.clang-format
.clang-tidy
.clang-tidy-ignore
.codacy.yaml
.gitignore
.misspell-fixer.ignore
.pre-commit-config.yaml
CITATION.cff
CMakeLists.txt
CODE_OF_CONDUCT.md
CONTRIBUTING.md
CTestConfig.cmake
LICENSE
PRIVACY.md
README.md
SECURITY.md
STYLE.md
pyproject.toml
setup.py
.github/FUNDING.yml
.github/PULL_REQUEST_TEMPLATE
.github/codeql-config.yml
.github/config.yml
.github/dependabot.yml
.github/release-drafter.yml
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/actions/checkout-repositories/action.yml
.github/actions/upload-release/action.yml
.github/workflows/add_artifact_urls.yml
.github/workflows/build_flatpak.yml
.github/workflows/build_linux.yml
.github/workflows/build_linux_arm64.yml
.github/workflows/build_mac.yml
.github/workflows/build_wheels.yml
.github/workflows/build_win_arm.yml
.github/workflows/build_windows.yml
.github/workflows/clang-format-check.yml
.github/workflows/clang-tidy.yml
.github/workflows/codacy.yml
.github/workflows/release-drafter.yml
.github/workflows/scorecard.yml
.github/workflows/update-i18n-templates.yml
avogadro/CMakeLists.txt
avogadro.egg-info/PKG-INFO
avogadro.egg-info/SOURCES.txt
avogadro.egg-info/dependency_links.txt
avogadro.egg-info/top_level.txt
avogadro/calc/CMakeLists.txt
avogadro/calc/chargemanager.cpp
avogadro/calc/chargemanager.h
avogadro/calc/chargemodel.cpp
avogadro/calc/chargemodel.h
avogadro/calc/defaultmodel.cpp
avogadro/calc/defaultmodel.h
avogadro/calc/energycalculator.cpp
avogadro/calc/energycalculator.h
avogadro/calc/energymanager.cpp
avogadro/calc/energymanager.h
avogadro/calc/gradients.h
avogadro/calc/lennardjones.cpp
avogadro/calc/lennardjones.h
avogadro/calc/lennardjonesdata.h
avogadro/calc/uff.cpp
avogadro/calc/uff.h
avogadro/calc/uffdata.h
avogadro/command/CMakeLists.txt
avogadro/command/avobabel.cpp
avogadro/command/cjsontocml.cpp
avogadro/command/qube.cpp
avogadro/core/CMakeLists.txt
avogadro/core/angleiterator.cpp
avogadro/core/angleiterator.h
avogadro/core/angletools.h
avogadro/core/array.h
avogadro/core/atom.h
avogadro/core/atomtyper-inline.h
avogadro/core/atomtyper.h
avogadro/core/atomutilities.cpp
avogadro/core/atomutilities.h
avogadro/core/avogadrocore.h
avogadro/core/avospglib.cpp
avogadro/core/avospglib.h
avogadro/core/basisset.h
avogadro/core/bond.h
avogadro/core/color3f.h
avogadro/core/constraint.h
avogadro/core/contrastcolor.h
avogadro/core/coordinateblockgenerator.cpp
avogadro/core/coordinateblockgenerator.h
avogadro/core/coordinateset.h
avogadro/core/crystaltools.cpp
avogadro/core/crystaltools.h
avogadro/core/cube.cpp
avogadro/core/cube.h
avogadro/core/dihedraliterator.cpp
avogadro/core/dihedraliterator.h
avogadro/core/elementdata.h
avogadro/core/elements.cpp
avogadro/core/elements.h
avogadro/core/gaussianset.cpp
avogadro/core/gaussianset.h
avogadro/core/gaussiansettools.cpp
avogadro/core/gaussiansettools.h
avogadro/core/graph.cpp
avogadro/core/graph.h
avogadro/core/internalcoordinates.cpp
avogadro/core/internalcoordinates.h
avogadro/core/layer.cpp
avogadro/core/layer.h
avogadro/core/layermanager.cpp
avogadro/core/layermanager.h
avogadro/core/matrix.h
avogadro/core/mdlvalence_p.h
avogadro/core/mesh.cpp
avogadro/core/mesh.h
avogadro/core/molecule.cpp
avogadro/core/molecule.h
avogadro/core/mutex.cpp
avogadro/core/mutex.h
avogadro/core/nameatomtyper.cpp
avogadro/core/nameatomtyper.h
avogadro/core/neighborperceiver.cpp
avogadro/core/neighborperceiver.h
avogadro/core/residue.cpp
avogadro/core/residue.h
avogadro/core/residuecolors.h
avogadro/core/residuedata.h
avogadro/core/ringperceiver.cpp
avogadro/core/ringperceiver.h
avogadro/core/secondarystructure.cpp
avogadro/core/secondarystructure.h
avogadro/core/sharedmutex.cpp
avogadro/core/sharedmutex.h
avogadro/core/slaterset.cpp
avogadro/core/slaterset.h
avogadro/core/slatersettools.cpp
avogadro/core/slatersettools.h
avogadro/core/spacegroupdata.h
avogadro/core/spacegroups.cpp
avogadro/core/spacegroups.h
avogadro/core/symbolatomtyper.cpp
avogadro/core/symbolatomtyper.h
avogadro/core/types.h
avogadro/core/unitcell.cpp
avogadro/core/unitcell.h
avogadro/core/utilities.h
avogadro/core/variant-inline.h
avogadro/core/variant.h
avogadro/core/variantmap.cpp
avogadro/core/variantmap.h
avogadro/core/vector.h
avogadro/core/version.cpp
avogadro/io/CMakeLists.txt
avogadro/io/cjsonformat.cpp
avogadro/io/cjsonformat.h
avogadro/io/cmlformat.cpp
avogadro/io/cmlformat.h
avogadro/io/cmsgpackformat.cpp
avogadro/io/cmsgpackformat.h
avogadro/io/dcdformat.cpp
avogadro/io/dcdformat.h
avogadro/io/fileformat.cpp
avogadro/io/fileformat.h
avogadro/io/fileformatmanager.cpp
