BacterialTyper/__init__.py,sha256=rH6qY24aQa97Qz6g6O_CAbTGJgL6HRa3bqCKePs3Tgg,458
BacterialTyper/config/__init__.py,sha256=hIea9Olc0I1gNPJtq3Ix4spK8RAwtYq5gvGfmTa-204,129
BacterialTyper/config/extern_progs.py,sha256=5UZoBt5OE0_6dyYqZX7aXE6MSoPqJSddZwEI8p6cBgo,6906
BacterialTyper/config/install_dependencies.py,sha256=P0zNesjRQwKflHriZqhKlghZBkJRBWzAXi9-gfA2VB4,18024
BacterialTyper/config/set_config.py,sha256=km7Ec9XNCkUBGPh-wz1XjKSzJzXuQvDKbUpe-NBz4gI,32763
BacterialTyper/config/R/R_dependencies.csv,sha256=_tm4RTJ0PcuY6IZgMpZKVZBpZwRhVEKSjiq_hFql8eE,99
BacterialTyper/config/R/R_package.info.txt,sha256=ZLSsjmCZHRv_olK1oLVc9FEdKw8yY_Efds1U68H__6E,78
BacterialTyper/config/R/check_install_path.R,sha256=u6cBViqCB8bk20PzJR-4Y5IaKY9FSxE99PVpeCYU1Zc,448
BacterialTyper/config/R/check_install_system.R,sha256=hymQIjH7gBMkVZWlp7143Z0X8GYybhUvSHC3-xaJTpo,298
BacterialTyper/config/R/install_github.R,sha256=GPVKNXPhUW5-qRjxe2eQx6Ljl5B94DLfOMZYztV1Bsc,452
BacterialTyper/config/R/install_package.R,sha256=FUcHPF4FTSWZMt0CMOLJVUDv_-V605BAbhgxK81cPKQ,405
BacterialTyper/config/perl/IslandPath_dependencies.csv,sha256=JXacKGqSLRJlSmVr574-Z4YP3dUMPw-GEvd7XuAl6XQ,1235
BacterialTyper/config/perl/install_perl_packages.py,sha256=G19v0b2GMvrNgyEZ7I6O2JvA0JAYM0b2Ctt5I3ySEUE,6040
BacterialTyper/config/perl/perl_dependencies.csv,sha256=ii8-HIRM9EKvBSORqDPA4Nqx0-T9-Ae2tQ_qjHF5Up4,413
BacterialTyper/config/python/name_conversion_module.csv,sha256=vxtYvfxAL_iZqzV1SnL21fgbOqqa4jW9aLADqkizQLM,100
BacterialTyper/config/python/python_requirements.txt,sha256=DI1SW61k7yzUkMf1LSIi227vJiteSPDN3FLhwBkR9g4,1402
BacterialTyper/config/python/python_requirements_summary.csv,sha256=XD5wNfCTDhnqUplqW8EL4ASkx68T5mn5KbjJAEACcvI,349
BacterialTyper/config/software/dependencies.csv,sha256=_e8_75mTgmEUxYWF5kfWkhHA8NMmOyUMSEB3LO9t7aE,1829
BacterialTyper/config/software/software_details.csv,sha256=imKZ29whrK6N6W02zLjcZ7tWsgFvjL2VajXFx9kOtyg,1001
BacterialTyper/data/BUSCO_dataset.csv,sha256=QcLpAf9b1I1e6d8TrDXRTXUbtfl1cmbu7LToCfzP_vM,2396
BacterialTyper/data/PubMLST_datasets.csv,sha256=3xzCqMTbYwACKPAarGuvpZkFhcMeAZyP_xrnyUnfuOI,5075
BacterialTyper/data/__init__.py,sha256=q3a_-X3_NOldCjLNpuQRhs1UaqIbADxp9p77aK703d0,72
