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CHANGELOG
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LICENSE
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notes.md
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baggianalysis.egg-info/PKG-INFO
baggianalysis.egg-info/SOURCES.txt
baggianalysis.egg-info/dependency_links.txt
baggianalysis.egg-info/entry_points.txt
baggianalysis.egg-info/not-zip-safe
baggianalysis.egg-info/top_level.txt
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docs/_config.yml
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docs/converters.md
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docs/install.md
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docs/traj.md
docs/utils.md
docs/core/core.md
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docs/core/filters.md
docs/core/neighbours.md
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examples/LAMMPS/datafile.lammps
examples/oxDNA/patch_to_cogli.py
examples/oxDNA/sq.py
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extern/spdlog/logos/jetbrains-variant-4.svg
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legacy/pybind11_2.4.3.tgz
lib/CMakeLists.txt
lib/System.cpp
lib/System.h
lib/defs.h
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lib/exporters/BaseExporter.h
lib/exporters/Cogli1Exporter.cpp
lib/exporters/Cogli1Exporter.h
lib/exporters/GenericOxDNAExporter.cpp
lib/exporters/GenericOxDNAExporter.h
lib/exporters/LAMMPSDataFileExporter.cpp
lib/exporters/LAMMPSDataFileExporter.h
lib/filters/BaseFilter.cpp
lib/filters/BaseFilter.h
lib/filters/FilterByFunction.cpp
lib/filters/FilterByFunction.h
lib/filters/FilterById.cpp
lib/filters/FilterById.h
lib/filters/FilterByReducingToCOM.cpp
lib/filters/FilterByReducingToCOM.h
lib/filters/FilterByType.cpp
lib/filters/FilterByType.h
lib/filters/FixParticlePath.cpp
lib/filters/FixParticlePath.h
lib/filters/MapParticles.cpp
lib/filters/MapParticles.h
lib/filters/MolecularCOMs.cpp
lib/filters/MolecularCOMs.h
lib/filters/SubtractCOM.cpp
lib/filters/SubtractCOM.h
lib/neighbour_finders/CutoffFinder.cpp
lib/neighbour_finders/CutoffFinder.h
lib/neighbour_finders/FixedNumberFinder.cpp
lib/neighbour_finders/FixedNumberFinder.h
lib/neighbour_finders/NeighbourFinder.cpp
lib/neighbour_finders/NeighbourFinder.h
lib/neighbour_finders/SANNFinder.cpp
lib/neighbour_finders/SANNFinder.h
lib/observables/BondOrderParameters.cpp
lib/observables/BondOrderParameters.h
lib/observables/ClusterList.cpp
lib/observables/ClusterList.h
lib/observables/CollectiveISF.cpp
lib/observables/CollectiveISF.h
lib/observables/ConvexHull.cpp
lib/observables/ConvexHull.h
lib/observables/FormFactor.cpp
lib/observables/FormFactor.h
lib/observables/GyrationRadius.cpp
lib/observables/GyrationRadius.h
lib/observables/MSD.cpp
lib/observables/MSD.h
lib/observables/ParticleAutocorrelation.cpp
lib/observables/ParticleAutocorrelation.h
lib/observables/PoreSize.cpp
lib/observables/PoreSize.h
lib/observables/RDF.cpp
lib/observables/RDF.h
lib/observables/SelfISF.cpp
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lib/observables/StructureFactor.cpp
lib/observables/StructureFactor.h
lib/observables/interfaces/SystemObservable.h
lib/observables/interfaces/TrajectoryObservable.h
lib/parsers/BaseParser.cpp
lib/parsers/BaseParser.h
lib/parsers/GroParser.cpp
lib/parsers/GroParser.h
lib/parsers/LAMMPSDataFileParser.cpp
lib/parsers/LAMMPSDataFileParser.h
lib/parsers/LAMMPSDumpParser.cpp
lib/parsers/LAMMPSDumpParser.h
lib/parsers/LJKAParser.cpp
lib/parsers/LJKAParser.h
lib/parsers/OxDNAParser.cpp
lib/parsers/OxDNAParser.h
lib/parsers/PatchyParticlesParser.cpp
lib/parsers/PatchyParticlesParser.h
lib/parsers/oxDNA_topology_parsers/DNA.cpp
lib/parsers/oxDNA_topology_parsers/DNA.h
lib/parsers/oxDNA_topology_parsers/Default.cpp
lib/parsers/oxDNA_topology_parsers/Default.h
lib/parsers/oxDNA_topology_parsers/DetailedPolymer.cpp
lib/parsers/oxDNA_topology_parsers/DetailedPolymer.h
lib/parsers/oxDNA_topology_parsers/NoTopology.cpp
lib/parsers/oxDNA_topology_parsers/NoTopology.h
lib/parsers/oxDNA_topology_parsers/TSP.cpp
lib/parsers/oxDNA_topology_parsers/TSP.h
lib/particles/Particle.cpp
lib/particles/Particle.h
lib/particles/ParticleSet.cpp
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lib/python/converters.py
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lib/python/python_glm.h
lib/python/traj.py
lib/python/utils.py
lib/topology/Topology.cpp
lib/topology/Topology.h
lib/topology/TopologyParsers.cpp
lib/topology/TopologyParsers.h
lib/trajectories/BaseTrajectory.cpp
lib/trajectories/BaseTrajectory.h
lib/trajectories/FullTrajectory.cpp
lib/trajectories/FullTrajectory.h
lib/trajectories/LazyTrajectory.cpp
lib/trajectories/LazyTrajectory.h
lib/utils/CellLists.cpp
lib/utils/CellLists.h
lib/utils/Logger.cpp
lib/utils/Logger.h
lib/utils/Random.cpp
lib/utils/Random.h
lib/utils/WaveVectorList.cpp
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lib/utils/clusters.cpp
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tests/TestSuite.py
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tests/oxDNA/single_particle/msd.dat
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