CHANGES.rst
LICENSE
MANIFEST.in
README.rst
pyproject.toml
setup.cfg
setup.py
versioneer.py
aslprep/__about__.py
aslprep/__init__.py
aslprep/__main__.py
aslprep/_version.py
aslprep/_warnings.py
aslprep/config.py
aslprep.egg-info/PKG-INFO
aslprep.egg-info/SOURCES.txt
aslprep.egg-info/dependency_links.txt
aslprep.egg-info/entry_points.txt
aslprep.egg-info/requires.txt
aslprep.egg-info/top_level.txt
aslprep/cli/__init__.py
aslprep/cli/parser.py
aslprep/cli/run.py
aslprep/cli/version.py
aslprep/cli/workflow.py
aslprep/cli/tests/__init__.py
aslprep/cli/tests/test_parser.py
aslprep/cli/tests/test_version.py
aslprep/data/affine.json
aslprep/data/bids.json
aslprep/data/boilerplate.bib
aslprep/data/fmap-any_registration.json
aslprep/data/fmap-any_registration_testing.json
aslprep/data/fmap_atlas.nii.gz
aslprep/data/fmap_atlas_2_MNI152NLin2009cAsym_affine.mat
aslprep/data/itkIdentityTransform.txt
aslprep/data/reports-spec.yml
aslprep/data/susceptibility_syn.json
aslprep/data/translation_rigid.json
aslprep/data/atlas/HarvardOxford/HarvardOxford.bib
aslprep/data/atlas/HarvardOxford/HarvardOxfordMNI.nii.gz
aslprep/data/atlas/HarvardOxford/HarvardOxfordNodeIndex.1D
aslprep/data/atlas/HarvardOxford/HarvardOxfordNodeNames.txt
aslprep/data/atlas/schaefer200x17/schaefer200x17CommunityAffiliation.1D
aslprep/data/atlas/schaefer200x17/schaefer200x17CommunityNames.txt
aslprep/data/atlas/schaefer200x17/schaefer200x17MNI.nii.gz
aslprep/data/atlas/schaefer200x17/schaefer200x17NodeIndex.1D
aslprep/data/atlas/schaefer200x17/schaefer200x17NodeNames.txt
aslprep/data/atlas/schaefer200x17/schaefer200x17Reference.bib
aslprep/data/atlas/schaefer200x7/schaefer200x7CommunityAffiliation.1D
aslprep/data/atlas/schaefer200x7/schaefer200x7CommunityNames.txt
aslprep/data/atlas/schaefer200x7/schaefer200x7MNI.nii.gz
aslprep/data/atlas/schaefer200x7/schaefer200x7NodeIndex.1D
aslprep/data/atlas/schaefer200x7/schaefer200x7NodeNames.txt
aslprep/data/atlas/schaefer200x7/schaefer200x7Reference.bib
aslprep/data/atlas/schaefer400x17/schaefer400x17CommunityAffiliation.1D
aslprep/data/atlas/schaefer400x17/schaefer400x17CommunityNames.txt
aslprep/data/atlas/schaefer400x17/schaefer400x17MNI.nii.gz
aslprep/data/atlas/schaefer400x17/schaefer400x17NodeIndex.1D
aslprep/data/atlas/schaefer400x17/schaefer400x17NodeNames.txt
aslprep/data/atlas/schaefer400x17/schaefer400x17Reference.bib
aslprep/data/atlas/schaefer400x7/schaefer400x7CommunityAffiliation.1D
aslprep/data/atlas/schaefer400x7/schaefer400x7CommunityNames.txt
aslprep/data/atlas/schaefer400x7/schaefer400x7MNI.nii.gz
aslprep/data/atlas/schaefer400x7/schaefer400x7NodeIndex.1D
aslprep/data/atlas/schaefer400x7/schaefer400x7NodeNames.txt
aslprep/data/atlas/schaefer400x7/schaefer400x7Reference.bib
aslprep/data/flirtsch/bbr.sch
aslprep/data/tests/config.toml
aslprep/data/tests/ds000240/sub-01/anat/sub-01_T1w.json
aslprep/data/tests/ds000240/sub-01/anat/sub-01_T1w.nii.gz
aslprep/data/tests/ds000240/sub-01/perf/sub-01_asl.json
aslprep/data/tests/ds000240/sub-01/perf/sub-01_asl.nii.gz
aslprep/data/tests/ds000240/sub-01/perf/sub-01_aslcontext.tsv
aslprep/interfaces/__init__.py
aslprep/interfaces/cbf_computation.py
aslprep/interfaces/confounds.py
aslprep/interfaces/multiecho.py
aslprep/interfaces/reports.py
aslprep/niworkflows/__about__.py
aslprep/niworkflows/__init__.py
aslprep/niworkflows/_version.py
aslprep/niworkflows/conftest.py
aslprep/niworkflows/anat/__init__.py
aslprep/niworkflows/anat/ants.py
aslprep/niworkflows/anat/freesurfer.py
aslprep/niworkflows/anat/skullstrip.py
aslprep/niworkflows/data/__init__.py
aslprep/niworkflows/data/antsBrainExtractionNoLaplacian_precise.json
aslprep/niworkflows/data/antsBrainExtractionNoLaplacian_testing.json