BacterialTyper/data/__init__.pyc,sha256=f-dMeCy8Lu5oBBMZOiUxmOlCD8ByXrlgj401qSMbU3E,257
BacterialTyper/data/available_Trimmomatic_adapters.fasta,sha256=j080By8WvDEOlq89-sd46qV-fU-qZrpSTha1zDyEQHU,1448
BacterialTyper/data/available_Trimmomatic_adapters_info.csv,sha256=6MMyAodroIEeSALvGk0JomMTnSfDBsbMbgHytGv4ISI,1460
BacterialTyper/data/available_plasmids_data.txt,sha256=YmKOX3xTVjP7mQKFQzO12gGH9GOhcZ371U_YdvPAHo0,1175
BacterialTyper/data/data_files.py,sha256=WnJ0RxM5y4XW3-nfQGsl4_cwbK1Jd3qeXcr_tA9Pclo,865
BacterialTyper/data/data_files.pyc,sha256=MdOUUtQkYTyCu12ACdNj4CKdxa57U0fveabLVSxTgPU,951
BacterialTyper/data/toDownload.csv,sha256=PCEJMHtw8IQ1b701lVFurHxXtqA-V1FRNk1z--JljhY,923
BacterialTyper/modules/MGE.py,sha256=UjyXWBx22G1crCXcoFqUXTgCQ6ZonBMQ3coymU58OJs,17874
BacterialTyper/modules/__init__.py,sha256=7DEBH18QmG_aInb-4bFjJr4i51vU7jpDG2P9XjWt0UM,314
BacterialTyper/modules/annot.py,sha256=Ocstk7ksm2k8vsYTbwAK_3Z8iQ3cfYnyT3o623oSx8s,11483
BacterialTyper/modules/assemble.py,sha256=KzzHGuJCxihyxp8UsXZU2I_1A7J-yGGaC2LyR3sQqEM,13678
BacterialTyper/modules/citation.py,sha256=PMz-xYj5f9fLclo6Z9u9gvOwWH3_jkVgE4n40g2or-c,5172
BacterialTyper/modules/cluster.py,sha256=R-YEIY0o3V-WvpOK5ptH_c-8vf6yIQKHNQMXbQN5Nvo,14698
BacterialTyper/modules/config.py,sha256=kpmM0aLQeWIjkIQtPFaz0vMKh1ZOTFyLrfEAfAREd4s,8970
BacterialTyper/modules/database.py,sha256=C0Kh3Gx9GM7a0iSQWIBTVjcpAujiQRkcM0x4_ij8mNc,12796
BacterialTyper/modules/help_info.py,sha256=22VxPsUNbwKftcoo1QLFx_R3fALyYaDS-iuz7nSS714,11831
BacterialTyper/modules/ident.py,sha256=kYYA1n-dYjicRqQt_QDzImYSSOISHZbY6SPdhk-d2jU,58224
BacterialTyper/modules/metadata.py,sha256=LwEGF28Tso-VYHSyb-m2C2ymu9lZYNMEC6UiglaS26U,957
BacterialTyper/modules/phylo.py,sha256=OUz06uqBaCc_Hi5pR0myqNfjUOOJcajEOrnUOET_qGk,17769
BacterialTyper/modules/prep.py,sha256=ANzyqMkbhRUuodf5xOTZ2OtXzGPm6O6gn3AGLwBGxHw,11319
BacterialTyper/modules/profile.py,sha256=_PSCqmTGiO15gSp1t4HOtSl5feVVkh_XT2qGlGLqPCc,35050
BacterialTyper/modules/qc.py,sha256=a-CkP8ssmSviDFRsC8uaI098axWcyk7hBD7cULD2YWw,16377
BacterialTyper/modules/report_generation.py,sha256=Kq4ldrw9ywWkA_GGF2oLseHd2Ti1qiHmwS6Ic3eJaeY,17839
