModelParser.class
bbmapy/vendor/bbmap/current/prok/GeneModelParser.java
bbmapy/vendor/bbmap/current/prok/MergeRibo$ListComparator.class
bbmapy/vendor/bbmap/current/prok/MergeRibo$ProcessThread.class
bbmapy/vendor/bbmap/current/prok/MergeRibo$Ribo.class
bbmapy/vendor/bbmap/current/prok/MergeRibo.class
bbmapy/vendor/bbmap/current/prok/MergeRibo.java
bbmapy/vendor/bbmap/current/prok/MergeRibo_Fast$ProcessThread.class
bbmapy/vendor/bbmap/current/prok/MergeRibo_Fast$Ribo.class
bbmapy/vendor/bbmap/current/prok/MergeRibo_Fast.class
bbmapy/vendor/bbmap/current/prok/MergeRibo_Fast.java
bbmapy/vendor/bbmap/current/prok/Orf.class
bbmapy/vendor/bbmap/current/prok/Orf.java
bbmapy/vendor/bbmap/current/prok/PFeature$FeatureComparatorScore.class
bbmapy/vendor/bbmap/current/prok/PFeature.class
bbmapy/vendor/bbmap/current/prok/PFeature.java
bbmapy/vendor/bbmap/current/prok/PGMTools$1.class
bbmapy/vendor/bbmap/current/prok/PGMTools.class
bbmapy/vendor/bbmap/current/prok/PGMTools.java
bbmapy/vendor/bbmap/current/prok/ProkObject.class
bbmapy/vendor/bbmap/current/prok/ProkObject.java
bbmapy/vendor/bbmap/current/prok/RiboMaker$ProcessThread.class
bbmapy/vendor/bbmap/current/prok/RiboMaker.class
bbmapy/vendor/bbmap/current/prok/RiboMaker.java
bbmapy/vendor/bbmap/current/prok/ScafData.class
bbmapy/vendor/bbmap/current/prok/ScafData.java
bbmapy/vendor/bbmap/current/prok/ScoreTracker.class
bbmapy/vendor/bbmap/current/prok/ScoreTracker.java
bbmapy/vendor/bbmap/current/prok/SplitRibo$ProcessThread.class
bbmapy/vendor/bbmap/current/prok/SplitRibo.class
bbmapy/vendor/bbmap/current/prok/SplitRibo.java
bbmapy/vendor/bbmap/current/prok/StatsContainer.class
bbmapy/vendor/bbmap/current/prok/StatsContainer.java
bbmapy/vendor/bbmap/current/repeat/Palindrome.class
bbmapy/vendor/bbmap/current/repeat/Palindrome.java
bbmapy/vendor/bbmap/current/repeat/PalindromeFinder.class
bbmapy/vendor/bbmap/current/repeat/PalindromeFinder.java
bbmapy/vendor/bbmap/current/repeat/Repeat$PosComparator.class
bbmapy/vendor/bbmap/current/repeat/Repeat$PosComparator2.class
bbmapy/vendor/bbmap/current/repeat/Repeat.class
bbmapy/vendor/bbmap/current/repeat/Repeat.java
bbmapy/vendor/bbmap/current/repeat/RepeatFinder$ProcessThread.class
bbmapy/vendor/bbmap/current/repeat/RepeatFinder.class
bbmapy/vendor/bbmap/current/repeat/RepeatFinder.java
bbmapy/vendor/bbmap/current/repeat/RepeatSet.class
bbmapy/vendor/bbmap/current/repeat/RepeatSet.java
bbmapy/vendor/bbmap/current/server/PercentEncoding.class
bbmapy/vendor/bbmap/current/server/PercentEncoding.java
bbmapy/vendor/bbmap/current/server/ServerTools.class
bbmapy/vendor/bbmap/current/server/ServerTools.java
bbmapy/vendor/bbmap/current/server/SimpleHttpServer$GetHandler.class
bbmapy/vendor/bbmap/current/server/SimpleHttpServer.class
bbmapy/vendor/bbmap/current/server/SimpleHttpServer.java
bbmapy/vendor/bbmap/current/shared/Colors.class
bbmapy/vendor/bbmap/current/shared/Colors.java
bbmapy/vendor/bbmap/current/shared/KillSwitch.class
bbmapy/vendor/bbmap/current/shared/KillSwitch.java
bbmapy/vendor/bbmap/current/shared/LineParser.class
bbmapy/vendor/bbmap/current/shared/LineParser.java
bbmapy/vendor/bbmap/current/shared/LineParser1.class
bbmapy/vendor/bbmap/current/shared/LineParser1.java
bbmapy/vendor/bbmap/current/shared/LineParser2.class
bbmapy/vendor/bbmap/current/shared/LineParser2.java
bbmapy/vendor/bbmap/current/shared/LineParserS.class
bbmapy/vendor/bbmap/current/shared/LineParserS.java
bbmapy/vendor/bbmap/current/shared/LineParserS1.class
bbmapy/vendor/bbmap/current/shared/LineParserS1.java
bbmapy/vendor/bbmap/current/shared/LineParserS2.class
bbmapy/vendor/bbmap/current/shared/LineParserS2.java
bbmapy/vendor/bbmap/current/shared/LineParserS3.class
bbmapy/vendor/bbmap/current/shared/LineParserS3.java
bbmapy/vendor/bbmap/current/shared/LineParserS4.class
bbmapy/vendor/bbmap/current/shared/LineParserS4.java
bbmapy/vendor/bbmap/current/shared/LineParserS4Reverse.class
bbmapy/vendor/bbmap/current/shared/LineParserS4Reverse.java
bbmapy/vendor/bbmap/current/shared/LineParserSimple.class
bbmapy/vendor/bbmap/current/shared/LineParserSimple.java
bbmapy/vendor/bbmap/current/shared/MetadataWriter.class
bbmapy/vendor/bbmap/current/shared/MetadataWriter.java
bbmapy/vendor/bbmap/current/shared/Parse.class
bbmapy/vendor/bbmap/current/shared/Parse.java
bbmapy/vendor/bbmap/current/shared/Parser.class
bbmapy/vendor/bbmap/current/shared/Parser.java
bbmapy/vendor/bbmap/current/shared/PreParser.class
bbmapy/vendor/bbmap/current/shared/PreParser.java
bbmapy/vendor/bbmap/current/shared/Primes.class
bbmapy/vendor/bbmap/current/shared/Primes.java
bbmapy/vendor/bbmap/current/shared/SIMD.class
bbmapy/vendor/bbmap/current/shared/SIMD.java
bbmapy/vendor/bbmap/current/shared/Shared.class
bbmapy/vendor/bbmap/current/shared/Shared.java
bbmapy/vendor/bbmap/current/shared/Timer.class
bbmapy/vendor/bbmap/current/shared/Timer.java
bbmapy/vendor/bbmap/current/shared/Tools$1.class
bbmapy/vendor/bbmap/current/shared/Tools.class
bbmapy/vendor/bbmap/current/shared/Tools.java
bbmapy/vendor/bbmap/current/shared/TrimRead.class