aslprep/niworkflows/data/antsBrainExtraction_precise.json
aslprep/niworkflows/data/antsBrainExtraction_testing.json
aslprep/niworkflows/data/boldref-mni_registration_precise_000.json
aslprep/niworkflows/data/boldref-mni_registration_precise_001.json
aslprep/niworkflows/data/boldref-mni_registration_precise_002.json
aslprep/niworkflows/data/boldref-mni_registration_testing_000.json
aslprep/niworkflows/data/boldref-mni_registration_testing_001.json
aslprep/niworkflows/data/boldref-mni_registration_testing_002.json
aslprep/niworkflows/data/epi_atlasbased_brainmask.json
aslprep/niworkflows/data/itkIdentityTransform.txt
aslprep/niworkflows/data/nipreps.json
aslprep/niworkflows/data/t1w-mni_registration_fast_000.json
aslprep/niworkflows/data/t1w-mni_registration_precise_000.json
aslprep/niworkflows/data/t1w-mni_registration_precise_001.json
aslprep/niworkflows/data/t1w-mni_registration_precise_002.json
aslprep/niworkflows/data/t1w-mni_registration_testing_000.json
aslprep/niworkflows/data/t1w-mni_registration_testing_001.json
aslprep/niworkflows/data/t1w-mni_registration_testing_002.json
aslprep/niworkflows/engine/__init__.py
aslprep/niworkflows/engine/workflows.py
aslprep/niworkflows/engine/tests/__init__.py
aslprep/niworkflows/engine/tests/test_workflows.py
aslprep/niworkflows/func/__init__.py
aslprep/niworkflows/func/util.py
aslprep/niworkflows/interfaces/__init__.py
aslprep/niworkflows/interfaces/ants.py
aslprep/niworkflows/interfaces/bids.py
aslprep/niworkflows/interfaces/cifti.py
aslprep/niworkflows/interfaces/confounds.py
aslprep/niworkflows/interfaces/fixes.py
aslprep/niworkflows/interfaces/freesurfer.py
aslprep/niworkflows/interfaces/images.py
aslprep/niworkflows/interfaces/itk.py
aslprep/niworkflows/interfaces/masks.py
aslprep/niworkflows/interfaces/mni.py
aslprep/niworkflows/interfaces/nibabel.py
aslprep/niworkflows/interfaces/nilearn.py
aslprep/niworkflows/interfaces/nitransforms.py
aslprep/niworkflows/interfaces/patches.py
aslprep/niworkflows/interfaces/plotting.py
aslprep/niworkflows/interfaces/registration.py
aslprep/niworkflows/interfaces/report_base.py
aslprep/niworkflows/interfaces/segmentation.py
aslprep/niworkflows/interfaces/space.py
aslprep/niworkflows/interfaces/surf.py
aslprep/niworkflows/interfaces/utility.py
aslprep/niworkflows/interfaces/utils.py
aslprep/niworkflows/interfaces/tests/__init__.py
aslprep/niworkflows/interfaces/tests/test_bids.py
aslprep/niworkflows/interfaces/tests/test_freesurfer.py
aslprep/niworkflows/interfaces/tests/test_images.py
aslprep/niworkflows/interfaces/tests/test_itk.py
aslprep/niworkflows/interfaces/tests/test_nibabel.py
aslprep/niworkflows/interfaces/tests/test_utility.py
aslprep/niworkflows/reports/__init__.py
aslprep/niworkflows/reports/core.py
aslprep/niworkflows/reports/report.tpl
aslprep/niworkflows/reports/tests/__init__.py
aslprep/niworkflows/reports/tests/test_core.py
aslprep/niworkflows/tests/__init__.py
aslprep/niworkflows/tests/conftest.py
aslprep/niworkflows/tests/test_confounds.py
aslprep/niworkflows/tests/test_registration.py
aslprep/niworkflows/tests/test_segmentation.py
aslprep/niworkflows/tests/test_utils.py
aslprep/niworkflows/tests/test_viz.py
aslprep/niworkflows/utils/__init__.py
aslprep/niworkflows/utils/bids.py
aslprep/niworkflows/utils/connections.py
aslprep/niworkflows/utils/images.py
aslprep/niworkflows/utils/misc.py
aslprep/niworkflows/utils/spaces.py
aslprep/niworkflows/utils/tests/__init__.py
aslprep/niworkflows/utils/tests/test_images.py
aslprep/niworkflows/utils/tests/test_misc.py
aslprep/niworkflows/utils/tests/test_spaces.py
aslprep/niworkflows/utils/tests/test_utils.py
aslprep/niworkflows/viz/__init__.py
aslprep/niworkflows/viz/notebook.py
aslprep/niworkflows/viz/plots.py
aslprep/niworkflows/viz/utils.py