avogadro/io/fileformatmanager.h
avogadro/io/gromacsformat.cpp
avogadro/io/gromacsformat.h
avogadro/io/hdf5dataformat.cpp
avogadro/io/hdf5dataformat.h
avogadro/io/lammpsformat.cpp
avogadro/io/lammpsformat.h
avogadro/io/mdlformat.cpp
avogadro/io/mdlformat.h
avogadro/io/mmtfformat.cpp
avogadro/io/mmtfformat.h
avogadro/io/pdbformat.cpp
avogadro/io/pdbformat.h
avogadro/io/sdfformat.cpp
avogadro/io/sdfformat.h
avogadro/io/trrformat.cpp
avogadro/io/trrformat.h
avogadro/io/turbomoleformat.cpp
avogadro/io/turbomoleformat.h
avogadro/io/vaspformat.cpp
avogadro/io/vaspformat.h
avogadro/io/xyzformat.cpp
avogadro/io/xyzformat.h
avogadro/molequeue/CMakeLists.txt
avogadro/molequeue/batchjob.cpp
avogadro/molequeue/batchjob.h
avogadro/molequeue/inputgenerator.cpp
avogadro/molequeue/inputgenerator.h
avogadro/molequeue/inputgeneratordialog.cpp
avogadro/molequeue/inputgeneratordialog.h
avogadro/molequeue/inputgeneratordialog.ui
avogadro/molequeue/inputgeneratorwidget.cpp
avogadro/molequeue/inputgeneratorwidget.h
avogadro/molequeue/inputgeneratorwidget.ui
avogadro/molequeue/molequeuedialog.cpp
avogadro/molequeue/molequeuedialog.h
avogadro/molequeue/molequeuedialog.ui
avogadro/molequeue/molequeuemanager.cpp
avogadro/molequeue/molequeuemanager.h
avogadro/molequeue/molequeuequeuelistmodel.cpp
avogadro/molequeue/molequeuequeuelistmodel.h
avogadro/molequeue/molequeuewidget.cpp
avogadro/molequeue/molequeuewidget.h
avogadro/molequeue/molequeuewidget.ui
avogadro/molequeue/client/client.cpp
avogadro/molequeue/client/client.h
avogadro/molequeue/client/jobobject.cpp
avogadro/molequeue/client/jobobject.h
avogadro/molequeue/client/jsonrpcclient.cpp
avogadro/molequeue/client/jsonrpcclient.h
avogadro/qtgui/CMakeLists.txt
avogadro/qtgui/backgroundfileformat.cpp
avogadro/qtgui/backgroundfileformat.h
avogadro/qtgui/chartdialog.cpp
avogadro/qtgui/chartdialog.h
avogadro/qtgui/chartwidget.cpp
avogadro/qtgui/chartwidget.h
avogadro/qtgui/colorbutton.cpp
avogadro/qtgui/colorbutton.h
avogadro/qtgui/containerwidget.cpp
avogadro/qtgui/containerwidget.h
avogadro/qtgui/customelementdialog.cpp
avogadro/qtgui/customelementdialog.h
avogadro/qtgui/customelementdialog.ui
avogadro/qtgui/elementdetail_p.cpp
avogadro/qtgui/elementdetail_p.h
avogadro/qtgui/elementitem_p.cpp
avogadro/qtgui/elementitem_p.h
avogadro/qtgui/elementtranslator.cpp
avogadro/qtgui/elementtranslator.h
avogadro/qtgui/extensionplugin.cpp
avogadro/qtgui/extensionplugin.h
avogadro/qtgui/filebrowsewidget.cpp
avogadro/qtgui/filebrowsewidget.h
avogadro/qtgui/fileformatdialog.cpp
avogadro/qtgui/fileformatdialog.h
avogadro/qtgui/gaussiansetconcurrent.cpp
avogadro/qtgui/gaussiansetconcurrent.h
avogadro/qtgui/generichighlighter.cpp
avogadro/qtgui/generichighlighter.h
avogadro/qtgui/hydrogentools.cpp
avogadro/qtgui/hydrogentools.h
avogadro/qtgui/insertfragmentdialog.cpp
avogadro/qtgui/insertfragmentdialog.h
avogadro/qtgui/insertfragmentdialog.ui
avogadro/qtgui/interfacescript.cpp
avogadro/qtgui/interfacescript.h
avogadro/qtgui/interfacewidget.cpp
avogadro/qtgui/interfacewidget.h
avogadro/qtgui/jsonwidget.cpp
avogadro/qtgui/jsonwidget.h
avogadro/qtgui/layermodel.cpp
avogadro/qtgui/layermodel.h
avogadro/qtgui/meshgenerator.cpp
avogadro/qtgui/meshgenerator.h
avogadro/qtgui/molecule.cpp
avogadro/qtgui/molecule.h
avogadro/qtgui/moleculemodel.cpp
avogadro/qtgui/moleculemodel.h
avogadro/qtgui/multiviewwidget.cpp
avogadro/qtgui/multiviewwidget.h
avogadro/qtgui/periodictablescene_p.cpp
avogadro/qtgui/periodictablescene_p.h
avogadro/qtgui/periodictableview.cpp
avogadro/qtgui/periodictableview.h
avogadro/qtgui/persistentatom.h
avogadro/qtgui/persistentbond.h
avogadro/qtgui/pluginlayermanager.cpp
avogadro/qtgui/pluginlayermanager.h
avogadro/qtgui/pythonscript.cpp
avogadro/qtgui/pythonscript.h
avogadro/qtgui/qtgui.qrc
avogadro/qtgui/richtextdelegate.cpp
avogadro/qtgui/richtextdelegate.h
avogadro/qtgui/rwlayermanager.cpp
avogadro/qtgui/rwlayermanager.h
avogadro/qtgui/rwmolecule.cpp
avogadro/qtgui/rwmolecule.h
avogadro/qtgui/rwmolecule_undo.h
avogadro/qtgui/sceneplugin.cpp
avogadro/qtgui/sceneplugin.h
avogadro/qtgui/scenepluginmodel.cpp
avogadro/qtgui/scenepluginmodel.h
avogadro/qtgui/scriptloader.cpp
avogadro/qtgui/scriptloader.h
avogadro/qtgui/slatersetconcurrent.cpp
avogadro/qtgui/slatersetconcurrent.h
avogadro/qtgui/sortfiltertreeproxymodel.cpp
avogadro/qtgui/sortfiltertreeproxymodel.h
avogadro/qtgui/timedprogressdialog.cpp
avogadro/qtgui/timedprogressdialog.h
avogadro/qtgui/toolplugin.cpp
avogadro/qtgui/toolplugin.h
avogadro/qtgui/utilities.cpp
