CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
code_of_conduct.md
requirements.txt
rtd_requirements.txt
setup.cfg
setup.py
ants/__init__.py
ants/contrib/__init__.py
ants/contrib/bids/__init__.py
ants/contrib/bids/cohort.py
ants/contrib/sampling/__init__.py
ants/contrib/sampling/affine2d.py
ants/contrib/sampling/affine3d.py
ants/contrib/sampling/transforms.py
ants/contrib/sklearn_interface/__init__.py
ants/contrib/sklearn_interface/sklearn_registration.py
ants/core/__init__.py
ants/core/ants_image.py
ants/core/ants_image_io.py
ants/core/ants_metric.py
ants/core/ants_metric_io.py
ants/core/ants_transform.py
ants/core/ants_transform_io.py
ants/learn/__init__.py
ants/learn/decomposition.py
ants/lib/ANTsVersionConfig.h
ants/lib/CMakeLists.txt
ants/lib/CONTRIB_antsImageAugment.cxx
ants/lib/LOCAL_SmoothImage.cxx
ants/lib/LOCAL_addNoiseToImage.cxx
ants/lib/LOCAL_antiAlias.cxx
ants/lib/LOCAL_antsImage.cxx
ants/lib/LOCAL_antsImage.h
ants/lib/LOCAL_antsImageClone.cxx
ants/lib/LOCAL_antsImageHeaderInfo.cxx
ants/lib/LOCAL_antsImageMutualInformation.cxx
ants/lib/LOCAL_antsImageToImageMetric.cxx
ants/lib/LOCAL_antsImageToImageMetric.h
ants/lib/LOCAL_antsImageUtils.cxx
ants/lib/LOCAL_antsImageWin.cxx
ants/lib/LOCAL_antsTransform.cxx
ants/lib/LOCAL_antsTransform.h
ants/lib/LOCAL_composeDisplacementFields.cxx
ants/lib/LOCAL_cropImage.cxx
ants/lib/LOCAL_fitBsplineDisplacementField.cxx
ants/lib/LOCAL_fitBsplineDisplacementFieldToScatteredData.cxx
ants/lib/LOCAL_fitBsplineObjectToScatteredData.cxx
ants/lib/LOCAL_fitThinPlateSplineDisplacementFieldToScatteredData.cxx
ants/lib/LOCAL_fsl2antstransform.cxx
ants/lib/LOCAL_getNeighborhoodMatrix.cxx
ants/lib/LOCAL_hausdorffDistance.cxx
ants/lib/LOCAL_histogramMatchImages.cxx
ants/lib/LOCAL_integrateVelocityField.cxx
ants/lib/LOCAL_invertDisplacementField.cxx
ants/lib/LOCAL_labelOverlapMeasures.cxx
ants/lib/LOCAL_labelStats.cxx
ants/lib/LOCAL_mergeChannels.cxx
ants/lib/LOCAL_mergeChannels.h
ants/lib/LOCAL_padImage.cxx
ants/lib/LOCAL_readImage.cxx
ants/lib/LOCAL_readImage.h
ants/lib/LOCAL_readTransform.cxx
ants/lib/LOCAL_readTransform.h
ants/lib/LOCAL_reflectionMatrix.cxx
ants/lib/LOCAL_reorientImage.cxx
ants/lib/LOCAL_reorientImage2.cxx
ants/lib/LOCAL_rgbToVector.cxx
ants/lib/LOCAL_sccaner.cxx
ants/lib/LOCAL_simulateDisplacementField.cxx
ants/lib/LOCAL_sliceImage.cxx
ants/lib/LOCAL_weingartenImageCurvature.cxx
ants/lib/ReadWriteData.h
ants/lib/WRAP_Atropos.cxx
ants/lib/WRAP_AverageAffineTransform.cxx
ants/lib/WRAP_AverageAffineTransformNoRigid.cxx
ants/lib/WRAP_ConvertScalarImageToRGB.cxx
ants/lib/WRAP_CreateJacobianDeterminantImage.cxx
ants/lib/WRAP_CreateTiledMosaic.cxx
ants/lib/WRAP_DenoiseImage.cxx
ants/lib/WRAP_KellyKapowski.cxx
ants/lib/WRAP_LabelClustersUniquely.cxx
ants/lib/WRAP_LabelGeometryMeasures.cxx
ants/lib/WRAP_LesionFilling.cxx
ants/lib/WRAP_N3BiasFieldCorrection.cxx
ants/lib/WRAP_N4BiasFieldCorrection.cxx
ants/lib/WRAP_NonLocalSuperResolution.cxx
ants/lib/WRAP_ResampleImage.cxx
ants/lib/WRAP_SuperResolution.cxx
ants/lib/WRAP_ThresholdImage.cxx
ants/lib/WRAP_TileImages.cxx
ants/lib/WRAP_TimeSCCAN.cxx
ants/lib/WRAP_antsAffineInitializer.cxx
ants/lib/WRAP_antsApplyTransforms.cxx
ants/lib/WRAP_antsApplyTransformsToPoints.cxx
ants/lib/WRAP_antsJointFusion.cxx
ants/lib/WRAP_antsLandmarkBasedTransformInitializer.cxx
ants/lib/WRAP_antsMotionCorr.cxx
ants/lib/WRAP_antsMotionCorrStats.cxx
ants/lib/WRAP_antsRegistration.cxx
ants/lib/WRAP_antsSliceRegularizedRegistration.cxx
ants/lib/WRAP_antsSurf.cxx
ants/lib/WRAP_antsVol.cxx
ants/lib/WRAP_iMath.cxx
ants/lib/__init__.py
ants/lib/itkPyBuffer.h
ants/lib/itkPyBuffer.hxx
ants/lib/itkPyVnl.h
ants/lib/itkPyVnl.hxx
ants/lib/register_transforms.h
ants/registration/__init__.py
ants/registration/affine_initializer.py
ants/registration/apply_transforms.py
ants/registration/build_template.py
ants/registration/create_jacobian_determinant_image.py
ants/registration/create_warped_grid.py
ants/registration/fsl2antstransform.py
ants/registration/interface.py
ants/registration/landmark_transforms.py
ants/registration/make_points_image.py
ants/registration/metrics.py
ants/registration/reflect_image.py