aslprep/pybids/__init__.py
aslprep/pybids/_version.py
aslprep/pybids/config.py
aslprep/pybids/due.py
aslprep/pybids/utils.py
aslprep/pybids/analysis/__init__.py
aslprep/pybids/analysis/analysis.py
aslprep/pybids/analysis/auto_model.py
aslprep/pybids/analysis/hrf.py
aslprep/pybids/analysis/tests/__init__.py
aslprep/pybids/analysis/tests/test_analysis.py
aslprep/pybids/analysis/tests/test_automodel.py
aslprep/pybids/analysis/tests/test_transformations.py
aslprep/pybids/analysis/transformations/__init__.py
aslprep/pybids/analysis/transformations/base.py
aslprep/pybids/analysis/transformations/compute.py
aslprep/pybids/analysis/transformations/munge.py
aslprep/pybids/external/__init__.py
aslprep/pybids/external/inflect.py
aslprep/pybids/layout/__init__.py
aslprep/pybids/layout/index.py
aslprep/pybids/layout/layout.py
aslprep/pybids/layout/models.py
aslprep/pybids/layout/writing.py
aslprep/pybids/layout/config/bids.json
aslprep/pybids/layout/config/derivatives.json
aslprep/pybids/layout/tests/__init__.py
aslprep/pybids/layout/tests/conftest.py
aslprep/pybids/layout/tests/test_layout.py
aslprep/pybids/layout/tests/test_models.py
aslprep/pybids/layout/tests/test_path_building.py
aslprep/pybids/layout/tests/test_rootpath.py
aslprep/pybids/layout/tests/test_validation.py
aslprep/pybids/layout/tests/test_writing.py
aslprep/pybids/layout/tests/data/sample_validation_config.json
aslprep/pybids/reports/__init__.py
aslprep/pybids/reports/parsing.py
aslprep/pybids/reports/report.py
aslprep/pybids/reports/utils.py
aslprep/pybids/reports/config/converters.json
aslprep/pybids/reports/tests/__init__.py
aslprep/pybids/reports/tests/test_parsing.py
aslprep/pybids/reports/tests/test_report.py
aslprep/pybids/tests/__init__.py
aslprep/pybids/tests/test_config.py
aslprep/pybids/tests/utils.py
aslprep/pybids/variables/__init__.py
aslprep/pybids/variables/entities.py
aslprep/pybids/variables/io.py
aslprep/pybids/variables/kollekshuns.py
aslprep/pybids/variables/variables.py
aslprep/pybids/variables/tests/__init__.py
aslprep/pybids/variables/tests/test_collections.py
aslprep/pybids/variables/tests/test_entities.py
aslprep/pybids/variables/tests/test_io.py
aslprep/pybids/variables/tests/test_variables.py
aslprep/smriprep/__about__.py
aslprep/smriprep/__init__.py
aslprep/smriprep/__main__.py
aslprep/smriprep/_version.py
aslprep/smriprep/conf/__init__.py
aslprep/smriprep/data/boilerplate.bib
aslprep/smriprep/data/io_spec.json
aslprep/smriprep/data/itkIdentityTransform.txt
aslprep/smriprep/interfaces/__init__.py
aslprep/smriprep/interfaces/freesurfer.py
aslprep/smriprep/interfaces/reports.py
aslprep/smriprep/interfaces/templateflow.py
aslprep/smriprep/utils/__init__.py
aslprep/smriprep/utils/bids.py
aslprep/smriprep/utils/misc.py
aslprep/smriprep/workflows/__init__.py
aslprep/smriprep/workflows/anatomical.py
aslprep/smriprep/workflows/base.py
aslprep/smriprep/workflows/norm.py
aslprep/smriprep/workflows/outputs.py
aslprep/smriprep/workflows/surfaces.py
aslprep/tests/__init__.py
aslprep/tests/test_config.py
aslprep/utils/__init__.py
aslprep/utils/bids.py
aslprep/utils/meepi.py
aslprep/utils/misc.py
aslprep/utils/sentry.py
aslprep/utils/testing.py
aslprep/workflows/__init__.py
aslprep/workflows/base.py
aslprep/workflows/tests.py
aslprep/workflows/asl/__init__.py
aslprep/workflows/asl/base.py
aslprep/workflows/asl/cbf.py
aslprep/workflows/asl/confounds.py
aslprep/workflows/asl/ge_utils.py
aslprep/workflows/asl/gecbf.py
aslprep/workflows/asl/hmc.py
aslprep/workflows/asl/outputs.py
aslprep/workflows/asl/registration.py
aslprep/workflows/asl/resampling.py
aslprep/workflows/asl/stc.py
aslprep/workflows/asl/t2s.py
aslprep/workflows/asl/tests/__init__.py
aslprep/workflows/asl/tests/test_confounds.py