avogadro/qtgui/utilities.h
avogadro/qtgui/viewfactory.cpp
avogadro/qtgui/viewfactory.h
avogadro/qtgui/icons/colormap/balance.png
avogadro/qtgui/icons/colormap/balance@2x.png
avogadro/qtgui/icons/colormap/bluedarkred.png
avogadro/qtgui/icons/colormap/bluedarkred@2x.png
avogadro/qtgui/icons/colormap/cividis.png
avogadro/qtgui/icons/colormap/cividis@2x.png
avogadro/qtgui/icons/colormap/coolwarm.png
avogadro/qtgui/icons/colormap/coolwarm@2x.png
avogadro/qtgui/icons/colormap/gray.png
avogadro/qtgui/icons/colormap/gray@2x.png
avogadro/qtgui/icons/colormap/hot.png
avogadro/qtgui/icons/colormap/hot@2x.png
avogadro/qtgui/icons/colormap/inferno.png
avogadro/qtgui/icons/colormap/inferno@2x.png
avogadro/qtgui/icons/colormap/magma.png
avogadro/qtgui/icons/colormap/magma@2x.png
avogadro/qtgui/icons/colormap/parula.png
avogadro/qtgui/icons/colormap/parula@2x.png
avogadro/qtgui/icons/colormap/plasma.png
avogadro/qtgui/icons/colormap/plasma@2x.png
avogadro/qtgui/icons/colormap/spectral.png
avogadro/qtgui/icons/colormap/spectral@2x.png
avogadro/qtgui/icons/colormap/turbo.png
avogadro/qtgui/icons/colormap/turbo@2x.png
avogadro/qtgui/icons/colormap/viridis.png
avogadro/qtgui/icons/colormap/viridis@2x.png
avogadro/qtgui/icons/fallback/index.theme
avogadro/qtgui/icons/fallback/32x32/cross-dark.png
avogadro/qtgui/icons/fallback/32x32/cross-light.png
avogadro/qtgui/icons/fallback/32x32/dashed-preview-dark.png
avogadro/qtgui/icons/fallback/32x32/dashed-preview-light.png
avogadro/qtgui/icons/fallback/32x32/document-close.png
avogadro/qtgui/icons/fallback/32x32/document-export.png
avogadro/qtgui/icons/fallback/32x32/document-import.png
avogadro/qtgui/icons/fallback/32x32/document-new.png
avogadro/qtgui/icons/fallback/32x32/document-open-recent.png
avogadro/qtgui/icons/fallback/32x32/document-open.png
avogadro/qtgui/icons/fallback/32x32/document-save-all.png
avogadro/qtgui/icons/fallback/32x32/document-save-as.png
avogadro/qtgui/icons/fallback/32x32/document-save.png
avogadro/qtgui/icons/fallback/32x32/dots-dark.png
avogadro/qtgui/icons/fallback/32x32/dots-light.png
avogadro/qtgui/icons/fallback/32x32/edit-add.png
avogadro/qtgui/icons/fallback/32x32/edit-copy.png
avogadro/qtgui/icons/fallback/32x32/edit-cut.png
avogadro/qtgui/icons/fallback/32x32/edit-delete.png
avogadro/qtgui/icons/fallback/32x32/edit-paste.png
avogadro/qtgui/icons/fallback/32x32/help-about.png
avogadro/qtgui/icons/fallback/32x32/lock-dark.png
avogadro/qtgui/icons/fallback/32x32/lock-light.png
avogadro/qtgui/icons/fallback/32x32/lock-open-dark.png
avogadro/qtgui/icons/fallback/32x32/lock-open-light.png
avogadro/qtgui/icons/fallback/32x32/plus-dark.png
avogadro/qtgui/icons/fallback/32x32/plus-light.png
avogadro/qtgui/icons/fallback/32x32/preview-dark.png
avogadro/qtgui/icons/fallback/32x32/preview-light.png
avogadro/qtgui/icons/fallback/64x64/document-close.png
avogadro/qtgui/icons/fallback/64x64/document-export.png
avogadro/qtgui/icons/fallback/64x64/document-import.png
avogadro/qtgui/icons/fallback/64x64/document-new.png
avogadro/qtgui/icons/fallback/64x64/document-open-recent.png
avogadro/qtgui/icons/fallback/64x64/document-open.png
avogadro/qtgui/icons/fallback/64x64/document-save-all.png
avogadro/qtgui/icons/fallback/64x64/document-save-as.png
avogadro/qtgui/icons/fallback/64x64/document-save.png
avogadro/qtgui/icons/fallback/64x64/edit-copy.png
avogadro/qtgui/icons/fallback/64x64/edit-cut.png
avogadro/qtgui/icons/fallback/64x64/edit-paste.png
avogadro/qtgui/icons/fallback/64x64/help-about.png
avogadro/qtopengl/CMakeLists.txt
avogadro/qtopengl/activeobjects.cpp
avogadro/qtopengl/activeobjects.h
avogadro/qtopengl/glwidget.cpp
avogadro/qtopengl/glwidget.h
avogadro/qtopengl/qttextrenderstrategy.cpp
avogadro/qtopengl/qttextrenderstrategy.h
avogadro/qtplugins/CMakeLists.txt
avogadro/qtplugins/pluginfactory.h
avogadro/qtplugins/pluginmanager.cpp
avogadro/qtplugins/pluginmanager.h
avogadro/qtplugins/3dmol/3dmol.cpp
avogadro/qtplugins/3dmol/3dmol.h
avogadro/qtplugins/3dmol/3dmoldialog.cpp
avogadro/qtplugins/3dmol/3dmoldialog.h
avogadro/qtplugins/3dmol/3dmoldialog.ui
avogadro/qtplugins/3dmol/CMakeLists.txt
avogadro/qtplugins/alchemy/CMakeLists.txt
avogadro/qtplugins/alchemy/alchemy.cpp
avogadro/qtplugins/alchemy/alchemy.h
avogadro/qtplugins/aligntool/CMakeLists.txt
avogadro/qtplugins/aligntool/align_dark.svg
avogadro/qtplugins/aligntool/align_light.svg
avogadro/qtplugins/aligntool/aligntool.cpp
avogadro/qtplugins/aligntool/aligntool.h
avogadro/qtplugins/aligntool/aligntool.qrc
avogadro/qtplugins/apbs/CMakeLists.txt
avogadro/qtplugins/apbs/apbs.cpp