bbmapy/vendor/bbmap/current/shared/TrimRead.java
bbmapy/vendor/bbmap/current/shared/Vector.class
bbmapy/vendor/bbmap/current/shared/Vector.java
bbmapy/vendor/bbmap/current/sketch/AddSSU$SketchHeader.class
bbmapy/vendor/bbmap/current/sketch/AddSSU.class
bbmapy/vendor/bbmap/current/sketch/AddSSU.java
bbmapy/vendor/bbmap/current/sketch/AlignmentJob.class
bbmapy/vendor/bbmap/current/sketch/AlignmentJob.java
bbmapy/vendor/bbmap/current/sketch/AlignmentThreadPool$AlignmentThread.class
bbmapy/vendor/bbmap/current/sketch/AlignmentThreadPool.class
bbmapy/vendor/bbmap/current/sketch/AlignmentThreadPool.java
bbmapy/vendor/bbmap/current/sketch/AnalyzeSketchResults$SSUThread.class
bbmapy/vendor/bbmap/current/sketch/AnalyzeSketchResults.class
bbmapy/vendor/bbmap/current/sketch/AnalyzeSketchResults.java
bbmapy/vendor/bbmap/current/sketch/Blacklist.class
bbmapy/vendor/bbmap/current/sketch/Blacklist.java
bbmapy/vendor/bbmap/current/sketch/BlacklistMaker$ProcessThread.class
bbmapy/vendor/bbmap/current/sketch/BlacklistMaker.class
bbmapy/vendor/bbmap/current/sketch/BlacklistMaker.java
bbmapy/vendor/bbmap/current/sketch/BlacklistMaker2$KeyPair.class
bbmapy/vendor/bbmap/current/sketch/BlacklistMaker2$ProcessThread.class
bbmapy/vendor/bbmap/current/sketch/BlacklistMaker2.class
bbmapy/vendor/bbmap/current/sketch/BlacklistMaker2.java
bbmapy/vendor/bbmap/current/sketch/CompareBuffer.class
bbmapy/vendor/bbmap/current/sketch/CompareBuffer.java
bbmapy/vendor/bbmap/current/sketch/CompareSSU$ProcessThread.class
bbmapy/vendor/bbmap/current/sketch/CompareSSU.class
bbmapy/vendor/bbmap/current/sketch/CompareSSU.java
bbmapy/vendor/bbmap/current/sketch/CompareSketch$CompareThread.class
bbmapy/vendor/bbmap/current/sketch/CompareSketch.class
bbmapy/vendor/bbmap/current/sketch/CompareSketch.java
bbmapy/vendor/bbmap/current/sketch/Comparison$Depth2Comparator.class
bbmapy/vendor/bbmap/current/sketch/Comparison$DepthComparator.class
bbmapy/vendor/bbmap/current/sketch/Comparison$HitsComparator.class
bbmapy/vendor/bbmap/current/sketch/Comparison$KIDComparator.class
bbmapy/vendor/bbmap/current/sketch/Comparison$SSUComparator.class
bbmapy/vendor/bbmap/current/sketch/Comparison$ScoreComparator.class
bbmapy/vendor/bbmap/current/sketch/Comparison$VolumeComparator.class
bbmapy/vendor/bbmap/current/sketch/Comparison$WKIDComparator.class
bbmapy/vendor/bbmap/current/sketch/Comparison.class
bbmapy/vendor/bbmap/current/sketch/Comparison.java
bbmapy/vendor/bbmap/current/sketch/DisplayParams.class
bbmapy/vendor/bbmap/current/sketch/DisplayParams.java
bbmapy/vendor/bbmap/current/sketch/GlocalAligner.class
bbmapy/vendor/bbmap/current/sketch/GlocalAligner.java
bbmapy/vendor/bbmap/current/sketch/InvertKey.class
bbmapy/vendor/bbmap/current/sketch/InvertKey.java
bbmapy/vendor/bbmap/current/sketch/KmerLimit$ProcessThread.class
bbmapy/vendor/bbmap/current/sketch/KmerLimit.class
bbmapy/vendor/bbmap/current/sketch/KmerLimit.java
bbmapy/vendor/bbmap/current/sketch/KmerLimit2$ProcessThread.class
bbmapy/vendor/bbmap/current/sketch/KmerLimit2.class
bbmapy/vendor/bbmap/current/sketch/KmerLimit2.java
bbmapy/vendor/bbmap/current/sketch/MergeSketch.class
bbmapy/vendor/bbmap/current/sketch/MergeSketch.java
bbmapy/vendor/bbmap/current/sketch/Record.class
bbmapy/vendor/bbmap/current/sketch/Record.java
bbmapy/vendor/bbmap/current/sketch/RecordSet.class
bbmapy/vendor/bbmap/current/sketch/RecordSet.java
bbmapy/vendor/bbmap/current/sketch/ResultLineParser.class
bbmapy/vendor/bbmap/current/sketch/ResultLineParser.java
bbmapy/vendor/bbmap/current/sketch/SSUMap.class
bbmapy/vendor/bbmap/current/sketch/SSUMap.java
bbmapy/vendor/bbmap/current/sketch/SendSketch.class
bbmapy/vendor/bbmap/current/sketch/SendSketch.java
bbmapy/vendor/bbmap/current/sketch/Sketch.class
bbmapy/vendor/bbmap/current/sketch/Sketch.java
bbmapy/vendor/bbmap/current/sketch/SketchHeap.class
bbmapy/vendor/bbmap/current/sketch/SketchHeap.java
bbmapy/vendor/bbmap/current/sketch/SketchIdComparator.class
bbmapy/vendor/bbmap/current/sketch/SketchIdComparator.java
bbmapy/vendor/bbmap/current/sketch/SketchIndex$IndexThread.class
bbmapy/vendor/bbmap/current/sketch/SketchIndex.class
bbmapy/vendor/bbmap/current/sketch/SketchIndex.java
bbmapy/vendor/bbmap/current/sketch/SketchMaker$ProcessThread.class
bbmapy/vendor/bbmap/current/sketch/SketchMaker$WriteThread.class
bbmapy/vendor/bbmap/current/sketch/SketchMaker.class
bbmapy/vendor/bbmap/current/sketch/SketchMaker.java
bbmapy/vendor/bbmap/current/sketch/SketchMakerMini.class
bbmapy/vendor/bbmap/current/sketch/SketchMakerMini.java
bbmapy/vendor/bbmap/current/sketch/SketchObject.class
bbmapy/vendor/bbmap/current/sketch/SketchObject.java
bbmapy/vendor/bbmap/current/sketch/SketchResults.class
bbmapy/vendor/bbmap/current/sketch/SketchResults.java
bbmapy/vendor/bbmap/current/sketch/SketchSearcher$CompareThread.class
bbmapy/vendor/bbmap/current/sketch/SketchSearcher.class
bbmapy/vendor/bbmap/current/sketch/SketchSearcher.java
bbmapy/vendor/bbmap/current/sketch/SketchTool$LoadThread.class
bbmapy/vendor/bbmap/current/sketch/SketchTool$LoadThread2.class
