from .get_pretrained_network import get_pretrained_network
from .get_antsxnet_data import get_antsxnet_data, get_antsxnet_cache_directory, set_antsxnet_cache_directory

from .denseunet_utilities import Scale

from .spatial_transformer_network_utilities import SpatialTransformer2D, SpatialTransformer3D

from .transformer_utilities import ExtractPatches2D, ExtractPatches3D, EncodePatches, StochasticDepth, ExtractConvolutionalPatches2D, ExtractConvolutionalPatches3D

from .super_resolution_utilities import mse, mae, psnr, ssim, gmsd
from .super_resolution_utilities import apply_super_resolution_model_to_image

from .deep_embedded_clustering_utilities import DeepEmbeddedClustering
from .deep_embedded_clustering_utilities import DeepEmbeddedClusteringModel

# from .mixture_density_utilities import MixtureDensityLayer
# from .mixture_density_utilities import get_mixture_density_loss_function
# from .mixture_density_utilities import get_mixture_density_sampling_function
# from .mixture_density_utilities import get_mixture_density_mse_function
# from .mixture_density_utilities import split_mixture_parameters
# from .mixture_density_utilities import mixture_density_software_max
# from .mixture_density_utilities import sample_from_output

from .resample_tensor_utilities import ResampleTensorLayer2D, ResampleTensorLayer3D
from .resample_tensor_utilities import ResampleTensorToTargetTensorLayer2D, ResampleTensorToTargetTensorLayer3D

from .attention_utilities import AttentionLayer2D, AttentionLayer3D

from .custom_metrics import binary_dice_coefficient
from .custom_metrics import multilabel_dice_coefficient
from .custom_metrics import peak_signal_to_noise_ratio
from .custom_metrics import pearson_correlation_coefficient
from .custom_metrics import categorical_focal_loss
from .custom_metrics import weighted_categorical_crossentropy
from .custom_metrics import binary_surface_loss
from .custom_metrics import multilabel_surface_loss
from .custom_metrics import maximum_mean_discrepancy

from .custom_normalization_layers import InstanceNormalization

from .custom_activation_layers import LogSoftmax

from .custom_convolution_layers import PartialConv2D, PartialConv3D

from .gaussian_diffusion_utilities import GaussianDiffusion

from .preprocess_image import preprocess_brain_image
from .brain_extraction import brain_extraction
from .brain_tumor_segmentation import brain_tumor_segmentation
from .brain_mra_vessel_segmentation import brain_mra_vessel_segmentation
from .lesion_segmentation import lesion_segmentation
from .lesion_segmentation import lesion_segmentation_experimental
from .inpainting import whole_head_inpainting
from .cortical_thickness import cortical_thickness
from .cortical_thickness import longitudinal_cortical_thickness

from .histology import arterial_lesion_segmentation

# from .histology import allen_ex5_brain_extraction
# from .histology import allen_histology_brain_mask
# from .histology import allen_histology_cerebellum_mask
# from .histology import allen_histology_hemispherical_coronal_mask
# from .histology import allen_histology_super_resolution
# from .histology import mouse_mri_brain_extraction

from .mouse import mouse_brain_extraction
from .mouse import mouse_brain_parcellation
from .mouse import mouse_histology_brain_mask
from .mouse import mouse_histology_cerebellum_mask
from .mouse import mouse_histology_hemispherical_coronal_mask
from .mouse import mouse_histology_super_resolution
from .mouse import mouse_cortical_thickness

from .lung_extraction import lung_extraction
from .lung_segmentation import lung_pulmonary_artery_segmentation
from .lung_segmentation import lung_airway_segmentation

from .white_matter_hyperintensity_segmentation import sysu_media_wmh_segmentation
from .white_matter_hyperintensity_segmentation import hypermapp3r_segmentation
from .white_matter_hyperintensity_segmentation import wmh_segmentation
from .white_matter_hyperintensity_segmentation import shiva_pvs_segmentation
from .white_matter_hyperintensity_segmentation import shiva_wmh_segmentation

from .claustrum_segmentation import claustrum_segmentation
from .hypothalamus_segmentation import hypothalamus_segmentation
from .hippmapp3r_segmentation import hippmapp3r_segmentation
from .deep_flash import deep_flash
from .deep_atropos import deep_atropos
from .desikan_killiany_tourville_labeling import desikan_killiany_tourville_labeling
from .harvard_oxford_atlas_labeling import harvard_oxford_atlas_labeling
from .cerebellum_morphology import cerebellum_morphology
from .brain_age import brain_age
from .mri_super_resolution import mri_super_resolution
from .quality_assessment import tid_neural_image_assessment
from .quality_assessment import random_mask
from .lung_segmentation import el_bicho

from .mri_modality_classification import mri_modality_classification
from .chexnet import chexnet
from .chexnet import check_xray_lung_orientation
from .neural_style_transfer import neural_style_transfer