avogadro/qtplugins/apbs/apbs.h
avogadro/qtplugins/apbs/apbsdialog.cpp
avogadro/qtplugins/apbs/apbsdialog.h
avogadro/qtplugins/apbs/apbsdialog.ui
avogadro/qtplugins/apbs/apbsoutputdialog.cpp
avogadro/qtplugins/apbs/apbsoutputdialog.h
avogadro/qtplugins/apbs/apbsoutputdialog.ui
avogadro/qtplugins/apbs/opendxreader.cpp
avogadro/qtplugins/apbs/opendxreader.h
avogadro/qtplugins/applycolors/CMakeLists.txt
avogadro/qtplugins/applycolors/applycolors.cpp
avogadro/qtplugins/applycolors/applycolors.h
avogadro/qtplugins/applycolors/chargedialog.ui
avogadro/qtplugins/autoopt/CMakeLists.txt
avogadro/qtplugins/autoopt/autoopt.cpp
avogadro/qtplugins/autoopt/autoopt.h
avogadro/qtplugins/autoopt/autoopt.qrc
avogadro/qtplugins/autoopt/autoopt.svg
avogadro/qtplugins/ballandstick/CMakeLists.txt
avogadro/qtplugins/ballandstick/ballandstick.cpp
avogadro/qtplugins/ballandstick/ballandstick.h
avogadro/qtplugins/bondcentrictool/CMakeLists.txt
avogadro/qtplugins/bondcentrictool/bondcentric_dark.svg
avogadro/qtplugins/bondcentrictool/bondcentric_light.svg
avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp
avogadro/qtplugins/bondcentrictool/bondcentrictool.h
avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc
avogadro/qtplugins/bonding/CMakeLists.txt
avogadro/qtplugins/bonding/bonding.cpp
avogadro/qtplugins/bonding/bonding.h
avogadro/qtplugins/bonding/bondingdialog.ui
avogadro/qtplugins/cartoons/CMakeLists.txt
avogadro/qtplugins/cartoons/cartoons.cpp
avogadro/qtplugins/cartoons/cartoons.h
avogadro/qtplugins/centroid/CMakeLists.txt
avogadro/qtplugins/centroid/centroid.cpp
avogadro/qtplugins/centroid/centroid.h
avogadro/qtplugins/closecontacts/CMakeLists.txt
avogadro/qtplugins/closecontacts/closecontacts.cpp
avogadro/qtplugins/closecontacts/closecontacts.h
avogadro/qtplugins/coloropacitymap/CMakeLists.txt
avogadro/qtplugins/coloropacitymap/coloropacitymap.cpp
avogadro/qtplugins/coloropacitymap/coloropacitymap.h
avogadro/qtplugins/coloropacitymap/comdialog.cpp
avogadro/qtplugins/coloropacitymap/comdialog.h
avogadro/qtplugins/coloropacitymap/comdialog.ui
avogadro/qtplugins/coloropacitymap/computehistogram.h
avogadro/qtplugins/coloropacitymap/histogramwidget.cpp
avogadro/qtplugins/coloropacitymap/histogramwidget.h
avogadro/qtplugins/coloropacitymap/vtkChartHistogram.cpp
avogadro/qtplugins/coloropacitymap/vtkChartHistogram.h
avogadro/qtplugins/coloropacitymap/vtkChartHistogramColorOpacityEditor.cpp
avogadro/qtplugins/coloropacitymap/vtkChartHistogramColorOpacityEditor.h
avogadro/qtplugins/coloropacitymap/vtkCustomPiecewiseControlPointsItem.cpp
avogadro/qtplugins/coloropacitymap/vtkCustomPiecewiseControlPointsItem.h
avogadro/qtplugins/commandscripts/CMakeLists.txt
avogadro/qtplugins/commandscripts/command.cpp
avogadro/qtplugins/commandscripts/command.h
avogadro/qtplugins/configurepython/CMakeLists.txt
avogadro/qtplugins/configurepython/condadialog.cpp
avogadro/qtplugins/configurepython/condadialog.h
avogadro/qtplugins/configurepython/condadialog.ui
avogadro/qtplugins/configurepython/configurepython.cpp
avogadro/qtplugins/configurepython/configurepython.h
avogadro/qtplugins/configurepython/configurepythondialog.cpp
avogadro/qtplugins/configurepython/configurepythondialog.h
avogadro/qtplugins/configurepython/configurepythondialog.ui
avogadro/qtplugins/configurepython/pyproject.toml
avogadro/qtplugins/configurepython/python.qrc
avogadro/qtplugins/constraints/CMakeLists.txt
avogadro/qtplugins/constraints/constraintsdialog.cpp
avogadro/qtplugins/constraints/constraintsdialog.h
avogadro/qtplugins/constraints/constraintsdialog.ui
avogadro/qtplugins/constraints/constraintsextension.cpp
avogadro/qtplugins/constraints/constraintsextension.h
avogadro/qtplugins/constraints/constraintsmodel.cpp
avogadro/qtplugins/constraints/constraintsmodel.h
avogadro/qtplugins/coordinateeditor/CMakeLists.txt
avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp
avogadro/qtplugins/coordinateeditor/coordinateeditor.h
avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp
avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h
avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui
avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp
avogadro/qtplugins/coordinateeditor/coordinatetextedit.h
avogadro/qtplugins/copypaste/CMakeLists.txt
avogadro/qtplugins/copypaste/copypaste.cpp
avogadro/qtplugins/copypaste/copypaste.h
avogadro/qtplugins/cp2kinput/CMakeLists.txt
avogadro/qtplugins/cp2kinput/cp2kinput.cpp
avogadro/qtplugins/cp2kinput/cp2kinput.h
avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp
