LICENSE
LICENSE.txt
setup.cfg
setup.py
basepair/__init__.py
basepair/api.py
basepair.egg-info/PKG-INFO
basepair.egg-info/SOURCES.txt
basepair.egg-info/dependency_links.txt
basepair.egg-info/requires.txt
basepair.egg-info/top_level.txt
basepair/helpers/__init__.py
basepair/helpers/eprint.py
basepair/helpers/nice_print.py
basepair/helpers/set_filter.py
basepair/infra/__init__.py
basepair/infra/configuration/__init__.py
basepair/infra/configuration/parser.py
basepair/infra/webapp/__init__.py
basepair/infra/webapp/abstract.py
basepair/infra/webapp/analysis.py
basepair/infra/webapp/file.py
basepair/infra/webapp/gene.py
basepair/infra/webapp/genome.py
basepair/infra/webapp/genome_file.py
basepair/infra/webapp/host.py
basepair/infra/webapp/instance.py
basepair/infra/webapp/module.py
basepair/infra/webapp/pipeline.py
basepair/infra/webapp/project.py
basepair/infra/webapp/sample.py
basepair/infra/webapp/upload.py
basepair/infra/webapp/user.py
basepair/modules/__init__.py
basepair/modules/alert/__init__.py
basepair/modules/alert/alert.py
basepair/modules/alert/drivers/__init__.py
basepair/modules/alert/drivers/abstract.py
basepair/modules/alert/drivers/opsgenie.py
basepair/modules/alert/drivers/slack.py
basepair/modules/analysis_log/__init__.py
basepair/modules/analysis_log/abstract.py
basepair/modules/analysis_log/analysis.py
basepair/modules/analysis_log/infra.py
basepair/modules/aws/__init__.py
basepair/modules/aws/cw.py
basepair/modules/aws/ec2.py
basepair/modules/aws/efs.py
basepair/modules/aws/hos.py
basepair/modules/aws/how.py
basepair/modules/aws/iam.py
basepair/modules/aws/instance.py
basepair/modules/aws/logs.py
basepair/modules/aws/mrktpl.py
basepair/modules/aws/policy.py
basepair/modules/aws/s3.py
basepair/modules/aws/service.py
basepair/modules/aws/sm.py
basepair/modules/aws/sqs.py
basepair/modules/aws/sts.py
basepair/modules/aws/swf.py
basepair/modules/aws/handler/__init__.py
basepair/modules/aws/handler/exception.py
basepair/modules/identity/__init__.py
basepair/modules/identity/main.py
basepair/modules/identity/drivers/__init__.py
basepair/modules/identity/drivers/abstract.py
basepair/modules/identity/drivers/aws_iam.py
basepair/modules/identity/drivers/local.py
basepair/modules/logger/__init__.py
basepair/modules/logger/logger.py
basepair/modules/logger/drivers/__init__.py
basepair/modules/logger/drivers/abstract.py
basepair/modules/logger/drivers/logbook.py
basepair/modules/logger/drivers/rollbar.py
basepair/modules/secrets/__init__.py
basepair/modules/secrets/main.py
basepair/modules/secrets/drivers/__init__.py
basepair/modules/secrets/drivers/abstract.py
basepair/modules/secrets/drivers/aws_sm.py
basepair/modules/secrets/drivers/local.py
basepair/modules/storage/__init__.py
basepair/modules/storage/main.py
basepair/modules/storage/drivers/__init__.py
basepair/modules/storage/drivers/abstract.py
basepair/modules/storage/drivers/aws_hos.py
basepair/modules/storage/drivers/aws_s3.py
basepair/modules/storage/drivers/minio.py
basepair/utils/__init__.py
basepair/utils/colors.py
basepair/utils/monitor.py
basepair/utils/s3.py
basepair/utils/sqs.py
basepair/utils/swf.py
bin/__init__.py
bin/basepair
bin/common_parser.py
bin/datatypes/__init__.py
bin/datatypes/analysis.py
bin/datatypes/file.py
bin/datatypes/genome.py
bin/datatypes/module.py
bin/datatypes/pipeline.py
bin/datatypes/project.py
bin/datatypes/sample.py
tests/test_genes.py
tests/test_samples.py