BacterialTyper/modules/run.py,sha256=LEkPawjcbKMBeN0_Xd2s1A8YhmnppbgsRUSlkm1Ope8,2483
BacterialTyper/modules/test.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
BacterialTyper/modules/trim.py,sha256=PLPj2MVT9AGnqmle-TKb801Lo-4PNwQbMFDJld8AIzE,9494
BacterialTyper/modules/version.py,sha256=YgoHwdWSJDPWt6nupqN7x-6fcxyo-fkja58CRY4Dy9Q,2251
BacterialTyper/other_tools/__init__.py,sha256=sY9mNwxR2WzybXb1xtNJKqy83EgyuQUEnKRnWxOGwu0,66
BacterialTyper/other_tools/tools.py,sha256=h3aVf1iVz-5tSNjBWgVn07cxxr7-ic9HwoyJHkntxrg,1661
BacterialTyper/report/__init__.py,sha256=jTlj3UNLfef7O9eek2DeckiTIoyTEHAce8pTzR5Kr4U,105
BacterialTyper/report/get_promoter.py,sha256=4IAancFpdGRvgIh6WYoeDVJbRZKo3wdAFSMnJEdAfyI,3466
BacterialTyper/report/retrieve_genes.py,sha256=3j8Dq_dZaVIbIouYDHIFjd7eOPwbHbttcLtugxm9st4,7005
BacterialTyper/report/Staphylococcus/__init__.py,sha256=Gz9uIdLufSPaPJzXqa6Hyq-ItHLgdULNrfJ8ec8Nv1M,114
BacterialTyper/report/Staphylococcus/agr_typing.py,sha256=jrNJzvu37qMpg-McutErbBxj0aFCGHJvgGP65uuIiHQ,9937
BacterialTyper/report/Staphylococcus/get_sccmec.py,sha256=plL4_FkOEYVJC0F020oJMtjEq8iGt_I5hw6NwAACqRc,5158
BacterialTyper/report/Staphylococcus/get_spa_typing.py,sha256=jogS2-EnQAkUevIZgLxcwjX1OLKytPEI14JsW6tHA50,8376
BacterialTyper/scripts/BUSCO_caller.py,sha256=vxT5TrYlXeQFdh9khn95NdnUWkwabwOS1-1lYOxhlpM,21510
BacterialTyper/scripts/KMA_caller.py,sha256=_WQZhGnqvdpBTuQU2YcN9cf8TyokM7UDpX0Z1AfYwiA,29444
BacterialTyper/scripts/MLST_caller.py,sha256=g8Q0sszXnzLAQX5b6TQ_uTUxWP7D6fN6mmO5bMa3gBQ,4404
BacterialTyper/scripts/__init__.py,sha256=gUfywhecHLmArnRYIdG6sCGb-8IAiEkMr1OQhjsKFvE,615
BacterialTyper/scripts/amrfinder_caller.py,sha256=VyoV8Cnt0q2lv-vQkkv8P-GpfoX9Is6BqCmBCbI3PSo,8218
BacterialTyper/scripts/annotation.py,sha256=tbQZhRqvE8si6s5hFPIGYRkHIEdUCgUf1Q2XjoBEkPs,7162
BacterialTyper/scripts/argnorm_caller.py,sha256=G6oYzsiw4rPcvFzwqATZ05mcT4-jOMmLC9vPwhmEdng,1517
BacterialTyper/scripts/ariba_caller.py,sha256=FW7o-7Biw7JO3En3J_mZfpM6CcYWe0HBcY-3P0sJM5A,28635
BacterialTyper/scripts/assembly_stats_caller.py,sha256=_52e5DnwLPDaKp93N9ejTH8fPDIqru4B9sjRyQeuX0c,3203
BacterialTyper/scripts/bacteriophage.py,sha256=P4HFP0YrGrvLGckTxYHk12XPSYqWYGBABCP0FUi4N20,16179