avogadro/qtplugins/cp2kinput/cp2kinputdialog.h
avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui
avogadro/qtplugins/crystal/CMakeLists.txt
avogadro/qtplugins/crystal/crystal.cpp
avogadro/qtplugins/crystal/crystal.h
avogadro/qtplugins/crystal/crystalscene.cpp
avogadro/qtplugins/crystal/crystalscene.h
avogadro/qtplugins/crystal/importcrystaldialog.cpp
avogadro/qtplugins/crystal/importcrystaldialog.h
avogadro/qtplugins/crystal/importcrystaldialog.ui
avogadro/qtplugins/crystal/supercelldialog.cpp
avogadro/qtplugins/crystal/supercelldialog.h
avogadro/qtplugins/crystal/supercelldialog.ui
avogadro/qtplugins/crystal/unitcelldialog.cpp
avogadro/qtplugins/crystal/unitcelldialog.h
avogadro/qtplugins/crystal/unitcelldialog.ui
avogadro/qtplugins/crystal/volumescalingdialog.cpp
avogadro/qtplugins/crystal/volumescalingdialog.h
avogadro/qtplugins/crystal/volumescalingdialog.ui
avogadro/qtplugins/customelements/CMakeLists.txt
avogadro/qtplugins/customelements/customelements.cpp
avogadro/qtplugins/customelements/customelements.h
avogadro/qtplugins/dipole/CMakeLists.txt
avogadro/qtplugins/dipole/dipole.cpp
avogadro/qtplugins/dipole/dipole.h
avogadro/qtplugins/editor/CMakeLists.txt
avogadro/qtplugins/editor/editor.cpp
avogadro/qtplugins/editor/editor.h
avogadro/qtplugins/editor/editor.qrc
avogadro/qtplugins/editor/editor_dark.svg
avogadro/qtplugins/editor/editor_light.svg
avogadro/qtplugins/editor/editortoolwidget.cpp
avogadro/qtplugins/editor/editortoolwidget.h
avogadro/qtplugins/editor/editortoolwidget.ui
avogadro/qtplugins/fetchpdb/CMakeLists.txt
avogadro/qtplugins/fetchpdb/fetchpdb.cpp
avogadro/qtplugins/fetchpdb/fetchpdb.h
avogadro/qtplugins/focus/CMakeLists.txt
avogadro/qtplugins/focus/focus.cpp
avogadro/qtplugins/focus/focus.h
avogadro/qtplugins/force/CMakeLists.txt
avogadro/qtplugins/force/force.cpp
avogadro/qtplugins/force/force.h
avogadro/qtplugins/forcefield/CMakeLists.txt
avogadro/qtplugins/forcefield/forcefield.cpp
avogadro/qtplugins/forcefield/forcefield.h
avogadro/qtplugins/forcefield/forcefielddialog.cpp
avogadro/qtplugins/forcefield/forcefielddialog.h
avogadro/qtplugins/forcefield/forcefielddialog.ui
avogadro/qtplugins/forcefield/obenergy.cpp
avogadro/qtplugins/forcefield/obenergy.h
avogadro/qtplugins/forcefield/obmmenergy.cpp
avogadro/qtplugins/forcefield/obmmenergy.h
avogadro/qtplugins/forcefield/scriptenergy.cpp
avogadro/qtplugins/forcefield/scriptenergy.h
avogadro/qtplugins/gamessinput/CMakeLists.txt
avogadro/qtplugins/gamessinput/gamesshighlighter.cpp
avogadro/qtplugins/gamessinput/gamesshighlighter.h
avogadro/qtplugins/gamessinput/gamessinput.cpp
avogadro/qtplugins/gamessinput/gamessinput.h
avogadro/qtplugins/gamessinput/gamessinputdialog.cpp
avogadro/qtplugins/gamessinput/gamessinputdialog.h
avogadro/qtplugins/gamessinput/gamessinputdialog.ui
avogadro/qtplugins/hydrogens/CMakeLists.txt
avogadro/qtplugins/hydrogens/hydrogens.cpp
avogadro/qtplugins/hydrogens/hydrogens.h
avogadro/qtplugins/importpqr/CMakeLists.txt
avogadro/qtplugins/importpqr/importpqr.cpp
avogadro/qtplugins/importpqr/importpqr.h
avogadro/qtplugins/importpqr/pqrrequest.cpp
avogadro/qtplugins/importpqr/pqrrequest.h
avogadro/qtplugins/importpqr/pqrwidget.cpp
avogadro/qtplugins/importpqr/pqrwidget.h
avogadro/qtplugins/importpqr/pqrwidget.ui
avogadro/qtplugins/insertdna/CMakeLists.txt
avogadro/qtplugins/insertdna/insertdna.cpp
avogadro/qtplugins/insertdna/insertdna.h
avogadro/qtplugins/insertdna/insertdnadialog.ui
avogadro/qtplugins/insertfragment/CMakeLists.txt
avogadro/qtplugins/insertfragment/insertfragment.cpp
avogadro/qtplugins/insertfragment/insertfragment.h
avogadro/qtplugins/insertpeptide/CMakeLists.txt
avogadro/qtplugins/insertpeptide/insertpeptide.cpp
avogadro/qtplugins/insertpeptide/insertpeptide.h
avogadro/qtplugins/insertpeptide/insertpeptidedialog.ui
avogadro/qtplugins/label/CMakeLists.txt
avogadro/qtplugins/label/label.cpp
avogadro/qtplugins/label/label.h
avogadro/qtplugins/label/label.qrc
avogadro/qtplugins/label/label_dark.svg
avogadro/qtplugins/label/label_light.svg
avogadro/qtplugins/label/labeleditor.cpp
avogadro/qtplugins/label/labeleditor.h
avogadro/qtplugins/lammpsinput/CMakeLists.txt
avogadro/qtplugins/lammpsinput/lammpsinput.cpp
avogadro/qtplugins/lammpsinput/lammpsinput.h
avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp
avogadro/qtplugins/lammpsinput/lammpsinputdialog.h
avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui
avogadro/qtplugins/licorice/CMakeLists.txt
avogadro/qtplugins/licorice/licorice.cpp
avogadro/qtplugins/licorice/licorice.h
