.gitignore
LICENSE
MANIFEST.in
README.md
autoclustal.nf
autoclustal.py
create_demo_data.py
environment.yml
example.py
grapher.py
nextflow.config
pyproject.toml
requirements.txt
setup.py
visualize.py
autoclustal/__init__.py
autoclustal.egg-info/PKG-INFO
autoclustal.egg-info/SOURCES.txt
autoclustal.egg-info/dependency_links.txt
autoclustal.egg-info/entry_points.txt
autoclustal.egg-info/requires.txt
autoclustal.egg-info/top_level.txt
autoclustal/bin/__init__.py
autoclustal/bin/autoclustal.py
autoclustal/bin/create_demo_data.py
autoclustal/bin/grapher.py
autoclustal/bin/visualize.py
autoclustal/conf/base.config
autoclustal/conf/igenomes.config
autoclustal/conf/modules.config
autoclustal/conf/test.config
autoclustal/conf/test_full.config
autoclustal/modules/__init__.py
autoclustal/modules/alignment.py
autoclustal/modules/analysis.py
autoclustal/modules/blast_search.py
autoclustal/modules/clustering.py
autoclustal/modules/phylogeny.py
autoclustal/modules/sequence_handler.py
autoclustal/modules/simple_analysis.py
conf/base.config
conf/igenomes.config
conf/modules.config
conf/test.config
conf/test_full.config
modules/__init__.py
modules/alignment.py
modules/analysis.py
modules/blast_search.py
modules/clustering.py
modules/phylogeny.py
modules/sequence_handler.py
modules/simple_analysis.py