bbmapy/vendor/bbmap/current/sketch/SketchTool$SketchThread.class
bbmapy/vendor/bbmap/current/sketch/SketchTool.class
bbmapy/vendor/bbmap/current/sketch/SketchTool.java
bbmapy/vendor/bbmap/current/sketch/SubSketch.class
bbmapy/vendor/bbmap/current/sketch/SubSketch.java
bbmapy/vendor/bbmap/current/sketch/SummarizeSketchStats$SketchResultsLine.class
bbmapy/vendor/bbmap/current/sketch/SummarizeSketchStats$SketchResultsSummary.class
bbmapy/vendor/bbmap/current/sketch/SummarizeSketchStats.class
bbmapy/vendor/bbmap/current/sketch/SummarizeSketchStats.java
bbmapy/vendor/bbmap/current/sketch/Whitelist.class
bbmapy/vendor/bbmap/current/sketch/Whitelist.java
bbmapy/vendor/bbmap/current/sort/ContigLengthComparator.class
bbmapy/vendor/bbmap/current/sort/ContigLengthComparator.java
bbmapy/vendor/bbmap/current/sort/MergeSorted.class
bbmapy/vendor/bbmap/current/sort/MergeSorted.java
bbmapy/vendor/bbmap/current/sort/ReadComparator.class
bbmapy/vendor/bbmap/current/sort/ReadComparator.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorClump.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorClump.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorCrispr.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorCrispr.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorFlowcell.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorFlowcell.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorID.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorID.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorList.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorList.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorMapping.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorMapping.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorName.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorName.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorPosition.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorPosition.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorRandom.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorRandom.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorTaxa.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorTaxa.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorTopological.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorTopological.java
bbmapy/vendor/bbmap/current/sort/ReadComparatorTopological5Bit.class
bbmapy/vendor/bbmap/current/sort/ReadComparatorTopological5Bit.java
bbmapy/vendor/bbmap/current/sort/ReadErrorComparator.class
bbmapy/vendor/bbmap/current/sort/ReadErrorComparator.java
bbmapy/vendor/bbmap/current/sort/ReadLengthComparator.class
bbmapy/vendor/bbmap/current/sort/ReadLengthComparator.java
bbmapy/vendor/bbmap/current/sort/ReadQualityComparator.class
bbmapy/vendor/bbmap/current/sort/ReadQualityComparator.java
bbmapy/vendor/bbmap/current/sort/Shuffle$ShuffleThread.class
bbmapy/vendor/bbmap/current/sort/Shuffle.class
bbmapy/vendor/bbmap/current/sort/Shuffle.java
bbmapy/vendor/bbmap/current/sort/Shuffle2$WriteThread.class
bbmapy/vendor/bbmap/current/sort/Shuffle2.class
bbmapy/vendor/bbmap/current/sort/Shuffle2.java
bbmapy/vendor/bbmap/current/sort/SortByName$WriteThread.class
bbmapy/vendor/bbmap/current/sort/SortByName.class
bbmapy/vendor/bbmap/current/sort/SortByName.java
bbmapy/vendor/bbmap/current/sort/SortReadsByID$1.class
bbmapy/vendor/bbmap/current/sort/SortReadsByID$Block.class
bbmapy/vendor/bbmap/current/sort/SortReadsByID.class
bbmapy/vendor/bbmap/current/sort/SortReadsByID.java
bbmapy/vendor/bbmap/current/stream/ArrayListSet$Pack.class
bbmapy/vendor/bbmap/current/stream/ArrayListSet.class
bbmapy/vendor/bbmap/current/stream/ArrayListSet.java
bbmapy/vendor/bbmap/current/stream/BufferedMultiCros.class
bbmapy/vendor/bbmap/current/stream/BufferedMultiCros.java
bbmapy/vendor/bbmap/current/stream/ConcurrentCollectionReadInputStream.class
bbmapy/vendor/bbmap/current/stream/ConcurrentCollectionReadInputStream.java
bbmapy/vendor/bbmap/current/stream/ConcurrentDepot.class
bbmapy/vendor/bbmap/current/stream/ConcurrentDepot.java
bbmapy/vendor/bbmap/current/stream/ConcurrentGenericReadInputStream$1.class
bbmapy/vendor/bbmap/current/stream/ConcurrentGenericReadInputStream$ReadThread.class
bbmapy/vendor/bbmap/current/stream/ConcurrentGenericReadInputStream.class
bbmapy/vendor/bbmap/current/stream/ConcurrentGenericReadInputStream.java
bbmapy/vendor/bbmap/current/stream/ConcurrentGenericReadOutputStream.class
bbmapy/vendor/bbmap/current/stream/ConcurrentGenericReadOutputStream.java
bbmapy/vendor/bbmap/current/stream/ConcurrentLegacyReadInputStream.class
bbmapy/vendor/bbmap/current/stream/ConcurrentLegacyReadInputStream.java
bbmapy/vendor/bbmap/current/stream/ConcurrentReadInputStream.class
bbmapy/vendor/bbmap/current/stream/ConcurrentReadInputStream.java
bbmapy/vendor/bbmap/current/stream/ConcurrentReadInputStreamD.class
bbmapy/vendor/bbmap/current/stream/ConcurrentReadInputStreamD.java
bbmapy/vendor/bbmap/current/stream/ConcurrentReadListDepot.class
