LICENSE
MANIFEST.in
README.md
pyproject.toml
babappai/__init__.py
babappai/cli.py
babappai/encoding.py
babappai/identifiability.py
babappai/inference.py
babappai/interpret.py
babappai/metadata.py
babappai/model_manager.py
babappai/models.py
babappai/py.typed
babappai/run_pipeline.py
babappai/tree.py
babappai/tree_calibration.py
babappai/tree_neutral.py
babappai/utils.py
babappai.egg-info/PKG-INFO
babappai.egg-info/SOURCES.txt
babappai.egg-info/dependency_links.txt
babappai.egg-info/entry_points.txt
babappai.egg-info/requires.txt
babappai.egg-info/top_level.txt
babappai/assets/__init__.py
babappai/assets/metadata.json
babappai/calibration/__init__.py
babappai/calibration/neutral_generator_adapter.py
babappai/data/__init__.py
babappai/data/neutral_reference_frozen.json
babappai/validation/__init__.py
babappai/validation/empirical_validation.py
babappai/validation/orthogroup_qc.py
babappai/validation/orthogroup_selection.py
babappai/validation/simulator_adapter.py
babappai/validation/synthetic_validation.py
babappai/validation/validation_plots.py
babappai/validation/validation_reporting.py
babappaomega/__init__.py
babappaomega/calibration.py
babappaomega/cli.py
babappaomega/encoding.py
babappaomega/identifiability.py
babappaomega/inference.py
babappaomega/interpret.py
babappaomega/metadata.py
babappaomega/models.py
babappaomega/py.typed
babappaomega/tree.py
babappaomega/tree_calibration.py
babappaomega/tree_neutral.py
babappaomega/utils.py
babappaomega/assets/__init__.py
babappaomega/assets/metadata.json
babappaomega/data/__init__.py
babappaomega/data/neutral_reference_frozen.json
tests/test_adapters.py
tests/test_cli.py
tests/test_identifiability.py
tests/test_model_manager.py
tests/test_orthogroup_selection.py
tests/test_package_alias.py
tests/test_validation_report.py