MANIFEST.in
README.md
pyproject.toml
setup.py
AxSI.egg-info/PKG-INFO
AxSI.egg-info/SOURCES.txt
AxSI.egg-info/dependency_links.txt
AxSI.egg-info/entry_points.txt
AxSI.egg-info/requires.txt
AxSI.egg-info/top_level.txt
axsi_tests/__init__.py
axsi_tests/test_axsi.py
axsi_tests/test_runner.py
axsi_tests/prepare_toy_test_files/__init__.py
axsi_tests/prepare_toy_test_files/extract_timeframes.py
axsi_tests/prepare_toy_test_files/extract_voxels.py
axsi_tests/test_data/input_files/voxels_50_52_bval.txt
axsi_tests/test_data/input_files/voxels_50_52_bvec.txt
axsi_tests/test_data/input_files/voxels_50_52_data.nii
axsi_tests/test_data/input_files/voxels_50_52_mask.nii
axsi_tests/test_data/output_files/expected_outputs/CMDfh.nii.gz
axsi_tests/test_data/output_files/expected_outputs/CMDfr.nii.gz
axsi_tests/test_data/output_files/expected_outputs/dt.nii.gz
axsi_tests/test_data/output_files/expected_outputs/eigval.nii.gz
axsi_tests/test_data/output_files/expected_outputs/eigvec.nii.gz
axsi_tests/test_data/output_files/expected_outputs/fa.nii.gz
axsi_tests/test_data/output_files/expected_outputs/md.nii.gz
axsi_tests/test_data/output_files/expected_outputs/pasi.nii.gz
axsi_tests/test_data/output_files/expected_outputs/paxsi.nii.gz
axsi_tests/test_data/output_files/expected_outputs/pcsf.nii.gz
axsi_tests/test_data/output_files/expected_outputs/pfr.nii.gz
axsi_tests/test_data/output_files/expected_outputs/ph.nii.gz
docs/usage.rst
src/axsi/__init__.py
src/axsi/ax_dti.py
src/axsi/axsi.py
src/axsi/calc_axsi-old-version.py
src/axsi/calc_axsi.py
src/axsi/config.py
src/axsi/linear_lsq.py
src/axsi/linear_lsq_rserver.py
src/axsi/matrix_operations.py
src/axsi/mri_scan.py
src/axsi/non_linear_lsq.py
src/axsi/predictions.py
src/axsi/set_r_env_variables.py
src/axsi/toolbox.py
src/axsi/cli/__init__.py
src/axsi/cli/axsi_install_r.py
src/axsi/cli/axsi_main.py
src/axsi/cli/axsi_nifti_viewer.py