avogadro/qtplugins/lineformatinput/CMakeLists.txt
avogadro/qtplugins/lineformatinput/lineformatinput.cpp
avogadro/qtplugins/lineformatinput/lineformatinput.h
avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp
avogadro/qtplugins/lineformatinput/lineformatinputdialog.h
avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui
avogadro/qtplugins/manipulator/CMakeLists.txt
avogadro/qtplugins/manipulator/manipulatewidget.ui
avogadro/qtplugins/manipulator/manipulator.cpp
avogadro/qtplugins/manipulator/manipulator.h
avogadro/qtplugins/manipulator/manipulator.qrc
avogadro/qtplugins/manipulator/manipulator_dark.svg
avogadro/qtplugins/manipulator/manipulator_light.svg
avogadro/qtplugins/measuretool/CMakeLists.txt
avogadro/qtplugins/measuretool/measure_dark.svg
avogadro/qtplugins/measuretool/measure_light.svg
avogadro/qtplugins/measuretool/measuretool.cpp
avogadro/qtplugins/measuretool/measuretool.h
avogadro/qtplugins/measuretool/measuretool.qrc
avogadro/qtplugins/molecularproperties/CMakeLists.txt
avogadro/qtplugins/molecularproperties/molecularmodel.cpp
avogadro/qtplugins/molecularproperties/molecularmodel.h
avogadro/qtplugins/molecularproperties/molecularproperties.cpp
avogadro/qtplugins/molecularproperties/molecularproperties.h
avogadro/qtplugins/molecularproperties/molecularview.cpp
avogadro/qtplugins/molecularproperties/molecularview.h
avogadro/qtplugins/navigator/CMakeLists.txt
avogadro/qtplugins/navigator/navigator.cpp
avogadro/qtplugins/navigator/navigator.h
avogadro/qtplugins/navigator/navigator.qrc
avogadro/qtplugins/navigator/navigator_dark.svg
avogadro/qtplugins/navigator/navigator_light.svg
avogadro/qtplugins/networkdatabases/CMakeLists.txt
avogadro/qtplugins/networkdatabases/networkdatabases.cpp
avogadro/qtplugins/networkdatabases/networkdatabases.h
avogadro/qtplugins/noncovalent/CMakeLists.txt
avogadro/qtplugins/noncovalent/noncovalent.cpp
avogadro/qtplugins/noncovalent/noncovalent.h
avogadro/qtplugins/openbabel/CMakeLists.txt
avogadro/qtplugins/openbabel/conformersearchdialog.cpp
avogadro/qtplugins/openbabel/conformersearchdialog.h
avogadro/qtplugins/openbabel/conformersearchdialog.ui
avogadro/qtplugins/openbabel/obcharges.cpp
avogadro/qtplugins/openbabel/obcharges.h
avogadro/qtplugins/openbabel/obfileformat.cpp
avogadro/qtplugins/openbabel/obfileformat.h
avogadro/qtplugins/openbabel/obforcefielddialog.cpp
avogadro/qtplugins/openbabel/obforcefielddialog.h
avogadro/qtplugins/openbabel/obforcefielddialog.ui
avogadro/qtplugins/openbabel/obprocess.cpp
avogadro/qtplugins/openbabel/obprocess.h
avogadro/qtplugins/openbabel/openbabel.cpp
avogadro/qtplugins/openbabel/openbabel.h
avogadro/qtplugins/openmminput/CMakeLists.txt
avogadro/qtplugins/openmminput/openmminput.cpp
avogadro/qtplugins/openmminput/openmminput.h
avogadro/qtplugins/openmminput/openmminputdialog.cpp
avogadro/qtplugins/openmminput/openmminputdialog.h
avogadro/qtplugins/openmminput/openmminputdialog.ui
avogadro/qtplugins/overlayaxes/CMakeLists.txt
avogadro/qtplugins/overlayaxes/overlayaxes.cpp
avogadro/qtplugins/overlayaxes/overlayaxes.h
avogadro/qtplugins/playertool/CMakeLists.txt
avogadro/qtplugins/playertool/player_dark.svg
avogadro/qtplugins/playertool/player_light.svg
avogadro/qtplugins/playertool/playertool.cpp
avogadro/qtplugins/playertool/playertool.h
avogadro/qtplugins/playertool/playertool.qrc
avogadro/qtplugins/plotconformer/CMakeLists.txt
avogadro/qtplugins/plotconformer/plotconformer.cpp
avogadro/qtplugins/plotconformer/plotconformer.h
avogadro/qtplugins/plotpdf/CMakeLists.txt
avogadro/qtplugins/plotpdf/pdfoptionsdialog.cpp
avogadro/qtplugins/plotpdf/pdfoptionsdialog.h
avogadro/qtplugins/plotpdf/pdfoptionsdialog.ui
avogadro/qtplugins/plotpdf/plotpdf.cpp
avogadro/qtplugins/plotpdf/plotpdf.h
avogadro/qtplugins/plotxrd/CMakeLists.txt
avogadro/qtplugins/plotxrd/plotxrd.cpp
avogadro/qtplugins/plotxrd/plotxrd.h
avogadro/qtplugins/plotxrd/xrdoptionsdialog.cpp
avogadro/qtplugins/plotxrd/xrdoptionsdialog.h
avogadro/qtplugins/plotxrd/xrdoptionsdialog.ui
avogadro/qtplugins/plugindownloader/CMakeLists.txt
avogadro/qtplugins/plugindownloader/downloaderwidget.cpp
avogadro/qtplugins/plugindownloader/downloaderwidget.h
avogadro/qtplugins/plugindownloader/downloaderwidget.ui
avogadro/qtplugins/plugindownloader/plugindownloader.cpp
avogadro/qtplugins/plugindownloader/plugindownloader.h
avogadro/qtplugins/plugindownloader/zipextracter.cpp
avogadro/qtplugins/plugindownloader/zipextracter.h
avogadro/qtplugins/ply/CMakeLists.txt
avogadro/qtplugins/ply/ply.cpp
avogadro/qtplugins/ply/ply.h
