MANIFEST.in
README.md
pyproject.toml
antspymm/__init__.py
antspymm/mm.py
antspymm.egg-info/PKG-INFO
antspymm.egg-info/SOURCES.txt
antspymm.egg-info/dependency_links.txt
antspymm.egg-info/requires.txt
antspymm.egg-info/top_level.txt
docs/adni_rsfmri_2_nrg_conversion.py
docs/antspymm.html
docs/antspymm_annotated_output_tree.pages
docs/antspymm_annotated_output_tree.txt
docs/antspymm_computational_reproducibility.Rmd
docs/antspymm_computational_reproducibility.html
docs/antspymm_data_dictionary.csv
docs/antspyt1w.html
docs/aslprep_perfusion_run_localint.py
docs/bids_2_nrg.py
docs/bids_cohort_example.py
docs/bind_mm_wide.R
docs/blind_qc.Rmd
docs/blind_qc.html
docs/blind_qc.py
docs/convert_adni_dti_to_nrg.R
docs/deepnbm.jpg
docs/deformation_gradient_reo.py
docs/describe_mm_data.R
docs/dipy_dti_recon.py
docs/dti_distortion_correction_voxelwise_varying_bvectors_example.py
docs/dti_recon.py
docs/dti_reconstruction_voxelwise_varying_bvectors_localint.py
docs/dti_reg.py
docs/dwi_rebasing.py
docs/dwi_run.py
docs/dwi_run_ptbp_scrub.py
docs/efficient_dwi_fit_mt_localint.py
docs/ex_rsfmri_run_minimal_ptbp.py
docs/ex_sr.py
docs/example_antspymm_output.csv
docs/example_run_from_directory.py
docs/flair_run_localint.py
docs/index.html
docs/joint_dti_recon_localint.py
docs/make_dict_table.Rmd
docs/make_dict_table.html
docs/mm.py
docs/mm_csv_ex_2.py
docs/mm_csv_localint.py
docs/mm_csv_localint_sr.py
docs/mm_nrg.py
docs/nihms-1510954-f0146.jpg
docs/nrg_cohort_example.py
docs/parallel_study_aggregation_example.py
docs/perfusion_ptbp.py
docs/perfusion_run_nnl.py
docs/ppmi_step1_blind_qc.py
docs/ppmi_step2_outlierness.py
docs/ppmi_step3_mm_nrg_csv.py
docs/ppmi_step4_aggregate.py
docs/ptbp_nrg.py
docs/roi_visualization.py
docs/roi_visualization_ppmi.py
docs/rsfmri_run_minimal_localint.py
docs/run_local_integration_scripts.py
docs/run_mm_example.sh
docs/search.js
docs/t1w_sr.py
docs/template_overlays.py
docs/ukbb_rsfmri.py
docs/ukbb_to_nrg_processing.py
docs/ukbb_to_nrg_processing2.py
docs/visualize_tractogram.py
tests/test_loop.py
tests/test_nrg_validation.py
tests/test_reference_run.py
tests/voxelwise_bvec_dti_recon_test.py