README.md
setup.py
aqtest1/Aquila_Contigs_WGS.py
aqtest1/Aquila_assembly_based_variants_call.py
aqtest1/Aquila_clean.py
aqtest1/Aquila_phasing_all_variants.py
aqtest1/Aquila_step0_sortbam.py
aqtest1/Aquila_step0_sortbam_hybrid.py
aqtest1/Aquila_step1.py
aqtest1/Aquila_step1_multilibs.py
aqtest1/Aquila_step2.py
aqtest1/Assign_phase_block_v3.py
aqtest1/Assign_phase_block_v4.py
aqtest1/Concatenate_contigs_all_v4_extend_for_HCbk.py
aqtest1/Concatenate_contigs_from_microcontigs.py
aqtest1/Cut_phaseblock_for_phased_h5_v4.0_highconf_v2.py
aqtest1/Extract_SNV_info_from_contigs_forcontiginfo_forall.py
aqtest1/Extract_SV_info_from_contigs_use_overlap_for_del_forcontiginfo.py
aqtest1/Extract_SV_info_from_contigs_use_shift_for_ins2_forcontiginfo.py
aqtest1/Extract_qname_from_phased_molecule_cut_phase_blocks_v3.py
aqtest1/Extract_qname_from_phased_molecule_cut_phase_blocks_v3_hybrid.py
aqtest1/Generate_highconf_cut_profile_v2.py
aqtest1/Get_uniqnessmap_for_Aquila.py
aqtest1/Make_supercontig_based_on_HCbk_from_sam_v5.py
aqtest1/Merge_reads_for_PB_of_merged_libs_v2.py
aqtest1/Molecule_phase_alg2_withProbModel_v3_MT2.py
aqtest1/Molecule_phase_alg2_withProbModel_v3_MT2_hybrid.py
aqtest1/Read_fastqs_from_sortedbam_v2.py
aqtest1/Run_extract_reads_for_smallchunks_all_lessmem.py
aqtest1/Run_extract_reads_for_smallchunks_all_lessmem_hybrid.py
aqtest1/Run_h5_all_multithreads.py
aqtest1/Run_microcontigs_all.py
aqtest1/Run_phase_alg_multithreads2.py
aqtest1/Run_phase_alg_multithreads2_hybrid.py
aqtest1/Run_spades_final_MT_2_all_noec_deltemp.py
aqtest1/__init__.py
aqtest1.egg-info/PKG-INFO
aqtest1.egg-info/SOURCES.txt
aqtest1.egg-info/dependency_links.txt
aqtest1.egg-info/entry_points.txt
aqtest1.egg-info/not-zip-safe
aqtest1.egg-info/requires.txt
aqtest1.egg-info/top_level.txt