bbmapy/vendor/bbmap/current/stream/ConcurrentReadListDepot.java
bbmapy/vendor/bbmap/current/stream/ConcurrentReadOutputStream.class
bbmapy/vendor/bbmap/current/stream/ConcurrentReadOutputStream.java
bbmapy/vendor/bbmap/current/stream/ConcurrentReadOutputStreamD$ListenThread.class
bbmapy/vendor/bbmap/current/stream/ConcurrentReadOutputStreamD.class
bbmapy/vendor/bbmap/current/stream/ConcurrentReadOutputStreamD.java
bbmapy/vendor/bbmap/current/stream/ConcurrentReadStreamInterface.class
bbmapy/vendor/bbmap/current/stream/ConcurrentReadStreamInterface.java
bbmapy/vendor/bbmap/current/stream/CrisContainer.class
bbmapy/vendor/bbmap/current/stream/CrisContainer.java
bbmapy/vendor/bbmap/current/stream/CrisWrapper.class
bbmapy/vendor/bbmap/current/stream/CrisWrapper.java
bbmapy/vendor/bbmap/current/stream/CustomHeader.class
bbmapy/vendor/bbmap/current/stream/CustomHeader.java
bbmapy/vendor/bbmap/current/stream/DualCris.class
bbmapy/vendor/bbmap/current/stream/DualCris.java
bbmapy/vendor/bbmap/current/stream/EmblReadInputStream.class
bbmapy/vendor/bbmap/current/stream/EmblReadInputStream.java
bbmapy/vendor/bbmap/current/stream/FASTQ.class
bbmapy/vendor/bbmap/current/stream/FASTQ.java
bbmapy/vendor/bbmap/current/stream/FastaQualReadInputStream.class
bbmapy/vendor/bbmap/current/stream/FastaQualReadInputStream.java
bbmapy/vendor/bbmap/current/stream/FastaReadInputStream.class
bbmapy/vendor/bbmap/current/stream/FastaReadInputStream.java
bbmapy/vendor/bbmap/current/stream/FastaShredInputStream.class
bbmapy/vendor/bbmap/current/stream/FastaShredInputStream.java
bbmapy/vendor/bbmap/current/stream/FastqReadInputStream.class
bbmapy/vendor/bbmap/current/stream/FastqReadInputStream.java
bbmapy/vendor/bbmap/current/stream/GbkReadInputStream.class
bbmapy/vendor/bbmap/current/stream/GbkReadInputStream.java
bbmapy/vendor/bbmap/current/stream/HeaderInputStream.class
bbmapy/vendor/bbmap/current/stream/HeaderInputStream.java
bbmapy/vendor/bbmap/current/stream/MDWalker.class
bbmapy/vendor/bbmap/current/stream/MDWalker.java
bbmapy/vendor/bbmap/current/stream/MultiCros.class
bbmapy/vendor/bbmap/current/stream/MultiCros.java
bbmapy/vendor/bbmap/current/stream/MultiCros2$Buffer.class
bbmapy/vendor/bbmap/current/stream/MultiCros2.class
bbmapy/vendor/bbmap/current/stream/MultiCros2.java
bbmapy/vendor/bbmap/current/stream/MultiCros3$Buffer.class
bbmapy/vendor/bbmap/current/stream/MultiCros3.class
bbmapy/vendor/bbmap/current/stream/MultiCros3.java
bbmapy/vendor/bbmap/current/stream/MultiCros4$Buffer.class
bbmapy/vendor/bbmap/current/stream/MultiCros4$RetireThread.class
bbmapy/vendor/bbmap/current/stream/MultiCros4$Token.class
bbmapy/vendor/bbmap/current/stream/MultiCros4.class
bbmapy/vendor/bbmap/current/stream/MultiCros4.java
bbmapy/vendor/bbmap/current/stream/MultiCros5$Buffer.class
bbmapy/vendor/bbmap/current/stream/MultiCros5.class
bbmapy/vendor/bbmap/current/stream/MultiCros5.java
bbmapy/vendor/bbmap/current/stream/MultiCros6$Buffer.class
bbmapy/vendor/bbmap/current/stream/MultiCros6$TimestampComparator.class
bbmapy/vendor/bbmap/current/stream/MultiCros6.class
bbmapy/vendor/bbmap/current/stream/MultiCros6.java
bbmapy/vendor/bbmap/current/stream/NullOutputStream.class
bbmapy/vendor/bbmap/current/stream/NullOutputStream.java
bbmapy/vendor/bbmap/current/stream/OnelineReadInputStream.class
bbmapy/vendor/bbmap/current/stream/OnelineReadInputStream.java
bbmapy/vendor/bbmap/current/stream/RTextInputStream.class
bbmapy/vendor/bbmap/current/stream/RTextInputStream.java
bbmapy/vendor/bbmap/current/stream/RandomReadInputStream3.class
bbmapy/vendor/bbmap/current/stream/RandomReadInputStream3.java
bbmapy/vendor/bbmap/current/stream/Read.class
bbmapy/vendor/bbmap/current/stream/Read.java
bbmapy/vendor/bbmap/current/stream/ReadInputStream.class
bbmapy/vendor/bbmap/current/stream/ReadInputStream.java
bbmapy/vendor/bbmap/current/stream/ReadStreamByteWriter.class
bbmapy/vendor/bbmap/current/stream/ReadStreamByteWriter.java
bbmapy/vendor/bbmap/current/stream/ReadStreamWriter$Job.class
bbmapy/vendor/bbmap/current/stream/ReadStreamWriter.class
bbmapy/vendor/bbmap/current/stream/ReadStreamWriter.java
bbmapy/vendor/bbmap/current/stream/SamHeader.class
bbmapy/vendor/bbmap/current/stream/SamHeader.java
bbmapy/vendor/bbmap/current/stream/SamLine.class
bbmapy/vendor/bbmap/current/stream/SamLine.java
bbmapy/vendor/bbmap/current/stream/SamLineStreamer$ProcessThread.class
bbmapy/vendor/bbmap/current/stream/SamLineStreamer.class
bbmapy/vendor/bbmap/current/stream/SamLineStreamer.java
bbmapy/vendor/bbmap/current/stream/SamReadInputStream.class
bbmapy/vendor/bbmap/current/stream/SamReadInputStream.java
bbmapy/vendor/bbmap/current/stream/SamReadStreamer$ProcessThread.class
bbmapy/vendor/bbmap/current/stream/SamReadStreamer.class
bbmapy/vendor/bbmap/current/stream/SamReadStreamer.java
bbmapy/vendor/bbmap/current/stream/SamStreamer.class
bbmapy/vendor/bbmap/current/stream/SamStreamer.java
bbmapy/vendor/bbmap/current/stream/SamStreamerMF.class
bbmapy/vendor/bbmap/current/stream/SamStreamerMF.java
bbmapy/vendor/bbmap/current/stream/SamStreamerWrapper.class