ants/registration/reorient_image.py
ants/registration/resample_image.py
ants/registration/symmetrize_image.py
ants/segmentation/__init__.py
ants/segmentation/anti_alias.py
ants/segmentation/atropos.py
ants/segmentation/functional_lung_segmentation.py
ants/segmentation/fuzzy_spatial_cmeans_segmentation.py
ants/segmentation/joint_label_fusion.py
ants/segmentation/kelly_kapowski.py
ants/segmentation/kmeans.py
ants/segmentation/label_geometry_measures.py
ants/segmentation/otsu.py
ants/segmentation/prior_based_segmentation.py
ants/utils/__init__.py
ants/utils/add_noise_to_image.py
ants/utils/average_transform.py
ants/utils/averaging.py
ants/utils/bias_correction.py
ants/utils/channels.py
ants/utils/compose_displacement_fields.py
ants/utils/convert_nibabel.py
ants/utils/crop_image.py
ants/utils/denoise_image.py
ants/utils/fit_bspline_displacement_field.py
ants/utils/fit_bspline_object_to_scattered_data.py
ants/utils/fit_thin_plate_spline_displacement_field.py
ants/utils/get_ants_data.py
ants/utils/get_centroids.py
ants/utils/get_mask.py
ants/utils/get_neighborhood.py
ants/utils/hausdorff_distance.py
ants/utils/histogram_match_image.py
ants/utils/iMath.py
ants/utils/image_similarity.py
ants/utils/image_to_cluster_images.py
ants/utils/impute.py
ants/utils/integrate_velocity_field.py
ants/utils/invariant_image_similarity.py
ants/utils/invert_displacement_field.py
ants/utils/label_clusters.py
ants/utils/label_image_centroids.py
ants/utils/label_overlap_measures.py
ants/utils/label_stats.py
ants/utils/labels_to_matrix.py
ants/utils/mask_image.py
ants/utils/mni2tal.py
ants/utils/morphology.py
ants/utils/multi_label_morphology.py
ants/utils/ndimage_to_list.py
ants/utils/pad_image.py
ants/utils/process_args.py
ants/utils/quantile.py
ants/utils/scalar_rgb_vector.py
ants/utils/simulate_displacement_field.py
ants/utils/slice_image.py
ants/utils/smooth_image.py
ants/utils/threshold_image.py
ants/utils/weingarten_image_curvature.py
ants/viz/__init__.py
ants/viz/create_tiled_mosaic.py
ants/viz/plot.py
ants/viz/render_surface_function.py
ants/viz/surface.py
ants/viz/volume.py
antspyx.egg-info/PKG-INFO
antspyx.egg-info/SOURCES.txt
antspyx.egg-info/dependency_links.txt
antspyx.egg-info/not-zip-safe
antspyx.egg-info/requires.txt
antspyx.egg-info/top_level.txt
data/ch2.nii.gz
data/function.nii.gz
data/mni.nii.gz
data/mnia.nii.gz
data/oasis_mni.nii.gz
data/powers_mni_itk.csv
data/r16slice.jpg
data/r27slice.jpg
data/r30slice.jpg
data/r62slice.jpg
data/r64slice.jpg
data/r85slice.jpg
data/simple.jpg
data/surf.nii.gz
data/surface.nii.gz
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/other/ANTsPy Tutorial.ipynb
docs/other/ANTsR_Comparison.md
docs/other/All_Functions.md
docs/other/_config.yml
docs/source/ants.contrib.bids.rst
docs/source/ants.contrib.rst
docs/source/ants.contrib.sampling.rst
docs/source/ants.contrib.sklearn_interface.rst
docs/source/ants.core.rst
docs/source/ants.learn.rst
docs/source/ants.lib.rst
docs/source/ants.registration.rst
docs/source/ants.rst
docs/source/ants.segmentation.rst
docs/source/ants.utils.rst
docs/source/ants.viz.rst
docs/source/conf.py
docs/source/core.rst
docs/source/emptyinit.py
docs/source/index.rst
docs/source/learn.rst
docs/source/modules.rst
docs/source/registration.rst
docs/source/segmentation.rst
docs/source/setup.rst
docs/source/utils.rst
docs/source/vis.rst
docs/source/_static/css/ants_theme.css
docs/source/_static/img/antspy-logo-icon.png
docs/source/_static/img/antspy-logo.png
scripts/build_itk.sh
scripts/clone_itk.sh
scripts/configure_ANTsPy.bat
scripts/configure_ANTsPy.sh
scripts/configure_ANTsPy_windows.sh
scripts/configure_ITK.bat
scripts/configure_ITK.sh
scripts/configure_ITK_External_linux.sh
scripts/configure_ITK_External_mac.sh
scripts/configure_VTK.sh
scripts/configure_VTK_External_linux.sh
scripts/configure_VTK_External_mac.sh
tests/test_bugs.py
tests/test_contrib.py
tests/test_core_ants_image.py
tests/test_core_ants_image_io.py
tests/test_core_ants_metric.py
tests/test_core_ants_transform.py
tests/test_core_ants_transform_io.py
tests/test_core_label_image.py
tests/test_learn.py
tests/test_registation.py
tests/test_segmentation.py
tests/test_utils.py
tests/test_viz.py