# CLI Help Backup

Generated: 2025-08-30T20:21:35Z

## root
```text
2025-08-30 16:21:38,155 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:21                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

Commands
 Command     Description                     Example                            
 process     Process EEG data                autocleaneeg-pipeline process      
                                             RestingEyesOpen /path/data.raw     
 list-tasks  List available tasks            autocleaneeg-pipeline list-tasks   
 review      Start review GUI                autocleaneeg-pipeline review       
                                             --output ~/Autoclean-EEG/output    
 view        View EEG file (MNE-QT)          autocleaneeg-pipeline view         
                                             /path/data.set                     
 setup       Setup or reconfigure workspace  autocleaneeg-pipeline setup        
 config      Manage user configuration       autocleaneeg-pipeline config show  
Tip: Use '<command> --help' for detailed options.
```

## process
```text
2025-08-30 16:21:41,974 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:21                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline process [-h] [--task TASK]
                                     [--task-file TASK_FILE] [--file FILE]
                                     [--dir DIRECTORY] [--output OUTPUT]
                                     [--format FORMAT] [--recursive]
                                     [--dry-run] [--verbose] [--parallel N]
                                      

positional arguments:
  task_name             Task name (e.g., RestingEyesOpen)
  input_path            EEG file or directory to process

options:
  -h, --help            Show help
  --task TASK           Task name (alternative to positional)
  --task-file TASK_FILE
                        Python task file to use
  --file FILE           Single EEG file to process (alternative to positional)
  --dir, --directory DIRECTORY
                        Directory containing EEG files to process (alternative
                        to positional)
  --output OUTPUT       Output directory (default: workspace/output)
  --format FORMAT       File format glob pattern for directory processing
                        (default: *.{raw,set}). Examples: '*.raw', '*.edf', '*.set'.
                        Note: '.raw' will be auto-corrected to '*.raw'
  --recursive           Search subdirectories recursively
  --dry-run             Show what would be processed without running
  --verbose, -v         Enable verbose/debug output
  --parallel, -p N      Process files in parallel (default: 3 concurrent
                        files, max: 8)

```

## list-tasks
```text
2025-08-30 16:21:45,821 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:21                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline list-tasks [-h] [--verbose] [--overrides]

options:
  -h, --help     Show help
  --verbose, -v  Show detailed information
  --overrides    Show workspace tasks that override built-in tasks

```

## review
```text
2025-08-30 16:21:49,806 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:21                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline review [-h] [--output OUTPUT]

options:
  -h, --help       Show help
  --output OUTPUT  AutoClean output directory to review (default:
                   workspace/output)

```

## task
```text
2025-08-30 16:21:53,750 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:21                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline task [-h] {add,remove,list} ...

positional arguments:
  {add,remove,list}  Task actions
    add              Add a custom task
    remove           Remove a custom task
    list             List all available tasks

options:
  -h, --help         Show help

```

## task add
```text
2025-08-30 16:21:57,654 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:21                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline task add [-h] [--name NAME] [--force] task_file

positional arguments:
  task_file    Python task file to add

options:
  -h, --help   Show help
  --name NAME  Custom name for the task (default: filename)
  --force      Overwrite existing task with same name

```

## task remove
```text
2025-08-30 16:22:01,750 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline task remove [-h] task_name

positional arguments:
  task_name   Name of the task to remove

options:
  -h, --help  Show help

```

## task list
```text
2025-08-30 16:22:05,948 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline task list [-h] [--verbose] [--overrides]

options:
  -h, --help     Show help
  --verbose, -v  Show detailed information
  --overrides    Show workspace tasks that override built-in tasks

```

## config
```text
2025-08-30 16:22:09,948 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline config [-h] {show,setup,reset,export,import} ...

positional arguments:
  {show,setup,reset,export,import}
                        Config actions
    show                Show configuration directory location
    setup               Reconfigure workspace location
    reset               Reset configuration to defaults
    export              Export configuration
    import              Import configuration

options:
  -h, --help            Show help

