.gitignore
.zenodo.json
CITATION.cff
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
.github/copilot-instructions.md
.github/dependabot.yml
.github/workflows/codespell.yml
.github/workflows/publish.yml
.github/workflows/run_tests.yml
autoflatten/__init__.py
autoflatten/_version.py
autoflatten/cli.py
autoflatten/config.py
autoflatten/core.py
autoflatten/freesurfer.py
autoflatten/logging.py
autoflatten/template.py
autoflatten/utils.py
autoflatten/viz.py
autoflatten.egg-info/PKG-INFO
autoflatten.egg-info/SOURCES.txt
autoflatten.egg-info/dependency_links.txt
autoflatten.egg-info/entry_points.txt
autoflatten.egg-info/requires.txt
autoflatten.egg-info/top_level.txt
autoflatten/backends/__init__.py
autoflatten/backends/base.py
autoflatten/backends/freesurfer.py
autoflatten/backends/pyflatten.py
autoflatten/default_templates/fsaverage_cuts_template.json
autoflatten/flatten/__init__.py
autoflatten/flatten/algorithm.py
autoflatten/flatten/config.py
autoflatten/flatten/distance.py
autoflatten/flatten/energy.py
autoflatten/flatten/threading.py
autoflatten/tests/__init__.py
autoflatten/tests/test_backends.py
autoflatten/tests/test_core.py
autoflatten/tests/test_flatten.py
autoflatten/tests/test_freesurfer.py
autoflatten/tests/test_template.py
autoflatten/tests/test_threading.py
autoflatten/tests/test_utils.py
autoflatten/tests/test_version.py
autoflatten/tests/test_viz.py