bbmapy/vendor/bbmap/current/stream/SamStreamerWrapper.java
bbmapy/vendor/bbmap/current/stream/ScaffoldCoordinates.class
bbmapy/vendor/bbmap/current/stream/ScaffoldCoordinates.java
bbmapy/vendor/bbmap/current/stream/ScarfReadInputStream.class
bbmapy/vendor/bbmap/current/stream/ScarfReadInputStream.java
bbmapy/vendor/bbmap/current/stream/SequentialReadInputStream.class
bbmapy/vendor/bbmap/current/stream/SequentialReadInputStream.java
bbmapy/vendor/bbmap/current/stream/SiteScore$PositionComparator.class
bbmapy/vendor/bbmap/current/stream/SiteScore.class
bbmapy/vendor/bbmap/current/stream/SiteScore.java
bbmapy/vendor/bbmap/current/stream/SiteScoreR$IDComparator.class
bbmapy/vendor/bbmap/current/stream/SiteScoreR$NormalizedComparator.class
bbmapy/vendor/bbmap/current/stream/SiteScoreR$PositionComparator.class
bbmapy/vendor/bbmap/current/stream/SiteScoreR.class
bbmapy/vendor/bbmap/current/stream/SiteScoreR.java
bbmapy/vendor/bbmap/current/structures/AbstractBitSet.class
bbmapy/vendor/bbmap/current/structures/AbstractBitSet.java
bbmapy/vendor/bbmap/current/structures/AbstractIntHashMap.class
bbmapy/vendor/bbmap/current/structures/AbstractIntHashMap.java
bbmapy/vendor/bbmap/current/structures/AtomicBitSet.class
bbmapy/vendor/bbmap/current/structures/AtomicBitSet.java
bbmapy/vendor/bbmap/current/structures/ByteBuilder.class
bbmapy/vendor/bbmap/current/structures/ByteBuilder.java
bbmapy/vendor/bbmap/current/structures/CRange.class
bbmapy/vendor/bbmap/current/structures/CRange.java
bbmapy/vendor/bbmap/current/structures/CoverageArray.class
bbmapy/vendor/bbmap/current/structures/CoverageArray.java
bbmapy/vendor/bbmap/current/structures/CoverageArray2.class
bbmapy/vendor/bbmap/current/structures/CoverageArray2.java
bbmapy/vendor/bbmap/current/structures/CoverageArray2A.class
bbmapy/vendor/bbmap/current/structures/CoverageArray2A.java
bbmapy/vendor/bbmap/current/structures/CoverageArray3.class
bbmapy/vendor/bbmap/current/structures/CoverageArray3.java
bbmapy/vendor/bbmap/current/structures/CoverageArray3A.class
bbmapy/vendor/bbmap/current/structures/CoverageArray3A.java
bbmapy/vendor/bbmap/current/structures/Crispr.class
bbmapy/vendor/bbmap/current/structures/Crispr.java
bbmapy/vendor/bbmap/current/structures/DoubleList.class
bbmapy/vendor/bbmap/current/structures/DoubleList.java
bbmapy/vendor/bbmap/current/structures/Feature.class
bbmapy/vendor/bbmap/current/structures/Feature.java
bbmapy/vendor/bbmap/current/structures/FloatList.class
bbmapy/vendor/bbmap/current/structures/FloatList.java
bbmapy/vendor/bbmap/current/structures/Heap$HeapIterator.class
bbmapy/vendor/bbmap/current/structures/Heap.class
bbmapy/vendor/bbmap/current/structures/Heap.java
bbmapy/vendor/bbmap/current/structures/HeapLoc$HeapIterator.class
bbmapy/vendor/bbmap/current/structures/HeapLoc.class
bbmapy/vendor/bbmap/current/structures/HeapLoc.java
bbmapy/vendor/bbmap/current/structures/IntHashMap.class
bbmapy/vendor/bbmap/current/structures/IntHashMap.java
bbmapy/vendor/bbmap/current/structures/IntHashMapBinary.class
bbmapy/vendor/bbmap/current/structures/IntHashMapBinary.java
bbmapy/vendor/bbmap/current/structures/IntHashSet.class
bbmapy/vendor/bbmap/current/structures/IntHashSet.java
bbmapy/vendor/bbmap/current/structures/IntHashSetList.class
bbmapy/vendor/bbmap/current/structures/IntHashSetList.java
bbmapy/vendor/bbmap/current/structures/IntList.class
bbmapy/vendor/bbmap/current/structures/IntList.java
bbmapy/vendor/bbmap/current/structures/IntList2.class
bbmapy/vendor/bbmap/current/structures/IntList2.java
bbmapy/vendor/bbmap/current/structures/IntList3.class
bbmapy/vendor/bbmap/current/structures/IntList3.java
bbmapy/vendor/bbmap/current/structures/IntListCompressor.class
bbmapy/vendor/bbmap/current/structures/IntListCompressor.java
bbmapy/vendor/bbmap/current/structures/IntLongHashMap.class
bbmapy/vendor/bbmap/current/structures/IntLongHashMap.java
bbmapy/vendor/bbmap/current/structures/IntMap.class
bbmapy/vendor/bbmap/current/structures/IntMap.java
bbmapy/vendor/bbmap/current/structures/ListNum.class
bbmapy/vendor/bbmap/current/structures/ListNum.java
bbmapy/vendor/bbmap/current/structures/LongArrayListHashMap.class
bbmapy/vendor/bbmap/current/structures/LongArrayListHashMap.java
bbmapy/vendor/bbmap/current/structures/LongHashMap.class
bbmapy/vendor/bbmap/current/structures/LongHashMap.java
bbmapy/vendor/bbmap/current/structures/LongHashSet.class
bbmapy/vendor/bbmap/current/structures/LongHashSet.java
bbmapy/vendor/bbmap/current/structures/LongHeap.class
bbmapy/vendor/bbmap/current/structures/LongHeap.java
bbmapy/vendor/bbmap/current/structures/LongHeapMap.class
bbmapy/vendor/bbmap/current/structures/LongHeapMap.java
bbmapy/vendor/bbmap/current/structures/LongHeapSet.class
bbmapy/vendor/bbmap/current/structures/LongHeapSet.java
bbmapy/vendor/bbmap/current/structures/LongHeapSetInterface.class
bbmapy/vendor/bbmap/current/structures/LongHeapSetInterface.java
bbmapy/vendor/bbmap/current/structures/LongList.class
bbmapy/vendor/bbmap/current/structures/LongList.java