BacterialTyper/scripts/card_trick_caller.py,sha256=ZbAbzXzaY3gu8R2w6yFSFUCLU7KcS1BlupVDSs-I8KQ,2933
BacterialTyper/scripts/database_generator.py,sha256=h3uwTp9VLd7HNQrzio4RuPpVj0kjOHkMnvFK0l2GRvY,34495
BacterialTyper/scripts/database_user.py,sha256=Pn9P7U-pNzOuYuKC6z8JkZ-DknAV1MtpAKf4wtWit8k,18367
BacterialTyper/scripts/edirect_caller.py,sha256=dEu9SZX9OKpjdt2C1zGzYWgc9bkxWxyz-lnWgWS8Qg0,3248
BacterialTyper/scripts/fastqc_caller.py,sha256=HTxqiYEXQZBIwFwzJ4Wy57LYAFyAuwVMwe7dW-sL-8E,2815
BacterialTyper/scripts/functions.py,sha256=ZvZyBc025KxJ_0D-Sps32tnYZs1Cf1hT-MbLBrjBlHU,18564
BacterialTyper/scripts/genomic_island.py,sha256=HHg7l3PpVXvH80dtM6I94fzlcpWA7wEKO69fZ3tBWkM,4253
BacterialTyper/scripts/get_descendant.py,sha256=9UnpiqL_pCX23x4tdebXbDv-t9h74FN860VmDW5nClY,1578
BacterialTyper/scripts/kraken2_caller.py,sha256=kkiNO7Nuq8emfLef8vMiCsNcyjk9nyeMYo67js3NHIQ,8664
BacterialTyper/scripts/min_hash_caller.py,sha256=Yir0WpKxbsNQgw-fUByXxqWog0DyT8KlBHcVNSl9AtQ,14867
BacterialTyper/scripts/multiQC_report.py,sha256=l6NRyd31oc8-rdz7MEJxpoWI6nFdvDuvY3FLA8xYGcg,6611
BacterialTyper/scripts/phylo_parser.py,sha256=M7AifjSKjgVoVviG9Z5vv2hb8wWhabr632QD8irYdzw,6547
BacterialTyper/scripts/plasmidID_call.py,sha256=RebfbA2uaWnzMXh-aKP0JjyJj0DYRyUixpiWAEpXRno,9499
BacterialTyper/scripts/spades_assembler.py,sha256=7oRcpq48Fh_p6QSBunpnvs9kewM1fBTgUTYKCdBjvlM,17721
BacterialTyper/scripts/trimmomatic_call.py,sha256=y8vyGoKkLtPDK7sOqXSdFI7KhRkOavW4H6IUUREn8Ls,7095
BacterialTyper/scripts/variant_calling.py,sha256=dmOXKld4iLstQxaq9K3cAaFqgKMg0Anrvit-bu02P-Q,4721
BacterialTyper/scripts/virulence_resistance.py,sha256=HZRPlwt7fYJ_CDIY8bPqoS_1m-7zv5vy-BZ2Ma7t4Bw,24071
BacterialTyper-0.6.7.data/scripts/BacterialTyper,sha256=G6jHY4Q5Ku9ftzovJ34D2i5qjJLfFxoxP3Kn0LwS25U,64913
BacterialTyper-0.6.7.dist-info/LICENSE,sha256=7YGLBmsHQOiI6hXZJF7Shj9u4qUMgXCqBjxCjq1e1Kc,1072
BacterialTyper-0.6.7.dist-info/METADATA,sha256=dq13AxCqrwzL66Hwb4AfyqF1pQUjrPuzhrfpBAmyyRQ,4981
BacterialTyper-0.6.7.dist-info/WHEEL,sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA,92
BacterialTyper-0.6.7.dist-info/top_level.txt,sha256=P7QmD_uw_iM9vug5DhAdZwSnS3e-jTJUDs331X9LFPw,15
BacterialTyper-0.6.7.dist-info/RECORD,,
