# Changelog

## [1.0.0rc2] - 2026-03-19

- Aligned core statistic with manuscript: gene score is now the sample variance of site energies.
- Applied Gaussian smoothing consistently across training, observed-gene scoring, and null calibration replicates.
- Added deterministic context-derived seed schedule (including site index) for reproducible train/obs/calibration smoothing and simulation.
- Fixed sensitivity-analysis scenario config isolation (no cross-scenario mutation).
- Updated package metadata URLs and installation docs to point to the real repository.
- Added tests for dispersion-statistic definition and deterministic scoring reproducibility.

## [1.0.0rc1] - 2026-03-19

- Initial production candidate implementation.
- Added end-to-end CLI workflow (`init`, `validate`, `fit-null`, `score`, `adjust`, `report`, `benchmark`, `demo`, `doctor`).
- Added codon IO/QC, representation/smoothing, null simulation, frozen energy bundle fitting, exact Monte Carlo inference, multiple-testing correction, reporting, and benchmark tracks.
- Added docs, examples, tests, and CI workflows for lint/test/build/release.