bbmapy/vendor/bbmap/current/structures/LongList2.class
bbmapy/vendor/bbmap/current/structures/LongList2.java
bbmapy/vendor/bbmap/current/structures/LongList3.class
bbmapy/vendor/bbmap/current/structures/LongList3.java
bbmapy/vendor/bbmap/current/structures/LongListSet$LongListSetIterator.class
bbmapy/vendor/bbmap/current/structures/LongListSet.class
bbmapy/vendor/bbmap/current/structures/LongListSet.java
bbmapy/vendor/bbmap/current/structures/LongLongHashMap.class
bbmapy/vendor/bbmap/current/structures/LongLongHashMap.java
bbmapy/vendor/bbmap/current/structures/LongLongListHashMap.class
bbmapy/vendor/bbmap/current/structures/LongLongListHashMap.java
bbmapy/vendor/bbmap/current/structures/LongM.class
bbmapy/vendor/bbmap/current/structures/LongM.java
bbmapy/vendor/bbmap/current/structures/LongPair.class
bbmapy/vendor/bbmap/current/structures/LongPair.java
bbmapy/vendor/bbmap/current/structures/MultiBitSet.class
bbmapy/vendor/bbmap/current/structures/MultiBitSet.java
bbmapy/vendor/bbmap/current/structures/Quantizer.class
bbmapy/vendor/bbmap/current/structures/Quantizer.java
bbmapy/vendor/bbmap/current/structures/Range.class
bbmapy/vendor/bbmap/current/structures/Range.java
bbmapy/vendor/bbmap/current/structures/RawBitSet.class
bbmapy/vendor/bbmap/current/structures/RawBitSet.java
bbmapy/vendor/bbmap/current/structures/SeqCount.class
bbmapy/vendor/bbmap/current/structures/SeqCount.java
bbmapy/vendor/bbmap/current/structures/SeqCountM.class
bbmapy/vendor/bbmap/current/structures/SeqCountM.java
bbmapy/vendor/bbmap/current/structures/SeqMap$1.class
bbmapy/vendor/bbmap/current/structures/SeqMap$2.class
bbmapy/vendor/bbmap/current/structures/SeqMap$3.class
bbmapy/vendor/bbmap/current/structures/SeqMap.class
bbmapy/vendor/bbmap/current/structures/SeqMap.java
bbmapy/vendor/bbmap/current/structures/SeqPos.class
bbmapy/vendor/bbmap/current/structures/SeqPos.java
bbmapy/vendor/bbmap/current/structures/SeqPosM.class
bbmapy/vendor/bbmap/current/structures/SeqPosM.java
bbmapy/vendor/bbmap/current/structures/SetLoc.class
bbmapy/vendor/bbmap/current/structures/SetLoc.java
bbmapy/vendor/bbmap/current/structures/StandardDeviator$ProcessThread.class
bbmapy/vendor/bbmap/current/structures/StandardDeviator.class
bbmapy/vendor/bbmap/current/structures/StandardDeviator.java
bbmapy/vendor/bbmap/current/structures/StringNum.class
bbmapy/vendor/bbmap/current/structures/StringNum.java
bbmapy/vendor/bbmap/current/structures/StringPair.class
bbmapy/vendor/bbmap/current/structures/StringPair.java
bbmapy/vendor/bbmap/current/structures/SuperLongList.class
bbmapy/vendor/bbmap/current/structures/SuperLongList.java
bbmapy/vendor/bbmap/current/tax/AccessionToTaxid$HashThread.class
bbmapy/vendor/bbmap/current/tax/AccessionToTaxid.class
bbmapy/vendor/bbmap/current/tax/AccessionToTaxid.java
bbmapy/vendor/bbmap/current/tax/AccessionToTaxid_old$HashThread.class
bbmapy/vendor/bbmap/current/tax/AccessionToTaxid_old.class
bbmapy/vendor/bbmap/current/tax/AccessionToTaxid_old.java
bbmapy/vendor/bbmap/current/tax/AnalyzeAccession$ProcessThread.class
bbmapy/vendor/bbmap/current/tax/AnalyzeAccession.class
bbmapy/vendor/bbmap/current/tax/AnalyzeAccession.java
bbmapy/vendor/bbmap/current/tax/AnalyzeAccession_ST.class
bbmapy/vendor/bbmap/current/tax/AnalyzeAccession_ST.java
bbmapy/vendor/bbmap/current/tax/ExplodeTree.class
bbmapy/vendor/bbmap/current/tax/ExplodeTree.java
bbmapy/vendor/bbmap/current/tax/FilterByTaxa.class
bbmapy/vendor/bbmap/current/tax/FilterByTaxa.java
bbmapy/vendor/bbmap/current/tax/FindAncestor.class
bbmapy/vendor/bbmap/current/tax/FindAncestor.java
bbmapy/vendor/bbmap/current/tax/GiToTaxid.class
bbmapy/vendor/bbmap/current/tax/GiToTaxid.java
bbmapy/vendor/bbmap/current/tax/GiToTaxidInt.class
bbmapy/vendor/bbmap/current/tax/GiToTaxidInt.java
bbmapy/vendor/bbmap/current/tax/IDNode.class
bbmapy/vendor/bbmap/current/tax/IDNode.java
bbmapy/vendor/bbmap/current/tax/IDTree.class
bbmapy/vendor/bbmap/current/tax/IDTree.java
bbmapy/vendor/bbmap/current/tax/ImgRecord.class
bbmapy/vendor/bbmap/current/tax/ImgRecord.java
bbmapy/vendor/bbmap/current/tax/ImgRecord2.class
bbmapy/vendor/bbmap/current/tax/ImgRecord2.java
bbmapy/vendor/bbmap/current/tax/PrintTaxonomy.class
bbmapy/vendor/bbmap/current/tax/PrintTaxonomy.java
bbmapy/vendor/bbmap/current/tax/Query.class
bbmapy/vendor/bbmap/current/tax/Query.java
bbmapy/vendor/bbmap/current/tax/RenameGiToTaxid.class
bbmapy/vendor/bbmap/current/tax/RenameGiToTaxid.java
bbmapy/vendor/bbmap/current/tax/RenameIMG.class
bbmapy/vendor/bbmap/current/tax/RenameIMG.java
bbmapy/vendor/bbmap/current/tax/ShrinkAccession.class
bbmapy/vendor/bbmap/current/tax/ShrinkAccession.java
bbmapy/vendor/bbmap/current/tax/SplitByTaxa.class
bbmapy/vendor/bbmap/current/tax/SplitByTaxa.java
bbmapy/vendor/bbmap/current/tax/TaxApp$1.class
bbmapy/vendor/bbmap/current/tax/TaxApp.class
bbmapy/vendor/bbmap/current/tax/TaxApp.java
bbmapy/vendor/bbmap/current/tax/TaxClient.class
bbmapy/vendor/bbmap/current/tax/TaxClient.java
bbmapy/vendor/bbmap/current/tax/TaxFilter$1.class
bbmapy/vendor/bbmap/current/tax/TaxFilter.class
