LICENSE
README.md
pyproject.toml
artic_raccoon.egg-info/PKG-INFO
artic_raccoon.egg-info/SOURCES.txt
artic_raccoon.egg-info/dependency_links.txt
artic_raccoon.egg-info/entry_points.txt
artic_raccoon.egg-info/requires.txt
artic_raccoon.egg-info/top_level.txt
raccoon/__init__.py
raccoon/command.py
raccoon/assets/artic-logo-small.svg
raccoon/assets/raccoon_logo.svg
raccoon/commands/__init__.py
raccoon/commands/alignment.py
raccoon/commands/combine.py
raccoon/commands/mask.py
raccoon/commands/phylo.py
raccoon/templates/aln_qc.html
raccoon/templates/base.html
raccoon/templates/mask.html
raccoon/templates/seq_qc.html
raccoon/templates/tree_qc.html
raccoon/utils/__init__.py
raccoon/utils/alignment_functions.py
raccoon/utils/constants.py
raccoon/utils/io.py
raccoon/utils/misc.py
raccoon/utils/phylo_functions.py
raccoon/utils/plotly_baltic.py
raccoon/utils/plotting.py
raccoon/utils/reconstruction_functions.py
raccoon/utils/reporting.py
tests/test_alignment_command.py
tests/test_alignment_qc.py
tests/test_bot_baltic.py
tests/test_cli.py
tests/test_combine_command.py
tests/test_end_to_end_alignment_qc.py
tests/test_io.py
tests/test_mask_command.py
tests/test_plotting.py
tests/test_reporting_templates.py