Metadata-Version: 2.1
Name: bacdive
Version: 0.0.0
Summary: Python API Interface for DSMZ BacDive
Home-page: UNKNOWN
Author: BacDivePy development team
Author-email: cameronmartino@gmail.com
Maintainer: BacDivePy development team
Maintainer-email: cameronmartino@gmail.com
License: BSD
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: BSD License
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Operating System :: Unix
Classifier: Operating System :: POSIX
Classifier: Operating System :: MacOS :: MacOS X
Description-Content-Type: text/markdown
Requires-Dist: numpy
Requires-Dist: IPython (>=3.2.0)
Requires-Dist: matplotlib (>=1.4.3)
Requires-Dist: numpy (>=1.12.1)
Requires-Dist: pandas (>=0.10.0)
Requires-Dist: scipy (>=0.19.1)
Requires-Dist: nose (>=1.3.7)
Requires-Dist: scikit-bio (>=0.5.1)
Requires-Dist: seaborn (>=0.9.0)
Requires-Dist: tqdm

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# BacDivePy

A python interface for the [Bacterial Diversity Metadatabase][BD] ([Söhngen et al. 2014 & 2016](#references)) of the [DSMZ (German Collection of Microorganisms and Cell Cultures)][DMSZ]. BacDivePy is modeled after [BacDiveR](https://github.com/TIBHannover/BacDiveR)

[BD]: https://bacdive.dsmz.de/
[DMSZ]: https://www.dsmz.de/about-us.html
[reg]: https://bacdive.dsmz.de/api/bacdive/registration/register/

## Installation

    pip install git+https://github.com/cameronmartino/BacDivePy.git

## Tutorials

* [Login and Example Use](https://github.com/cameronmartino/BacDivePy/blob/master/Doc/login_and_searching.ipynb)

## References

* Söhngen, Carola, Boyke Bunk, Adam Podstawka, Dorothea Gleim, and Jörg
Overmann. 2014. “BacDive—the Bacterial Diversity Metadatabase.” *Nucleic
Acids Research* 42 (D1): D592–D599.
[doi:10.1093/nar/gkt1058](https://doi.org/10.1093/nar/gkt1058).

* Söhngen, Carola, Adam Podstawka, Boyke Bunk, Dorothea Gleim, Anna
Vetcininova, Lorenz Christian Reimer, Christian Ebeling, Cezar
Pendarovski, and Jörg Overmann. 2016. “BacDive – the Bacterial Diversity
Metadatabase in 2016.” *Nucleic Acids Research* 44 (D1): D581–D585.
[doi:10.1093/nar/gkv983](https://doi.org/10.1093/nar/gkv983).

* [BacDiveR](https://github.com/TIBHannover/BacDiveR)


