README.md
setup.py
src/aspire/__init__.py
src/aspire/config.ini
src/aspire.egg-info/PKG-INFO
src/aspire.egg-info/SOURCES.txt
src/aspire.egg-info/dependency_links.txt
src/aspire.egg-info/requires.txt
src/aspire.egg-info/top_level.txt
src/aspire.egg-info/zip-safe
src/aspire/apple/__init__.py
src/aspire/apple/apple.py
src/aspire/apple/helper.py
src/aspire/apple/picking.py
src/aspire/aspire/__init__.py
src/aspire/aspire/abinitio.py
src/aspire/aspire/class_averaging.py
src/aspire/aspire/preprocessor.py
src/aspire/aspire/common/__init__.py
src/aspire/aspire/common/config.py
src/aspire/aspire/common/exceptions.py
src/aspire/aspire/common/logger.py
src/aspire/aspire/em_classavg/__init__.py
src/aspire/aspire/em_classavg/circ_shift_kernel.py
src/aspire/aspire/em_classavg/config.py
src/aspire/aspire/em_classavg/data_utils.py
src/aspire/aspire/em_classavg/em.py
src/aspire/aspire/em_classavg/em_old.py
src/aspire/aspire/em_classavg/mask_images_kernel.py
src/aspire/aspire/em_classavg/s_em.py
src/aspire/aspire/em_classavg/s_em_class_avg.py
src/aspire/aspire/em_classavg/slice_assign_kernel.py
src/aspire/aspire/em_classavg/test_forward_backward.py
src/aspire/aspire/em_classavg/test_progressbar2.py
src/aspire/aspire/em_classavg/image_denoising/__init__.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/SteerablePCA.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/__init__.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/Converter.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/__init__.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/test.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/DirectModel/DirectModel.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/DirectModel/__init__.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/DirectModel/test.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/FastModel/FastModel.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/FastModel/FastModel_forward_utils.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/FastModel/FastModel_init_utils.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/FastModel/__init__.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/ConverterModel/FastModel/test.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/PSWF2D/GeneralFunctions.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/PSWF2D/PSWF2DModel.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/PSWF2D/PSWF2D_utils.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/PSWF2D/__init__.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/PSWF2D/test.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/PSWF2D/BN/BN.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/PSWF2D/BN/BN_init_utils.py
src/aspire/aspire/em_classavg/image_denoising/image_denoising/PSWF2D/BN/__init__.py
src/aspire/aspire/utils/__init__.py
src/aspire/aspire/utils/array_utils.py
src/aspire/aspire/utils/compare_stacks.py
src/aspire/aspire/utils/data_utils.py
src/aspire/aspire/utils/helpers.py
src/aspire/aspire/utils/parse_star.py
src/aspire/aspire/utils/viewstack.py
src/aspire/aspire/utils/workflow_validation.py
src/aspire/basis/__init__.py
src/aspire/basis/basis_func.py
src/aspire/basis/dirac.py
src/aspire/basis/fb_2d.py
src/aspire/basis/fb_3d.py
src/aspire/basis/ffb_2d.py
src/aspire/basis/ffb_3d.py
src/aspire/basis/fpswf_2d.py
src/aspire/basis/fpswf_3d.py
src/aspire/basis/pswf_2d.py
src/aspire/basis/pswf_3d.py
src/aspire/class2d/__init__.py
src/aspire/class2d/em_class.py
src/aspire/class2d/mra_class.py
src/aspire/class2d/rfa_class.py
src/aspire/class2d/rir_class.py
src/aspire/class3d/__init__.py
src/aspire/class3d/cov3d.py
src/aspire/denoise/__init__.py
src/aspire/denoise/class_avg.py
src/aspire/denoise/covar2d.py
src/aspire/denoise/covar2d_ctf.py
src/aspire/estimation/__init__.py
src/aspire/estimation/covar.py
src/aspire/estimation/kernel.py
src/aspire/estimation/mean.py
src/aspire/estimation/noise.py
src/aspire/image/__init__.py
src/aspire/io/__init__.py
src/aspire/io/micrograph.py
src/aspire/io/star.py
src/aspire/nfft/__init__.py
src/aspire/nfft/finufft.py
src/aspire/nfft/pynfft.py
src/aspire/nfft/utils.py
src/aspire/orientation/__init__.py
src/aspire/orientation/commonline_ev.py
src/aspire/orientation/commonline_gcar.py
src/aspire/orientation/commonline_lud.py
src/aspire/orientation/commonline_sdp.py
src/aspire/orientation/commonline_sync.py
src/aspire/picker/__init__.py
src/aspire/picker/apply_picker.py
src/aspire/reconstruct/__init__.py
src/aspire/reconstruct/ang_recon.py
src/aspire/reconstruct/em_recon.py
src/aspire/reconstruct/kam_recon.py
src/aspire/source/__init__.py
src/aspire/source/mrcstack.py
src/aspire/source/relion.py
src/aspire/source/simulation.py
src/aspire/source/starfile.py
src/aspire/utils/__init__.py
src/aspire/utils/config.py
src/aspire/utils/coor_trans.py
src/aspire/utils/em.py
src/aspire/utils/fft.py
src/aspire/utils/filters.py
src/aspire/utils/matlab_compat.py
src/aspire/utils/matrix.py
src/aspire/utils/misc.py
src/aspire/utils/optimize.py
src/aspire/utils/preprocess.py
src/aspire/utils/numeric/__init__.py
src/aspire/utils/numeric/cupy.py
src/aspire/utils/numeric/numpy.py
src/aspire/volume/__init__.py