bbmapy/vendor/bbmap/current/tax/TaxFilter.java
bbmapy/vendor/bbmap/current/tax/TaxNode$CountComparator.class
bbmapy/vendor/bbmap/current/tax/TaxNode.class
bbmapy/vendor/bbmap/current/tax/TaxNode.java
bbmapy/vendor/bbmap/current/tax/TaxServer$CompareThread.class
bbmapy/vendor/bbmap/current/tax/TaxServer$HelpHandler.class
bbmapy/vendor/bbmap/current/tax/TaxServer$IconHandler.class
bbmapy/vendor/bbmap/current/tax/TaxServer$KillHandler.class
bbmapy/vendor/bbmap/current/tax/TaxServer$SketchHandler$SketchInstance.class
bbmapy/vendor/bbmap/current/tax/TaxServer$SketchHandler.class
bbmapy/vendor/bbmap/current/tax/TaxServer$StatsHandler.class
bbmapy/vendor/bbmap/current/tax/TaxServer$TaxHandler.class
bbmapy/vendor/bbmap/current/tax/TaxServer.class
bbmapy/vendor/bbmap/current/tax/TaxServer.java
bbmapy/vendor/bbmap/current/tax/TaxSize.class
bbmapy/vendor/bbmap/current/tax/TaxSize.java
bbmapy/vendor/bbmap/current/tax/TaxTree.class
bbmapy/vendor/bbmap/current/tax/TaxTree.java
bbmapy/vendor/bbmap/current/template/A_Sample.class
bbmapy/vendor/bbmap/current/template/A_Sample.java
bbmapy/vendor/bbmap/current/template/A_Sample2.class
bbmapy/vendor/bbmap/current/template/A_Sample2.java
bbmapy/vendor/bbmap/current/template/A_SampleBasic.class
bbmapy/vendor/bbmap/current/template/A_SampleBasic.java
bbmapy/vendor/bbmap/current/template/A_SampleBasic2.class
bbmapy/vendor/bbmap/current/template/A_SampleBasic2.java
bbmapy/vendor/bbmap/current/template/A_SampleByteFile.class
bbmapy/vendor/bbmap/current/template/A_SampleByteFile.java
bbmapy/vendor/bbmap/current/template/A_SampleByteFileMT$ProcessThread.class
bbmapy/vendor/bbmap/current/template/A_SampleByteFileMT.class
bbmapy/vendor/bbmap/current/template/A_SampleByteFileMT.java
bbmapy/vendor/bbmap/current/template/A_SampleD.class
bbmapy/vendor/bbmap/current/template/A_SampleD.java
bbmapy/vendor/bbmap/current/template/A_SampleMT$ProcessThread.class
bbmapy/vendor/bbmap/current/template/A_SampleMT.class
bbmapy/vendor/bbmap/current/template/A_SampleMT.java
bbmapy/vendor/bbmap/current/template/A_SampleMultipleInput.class
bbmapy/vendor/bbmap/current/template/A_SampleMultipleInput.java
bbmapy/vendor/bbmap/current/template/A_SampleSamStreamer$ProcessThread.class
bbmapy/vendor/bbmap/current/template/A_SampleSamStreamer.class
bbmapy/vendor/bbmap/current/template/A_SampleSamStreamer.java
bbmapy/vendor/bbmap/current/template/A_SampleSummary.class
bbmapy/vendor/bbmap/current/template/A_SampleSummary.java
bbmapy/vendor/bbmap/current/template/A_Sample_Generator$ProcessThread.class
bbmapy/vendor/bbmap/current/template/A_Sample_Generator.class
bbmapy/vendor/bbmap/current/template/A_Sample_Generator.java
bbmapy/vendor/bbmap/current/template/A_Sample_Unpaired.class
bbmapy/vendor/bbmap/current/template/A_Sample_Unpaired.java
bbmapy/vendor/bbmap/current/template/Accumulator.class
bbmapy/vendor/bbmap/current/template/Accumulator.java
bbmapy/vendor/bbmap/current/template/BBTool_ST.class
bbmapy/vendor/bbmap/current/template/BBTool_ST.java
bbmapy/vendor/bbmap/current/template/DoWorker.class
bbmapy/vendor/bbmap/current/template/DoWorker.java
bbmapy/vendor/bbmap/current/template/ThreadPoolJob.class
bbmapy/vendor/bbmap/current/template/ThreadPoolJob.java
bbmapy/vendor/bbmap/current/template/ThreadWaiter.class
bbmapy/vendor/bbmap/current/template/ThreadWaiter.java
bbmapy/vendor/bbmap/current/tracker/AdapterTracker.class
bbmapy/vendor/bbmap/current/tracker/AdapterTracker.java
bbmapy/vendor/bbmap/current/tracker/CrisprTracker.class
bbmapy/vendor/bbmap/current/tracker/CrisprTracker.java
bbmapy/vendor/bbmap/current/tracker/EntropyTracker.class
bbmapy/vendor/bbmap/current/tracker/EntropyTracker.java
bbmapy/vendor/bbmap/current/tracker/PalindromeTracker.class
bbmapy/vendor/bbmap/current/tracker/PalindromeTracker.java
bbmapy/vendor/bbmap/current/tracker/PolymerTracker.class
bbmapy/vendor/bbmap/current/tracker/PolymerTracker.java
bbmapy/vendor/bbmap/current/tracker/QualityTracker.class
bbmapy/vendor/bbmap/current/tracker/QualityTracker.java
bbmapy/vendor/bbmap/current/tracker/ReadStats.class
bbmapy/vendor/bbmap/current/tracker/ReadStats.java
bbmapy/vendor/bbmap/current/tracker/SealStats$SealStatsLine.class
bbmapy/vendor/bbmap/current/tracker/SealStats.class
bbmapy/vendor/bbmap/current/tracker/SealStats.java
bbmapy/vendor/bbmap/current/ukmer/AbstractKmerTableU$AllocThread.class
bbmapy/vendor/bbmap/current/ukmer/AbstractKmerTableU.class
bbmapy/vendor/bbmap/current/ukmer/AbstractKmerTableU.java
bbmapy/vendor/bbmap/current/ukmer/DumpThreadU.class
bbmapy/vendor/bbmap/current/ukmer/DumpThreadU.java
bbmapy/vendor/bbmap/current/ukmer/HashArrayU.class
bbmapy/vendor/bbmap/current/ukmer/HashArrayU.java
bbmapy/vendor/bbmap/current/ukmer/HashArrayU1D$WalkerU1D.class
bbmapy/vendor/bbmap/current/ukmer/HashArrayU1D.class
bbmapy/vendor/bbmap/current/ukmer/HashArrayU1D.java
bbmapy/vendor/bbmap/current/ukmer/HashArrayU2D.class
bbmapy/vendor/bbmap/current/ukmer/HashArrayU2D.java
bbmapy/vendor/bbmap/current/ukmer/HashArrayUHybrid.class
bbmapy/vendor/bbmap/current/ukmer/HashArrayUHybrid.java