avogadro/qtplugins/povray/CMakeLists.txt
avogadro/qtplugins/povray/povray.cpp
avogadro/qtplugins/povray/povray.h
avogadro/qtplugins/propertytables/CMakeLists.txt
avogadro/qtplugins/propertytables/propertymodel.cpp
avogadro/qtplugins/propertytables/propertymodel.h
avogadro/qtplugins/propertytables/propertytables.cpp
avogadro/qtplugins/propertytables/propertytables.h
avogadro/qtplugins/propertytables/propertyview.cpp
avogadro/qtplugins/propertytables/propertyview.h
avogadro/qtplugins/qtaim/CMakeLists.txt
avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp
avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h
avogadro/qtplugins/qtaim/qtaimcubature.cpp
avogadro/qtplugins/qtaim/qtaimcubature.h
avogadro/qtplugins/qtaim/qtaimengine.cpp
avogadro/qtplugins/qtaim/qtaimengine.h
avogadro/qtplugins/qtaim/qtaimextension.cpp
avogadro/qtplugins/qtaim/qtaimextension.h
avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp
avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h
avogadro/qtplugins/qtaim/qtaimmathutilities.cpp
avogadro/qtplugins/qtaim/qtaimmathutilities.h
avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp
avogadro/qtplugins/qtaim/qtaimodeintegrator.h
avogadro/qtplugins/qtaim/qtaimsettingswidget.ui
avogadro/qtplugins/qtaim/qtaimwavefunction.cpp
avogadro/qtplugins/qtaim/qtaimwavefunction.h
avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp
avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h
avogadro/qtplugins/qtaim/test/c4h4.wfn
avogadro/qtplugins/qtaim/test/hco2.wfn
avogadro/qtplugins/quantuminput/CMakeLists.txt
avogadro/qtplugins/quantuminput/quantuminput.cpp
avogadro/qtplugins/quantuminput/quantuminput.h
avogadro/qtplugins/resetview/CMakeLists.txt
avogadro/qtplugins/resetview/resetview.cpp
avogadro/qtplugins/resetview/resetview.h
avogadro/qtplugins/scriptcharges/CMakeLists.txt
avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp
avogadro/qtplugins/scriptcharges/scriptchargemodel.h
avogadro/qtplugins/scriptcharges/scriptcharges.cpp
avogadro/qtplugins/scriptcharges/scriptcharges.h
avogadro/qtplugins/scriptfileformats/CMakeLists.txt
avogadro/qtplugins/scriptfileformats/fileformatscript.cpp
avogadro/qtplugins/scriptfileformats/fileformatscript.h
avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp
avogadro/qtplugins/scriptfileformats/scriptfileformats.h
avogadro/qtplugins/scriptfileformats/formatScripts/zyx.py
avogadro/qtplugins/select/CMakeLists.txt
avogadro/qtplugins/select/select.cpp
avogadro/qtplugins/select/select.h
avogadro/qtplugins/selectiontool/CMakeLists.txt
avogadro/qtplugins/selectiontool/selection_dark.svg
avogadro/qtplugins/selectiontool/selection_light.svg
avogadro/qtplugins/selectiontool/selectiontool.cpp
avogadro/qtplugins/selectiontool/selectiontool.h
avogadro/qtplugins/selectiontool/selectiontool.qrc
avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp
avogadro/qtplugins/selectiontool/selectiontoolwidget.h
avogadro/qtplugins/selectiontool/selectiontoolwidget.ui
avogadro/qtplugins/spacegroup/CMakeLists.txt
avogadro/qtplugins/spacegroup/spacegroup.cpp
avogadro/qtplugins/spacegroup/spacegroup.h
avogadro/qtplugins/spectra/CMakeLists.txt
avogadro/qtplugins/spectra/spectra.cpp
avogadro/qtplugins/spectra/spectra.h
avogadro/qtplugins/spectra/spectradialog.cpp
avogadro/qtplugins/spectra/spectradialog.h
avogadro/qtplugins/spectra/spectradialog.ui
avogadro/qtplugins/surfacerender/CMakeLists.txt
avogadro/qtplugins/surfacerender/surfacerender.cpp
avogadro/qtplugins/surfacerender/surfacerender.h
avogadro/qtplugins/surfaces/CMakeLists.txt
avogadro/qtplugins/surfaces/orbitals.cpp
avogadro/qtplugins/surfaces/orbitals.h
avogadro/qtplugins/surfaces/orbitaltablemodel.cpp
avogadro/qtplugins/surfaces/orbitaltablemodel.h
avogadro/qtplugins/surfaces/orbitalwidget.cpp
avogadro/qtplugins/surfaces/orbitalwidget.h
avogadro/qtplugins/surfaces/orbitalwidget.ui
avogadro/qtplugins/surfaces/surfacedialog.cpp
avogadro/qtplugins/surfaces/surfacedialog.h
avogadro/qtplugins/surfaces/surfacedialog.ui
avogadro/qtplugins/surfaces/surfaces.cpp
avogadro/qtplugins/surfaces/surfaces.h
avogadro/qtplugins/svg/CMakeLists.txt
avogadro/qtplugins/svg/svg.cpp
avogadro/qtplugins/svg/svg.h
avogadro/qtplugins/symmetry/CMakeLists.txt
avogadro/qtplugins/symmetry/operationstablemodel.cpp
avogadro/qtplugins/symmetry/operationstablemodel.h
avogadro/qtplugins/symmetry/symmetry.cpp
avogadro/qtplugins/symmetry/symmetry.h
avogadro/qtplugins/symmetry/symmetryscene.cpp
avogadro/qtplugins/symmetry/symmetryscene.h
avogadro/qtplugins/symmetry/symmetryutil.cpp
avogadro/qtplugins/symmetry/symmetryutil.h