```

## config show
```text
2025-08-30 16:22:13,844 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline config show [-h]

options:
  -h, --help  Show help

```

## config setup
```text
2025-08-30 16:22:17,697 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline config setup [-h]

options:
  -h, --help  Show help

```

## config reset
```text
2025-08-30 16:22:21,369 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline config reset [-h] [--confirm]

options:
  -h, --help  Show help
  --confirm   Confirm the reset action

```

## config export
```text
2025-08-30 16:22:25,145 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline config export [-h] export_path

positional arguments:
  export_path  Directory to export configuration to

options:
  -h, --help   Show help

```

## config import
```text
2025-08-30 16:22:28,882 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline config import [-h] import_path

positional arguments:
  import_path  Directory to import configuration from

options:
  -h, --help   Show help

```

## setup
```text
2025-08-30 16:22:32,682 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline setup [-h] [--compliance-mode]

options:
  -h, --help         Show help
  --compliance-mode  Enable FDA 21 CFR Part 11 compliance mode with Auth0
                     authentication

```

## export-access-log
```text
2025-08-30 16:22:36,349 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline export-access-log [-h] [--output OUTPUT]
                                               [--format {json,csv,human}]
                                               [--start-date START_DATE]
                                               [--end-date END_DATE]
                                               [--operation OPERATION]
                                               [--verify-only]
                                               [--database DATABASE]

options:
  -h, --help            Show help
  --output OUTPUT       Output file path (default: access-
                        log-{timestamp}.json)
  --format {json,csv,human}
                        Output format (default: json)
  --start-date START_DATE
                        Start date filter (YYYY-MM-DD format)
  --end-date END_DATE   End date filter (YYYY-MM-DD format)
  --operation OPERATION
                        Filter by operation type
  --verify-only         Only verify integrity, don't export data
  --database DATABASE   Path to database file (default: auto-detect from
                        workspace)

```

## login
```text
2025-08-30 16:22:40,033 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline login [-h]

options:
  -h, --help  Show help

```

## logout
```text
2025-08-30 16:22:43,646 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline logout [-h]

options:
  -h, --help  Show help

```

## whoami
```text
2025-08-30 16:22:47,396 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline whoami [-h]

options:
  -h, --help  Show help

```

## auth0-diagnostics
```text
2025-08-30 16:22:51,178 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline auth0-diagnostics [-h] [--verbose]

options:
  -h, --help     Show help
  --verbose, -v  Show detailed diagnostic information

```

## clean-task
```text
2025-08-30 16:22:55,037 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline clean-task [-h] [--output-dir OUTPUT_DIR]
                                        [--force] [--dry-run]
                                        task

positional arguments:
  task                  Task name to clean

options:
  -h, --help            Show help
  --output-dir OUTPUT_DIR
                        Output directory (defaults to configured workspace)
  --force               Skip confirmation prompt
  --dry-run             Show what would be deleted without actually deleting

```

## view
```text
2025-08-30 16:22:58,885 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:22                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline view [-h] [--no-view] file

positional arguments:
  file        Path to EEG file

options:
  -h, --help  Show help
  --no-view   Validate without viewing

```

## version
```text
2025-08-30 16:23:02,672 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:23                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline version [-h]

options:
  -h, --help  Show help

```

## tutorial
```text
2025-08-30 16:23:06,389 - OpenGL.acceleratesupport - INFO - No OpenGL_accelerate module loaded: No module named 'OpenGL_accelerate'
Using qt as 2D backend.

                       🧠 AutocleanEEG Pipeline (2.2.0)                         
                       Automated EEG Processing Software                        


🐍 Python 3.13.0  •  🖥 Darwin 24.6.0  •  🕒 2025-08-30 16:23                    
✓ Workspace ~/Documents/Autoclean-EEG                                           
💾 Free space 444.0 GB                                                          

usage: autocleaneeg-pipeline tutorial [-h]

options:
  -h, --help  Show help

```