bbmapy/vendor/bbmap/current/ukmer/HashBufferU.class
bbmapy/vendor/bbmap/current/ukmer/HashBufferU.java
bbmapy/vendor/bbmap/current/ukmer/HashForestU.class
bbmapy/vendor/bbmap/current/ukmer/HashForestU.java
bbmapy/vendor/bbmap/current/ukmer/HistogramMakerU$FillThread.class
bbmapy/vendor/bbmap/current/ukmer/HistogramMakerU.class
bbmapy/vendor/bbmap/current/ukmer/HistogramMakerU.java
bbmapy/vendor/bbmap/current/ukmer/Kmer.class
bbmapy/vendor/bbmap/current/ukmer/Kmer.java
bbmapy/vendor/bbmap/current/ukmer/KmerBufferU.class
bbmapy/vendor/bbmap/current/ukmer/KmerBufferU.java
bbmapy/vendor/bbmap/current/ukmer/KmerNodeU.class
bbmapy/vendor/bbmap/current/ukmer/KmerNodeU.java
bbmapy/vendor/bbmap/current/ukmer/KmerNodeU1D.class
bbmapy/vendor/bbmap/current/ukmer/KmerNodeU1D.java
bbmapy/vendor/bbmap/current/ukmer/KmerNodeU2D.class
bbmapy/vendor/bbmap/current/ukmer/KmerNodeU2D.java
bbmapy/vendor/bbmap/current/ukmer/KmerTableSetU$LoadThread.class
bbmapy/vendor/bbmap/current/ukmer/KmerTableSetU$WalkerKSTU.class
bbmapy/vendor/bbmap/current/ukmer/KmerTableSetU.class
bbmapy/vendor/bbmap/current/ukmer/KmerTableSetU.java
bbmapy/vendor/bbmap/current/ukmer/OwnershipThread.class
bbmapy/vendor/bbmap/current/ukmer/OwnershipThread.java
bbmapy/vendor/bbmap/current/ukmer/WalkerU.class
bbmapy/vendor/bbmap/current/ukmer/WalkerU.java
bbmapy/vendor/bbmap/current/var/ApplyVarsToReference$1.class
bbmapy/vendor/bbmap/current/var/ApplyVarsToReference.class
bbmapy/vendor/bbmap/current/var/ApplyVarsToReference.java
bbmapy/vendor/bbmap/current/var/GenerateConsensusVariations$1.class
bbmapy/vendor/bbmap/current/var/GenerateConsensusVariations.class
bbmapy/vendor/bbmap/current/var/GenerateConsensusVariations.java
bbmapy/vendor/bbmap/current/var/GenerateVarlets$ProcessThread.class
bbmapy/vendor/bbmap/current/var/GenerateVarlets.class
bbmapy/vendor/bbmap/current/var/GenerateVarlets.java
bbmapy/vendor/bbmap/current/var/GenerateVarlets2$1.class
bbmapy/vendor/bbmap/current/var/GenerateVarlets2$ProcessThread.class
bbmapy/vendor/bbmap/current/var/GenerateVarlets2.class
bbmapy/vendor/bbmap/current/var/GenerateVarlets2.java
bbmapy/vendor/bbmap/current/var/GenerateVarlets3$1.class
bbmapy/vendor/bbmap/current/var/GenerateVarlets3$ProcessThread.class
bbmapy/vendor/bbmap/current/var/GenerateVarlets3.class
bbmapy/vendor/bbmap/current/var/GenerateVarlets3.java
bbmapy/vendor/bbmap/current/var/StackVariations$1.class
bbmapy/vendor/bbmap/current/var/StackVariations$SVThread.class
bbmapy/vendor/bbmap/current/var/StackVariations.class
bbmapy/vendor/bbmap/current/var/StackVariations.java
bbmapy/vendor/bbmap/current/var/StackVariations2$1.class
bbmapy/vendor/bbmap/current/var/StackVariations2$SVThread.class
bbmapy/vendor/bbmap/current/var/StackVariations2.class
bbmapy/vendor/bbmap/current/var/StackVariations2.java
bbmapy/vendor/bbmap/current/var/VarLine.class
bbmapy/vendor/bbmap/current/var/VarLine.java
bbmapy/vendor/bbmap/current/var/Variation.class
bbmapy/vendor/bbmap/current/var/Variation.java
bbmapy/vendor/bbmap/current/var/Varlet.class
bbmapy/vendor/bbmap/current/var/Varlet.java
bbmapy/vendor/bbmap/current/var2/ApplyVariants.class
bbmapy/vendor/bbmap/current/var2/ApplyVariants.java
bbmapy/vendor/bbmap/current/var2/CallVariants$ProcessThread.class
bbmapy/vendor/bbmap/current/var2/CallVariants.class
bbmapy/vendor/bbmap/current/var2/CallVariants.java
bbmapy/vendor/bbmap/current/var2/CallVariants2$Sample$ProcessThread.class
bbmapy/vendor/bbmap/current/var2/CallVariants2$Sample.class
bbmapy/vendor/bbmap/current/var2/CallVariants2.class
bbmapy/vendor/bbmap/current/var2/CallVariants2.java
bbmapy/vendor/bbmap/current/var2/CompareVCF.class
bbmapy/vendor/bbmap/current/var2/CompareVCF.java
bbmapy/vendor/bbmap/current/var2/FilterSam$ProcessThread.class
bbmapy/vendor/bbmap/current/var2/FilterSam.class
bbmapy/vendor/bbmap/current/var2/FilterSam.java
bbmapy/vendor/bbmap/current/var2/FilterVCF$ProcessThread.class
bbmapy/vendor/bbmap/current/var2/FilterVCF.class
bbmapy/vendor/bbmap/current/var2/FilterVCF.java
bbmapy/vendor/bbmap/current/var2/MergeSamples$MergeThread.class
bbmapy/vendor/bbmap/current/var2/MergeSamples.class
bbmapy/vendor/bbmap/current/var2/MergeSamples.java
bbmapy/vendor/bbmap/current/var2/Realign$ProcessThread.class
bbmapy/vendor/bbmap/current/var2/Realign.class
bbmapy/vendor/bbmap/current/var2/Realign.java
bbmapy/vendor/bbmap/current/var2/Realigner.class
bbmapy/vendor/bbmap/current/var2/Realigner.java
bbmapy/vendor/bbmap/current/var2/SamFilter.class
bbmapy/vendor/bbmap/current/var2/SamFilter.java
bbmapy/vendor/bbmap/current/var2/ScafMap.class
bbmapy/vendor/bbmap/current/var2/ScafMap.java
bbmapy/vendor/bbmap/current/var2/Scaffold.class
bbmapy/vendor/bbmap/current/var2/Scaffold.java
bbmapy/vendor/bbmap/current/var2/SoftClipper.class
bbmapy/vendor/bbmap/current/var2/SoftClipper.java
bbmapy/vendor/bbmap/current/var2/VCFFile$1.class
bbmapy/vendor/bbmap/current/var2/VCFFile.class
bbmapy/vendor/bbmap/current/var2/VCFFile.java
bbmapy/vendor/bbmap/current/var2/VCFLine.class
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