avogadro/qtplugins/symmetry/symmetrywidget.cpp
avogadro/qtplugins/symmetry/symmetrywidget.h
avogadro/qtplugins/symmetry/symmetrywidget.ui
avogadro/qtplugins/templatetool/CMakeLists.txt
avogadro/qtplugins/templatetool/template.qrc
avogadro/qtplugins/templatetool/template_dark.svg
avogadro/qtplugins/templatetool/template_light.svg
avogadro/qtplugins/templatetool/templatetool.cpp
avogadro/qtplugins/templatetool/templatetool.h
avogadro/qtplugins/templatetool/templatetoolkeymap.h
avogadro/qtplugins/templatetool/templatetoolwidget.cpp
avogadro/qtplugins/templatetool/templatetoolwidget.h
avogadro/qtplugins/templatetool/templatetoolwidget.ui
avogadro/qtplugins/templatetool/centers/1-lin.cjson
avogadro/qtplugins/templatetool/centers/1-lin.svg
avogadro/qtplugins/templatetool/centers/2-lin.cjson
avogadro/qtplugins/templatetool/centers/2-lin.svg
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avogadro/qtplugins/templatetool/centers/3-tpl.svg
avogadro/qtplugins/templatetool/centers/4-sqp.cjson
avogadro/qtplugins/templatetool/centers/4-sqp.svg
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avogadro/qtplugins/templatetool/centers/4-tet.svg
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avogadro/qtplugins/templatetool/centers/5-spy.svg
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avogadro/qtplugins/templatetool/centers/6-oct.svg
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avogadro/qtplugins/templatetool/centers/6-tpr.svg
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avogadro/qtplugins/templatetool/centers/8-sqa.svg
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avogadro/qtplugins/templatetool/ligands/1-ammine.svg
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avogadro/qtplugins/templatetool/ligands/1-aqua.svg
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thirdparty/nlohmann/ordered_map.hpp
thirdparty/nlohmann/detail/abi_macros.hpp
thirdparty/nlohmann/detail/exceptions.hpp
thirdparty/nlohmann/detail/hash.hpp
thirdparty/nlohmann/detail/json_custom_base_class.hpp
thirdparty/nlohmann/detail/json_pointer.hpp
thirdparty/nlohmann/detail/json_ref.hpp
thirdparty/nlohmann/detail/macro_scope.hpp
thirdparty/nlohmann/detail/macro_unscope.hpp
thirdparty/nlohmann/detail/string_concat.hpp
thirdparty/nlohmann/detail/string_escape.hpp
thirdparty/nlohmann/detail/value_t.hpp
thirdparty/nlohmann/detail/conversions/from_json.hpp
thirdparty/nlohmann/detail/conversions/to_chars.hpp
thirdparty/nlohmann/detail/conversions/to_json.hpp
thirdparty/nlohmann/detail/input/binary_reader.hpp
thirdparty/nlohmann/detail/input/input_adapters.hpp
thirdparty/nlohmann/detail/input/json_sax.hpp
thirdparty/nlohmann/detail/input/lexer.hpp
thirdparty/nlohmann/detail/input/parser.hpp
thirdparty/nlohmann/detail/input/position_t.hpp
thirdparty/nlohmann/detail/iterators/internal_iterator.hpp
thirdparty/nlohmann/detail/iterators/iter_impl.hpp
thirdparty/nlohmann/detail/iterators/iteration_proxy.hpp
thirdparty/nlohmann/detail/iterators/iterator_traits.hpp
thirdparty/nlohmann/detail/iterators/json_reverse_iterator.hpp
thirdparty/nlohmann/detail/iterators/primitive_iterator.hpp
thirdparty/nlohmann/detail/meta/cpp_future.hpp
thirdparty/nlohmann/detail/meta/detected.hpp
thirdparty/nlohmann/detail/meta/identity_tag.hpp
thirdparty/nlohmann/detail/meta/is_sax.hpp
thirdparty/nlohmann/detail/meta/std_fs.hpp
thirdparty/nlohmann/detail/meta/type_traits.hpp
thirdparty/nlohmann/detail/meta/void_t.hpp
thirdparty/nlohmann/detail/meta/call_std/begin.hpp
thirdparty/nlohmann/detail/meta/call_std/end.hpp
thirdparty/nlohmann/detail/output/binary_writer.hpp
thirdparty/nlohmann/detail/output/output_adapters.hpp
thirdparty/nlohmann/detail/output/serializer.hpp
thirdparty/nlohmann/thirdparty/hedley/hedley.hpp
thirdparty/nlohmann/thirdparty/hedley/hedley_undef.hpp
thirdparty/pugixml/pugiconfig.hpp
thirdparty/pugixml/pugixml.cpp
thirdparty/pugixml/pugixml.hpp
thirdparty/struct/CMakeLists.txt
thirdparty/struct/LICENSE
thirdparty/struct/README.md
thirdparty/struct/struct.c
thirdparty/struct/struct.h
thirdparty/struct/struct_endian.c
thirdparty/struct/struct_endian.h
thirdparty/tinycolormap/CMakeLists.txt
thirdparty/tinycolormap/LICENSE
thirdparty/tinycolormap/README.md
thirdparty/tinycolormap/include/tinycolormap.hpp
utilities/CMakeLists.txt
utilities/bodr/CMakeLists.txt
utilities/bodr/bodrparse.cxx
utilities/encodefile/CMakeLists.txt
utilities/encodefile/encodefile.cxx
utilities/resdata/CMakeLists.txt
utilities/resdata/resdataparse.cxx
utilities/vtktesting/imageregressiontest.h