MANIFEST.in
run_apples.py
setup.py
apples/Algorithm.py
apples/Core.py
apples/__init__.py
apples/criteria.py
apples/distance.py
apples/jutil.py
apples/readfq.py
apples/util.py
apples.egg-info/PKG-INFO
apples.egg-info/SOURCES.txt
apples.egg-info/dependency_links.txt
apples.egg-info/not-zip-safe
apples.egg-info/requires.txt
apples.egg-info/top_level.txt
data/backbone.nwk
data/dist.mat
data/extended_ref.fa
data/out.jplace
data/query.fa
data/ref.fa
data/small_backbone.nwk
data/small_dist.mat