LICENSE
README.md
pyproject.toml
src/asodesigner/LocusInfo.py
src/asodesigner/__init__.py
src/asodesigner/aso_generator.py
src/asodesigner/consts.py
src/asodesigner/consts_dataframe.py
src/asodesigner/data_handling.py
src/asodesigner/download_and_create_human_genome.py
src/asodesigner/download_assets.py
src/asodesigner/feature_creation.py
src/asodesigner/genome.py
src/asodesigner/genome_file_utils.py
src/asodesigner/process_utils.py
src/asodesigner/random_util.py
src/asodesigner/read_human_genome.py
src/asodesigner/run_pipe.py
src/asodesigner/timer.py
src/asodesigner/util.py
src/asodesigner/utils.py
src/asodesigner.egg-info/PKG-INFO
src/asodesigner.egg-info/SOURCES.txt
src/asodesigner.egg-info/dependency_links.txt
src/asodesigner.egg-info/requires.txt
src/asodesigner.egg-info/top_level.txt
src/asodesigner/algorithms/__init__.py
src/asodesigner/algorithms/suffix_array.py
src/asodesigner/features/RNaseH_features.py
src/asodesigner/features/__init__.py
src/asodesigner/features/cai.py
src/asodesigner/features/feature_names.py
src/asodesigner/features/hybridization.py
src/asodesigner/features/mod_features.py
src/asodesigner/features/seq_features.py
src/asodesigner/features/smart_hybridization.py
src/asodesigner/features/vienna_fold.py
src/asodesigner/features/rna_access/__init__.py
src/asodesigner/features/rna_access/access_calculator.py
src/asodesigner/features/rna_access/file_util.py
src/asodesigner/features/rna_access/rna_access.py
src/asodesigner/features/rna_access/sense_accessibility.py
src/asodesigner/hybridization/__init__.py
src/asodesigner/hybridization/exp_weights.py
src/asodesigner/hybridization/hybridization_features.py
src/asodesigner/hybridization/md_weights.py
src/asodesigner/off_target/aso_counts.py
src/asodesigner/off_target/cat.py
src/asodesigner/off_target/counter.py
src/asodesigner/off_target/find_matches_in_bam.py
src/asodesigner/populate/__init__.py
src/asodesigner/populate/populate_cai.py
src/asodesigner/populate/populate_sense_accessibility.py
src/asodesigner/yehuda_code/Folding_Functions.py
src/asodesigner/yehuda_code/__init__.py
src/asodesigner/yehuda_code/access_calculator.py
src/asodesigner/yehuda_code/file_util.py
src/asodesigner/yehuda_code/mfe_target_accessability.py
src/asodesigner/yehuda_code/off_target_folding_functions.py
src/asodesigner/yehuda_code/rna_access.py
src/asodesigner/yehuda_code/rna_trigger_selector.py