from apb.application.tmalign.align import (
    TMAlignOutput,
    align_many_to_many,
    align_to_reference,
    load_alignments_json,
    save_alignments_json,
)
from apb.application.tmalign.core import run_tmalign

__all__ = [
    "run_tmalign",
    "align_many_to_many",
    "align_to_reference",
    "load_alignments_json",
    "save_alignments_json",
    "TMAlignOutput",
]
